Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SLC45A1	50651	mdanderson.org	37	1	8385880	8385880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001080397	exon3	c.G493T	p.A165S	CCAGGGGCACTGC		23	3	0.13	28	0	0				0	0				
SEC22B	9554	broad.mit.edu	37	1	145109284	145109292	+	RNA	DEL	AAAAAAAAA	AAAAAAAAA	-	rs34197869		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	AAAAAAAAA	AAAAAAAAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	CGTCTCAAAAAAA		10	3	0.30	6	0	0				0	0				
MUC1	4582	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	155161884	155161884	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001204286	exon2	c.C276A	p.A92A	TTCCGTGGCCGGG		121	5	0.04	68	0	0				6	0	0.00			
CALML3	810	mdanderson.org	37	10	5567450	5567450	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_005185	exon1	c.C402T	p.D134D	CGGAGACGGACAG		47	3	0.06	39	0	0				1	0	0.00			
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	CSGALNACT2,NS,carcinoma,0,5	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT		110	4	0.04	113	2	0.017699115		67	5	11	0	0.00			
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	48429456	48429456	+	Missense_Mutation	SNP	G	G	C	rs139712067	alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004962	exon2	c.C430G	p.R144G	GCGCTCGAGGCCA		69	22	0.32	68	0	0				2	0	0.00			
SLC18A3	6572	broad.mit.edu	37	10	50819027	50819027	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	SLC18A3,NS,carcinoma,0,1	SLC18A3	NM_003055	exon1	c.A241C	p.T81P	GAGCCCACCCTGC		94	12	0.13	88	3	0.0340909091		100	1	0	0				
DHX32	55760	mdanderson.org	37	10	127526784	127526784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_018180	exon10	c.C2054A	p.S685Y	TCAGGAGAGATTT		37	3	0.08	45	0	0				63	0	0.00			
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651442	1651442	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	KRTAP5-5,bladder,carcinoma,0,4	KRTAP5-5	NM_001001480	exon1	c.G372C	p.G124G	TGGGGGGTCCAAG		47	6	0.13	37	2	0.0540540541		0	4	0	0				
RTN4RL2	349667	mdanderson.org	37	11	57243909	57243909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_178570	exon3	c.G788T	p.W263L	ACCCCTGGGCGTG		10	2	0.20	12	0	0				0	0				
MARK2	2011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63662685	63662685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001163296	exon2	c.G109A	p.G37S	ATTCGGGGCCGCA		93	16	0.17	79	0	0				4	2	0.50			
ATG2A	23130	mdanderson.org	37	11	64684506	64684506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_015104	exon1	c.C102A	p.S34R	GTCCAGGCTGAGG		46	3	0.07	40	0	0				0	0				
SART1	9092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65733919	65733919	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_005146	exon9	c.G1080A	p.L360L	TGGCCTGCGGGAG		82	36	0.44	50	0	0				163	64	0.39			
PPP6R3	55291	mdanderson.org	37	11	68377455	68377455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	PPP6R3_ENST00000393801,rectum,carcinoma,+1,2	PPP6R3_ENST00000393801	NM_001164160	exon24	c.C2552T	p.A851V	AGTGCGCGGCGCC		20	2	0.10	38	0	0		1	2	40	0	0.00			
TRPC6	7225	mdanderson.org	37	11	101454180	101454180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004621	exon1	c.G55A	p.A19T	CTCCGGCAGCGCC		20	2	0.10	19	0	0				0	0				
C11orf92	399948	mdanderson.org	37	11	111167557	111167557	+	RNA	SNP	A	A	T	rs6589218	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	GGGGCAAGGCCTA		104	3	0.03	126	0	0				0	0				
FOXM1	2305	broad.mit.edu	37	12	2968305	2968305	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	FOXM1	NM_202002	exon10	c.T1905C	p.P635P	CTTAAAAGGTCCT		89	3	0.03	16	0	0		62		281	3	0.01			
KLRC3	3823	broad.mit.edu	37	12	10568291	10568291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	KLRC3	NM_007333	exon6	c.C690A	p.S230R	TCTAAAGCTTATG		336	8	0.02	106	2	0.0188679245		25		0	0				
KLRC3	3823	broad.mit.edu	37	12	10569302	10569302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	KLRC3	NM_007333	exon5	c.C551A	p.P184Q	ACCCATGGATGAT		1156	11	0.01	333	0	0		25		0	0				
TAS2R30	259293	mdanderson.org	37	12	11285924	11285924	+	Missense_Mutation	SNP	C	C	T	rs2597924	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001097643	exon1	c.G920A	p.R307H	TGGAGACGAAGGC		305	19	0.06	105	1	0.0095238095				1	1	1.00			
PRB2	653247	broad.mit.edu	37	12	11546320	11546322	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	TTG	TTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	PRB2	NM_006248	exon3	c.690_692del	p.230_231del	TGGGACTTGTTGT		1258	8	0.01	354	0	0		168		1	0	0.00			
WBP11	51729	broad.mit.edu	37	12	14947586	14947586	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	WBP11,right_lower_lobe,carcinoma,0,2	WBP11	NM_016312	exon7	c.T606C	p.P202P	AGGGGGAGGGCCA		574	8	0.01	161	2	0.0124223602		66	2	236	1	0.00			
ITPR2	3709	broad.mit.edu	37	12	26568269	26568269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ITPR2	NM_002223	exon51	c.G7273A	p.V2425I	TATCAACTTCCAT		534	5	0.01	142	0	0		270		12	0	0.00			
KIF21A	55605	broad.mit.edu	37	12	39735383	39735383	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		109	4	0.04	74	0	0		238	2	0	0				
KRT2	3849	mdanderson.org	37	12	53045777	53045777	+	Silent	SNP	G	G	C	rs11835758	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_000423	exon1	c.C150G	p.G50G	GCCCCCGCCACCA		50	2	0.04	37	0	0				0	0				
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57883693	57883693	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004990	exon5	c.A429G	p.L143L	ATCTCTAGCCGAC		234	45	0.19	126	0	0				42	14	0.33			
CDKL1	27109	bcgsc.ca	37	14	50798935	50798936	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	RP11-247L20.2,NS,carcinoma,-2,2	CDKL1	.	.	.	.	TTCCAACTCTCTG		79	21	0.27	48	0	0		50	2	0	0				
VTI1B	10490	mdanderson.org	37	14	68118105	68118105	+	Silent	SNP	A	A	G	rs115023419	bycluster;by1000genomes	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_006370	exon6	c.T696C	p.H232H	AGTTCAATGGCTG		57	3	0.05	45	0	0	0			496	0	0.00			
REREP3	646396	hgsc.bcm.edu;bcgsc.ca	37	15	22546705	22546705	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	GCTGCCGTTCACC		33	7	0.21	29	0	0				3	0	0.00			
SERF2	10169	broad.mit.edu	37	15	44085843	44085843	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	SERF2	NM_001199875	exon3	c.T186C	p.H62H	CCTTCATCCCCCT		155	5	0.03	106	0	0		7		74	0	0.00			
MEF2A	4205	hgsc.bcm.edu	37	15	100211846	100211846	+	Missense_Mutation	SNP	G	G	A	rs75705863	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	MEF2A_ENST00000354410,NS,carcinoma,+1,1	MEF2A_ENST00000354410	NM_005587	exon5	c.G380A	p.R127Q	TGATGCGGAATCA		49	2	0.04	14	0	0		1	1	0	0				
SYNGR3	9143	mdanderson.org	37	16	2042125	2042125	+	Missense_Mutation	SNP	G	G	A	rs367678643		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004209	exon2	c.G250A	p.A84T	TGCGCCGCCTTCC		39	3	0.08	22	0	0				2	0	0.00			
SRRM2	23524	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	2819139	2819139	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_016333	exon12	c.C7875T	p.S2625S	CTCCTCCTCTTCT		89	5	0.06	69	0	0				536	1	0.00			
SEPT12	124404	mdanderson.org	37	16	4837595	4837595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001154458	exon2	c.A52G	p.S18G	TGGGGCTGGAGGG		38	3	0.08	18	0	0				0	0				
INO80E	283899	bcgsc.ca	37	16	30016646	30016652	+	Frame_Shift_Del	DEL	TAAGATG	TAAGATG	-	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	TAAGATG	TAAGATG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	INO80E	NM_173618	exon7	c.618_624del	p.206_208del	ACCCCCTAAGATG		144	0	0.00	124	0	0		26		58	0	0.00			
ALDOA	226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30080966	30080966	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001243177	exon8	c.G933A	p.L311L	AGCGCTGCGCCGC		33	13	0.39	46	0	0				3837	1446	0.38			
ITGAM	3684	mdanderson.org	37	16	31284807	31284807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_000632	exon8	c.G826T	p.D276Y	GAGGCAGACAGAG		46	3	0.07	46	0	0				1	0	0.00			
HPR	3250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72110949	72110949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_020995	exon5	c.A1016G	p.H339R	TCCAGCACTGGGT		63	13	0.21	61	0	0				8	4	0.50			
CHST5	23563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75563575	75563575	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	CHST5,NS,carcinoma,-2,1	CHST5	NM_024533	exon3	c.G708A	p.A236A	CGGGCCCGCCGCC		47	9	0.19	32	0	0		-2	1	0	0				
TMEM107	84314	broad.mit.edu	37	17	8079145	8079145	+	Silent	SNP	G	G	T	rs369840510	alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	TMEM107	NM_032354	exon3	c.C204A	p.G68G	AAAGAGGCCCAGG		133	4	0.03	93	0	0		16		33	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		248	21	0.08	170	13	0.0764705882				36	16	0.44			
FLJ36000	0	hgsc.bcm.edu	37	17	21904891	21904891	+	RNA	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	GAACGCTGGCCTC		57	8	0.14	42	0	0				0	0				
TBC1D3F	84218	bcgsc.ca	37	17	36288278	36288278	+	Missense_Mutation	SNP	T	T	A	rs79200053	bycluster;byfrequency	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	TBC1D3F	NM_032258	exon6	c.T364A	p.L122M	ATGAAGTTGAAAA		83	13	0.16	58	1	0.0172413793		14		33	0	0.00			
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	TTCCACAAGTCTC		141	6	0.04	58	0	0				78	1	0.01			
OGFOD3	79701	mdanderson.org	37	17	80361815	80361815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	C17orf101_ENST00000313056,right_lower_lobe,carcinoma,+2,2	C17orf101_ENST00000313056	NM_175902	exon7	c.A697G	p.K233E	TCACCTTGTCCAC		27	3	0.11	17	0	0		2	2	76	0	0.00			
SEMA6B	10501	bcgsc.ca	37	19	4550280	4550280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	SEMA6B,colon,carcinoma,0,1	SEMA6B	NM_032108	exon12	c.G1126A	p.G376R	AGCACCCGGGCCT		76	4	0.05	65	0	0		51	1	57	0	0.00			
SSBP4	170463	mdanderson.org	37	19	18544013	18544013	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_032627	exon15	c.C981T	p.N327N	CGTGAACGGATCC		44	3	0.07	22	0	0				137	0	0.00			
UPF1	5976	mdanderson.org	37	19	18971687	18971687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_002911	exon17	c.G2353A	p.A785T	GCAGGCGCCAAGC		42	3	0.07	37	0	0				41	0	0.00			
HAUS5	23354	mdanderson.org	37	19	36109839	36109839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_015302	exon13	c.A1067G	p.K356R	AGCTCAAGGCCCT		44	3	0.07	52	0	0				19	0	0.00			
LHCGR	3973	mdanderson.org	37	2	48982764	48982764	+	Missense_Mutation	SNP	A	A	T	rs4539842	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_000233	exon1	c.T47A	p.L16Q	TGCAGCAGCAGCA		11	3	0.27	13	0	0				0	0				
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175614728	175614728	+	Silent	SNP	G	G	A	rs141733086	byfrequency;alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001039523	exon8	c.C1023T	p.I341I	TGTGTTGATGACG		145	39	0.27	102	0	0				4	0	0.00			
THAP4	51078	mdanderson.org	37	2	242573038	242573038	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_015963	exon2	c.A534G	p.G178G	GGCCAGTCCATCT		48	3	0.06	34	0	0				61	0	0.00			
PREX1	57580	mdanderson.org	37	20	47324813	47324813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_020820	exon6	c.C768A	p.H256Q	TTCGATGTGGGAC		47	3	0.06	35	0	0				10	0	0.00			
RNF114	55905	mdanderson.org	37	20	48558160	48558160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	RNF114,NS,carcinoma,0,1	RNF114	NM_018683	exon2	c.G203A	p.R68H	TGTGTCGCAGCGC		47	3	0.06	38	0	0		0	1	132	0	0.00			
SON	6651	hgsc.bcm.edu	37	21	34923934	34923934	+	Silent	SNP	T	T	C	rs200724919		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	SON_ENST00000300278,NS,carcinoma,0,4	SON_ENST00000300278	NM_032195	exon3	c.T2397C	p.S799S	AACCAGTTCCATG		152	8	0.05	84	2	0.0238095238		0	4	7	0	0.00			
ERG	2078	ucsc.edu;bcgsc.ca	37	21	39947610	39947610	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ERG	NM_004449	exon3	c.C15A	p.V5V	GTCCGGGACAGTC		28	4	0.14	28	0	0		78		1	0	0.00			
.	644768	bcgsc.ca	37	22	16954848	16954848	+	RNA	SNP	A	A	G	rs78362732		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	AGCCCAACTCGTA		93	9	0.10	54	0	0				0	0				
ZNF74	7625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20759727	20759727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_003426	exon5	c.A404T	p.Q135L	CGGCCCAGGAGCC		196	23	0.12	108	0	0				6	4	0.67			
OSBP2	23762	mdanderson.org	37	22	31285598	31285598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_030758	exon7	c.G1598T	p.R533L	TCGGCCGGGAGCT		77	4	0.05	45	0	0				13	0	0.00			
RPN1	6184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128344482	128344482	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_002950	exon8	c.C1290T	p.F430F	CTTGTTGAACGTG		84	24	0.29	66	0	0				414	124	0.30			
MUC4	4585	ucsc.edu	37	3	195510666	195510666	+	Silent	SNP	G	G	A	rs2948679		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	MUC4	NM_018406	exon2	c.C7785T	p.V2595V	GTCGGTGACAGGA		68	6	0.09	38	2	0.0526315789		1505		0	0				
ANKRD17	26057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73958006	73958006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ANKRD17	NM_032217	exon29	c.A5339G	p.E1780G	GTTGATTCAGTGC		68	25	0.37	71	1	0.014084507		214		0	0				
CD14	929	mdanderson.org	37	5	140011835	140011835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001174105	exon3	c.C734T	p.A245V	GCCGCCGCCAGTG		39	3	0.08	35	0	0				300	1	0.00			
EBF1	1879	broad.mit.edu	37	5	158523398	158523398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	EBF1,NS,carcinoma,+1,1	EBF1	NM_024007	exon3	c.A308G	p.K103R	TTGGTCTTTTCGC		70	3	0.04	49	0	0		110	1	0	0				
.	0	broad.mit.edu	37	5	179078735	179078735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	CTCCCCTGGCTCC		95	7	0.07	78	1	0.0128205128				0	0				
MUC21	394263	mdanderson.org	37	6	30954393	30954393	+	Silent	SNP	T	T	C	rs9262330	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001010909	exon2	c.T441C	p.A147A	TGGGGCTAGCACA		53	3	0.06	39	1	0.0256410256				0	0				
MOCS1	4337	mdanderson.org	37	6	39883820	39883820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001075098	exon4	c.G575A	p.R192H	TTCCTGCGGACAA		55	3	0.05	43	0	0				9	0	0.00			
FAM20C	56975	mdanderson.org	37	7	195682	195682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_020223	exon2	c.C734T	p.A245V	ACCCGGCCATCGA		40	3	0.08	34	0	0				41	0	0.00			
PMS2P4	0	broad.mit.edu	37	7	66767610	66767611	+	RNA	INS	-	-	G	rs71293166	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	GGACTGCTTTTTT		15	5	0.33	13	0	0				1	0	0.00			
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121682713	121682713	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_002851	exon22	c.G5853A	p.Q1951Q	GTTGCAGCAGATT		133	34	0.26	160	0	0				7	1	0.14			
LURAP1L	286343	hgsc.bcm.edu	37	9	12775864	12775864	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_203403	exon1	c.C150T	p.G50G	TGGTGGCGGCGGC		69	7	0.10	48	0	0				3	0	0.00			
SET	6418	mdanderson.org	37	9	131446269	131446269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001122821	exon1	c.G95T	p.G32V	CTGCAGGCTTGCC		41	3	0.07	24	0	0				243	0	0.00			
CELP	0	broad.mit.edu	37	9	135962465	135962465	+	RNA	DEL	T	T	-	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	TGCCCCTGTGCCC		7	4	0.57	8	0	0				11	2	0.18			
SLC34A3	142680	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140129149	140129149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	SLC34A3	NM_001177317	exon12	c.C1301T	p.A434V	CCCTGGCCAGCCC		31	5	0.16	27	0	0		32		1	0	0.00			
ZDHHC15	158866	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	74698772	74698772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ZDHHC15	NM_144969	exon3	c.C212A	p.T71N	CAGTAGGTCCAGG		73	5	0.07	28	0	0		65		6	0	0.00			
HCFC1	3054	bcgsc.ca	37	X	153217302	153217302	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	HCFC1	NM_005334	exon20	c.G5250A	p.T1750T	AGTGGCCGTTGAG		67	4	0.06	32	0	0		284		44	0	0.00