Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV FBXO2 26232 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 11709267 11709267 + Missense_Mutation SNP G G C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_012168 exon5 c.C633G p.S211R AGCGTCGCTGCGG 72 14 0.19 84 0 0 21 8 0.38 AKIRIN1 79647 mdanderson.org 37 1 39469060 39469060 + Missense_Mutation SNP A A G novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_024595 exon4 c.A538G p.M180V CAGATTATGCGAC 48 3 0.06 57 0 0 232 0 0.00 PABPC4 8761 mdanderson.org 37 1 40030789 40030789 + Missense_Mutation SNP C C A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_003819 exon8 c.G1234T p.A412S GGACTGCTGGCAC 40 3 0.08 62 0 0 360 0 0.00 DPH2 1802 mdanderson.org 37 1 44438207 44438207 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001384 exon6 c.G1466T p.G489V GAAGCGGCTGATA 49 3 0.06 83 0 0 115 0 0.00 PLK3 1263 mdanderson.org 37 1 45266604 45266604 + Silent SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_004073 exon2 c.G303A p.P101P CAAGCCGCATCAG 67 4 0.06 94 0 0 7 0 0.00 FGGY 55277 broad.mit.edu 37 1 59811958 59811958 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 FGGY_ENST00000303721,colon,carcinoma,+1,2 FGGY NM_001113411 exon4 c.G353T p.R118L ACCATCGAGCAGT 100 3 0.03 154 0 0 99 2 16 0 0.00 LMO4 8543 broad.mit.edu;mdanderson.org 37 1 87797776 87797776 + Silent SNP C C T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . LMO4 NM_006769 exon2 c.C78T p.C26C AGGCTGCGGGGGC 74 4 0.05 109 0 0 21 172 0 0.00 CD46 4179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207941164 207941164 + Silent SNP C C T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_172359 exon8 c.C942T p.A314A CAGTGCCTCAGGT 109 31 0.28 110 0 0 74 19 0.26 NCOA4 8031 mdanderson.org 37 10 51585077 51585077 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001145260 exon9 c.G1224T p.Q408H TGTCCAGAACCAT 33 3 0.09 50 0 0 151 1 0.01 ALDH18A1 5832 mdanderson.org 37 10 97397134 97397134 + Silent SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001017423 exon4 c.C363A p.A121A GCCAAAGGCTACG 44 3 0.07 61 0 0 34 0 0.00 PI4K2A 55361 mdanderson.org 37 10 99400600 99400600 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_018425 exon1 c.G101T p.G34V CCGGGGGCGCGGT 34 3 0.09 46 0 0 12 0 0.00 MUC2 4583 mdanderson.org 37 11 1093295 1093295 + Missense_Mutation SNP C C T rs200145328 alternate_allele TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 MUC2_ENST00000441003,rectum,carcinoma,0,2 MUC2_ENST00000441003 NM_002457 exon30 c.C5114T p.T1705I CCACCACTACGGT 18 2 0.11 33 0 0 0 2 0 0 KRTAP5-3 387266 broad.mit.edu 37 11 1629385 1629385 + Silent SNP A A G novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . KRTAP5-3 NM_001012708 exon1 c.T231C p.C77C GGAGCCACAGCCC 102 8 0.08 132 2 0.0151515152 33 0 0 FAM160A2 84067 mdanderson.org 37 11 6239143 6239143 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_032127 exon9 c.C1715A p.A572E CGACGTGCCTCAC 20 2 0.10 24 0 0 21 0 0.00 PIK3C2A 5286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 17121444 17121444 + Missense_Mutation SNP G G C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_002645 exon25 c.C4081G p.Q1361E TAGTTTGGGGTTG 70 21 0.30 104 0 0 40 23 0.58 SIAE 54414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124517336 124517336 + Silent SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_170601 exon7 c.C891T p.I297I GTCTTCGATGAGT 39 17 0.44 64 0 0 38 36 0.95 PRDM10 56980 mdanderson.org 37 11 129772250 129772250 + Silent SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_020228 exon22 c.C3441A p.T1147T CCCGTTGGTGGTG 35 3 0.09 88 0 0 9 0 0.00 MRPS35 0 broad.mit.edu 37 12 27863571 27863572 + RNA INS - - T rs11324548 bycluster;by1000genomes TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . MRPS35 . . . . TTAAGGATTTTTT 6 2 0.33 9 0 0 26 0 0 KCNH3 23416 ucsc.edu 37 12 49937278 49937278 + Missense_Mutation SNP C C A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . KCNH3 NM_012284 exon5 c.C800A p.A267D ACCTGGCCGTGGA 13 4 0.31 14 0 0 88 20 0 0.00 SLC35E3 55508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 69140302 69140302 + Missense_Mutation SNP G G C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_018656 exon1 c.G145C p.V49L ACCCTGGTGCACT 139 37 0.27 120 0 0 31 11 0.35 CAPS2 84698 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 75716837 75716837 + Missense_Mutation SNP C C G novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . CAPS2 NM_032606 exon5 c.G265C p.A89P GGTTTGCTGTACT 421 77 0.18 332 1 0.0030120482 96 0 0 HVCN1 84329 broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 111099034 111099034 + Missense_Mutation SNP C C T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . HVCN1 NM_032369 exon4 c.G241A p.A81T TGGGTGCGGGGCC 215 8 0.04 226 0 0 38 111 0 0.00 IRG1 730249 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 13 77531565 77531565 + Missense_Mutation SNP G G C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001258406 exon4 c.G879C p.E293D AGCAGAGAGAGCC 89 26 0.29 146 0 0 0 0 RBM23 55147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 23374412 23374412 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001077351 exon8 c.C617A p.S206Y CCCTTAGAACGAC 95 17 0.18 109 0 0 132 46 0.35 NRL 4901 mdanderson.org 37 14 24550449 24550449 + Missense_Mutation SNP A A T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_006177 exon3 c.T710A p.L237H GCTCAGAGGAAGA 29 3 0.10 49 0 0 3 0 0.00 CEP170B 283638 mdanderson.org 37 14 105353263 105353263 + Missense_Mutation SNP C C T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001112726 exon12 c.C2687T p.A896V ACCTGGCCGCTAC 17 2 0.12 30 0 0 12 0 0.00 NR2E3 10002 mdanderson.org 37 15 72106456 72106456 + Silent SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 NR2E3_ENST00000398840,NS,carcinoma,+2,3 NR2E3_ENST00000398840 NM_014249 exon8 c.G1098T p.V366V GCCCGTGAGGTGA 27 3 0.11 23 0 0 2 3 0 0 SETD1A 9739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 30974776 30974776 + Silent SNP T T C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_014712 exon5 c.T540C p.Y180Y ATACTATGAACTA 75 15 0.20 103 0 0 67 19 0.28 ELMO3 79767 mdanderson.org 37 16 67235503 67235503 + Silent SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_024712 exon10 c.G1035A p.L345L GGGGCTGCTGGAG 31 3 0.10 55 0 0 5 0 0.00 CNTNAP4 85445 mdanderson.org 37 16 76496003 76496003 + Splice_Site SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_033401 exon9 c.1482+1G>T . TTGGAGGTAAGAA 41 3 0.07 90 0 0 0 0 KRT18P55 0 broad.mit.edu 37 17 26633347 26633348 + RNA INS - - G rs35679432 bycluster TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . . . . . TGTTGTTTTTTTT 8 5 0.63 6 0 0 0 0 LOC284100 0 broad.mit.edu 37 17 36214141 36214141 + RNA DEL A A - novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . LOC284100 . . . . AAAATTAAAAAAA 8 4 0.50 9 0 0 14 0 0 RPL19 6143 hgsc.bcm.edu 37 17 37360424 37360424 + Missense_Mutation SNP C C T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 RPL19,NS,carcinoma,-1,1 RPL19 NM_000981 exon5 c.C451T p.R151C AAGGCCCGCAAGA 27 3 0.11 42 1 0.0238095238 -1 1 6239 7 0.00 SRP68 6730 mdanderson.org 37 17 74037023 74037023 + Silent SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 SRP68,caecum,carcinoma,0,3 SRP68 NM_014230 exon14 c.C1561A p.R521R CTGACCGCACTTG 52 3 0.06 42 0 0 0 3 164 0 0.00 ENDOV 284131 mdanderson.org 37 17 78395647 78395647 + Missense_Mutation SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_173627 exon3 c.G248A p.R83H AGAGCCGCATGGT 14 3 0.21 33 0 0 18 0 0.00 NDUFS7 374291 mdanderson.org 37 19 1393300 1393300 + Missense_Mutation SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_024407 exon7 c.G515A p.R172H GCGACCGCATCGT 45 3 0.07 35 0 0 151 0 0.00 ONECUT3 390874 mdanderson.org 37 19 1754743 1754743 + Missense_Mutation SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001080488 exon1 c.G1082A p.R361H TGCTGCGCAACCC 34 3 0.09 41 0 0 0 0 TJP3 27134 mdanderson.org 37 19 3747807 3747807 + Nonsense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001267561 exon19 c.G2365T p.E789X TCCTTGGAGGACA 13 2 0.15 11 0 0 210 0 0.00 LDLR 3949 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11210902 11210902 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . LDLR NM_001195800 exon2 c.G71T p.G24V CAGTGGGCGACAG 41 5 0.12 52 0 0 72 4 0 0.00 CILP2 148113 mdanderson.org 37 19 19656103 19656103 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_153221 exon8 c.G2749T p.G917C CGAGAGGGCACAC 45 3 0.07 86 0 0 8 0 0.00 FAM187B 148109 bcgsc.ca 37 19 35715837 35715837 + Missense_Mutation SNP A A G novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . FAM187B NM_152481 exon2 c.T1001C p.L334P AGCTTCAGCCCCT 45 4 0.09 57 1 0.0175438596 28 0 0 GAPDHS 26330 broad.mit.edu 37 19 36033899 36033899 + Nonsense_Mutation SNP G G T rs150710154 bycluster;alternate_allele TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . GAPDHS NM_014364 exon7 c.G712T p.E238X ATCCACGAGCGAT 94 3 0.03 129 0 0 34 6 0 0.00 ZNF234 10780 broad.mit.edu 37 19 44661286 44661286 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . ZNF234 NM_006630 exon6 c.G1117T p.V373L CCATACGTATGTA 78 3 0.04 103 0 0 132 6 0 0.00 GYS1 2997 mdanderson.org 37 19 49473877 49473877 + Silent SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_002103 exon14 c.C1735A p.R579R GCCGCCGGCTCTG 55 3 0.05 54 0 0 36 0 0.00 CACNG8 59283 mdanderson.org 37 19 54466566 54466566 + Missense_Mutation SNP T T C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_031895 exon1 c.T170C p.L57P CCAACCTCACGGC 20 2 0.10 42 0 0 0 0 ZNF8 7554 broad.mit.edu 37 19 58805784 58805784 + Missense_Mutation SNP G G T rs147895869 bycluster;alternate_allele TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . ZNF8 NM_021089 exon4 c.G610T p.D204Y ACTTACGACTCAC 148 4 0.03 180 0 0 60 14 0 0.00 EPT1 85465 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 26596369 26596369 + Missense_Mutation SNP A A G novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . . . . . GGATCAACTGGTG 167 39 0.23 162 1 0.0061728395 23 10 0.43 TLX2 3196 mdanderson.org 37 2 74743244 74743244 + Silent SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_016170 exon3 c.G783T p.A261A CTTCGCGCTGCAG 50 3 0.06 66 0 0 4 0 0.00 . 0 broad.mit.edu 37 2 91887904 91887905 + RNA INS - - T rs369805878 alternate_allele TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . . . . . ATTTTCCATTTTT 164 23 0.14 160 3 0.01875 0 0 GLS 2744 mdanderson.org 37 2 191746158 191746158 + Silent SNP C C T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_014905 exon1 c.C348T p.G116G GTTTGGCAACAGC 55 4 0.07 61 0 0 8 0 0.00 ATRN 8455 mdanderson.org 37 20 3557613 3557613 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_139322 exon14 c.G2322T p.E774D GTGGGAGCCCCGG 37 3 0.08 61 0 0 112 0 0.00 CNBD2 140894 mdanderson.org 37 20 34572642 34572642 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001207076 exon6 c.G658T p.A220S TTCTTTGCTAATA 110 5 0.05 130 1 0.0076923077 0 0 XBP1 7494 mdanderson.org 37 22 29192120 29192120 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_005080 exon4 c.C514A p.P172T GCAGAGGTGCACG 28 3 0.11 48 0 0 326 0 0.00 COLQ 8292 mdanderson.org 37 3 15516961 15516961 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_005677 exon7 c.C499A p.P167T ACCCTGGCAAGCC 48 3 0.06 103 0 0 0 0 DYNC1LI1 51143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 32578558 32578558 + Nonsense_Mutation SNP G G C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_016141 exon6 c.C777G p.Y259X ATCTCTGTAGTCA 249 54 0.22 300 0 0 103 3 0.03 DLEC1 9940 mdanderson.org 37 3 38103775 38103775 + Missense_Mutation SNP C C A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 DLEC1_ENST00000346219,NS,carcinoma,0,6 DLEC1_ENST00000346219 NM_007335 exon4 c.C789A p.F263L TGAGTTCGAAGAT 29 3 0.10 65 0 0 0 6 0 0 MUC13 56667 mdanderson.org 37 3 124646755 124646755 + Silent SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_033049 exon2 c.C135A p.T45T TTCAGTGGTATCA 24 2 0.08 37 0 0 0 0 MUC4 4585 hgsc.bcm.edu 37 3 195505828 195505828 + Missense_Mutation SNP G G C novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 MUC4_ENST00000463781,NS,carcinoma,-1,3 MUC4_ENST00000463781 NM_018406 exon2 c.C12623G p.P4208R GGAAGAGGGGTGG 101 5 0.05 103 0 0 -1 3 1 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599320 55599320 + Missense_Mutation SNP G G C rs121913506 bycluster TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 KIT,colon,carcinoma,0,932 KIT NM_000222 exon17 c.G2446C p.D816H GCCAGAGACATCA 55 39 0.71 74 0 0 0 932 242 241 1.00 . 0 broad.mit.edu 37 4 112747976 112747976 + RNA DEL T T - novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . . . . . CGACGATTTTTTT 6 2 0.33 5 0 0 0 0 NPY1R 4886 mdanderson.org 37 4 164247178 164247178 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 NPY1R,colon,carcinoma,+2,2 NPY1R NM_000909 exon2 c.C529A p.Q177K TTACTTGGTAGAT 92 5 0.05 148 0 0 2 2 3 0 0.00 PCDHGB2 56103 mdanderson.org 37 5 140740430 140740430 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_032096 exon1 c.G728T p.S243I TGTTCAGCCAGGA 49 3 0.06 99 0 0 3 0 0.00 GLRA1 2741 mdanderson.org 37 5 151239421 151239421 + Missense_Mutation SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_000171 exon4 c.C401T p.A134V AAGTGGGCCCCCT 75 4 0.05 122 0 0 0 0 ADAMTS2 9509 mdanderson.org 37 5 178581103 178581103 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_014244 exon8 c.C1329A p.F443L GCGGTGGAAGGCG 23 3 0.13 29 0 0 5 0 0.00 LRRC61 65999 mdanderson.org 37 7 150034292 150034292 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_023942 exon2 c.G342T p.Q114H GGGCCAGCTGCAG 20 3 0.15 28 0 0 28 0 0.00 . 0 broad.mit.edu 37 8 10335889 10335903 + RNA DEL GGCTGCAGTGGTTGT GGCTGCAGTGGTTGT - novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 GGCTGCAGTGGTTGT GGCTGCAGTGGTTGT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . . . . . TTGTCAGGCTGCA 6 3 0.50 6 0 0 0 0 FBXO16 157574 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 28304723 28304723 + Nonsense_Mutation SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_172366 exon7 c.C808T p.Q270X TGTCCTGCAATTT 60 12 0.20 59 0 0 13 3 0.23 ZBTB10 65986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 81426189 81426189 + Missense_Mutation SNP G G A novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_023929 exon3 c.G1906A p.V636M AGGAATGTGAATG 92 17 0.18 100 0 0 48 20 0.42 NDRG1 10397 mdanderson.org 37 8 134274318 134274318 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001135242 exon5 c.C298A p.Q100K CGTCCTGCTGGCC 31 3 0.10 81 0 0 33 0 0.00 RUSC2 9853 mdanderson.org 37 9 35548378 35548378 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_014806 exon2 c.G1860T p.Q620H CACCCAGGTCTGT 34 3 0.09 40 0 0 41 0 0.00 TJP2 9414 mdanderson.org 37 9 71840238 71840238 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_001170416 exon6 c.G1064T p.G355V GGCTTGGGAGTCA 46 3 0.07 45 0 0 24 0 0.00 . 0 broad.mit.edu 37 9 138398057 138398057 + RNA DEL G G - novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . . . . . CCAGGAGGGGCCC 6 2 0.33 8 0 0 0 0 STARD8 9754 bcgsc.ca 37 X 67940201 67940201 + Missense_Mutation SNP G G C rs201883068 TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . STARD8 NM_001142503 exon8 c.G1985C p.G662A GCACGGGCCAGCC 105 34 0.32 123 13 0.1056910569 282 81 0 0.00 BTK 695 mdanderson.org 37 X 100625019 100625019 + Missense_Mutation SNP G G T novel TCGA-4K-AA1G-01A-11D-A435-10 TCGA-4K-AA1G-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 14124f8f-2370-40de-94e3-012ff511bac1 3644a980-951f-4811-b56c-4d02e52f5252 . . NM_000061 exon5 c.C358A p.L120I TCCTTAGTTCTTC 42 3 0.07 62 0 0 3 0 0.00