Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SCNN1D 6339 broad.mit.edu 37 1 1222192 1222192 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . SCNN1D NM_001130413 exon8 c.C956T p.A319V AGTTTGCCAGGGA 183 4 0.02 279 0 0 60 6 0 0.00 SSU72 29101 mdanderson.org 37 1 1477477 1477477 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 SSU72,caecum,carcinoma,0,1 SSU72 NM_014188 exon5 c.G554A p.R185H AAGGTGCGGCCAC 42 3 0.07 55 0 0 0 1 508 0 0.00 COL8A2 1296 mdanderson.org 37 1 36564848 36564848 + Missense_Mutation SNP T T C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_005202 exon2 c.A434G p.E145G CCTGGCTCCCCCC 23 3 0.13 45 1 0.0222222222 5 0 0.00 SZT2 23334 mdanderson.org 37 1 43908679 43908679 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_015284 exon58 c.G8170T p.G2724C GTACTTGGTCCTG 57 3 0.05 103 0 0 60 0 0.00 ABCA4 24 mdanderson.org 37 1 94528293 94528293 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_000350 exon13 c.C1777A p.P593T CTCTGGGACCAGA 27 3 0.11 47 0 0 0 0 OVGP1 5016 bcgsc.ca 37 1 111957533 111957533 + Silent SNP C C T rs112145355 bycluster TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . OVGP1 NM_002557 exon11 c.G1590A p.Q530Q CACAGACTGATGA 107 17 0.16 94 1 0.0106382979 177 4 0 0.00 VPS45 11311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150053547 150053547 + Missense_Mutation SNP T T G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 VPS45,NS,carcinoma,-2,1 VPS45 NM_007259 exon8 c.T811G p.F271V GATGAATTCTATG 108 15 0.14 99 0 0 -2 1 27 11 0.41 IVL 3713 broad.mit.edu 37 1 152883285 152883285 + Missense_Mutation SNP G G C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 IVL,NS,carcinoma,0,1 IVL NM_005547 exon2 c.G1012C p.E338Q CTGGAGGAGCAGG 111 5 0.05 129 2 0.015503876 100 1 0 0 CHTOP 26097 broad.mit.edu 37 1 153610804 153610804 + Silent SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 CHTOP,NS,carcinoma,+1,1 CHTOP NM_001206612 exon3 c.G99T p.T33T GCCGACGCCAGTG 334 4 0.01 344 0 0 34 1 371 0 0.00 CHRNB2 1141 mdanderson.org 37 1 154544498 154544498 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_000748 exon5 c.C1199T p.A400V GGTTGGCCGGGGC 12 2 0.17 15 0 0 4 0 0.00 APOA1BP 128240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156563324 156563324 + Missense_Mutation SNP T T C rs200378020 bycluster TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_144772 exon5 c.T641C p.I214T TGCCCATTGCCAG 107 11 0.10 110 0 0 385 116 0.30 APOA2 336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161193189 161193189 + Missense_Mutation SNP C C A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001643 exon2 c.G3T p.M1I CAGCTTCATGTTG 94 13 0.14 66 0 0 49 0 0.00 ATP2B4 493 mdanderson.org 37 1 203669390 203669390 + Nonsense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001684 exon5 c.G706T p.E236X ATTGATGAGAGCT 74 4 0.05 86 0 0 19 0 0.00 SRP9 6726 broad.mit.edu 37 1 225976948 225976948 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . SRP9 NM_003133 exon3 c.G148T p.V50L TGTTTGGTGTATA 445 5 0.01 445 0 0 5 78 0 0.00 FRMD4A 55691 hgsc.bcm.edu;broad.mit.edu 37 10 13838519 13838519 + Silent SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 FRMD4A,NS,malignant_melanoma,-1,1 FRMD4A NM_018027 exon5 c.C276A p.P92P AACCACGGGTCCT 115 5 0.04 120 0 0 -1 1 0 0 RASSF4 83937 mdanderson.org 37 10 45479556 45479556 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_032023 exon5 c.G368T p.S123I CAGACAGCTCGGG 42 3 0.07 56 0 0 142 0 0.00 GRK5 2869 mdanderson.org 37 10 121086095 121086095 + Silent SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_005308 exon2 c.C120T p.S40S CATTAGCCAGTGT 36 3 0.08 60 0 0 46 0 0.00 C10orf120 399814 hgsc.bcm.edu 37 10 124459132 124459132 + Silent SNP G G T rs76198528 alternate_allele TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001010912 exon1 c.C175A p.R59R CTCACCGCAACGG 77 4 0.05 82 0 0 0 0 CCDC73 493860 mdanderson.org 37 11 32739669 32739669 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001008391 exon3 c.T160A p.C54S CAATCTGCTCTTC 22 2 0.09 41 0 0 0 0 MADD 8567 mdanderson.org 37 11 47296560 47296560 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 MADD,colon,carcinoma,+1,1 MADD NM_001135944 exon3 c.G509T p.R170L GCTCCCGCAACAG 43 3 0.07 29 0 0 1 1 24 0 0.00 SPTBN2 6712 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 66461270 66461270 + Missense_Mutation SNP G G T rs149464236 alternate_allele TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . SPTBN2 NM_006946 exon22 c.C4566A p.S1522R CTGGACGCTGGGC 93 5 0.05 76 0 0 188 54 0 0.00 CHKA 1119 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 67842260 67842260 + Missense_Mutation SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001277 exon4 c.C554T p.A185V AGAATGGCAAACA 67 5 0.07 100 0 0 18 0 0.00 PDE2A 5138 mdanderson.org 37 11 72288535 72288535 + Missense_Mutation SNP G G T rs17854062 TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_002599 exon31 c.C2719A p.L907I TTGGGAGGCCGCG 25 2 0.08 50 0 0 41 0 0.00 CHORDC1 26973 mdanderson.org 37 11 89935586 89935586 + Missense_Mutation SNP G G C rs1045861 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_012124 exon11 c.C986G p.A329G GTTGTGGCATCTT 74 2 0.03 116 0 0 122 0 0.00 MMP3 4314 mdanderson.org 37 11 102711321 102711321 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_002422 exon5 c.C629A p.T210N AAATTGGTCCCTA 38 3 0.08 80 0 0 0 0 DYNC2H1 79659 mdanderson.org 37 11 103027467 103027467 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001080463 exon26 c.G4095T p.Q1365H AGAACAGACACGC 32 3 0.09 42 0 0 0 0 TMEM25 84866 mdanderson.org 37 11 118403027 118403027 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001144038 exon3 c.G233T p.R78I CCTCAAGACTGCT 37 3 0.08 62 0 0 13 1 0.08 VPS26B 112936 mdanderson.org 37 11 134114860 134114860 + Silent SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_052875 exon5 c.G750T p.L250L CTTCCTGGCCGGG 26 3 0.12 45 0 0 82 0 0.00 GPR162 27239 hgsc.bcm.edu 37 12 6935869 6935869 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 GPR162,caecum,carcinoma,0,1 GPR162 NM_019858 exon5 c.C1267T p.P423S TCTACCCCTCGGG 96 4 0.04 80 0 0 0 1 9 0 0.00 STRAP 11171 mdanderson.org 37 12 16036515 16036515 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_007178 exon2 c.G153T p.W51C AGACTGGATTGGA 46 3 0.07 43 0 0 419 0 0.00 MSRB3 253827 hgsc.bcm.edu;mdanderson.org 37 12 65672601 65672601 + Missense_Mutation SNP G G C rs377713148 alternate_allele TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_198080 exon1 c.G53C p.C18S CCCTCTGCCTCTG 127 6 0.05 108 0 0 5 0 0.00 GLTP 51228 mdanderson.org 37 12 110318081 110318081 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_016433 exon1 c.C99A p.F33L ACCGAAGAAGGGC 35 3 0.09 26 0 0 51 0 0.00 HECTD4 283450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 112605270 112605270 + Silent SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001109662 exon72 c.C11983T p.L3995L TCCCCAGCAGCTG 91 19 0.21 99 0 0 99 30 0.30 RBM19 9904 mdanderson.org 37 12 114374911 114374911 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001146699 exon16 c.G1969A p.A657T CTGGAGCCCACTC 115 5 0.04 111 0 0 42 0 0.00 RPLP0 6175 broad.mit.edu 37 12 120634654 120634654 + Silent SNP A A T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . RPLP0 NM_053275 exon8 c.T876A p.A292A GGCTGCAGCAGCA 313 4 0.01 263 0 0 27 11730 7 0.00 PCDH8 5100 mdanderson.org 37 13 53420269 53420269 + Missense_Mutation SNP A A G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_002590 exon1 c.T2303C p.I768T ATGGCGATGATGG 16 3 0.19 27 0 0 0 0 FANCM 57697 mdanderson.org 37 14 45606273 45606273 + Silent SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_020937 exon2 c.G510T p.G170G TTCAGGGTCTACA 38 3 0.08 48 2 0.0416666667 13 0 0.00 PLEKHH1 57475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 68044798 68044798 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_020715 exon19 c.C2633T p.S878F ATGTGTCCCTGGC 150 32 0.21 116 0 0 83 21 0.25 ADAM21P1 0 broad.mit.edu 37 14 70714357 70714357 + RNA SNP T T G rs370130121 TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . . . . . GTACACTAGGGTC 70 4 0.06 68 3 0.0441176471 0 0 CCDC64B 146439 mdanderson.org 37 16 3080718 3080718 + Silent SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001103175 exon3 c.G594A p.R198R CTCCAGCCGCGTC 46 3 0.07 56 0 0 1 0 0.00 KIAA0430 9665 broad.mit.edu;mdanderson.org 37 16 15719657 15719657 + Splice_Site SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . KIAA0430 NM_014647 exon8 c.C1525T p.Q509X GGCACTGCTAATA 37 13 0.35 36 0 0 154 20 3 0.15 PDP2 57546 mdanderson.org 37 16 66918754 66918754 + Nonsense_Mutation SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_020786 exon2 c.G567A p.W189X GCATTGGCTCAAG 46 3 0.07 82 0 0 7 0 0.00 LRRC37BP1 147172 hgsc.bcm.edu;broad.mit.edu 37 17 28961033 28961033 + RNA SNP T T G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . . . . . CCAGGATATGACT 113 5 0.04 106 0 0 28 0 0.00 SCRN2 90507 mdanderson.org 37 17 45915296 45915296 + Silent SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_138355 exon8 c.C1192T p.L398L CGGCCAGCAGCCC 31 3 0.10 36 0 0 36 0 0.00 HGS 9146 mdanderson.org 37 17 79663412 79663412 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_004712 exon16 c.G1419T p.K473N GGACAAGCTGGCA 46 3 0.07 50 0 0 128 0 0.00 TPGS2 25941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 34378389 34378389 + Missense_Mutation SNP A A C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001271954 exon6 c.T680G p.L227W GTTTACAATGGCA 80 27 0.34 79 0 0 5 1 0.20 SSBP4 170463 mdanderson.org 37 19 18541711 18541711 + Missense_Mutation SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 SSBP4,NS,carcinoma,0,1 SSBP4 NM_001009998 exon5 c.G340A p.A114T ATGGCCGCAGGCT 26 2 0.08 39 0 0 0 1 200 0 0.00 LRFN1 57622 mdanderson.org 37 19 39805736 39805736 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_020862 exon1 c.C241A p.R81S GGCGGCGCACGGC 14 2 0.14 19 0 0 18 0 0.00 SRRM5 100170229 mdanderson.org 37 19 44118004 44118004 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001145641 exon1 c.G1731T p.K577N CAGCAAGGAGAGA 48 3 0.06 74 0 0 4 0 0.00 ERCC1 2067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 45920093 45920093 + Missense_Mutation SNP C C A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001983 exon6 c.G588T p.L196F GAGGATCAATGTG 71 7 0.10 71 0 0 190 48 0.25 LAIR1 3903 broad.mit.edu 37 19 54871676 54871676 + Missense_Mutation SNP G G C rs190462445 bycluster;by1000genomes TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . LAIR1 NM_002287 exon4 c.C368G p.T123S CCAGAGGTTTCTG 97 4 0.04 105 2 0.019047619 44 59 5 0.08 PTCD3 55037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 86361968 86361968 + Missense_Mutation SNP G G C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_017952 exon21 c.G1636C p.V546L CTTCAGGTGGCAT 201 38 0.19 210 0 0 169 15 0.09 ANKRD36BP2 0 broad.mit.edu 37 2 89102605 89102605 + RNA DEL C C - novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . . . . . GGCTTTCATTCTG 6 2 0.33 4 0 0 2 0 0.00 WASH2P 0 broad.mit.edu 37 2 114355774 114355784 + RNA DEL GAGGTGGCTGG GAGGTGGCTGG - novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 GAGGTGGCTGG GAGGTGGCTGG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . . . . . GTCCCCGAGGTGG 10 4 0.40 9 0 0 4 0 0.00 FAM171B 165215 hgsc.bcm.edu 37 2 187559029 187559029 + Silent SNP A A G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_177454 exon1 c.A129G p.Q43Q CATCCAACAGCAG 49 4 0.08 58 0 0 2 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29628225 29628225 + Splice_Site SNP A A G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . FRG1B NR_003579 exon5 c.529-2A>G . TCACTTAGGGGAA 438 21 0.05 431 7 0.0162412993 181 5 0 0.00 EEF1A2 1917 bcgsc.ca 37 20 62119705 62119705 + Silent SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 EEF1A2,colon,carcinoma,-1,1 EEF1A2 NM_001958 exon8 c.C1338A p.G446G GGCGCCGCCGCTC 39 4 0.10 56 0 0 60 1 16 0 0.00 STMN3 50861 mdanderson.org 37 20 62275211 62275211 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 STMN3,NS,carcinoma,-2,1 STMN3 NM_015894 exon3 c.C189A p.D63E GGACAGGTCAGAA 35 3 0.09 43 0 0 -2 1 310 0 0.00 . 0 broad.mit.edu 37 22 18842332 18842332 + RNA SNP C C T rs5747858 TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . . . . . AGACATCGGTGGA 133 12 0.09 111 0 0 0 0 NIPSNAP1 8508 mdanderson.org 37 22 29957542 29957542 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_003634 exon6 c.C532A p.P178T TTCTGGGCTGTGG 51 3 0.06 74 0 0 206 0 0.00 SCAP 22937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 47455365 47455365 + Silent SNP A A G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_012235 exon23 c.T3819C p.S1273S CAGCACAGAGGGC 127 21 0.17 115 0 0 278 71 0.26 BSN 8927 mdanderson.org 37 3 49700906 49700906 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_003458 exon7 c.C11315T p.A3772V GGGCAGCATCACG 38 3 0.08 36 0 0 36 0 0.00 SEMA3G 56920 mdanderson.org 37 3 52475647 52475647 + Silent SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 SEMA3G,colon,carcinoma,0,1 SEMA3G NM_020163 exon6 c.C610A p.R204R CACTTCGGAAGAT 52 3 0.06 60 0 0 0 1 8 0 0.00 MUC4 4585 broad.mit.edu 37 3 195507694 195507694 + Missense_Mutation SNP A A G rs369368122 bycluster TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . MUC4 NM_018406 exon2 c.T10757C p.L3586P GTGACAAGAAGAG 70 11 0.16 75 1 0.0133333333 1505 2 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599340 55599340 + Missense_Mutation SNP T T G rs121913514 alternate_allele TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 KIT,NS,malignant_melanoma,+2,48 KIT NM_000222 exon17 c.T2466G p.N822K TTCTAATTATGTG 89 36 0.40 68 0 0 2 48 541 410 0.76 ART3 419 mdanderson.org 37 4 77003112 77003112 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001130016 exon3 c.G205T p.V69L GATACTGTGTGGG 52 3 0.06 56 0 0 0 0 NR3C2 4306 mdanderson.org 37 4 149357077 149357077 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001166104 exon2 c.C936A p.S312R CGAAGGGCTGGAA 71 5 0.07 109 0 0 0 0 C5orf51 285636 mdanderson.org 37 5 41917162 41917162 + Nonsense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 C5orf51,colon,carcinoma,0,1 C5orf51 NM_175921 exon6 c.G646T p.E216X AGTGGAGAAATGT 50 3 0.06 63 0 0 0 1 18 0 0.00 DND1 373863 mdanderson.org 37 5 140052386 140052386 + Missense_Mutation SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_194249 exon3 c.G248A p.R83H TAGAGGCGGCCCA 15 2 0.13 17 0 0 135 0 0.00 FOXC1 2296 mdanderson.org 37 6 1610746 1610746 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001453 exon1 c.G66T p.E22D CGGCGAGCAGAGC 42 3 0.07 56 0 0 0 0 RUNX2 860 hgsc.bcm.edu 37 6 45390445 45390445 + Silent SNP A A G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 RUNX2_ENST00000352853,lower_third,carcinoma,0,2 RUNX2_ENST00000352853 NM_001024630 exon3 c.A174G p.Q58Q GCAGCAACAGCAG 49 3 0.06 51 0 0 0 2 1 0 0.00 LRRC1 55227 mdanderson.org 37 6 53660068 53660068 + Missense_Mutation SNP T T C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_018214 exon1 c.T14C p.I5T ACTGCATCCCCCT 47 3 0.06 45 0 0 5 0 0.00 MRAP2 112609 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 84772667 84772667 + Missense_Mutation SNP T T G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_138409 exon3 c.T183G p.F61L TATGTTTTTTGTG 146 22 0.15 121 0 0 17 7 0.41 HSF2 3298 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 122744744 122744744 + Silent SNP T T C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_004506 exon10 c.T1089C p.Y363Y GGATTATCTTGAC 60 12 0.20 58 0 0 65 17 0.26 SCAF8 22828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155154403 155154403 + Silent SNP A A T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_014892 exon20 c.A3690T p.V1230V ACCAGTACAGAAT 106 18 0.17 107 0 0 269 75 0.28 TNRC18 84629 mdanderson.org 37 7 5391702 5391702 + Missense_Mutation SNP C C T rs3801048 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001080495 exon17 c.G5218A p.E1740K GGAATTCTTCGTC 127 3 0.02 125 0 0 215 0 0.00 STK17A 9263 mdanderson.org 37 7 43635533 43635533 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_004760 exon2 c.G240T p.K80N TATAAAGAAAGAT 52 3 0.06 65 0 0 71 0 0.00 LHFPL3 375612 hgsc.bcm.edu 37 7 103969251 103969251 + Silent SNP C C T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 LHFPL3,NS,carcinoma,0,1 LHFPL3 NM_199000 exon1 c.C24T p.A8A CGCTGCCGCCGCC 49 3 0.06 46 1 0.0217391304 0 1 0 0 FOXP2 93986 mdanderson.org 37 7 114270000 114270000 + Silent SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 FOXP2,NS,carcinoma,0,6 FOXP2 NM_148898 exon6 c.G612A p.Q204Q ACAACAGCAGCAG 31 3 0.10 24 0 0 0 6 2 0 0.00 ATP6V1H 51606 broad.mit.edu 37 8 54742088 54742088 + Silent SNP A A G novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . ATP6V1H NM_015941 exon4 c.T222C p.A74A TGTTTTAGCACAC 38 4 0.11 18 0 0 66 91 0 0.00 FAM122A 116224 broad.mit.edu 37 9 71395159 71395159 + Missense_Mutation SNP G G A novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . FAM122A NM_138333 exon1 c.G79A p.G27S GGCAGCGGCGGCG 81 3 0.04 66 1 0.0151515152 14 42 0 0.00 ABCA1 19 mdanderson.org 37 9 107554227 107554227 + Missense_Mutation SNP G G T novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_005502 exon43 c.C5810A p.P1937H CCAGGAGGAATGC 46 3 0.07 66 0 0 30 0 0.00 AK1 203 mdanderson.org 37 9 130635029 130635029 + Silent SNP T T C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_000476 exon4 c.A147G p.S49S CGAGCCTGAGCTG 50 3 0.06 83 0 0 34 0 0.00 FAM104B 90736 mdanderson.org 37 X 55172630 55172630 + Nonsense_Mutation SNP G G A rs113263757 bycluster TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001166700 exon3 c.C238T p.Q80X AGAACTGGGGAAA 38 5 0.13 27 1 0.037037037 109 0 0.00 FAM104B 90736 mdanderson.org 37 X 55172645 55172645 + Missense_Mutation SNP C C G rs1047042 bycluster;byfrequency;alternate_allele TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . NM_001166700 exon3 c.G223C p.D75H TTGCATCGGGTTC 38 3 0.08 29 1 0.0344827586 114 0 0.00 . 0 bcgsc.ca;mdanderson.org 37 X 101437560 101437560 + RNA SNP G G C novel TCGA-2X-A9D5-01A-11D-A435-10 TCGA-2X-A9D5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c2d2797f-df6f-4d7d-b19d-5abe92fc9533 e62d817f-988d-403f-919c-116b44eeffc7 . . . . . . GGTGAAGTTTTAT 584 152 0.26 504 0 0 0 0