Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TAS1R3 83756 mdanderson.org 37 1 1269178 1269178 + Silent SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_152228 exon6 c.C1893T p.A631A CCCTGCCCGATGC 41 3 0.07 39 0 0 1 0 0.00 PRDM16 63976 mdanderson.org 37 1 3329295 3329295 + Missense_Mutation SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a PRDM16,colon,carcinoma,0,1 PRDM16 NM_022114 exon9 c.C2534T p.A845V GCCCGGCGCGGAT 37 3 0.08 30 0 0 0 1 1 0 0.00 TP73 7161 mdanderson.org 37 1 3649534 3649534 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_005427 exon14 c.G1802T p.G601V GCGGCGGCCCAGG 32 3 0.09 24 0 0 1 0 0.00 CROCCP2 84809 hgsc.bcm.edu 37 1 16953145 16953145 + RNA SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . ATCACCGCAGAAA 48 12 0.25 29 0 0 0 0 . 343477 bcgsc.ca 37 1 92109629 92109629 + RNA SNP G G A rs12042591 bycluster;byhapmap TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . GAAAACGATAAAT 45 5 0.11 44 0 0 0 0 CCDC18 0 broad.mit.edu 37 1 93744310 93744310 + RNA DEL T T - novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . CCDC18 . . . . TGCAAATTTTTTT 8 3 0.38 5 0 0 93 2 0 0.00 . 0 broad.mit.edu 37 1 142806243 142806243 + RNA SNP G G A rs200190101 TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . TCTCAAGCATTTT 210 12 0.06 148 0 0 0 0 . 653259 bcgsc.ca 37 10 47727808 47727809 + Splice_Site INS - - C novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . ACAGTTAACTCAT 26 3 0.12 69 0 0 0 0 SYCE1 93426 broad.mit.edu;ucsc.edu;mdanderson.org 37 10 135369120 135369120 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . SYCE1 NM_001143763 exon11 c.C811A p.Q271K GCTGCTGTTGTTG 45 4 0.09 30 0 0 81 3 0 0.00 ASCL2 430 mdanderson.org 37 11 2291319 2291319 + Missense_Mutation SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_005170 exon1 c.G244A p.A82T TGCTGGCGCCGCC 14 2 0.14 13 0 0 0 0 OR51A4 401666 ucsc.edu 37 11 4967831 4967831 + Missense_Mutation SNP T T C rs61729915 bycluster;byfrequency TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . OR51A4 NM_001005329 exon1 c.A500G p.N167S CTCAAGTTTCTTA 85 32 0.38 293 40 0.1365187713 73 0 0 GTF2H1 2965 mdanderson.org 37 11 18387386 18387386 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001142307 exon16 c.G1617A p.W539X CACATGGCAGTCA 50 3 0.06 51 0 0 75 0 0.00 MYBPC3 4607 mdanderson.org 37 11 47355259 47355259 + Silent SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_000256 exon28 c.C3039A p.P1013P TGCCAGGGGCTGC 23 3 0.13 46 0 0 1 0 0.00 TCIRG1 10312 mdanderson.org 37 11 67817527 67817527 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_006019 exon17 c.G2112T p.E704D AGAGGAGGCCGAG 49 3 0.06 36 0 0 87 0 0.00 SPCS2 9789 broad.mit.edu 37 11 74680617 74680617 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . SPCS2 NM_014752 exon4 c.G367T p.V123L TATTTTGTGATGA 86 3 0.03 129 0 0 17 18 0 0.00 NCAM1 4684 mdanderson.org 37 11 113133588 113133588 + Missense_Mutation SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001076682 exon20 c.G2227A p.A743T AATTCTGCATCCT 111 5 0.05 124 0 0 0 0 DCP1B 196513 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 12 2062350 2062350 + Missense_Mutation SNP C C G novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a DCP1B,bladder,carcinoma,0,13 DCP1B NM_152640 exon7 c.G756C p.Q252H CTGCTGCTGGTGG 88 6 0.07 23 0 0 0 13 84 0 0.00 SETD1B 23067 broad.mit.edu;mdanderson.org 37 12 122257461 122257461 + Silent SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . SETD1B NM_015048 exon11 c.G3441A p.E1147E AGAAGAGGAGGAG 51 3 0.06 45 0 0 105 17 0 0.00 TPTE2P1 0 broad.mit.edu 37 13 25525716 25525716 + RNA DEL A A - novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . AGAAACAAAAAAA 11 6 0.55 9 0 0 0 0 INTS6 26512 mdanderson.org 37 13 51961633 51961633 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_012141 exon7 c.G783A p.W261X GCTATGCCAAGGC 49 3 0.06 56 0 0 5 0 0.00 CUL4A 8451 mdanderson.org 37 13 113864355 113864355 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001008895 exon2 c.G217T p.V73L CGGGCCGTGCAGA 38 3 0.08 56 0 0 56 0 0.00 ANG 283 broad.mit.edu 37 14 21162161 21162161 + Silent SNP T T G novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . ANG NM_001097577 exon2 c.T438G p.R146R CCGTCGTCCGTAA 175 4 0.02 187 0 0 8 14 0 0.00 ARHGEF40 55701 mdanderson.org 37 14 21542129 21542129 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_018071 exon3 c.G240A p.W80X GGGGTGGCCGCTC 44 3 0.07 46 0 0 7 0 0.00 STON2 85439 mdanderson.org 37 14 81837529 81837529 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001256430 exon5 c.C374A p.A125D GGTAGGGCTGGGG 37 3 0.08 75 0 0 0 0 . 0 bcgsc.ca 37 14 89577485 89577485 + RNA SNP A A G novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . GAGAAGACAATGA 40 4 0.10 40 0 0 0 0 CAPN3 825 broad.mit.edu 37 15 42684848 42684848 + Silent SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . CAPN3 NM_000070 exon7 c.G957T p.P319P CATTCCGGTTCAG 121 4 0.03 153 0 0 172 3 0 0.00 ARIH1 25820 broad.mit.edu 37 15 72767235 72767235 + Silent SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . ARIH1 NM_005744 exon1 c.C255T p.G85G CGGCGGCGGTGGT 42 4 0.10 54 0 0 42 0 0 RASGRF1 5923 hgsc.bcm.edu;broad.mit.edu 37 15 79284128 79284128 + Silent SNP G G T rs147869279 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a RASGRF1,colon,carcinoma,0,1 RASGRF1 NM_002891 exon22 c.C3084A p.G1028G CTTCACGCCTTCA 94 4 0.04 102 0 0 0 1 0 0 . 0 broad.mit.edu 37 16 67326 67326 + Silent SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . GGAGCTGACAGAG 37 6 0.16 21 0 0 10 0 0.00 ZNF598 90850 mdanderson.org 37 16 2052283 2052283 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a ZNF598,NS,carcinoma,-1,1 ZNF598 NM_178167 exon7 c.C819A p.S273R GGCGCGGCTGCGA 32 3 0.09 17 0 0 -1 1 92 0 0.00 LOC653786 0 broad.mit.edu 37 16 22579566 22579569 + RNA DEL ATTC ATTC - novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 ATTC ATTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . GGGTTAATTCATC 70 7 0.10 81 11 0.1358024691 0 0 KIF22 3835 mdanderson.org 37 16 29809712 29809712 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_007317 exon3 c.G284T p.G95V TCTATGGGGAGAG 47 3 0.06 49 0 0 178 0 0.00 FBXL19 54620 mdanderson.org 37 16 30941668 30941668 + Missense_Mutation SNP C C A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001099784 exon7 c.C1124A p.P375H TGCGCCCTGGCAG 29 3 0.10 27 0 0 24 0 0.00 FAM65A 79567 mdanderson.org 37 16 67576061 67576061 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001193523 exon13 c.G1432T p.A478S GTAGATGCTGCCT 52 3 0.06 70 1 0.0142857143 18 0 0.00 SMTNL2 342527 mdanderson.org 37 17 4500213 4500213 + Missense_Mutation SNP G G A rs200110141 by1000genomes TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001114974 exon6 c.G1048A p.A350T GCCAGCGCCAGCA 42 3 0.07 37 0 0 0 9 0 0.00 RPAIN 84268 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 5324644 5324644 + Missense_Mutation SNP G G C novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . RPAIN NM_001160246 exon2 c.G110C p.R37P ACAGCCGGGACAG 127 13 0.10 98 1 0.0102040816 24 207 25 0.12 CHD3 1107 broad.mit.edu 37 17 7812537 7812537 + Missense_Mutation SNP A A C novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a CHD3,NS,carcinoma,0,1 CHD3 NM_001005271 exon37 c.A5648C p.H1883P CGGCGCACCCCGC 101 20 0.20 63 9 0.1428571429 169 1 41 2 0.05 ARHGAP23 57636 mdanderson.org 37 17 36666995 36666995 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001199417 exon24 c.G4263T p.E1421D CAACGAGTGGAAG 33 3 0.09 20 0 0 2 0 0.00 TOP2A 7153 broad.mit.edu 37 17 38555154 38555154 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a TOP2A,colon,carcinoma,0,1 TOP2A NM_001067 exon26 c.C3324A p.N1108K CTTTTCGTTGTCA 165 4 0.02 136 0 0 124 1 184 0 0.00 LRRC59 55379 broad.mit.edu 37 17 48460490 48460490 + Silent SNP T T C novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . LRRC59 NM_018509 exon7 c.A783G p.G261G CAGCCCTCCCGCC 101 22 0.22 69 17 0.2463768116 23 339 32 0.09 RPTOR 57521 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 78858821 78858821 + Missense_Mutation SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a RPTOR,rectum,carcinoma,0,1 RPTOR NM_020761 exon17 c.C1856T p.A619V GCGCAGCGGTCTT 219 7 0.03 174 0 0 122 1 19 1 0.05 rescued with RNA-seq C17orf70 80233 mdanderson.org 37 17 79507958 79507958 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_025161 exon9 c.C2533T p.Q845X GGGTCTGCACCTC 32 3 0.09 15 0 0 91 0 0.00 CTAGE1 64693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 19997302 19997302 + Missense_Mutation SNP G G C novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_172241 exon1 c.C473G p.A158G GCTTCAGCTACTT 82 26 0.32 113 0 0 1 0 0.00 PHLPP1 23239 mdanderson.org 37 18 60384158 60384158 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_194449 exon1 c.G1242T p.Q414H GCCTCAGCCGCAG 16 2 0.13 12 0 0 2 0 0.00 FBL 2091 hgsc.bcm.edu 37 19 40325395 40325395 + Missense_Mutation SNP T T C novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a FBL,NS,carcinoma,+1,1 FBL NM_001436 exon8 c.A854G p.K285R TGCATCTTTTTCA 100 4 0.04 105 1 0.0095238095 1 1 1842 1 0.00 BLVRB 645 mdanderson.org 37 19 40964299 40964299 + Missense_Mutation SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_000713 exon2 c.G233A p.R78H TCATTGCGGGTGC 29 3 0.10 50 0 0 126 0 0.00 SPTBN4 57731 broad.mit.edu 37 19 41073695 41073695 + Missense_Mutation SNP A A G novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . SPTBN4 NM_020971 exon31 c.A6463G p.R2155G TATGAAAGGGGCT 77 19 0.25 91 13 0.1428571429 213 0 0 RPS19 6223 mdanderson.org 37 19 42364899 42364899 + Missense_Mutation SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001022 exon2 c.G55A p.A19T GCTCTGGCAGCCT 44 3 0.07 69 0 0 9413 2 0.00 BLOC1S3 388552 broad.mit.edu 37 19 45682769 45682769 + Frame_Shift_Del DEL A A - novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . BLOC1S3 NM_212550 exon2 c.215delA p.E72fs AGCCGGAACCGAC 6 2 0.33 5 0 0 4 0 0 NRBP1 29959 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 27664455 27664455 + Missense_Mutation SNP C C T rs374507004 TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_013392 exon17 c.C1469T p.A490V AGTTGGCGGCTGA 118 5 0.04 76 0 0 715 0 0.00 PRPF40A 55660 broad.mit.edu 37 2 153573929 153573929 + Missense_Mutation SNP G G A rs371312661 alternate_allele TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . PRPF40A NM_017892 exon1 c.C25T p.R9W TGCTCCGCCGGCG 176 4 0.02 165 0 0 149 43 0 0.00 BAGE 85319 broad.mit.edu 37 21 11058613 11058614 + RNA INS - - A rs377480117 bycluster TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . TTTTTTTAAAGCA 7 2 0.29 6 0 0 0 0 SLC7A4 6545 mdanderson.org 37 22 21385978 21385978 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_004173 exon2 c.C124A p.L42M GAGTCAGGTCCAG 46 3 0.07 59 0 0 0 0 TPRXL 348825 hgsc.bcm.edu 37 3 14106354 14106354 + RNA SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a TPRXL,NS,carcinoma,0,1 TPRXL . . . . CAGCAGCCCCAGC 11 5 0.45 6 1 0.1666666667 0 1 3 2 0.67 IFT122 55764 mdanderson.org 37 3 129239031 129239031 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_052985 exon31 c.G3802T p.E1268X CATTCTGAGGACT 50 3 0.06 40 0 0 58 0 0.00 PRDM8 56978 mdanderson.org 37 4 81123665 81123665 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001099403 exon4 c.G1049T p.C350F TGGTGTGCACACC 19 2 0.11 27 0 0 1 0 0.00 DSPP 1834 bcgsc.ca 37 4 88537036 88537036 + Silent SNP C C T rs367922244 TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a DSPP,NS,carcinoma,0,1 DSPP NM_014208 exon5 c.C3222T p.D1074D CAGTGACAGCAGC 72 12 0.17 117 1 0.0085470085 174 1 0 0 . 152905 bcgsc.ca 37 4 146296711 146296711 + RNA SNP C C T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . CATCGGCGGCCAC 52 20 0.38 95 0 0 6 0 0.00 MYO10 4651 mdanderson.org 37 5 16673975 16673975 + Missense_Mutation SNP C C T rs25901 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_012334 exon36 c.G4988A p.S1663N ATCTCGCTTCCTG 64 2 0.03 92 0 0 65 0 0.00 APBB3 10307 broad.mit.edu 37 5 139938282 139938282 + Missense_Mutation SNP A A G novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . APBB3 NM_006051 exon12 c.T1370C p.L457P AGGGGGAGGGGCA 286 5 0.02 304 2 0.0065789474 34 11 0 0.00 EXOC2 55770 mdanderson.org 37 6 598057 598057 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_018303 exon10 c.C1037A p.T346K GATGGTGTCTCAA 85 4 0.05 95 0 0 22 0 0.00 ZNF322 79692 broad.mit.edu 37 6 26637624 26637624 + Silent SNP T T C novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_001242797 exon5 c.A1158G p.K386K AAGACCTTTTTCA 680 7 0.01 762 0 0 13 0 0.00 CUTA 51596 broad.mit.edu 37 6 33384432 33384432 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . CUTA NM_001014433 exon6 c.C592A p.P198T ATCATGGCAGGAC 206 4 0.02 247 0 0 5 218 0 0.00 GJA1 2697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 121768358 121768358 + Missense_Mutation SNP A A G novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . NM_000165 exon2 c.A365G p.N122S GTGTCAATGTGGA 168 40 0.24 131 0 0 218 49 0.22 MTHFD1L 25902 broad.mit.edu 37 6 151413631 151413631 + Missense_Mutation SNP G G T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . MTHFD1L NM_001242767 exon27 c.G2879T p.R960L CCACCCGGCCCTG 117 4 0.03 101 0 0 75 106 0 0.00 CCT6P3 0 broad.mit.edu 37 7 64528813 64528814 + RNA INS - - T novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . CTGTAACTTTTTT 52 8 0.15 16 0 0 1 0 0.00 CCT6P3 0 broad.mit.edu 37 7 64530103 64530103 + RNA SNP G G A rs369683052 bycluster TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . TGCTTGGGACATG 113 6 0.05 44 1 0.0227272727 54 0 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . CCGGGGTCCTTGA 348 7 0.02 122 0 0 0 0 BUD31 8896 hgsc.bcm.edu;broad.mit.edu 37 7 99015089 99015089 + Frame_Shift_Del DEL C C - novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . BUD31 NM_003910 exon5 c.254delA p.D85fs TGCAGACAAAAAC 119 14 0.12 53 0 0 12 359 0 0.00 PRKDC 5591 broad.mit.edu 37 8 48746799 48746799 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . PRKDC . . . . CCAGCCTTTTTTT 186 8 0.04 132 0 0 394 115 0 0.00 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 3047 3047 + RNA SNP G G A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . TTCAACGATTAAA 14 14 1.00 12 0 0 0 0 . 84443 broad.mit.edu 37 X 106846471 106846471 + Silent SNP A A G novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . . . . . . GCAGCAACAACAA 192 5 0.03 114 1 0.0087719298 3 0 0.00 TXLNG2P 0 broad.mit.edu 37 Y 21761906 21761907 + RNA INS - - A novel TCGA-2G-AAKM-01A-11D-A42Y-10 TCGA-2G-AAKM-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a8473a77-81c3-414f-b0a5-86648ae24892 b3877f2d-d476-43dd-8e0c-008ad1e0029a . TXLNG2P . . . . AAGTGGGAAAAAA 9 4 0.44 8 0 0 4 0 0