Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PADI4 23569 broad.mit.edu 37 1 17690071 17690071 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . PADI4 NM_012387 exon16 c.G1813A p.V605I GGGCCCGTCATCA 199 4 0.02 212 0 0 70 3 0 0.00 HSPG2 3339 mdanderson.org 37 1 22149853 22149853 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_005529 exon97 c.C13132A p.H4378N CGCGGTGCTGCAG 26 3 0.12 33 0 0 136 0 0.00 BAI2 576 broad.mit.edu 37 1 32222329 32222329 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . BAI2 NM_001703 exon4 c.C109A p.P37T CACTGGGGGCGGG 216 4 0.02 195 0 0 128 1 0 0.00 C1orf173 127254 mdanderson.org 37 1 75086440 75086440 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001002912 exon8 c.C978A p.Y326X GCCTTTGTAGACA 123 5 0.04 130 0 0 0 0 LHX8 431707 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 75602877 75602877 + Silent SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001001933 exon4 c.C198A p.S66S GGGCTCCGGCTGC 255 18 0.07 273 0 0 13 1 0.08 AMY1A 278 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 104297234 104297234 + Missense_Mutation SNP G G C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 AMY1C,NS,carcinoma,0,1 AMY1A NM_001008221 exon7 c.G992C p.W331S CCTTCTGGGATGC 864 20 0.02 937 0 0 2 1 0 0 EPS8L3 79574 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 110300123 110300123 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_139053 exon11 c.C952T p.L318F TGAAGAGGATGTG 119 11 0.09 123 0 0 0 0 NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + Splice_Site SNP G G A rs75226570 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . NBPF10 . . . . ACAACAGTAAGTT 25 4 0.16 36 0 0 221 0 0 APOA2 336 hgsc.bcm.edu;bcgsc.ca 37 1 161192313 161192313 + Splice_Site SNP C C T rs76162486 bycluster TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001643 exon5 c.186-1G>A . TAAGACCTGGATA 161 8 0.05 196 0 0 0 0 TNR 7143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 175328773 175328773 + Silent SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_003285 exon15 c.C2949T p.Y983Y AATGACGTAGTTC 113 11 0.10 132 0 0 0 0 C1orf35 79169 mdanderson.org 37 1 228288913 228288913 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_024319 exon8 c.C711A p.C237X CTTACAGCAGGGG 44 3 0.07 65 0 0 102 0 0.00 OBSCN 84033 hgsc.bcm.edu 37 1 228503691 228503691 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 OBSCN,colon,carcinoma,0,1 OBSCN NM_001271223 exon61 c.16026delC p.N5342fs GAGAACGCCGAGG 151 10 0.07 187 0 0 2142 0 0 OBSCN 84033 bcgsc.ca 37 1 228503692 228503692 + Missense_Mutation SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . OBSCN NM_001271223 exon61 c.C16028A p.A5343D AGAACGCCGAGGT 154 12 0.08 187 0 0 2142 0 0 GNG4 2786 broad.mit.edu 37 1 235747114 235747114 + Missense_Mutation SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . GNG4 NM_001098721 exon3 c.A25G p.S9G TGGTGCTGTTATT 113 3 0.03 109 1 0.0091743119 18 17 0 0.00 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235872530 235872530 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_000081 exon44 c.G10004A p.R3335H AAAAGACGAGGAT 210 27 0.13 268 0 0 13 3 0.23 ANKRD30A 91074 broad.mit.edu;mdanderson.org 37 10 37442507 37442507 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . ANKRD30A NM_052997 exon13 c.G1547A p.C516Y GTCTCTGTGAGAC 567 18 0.03 791 1 0.0012642225 448 0 0 NFKB2 4791 broad.mit.edu;mdanderson.org 37 10 104159438 104159438 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . NFKB2 NM_002502 exon14 c.C1432T p.R478C GGACAGCGCCACC 32 4 0.13 43 0 0 48 175 67 0.38 TAF5 6877 broad.mit.edu 37 10 105145120 105145120 + Missense_Mutation SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . TAF5 NM_006951 exon8 c.A1702G p.R568G ACTGTTAGATTGT 70 3 0.04 92 0 0 47 29 0 0.00 SHOC2 8036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 112724174 112724174 + Missense_Mutation SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_007373 exon2 c.T58C p.S20P GTACCATCAGCCA 73 27 0.37 108 0 0 37 19 0.51 TACC2 10579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 123954584 123954584 + Missense_Mutation SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_206862 exon8 c.C5864A p.T1955N TTGAGACCCCGGA 63 14 0.22 58 0 0 23 13 0.57 HRAS 3265 ucsc.edu 37 11 534295 534295 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . HRAS NM_001130442 exon2 c.G28A p.G10S CGGCGCCCACCAC 53 3 0.06 54 0 0 1232 69 7 0.10 EFCAB4A 283229 mdanderson.org 37 11 830251 830251 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_173584 exon6 c.C607T p.R203C CGAAGGCGCGAGA 40 3 0.08 36 0 0 4 0 0.00 SPON1 10418 broad.mit.edu 37 11 14101781 14101782 + RNA INS - - T rs11432678 bycluster;by1000genomes TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . SPON1 . . . . TTTTTTCTTTTTT 6 2 0.33 5 0 0 65 0 0 ZDHHC5 25921 broad.mit.edu 37 11 57466827 57466827 + Frame_Shift_Del DEL A A - novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 ZDHHC5,NS,carcinoma,0,1 ZDHHC5 NM_015457 exon11 c.1919delA p.Q640fs GCAGCCAAAAAGC 115 7 0.06 118 0 0 49 1 409 0 0.00 CNTF 1270 broad.mit.edu 37 11 58391741 58391741 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . CNTF NM_000614 exon2 c.G349A p.A117T CAAGTCGCTGCCT 167 5 0.03 178 0 0 22 0 0 LTBP3 4054 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 65310634 65310634 + Silent SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001130144 exon18 c.C2538T p.G846G GTAGGAGCCATTG 126 8 0.06 106 0 0 33 2 0.06 APOA1 335 hgsc.bcm.edu 37 11 116708059 116708059 + Splice_Site SNP A A C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 APOA1,NS,carcinoma,-2,1 APOA1 NM_000039 exon3 c.43+2T>G . ACACCTACCCGTC 137 14 0.10 121 1 0.0082644628 -2 1 0 0 TIRAP 114609 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 126162546 126162546 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 TIRAP_ENST00000392678,NS,carcinoma,+1,3 TIRAP NM_148910 exon5 c.G242A p.R81H GTAGTCGCTGGAG 66 6 0.09 87 0 0 37 3 4 1 0.25 KLRC4 8302 broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 10562068 10562068 + Missense_Mutation SNP T T G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 KLRC4,NS,carcinoma,-1,1 KLRC4 NM_013431 exon1 c.A107C p.Q36P ATTTCCTGTTTGG 538 17 0.03 246 0 0 23 1 1 0 0.00 DDX11 1663 ucsc.edu 37 12 31254052 31254052 + Missense_Mutation SNP G G C rs201027785 by1000genomes TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . DDX11 NM_030653 exon20 c.G2040C p.E680D AAGAGAGCTGCCT 121 1 0.01 88 0 0 188 167 22 0.13 . 0 broad.mit.edu 37 12 59414689 59414689 + RNA DEL A A - novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . TTGAGTAACAAAT 6 2 0.33 11 0 0 0 0 CUX2 23316 mdanderson.org 37 12 111779749 111779749 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_015267 exon21 c.G3551T p.R1184L CACTGCGGAAGGC 124 5 0.04 164 0 0 6 0 0.00 SH2B3 10019 hgsc.bcm.edu 37 12 111886037 111886037 + Silent SNP G G T rs369151728 alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 SH2B3,rectum,carcinoma,0,1 SH2B3 NM_005475 exon8 c.G1659T p.S553S GGACTCGGACTAC 71 3 0.04 112 0 0 0 1 60 0 0.00 TMEM132D 121256 broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 130184360 130184360 + Silent SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . TMEM132D NM_133448 exon2 c.G963A p.T321T CCTCAACGTGAAG 197 18 0.09 234 1 0.0042735043 299 1 1 1.00 GPC6 10082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 94680124 94680124 + Missense_Mutation SNP G G C rs201329039 by1000genomes;alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_005708 exon4 c.G853C p.D285H GACCTCGACACAG 70 8 0.11 98 0 0 2 0 0.00 FARP1 10160 broad.mit.edu 37 13 99083499 99083499 + Missense_Mutation SNP A A C rs201729016 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . FARP1 NM_005766 exon18 c.A2108C p.H703P AACACCACCCGCC 93 40 0.43 104 27 0.2596153846 207 48 10 0.21 SETD3 84193 hgsc.bcm.edu;broad.mit.edu 37 14 99879294 99879294 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . SETD3 NM_199123 exon8 c.844delG p.G282fs CAGGCCGTTGGTG 154 15 0.10 150 0 0 56 90 1 0.01 AMN 81693 mdanderson.org 37 14 103389038 103389038 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_030943 exon1 c.G13T p.G5C GTCCTGGGCCGGG 23 3 0.13 37 0 0 1 0 0.00 . 0 broad.mit.edu;mdanderson.org 37 14 106829753 106829753 + RNA SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . CTCCAGCCCCTTC 185 16 0.09 216 0 0 529 11 0.02 MAPK6 5597 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 52353621 52353621 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . MAPK6 NM_002748 exon5 c.C991T p.P331S AGCCATCCTTTTC 176 47 0.27 230 1 0.0043478261 70 56 28 0.50 DENND4A 10260 mdanderson.org 37 15 66021978 66021978 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_005848 exon10 c.C1205A p.P402H TTTTCAGGGCCTA 35 3 0.09 62 0 0 4 0 0.00 SMAD6 4091 broad.mit.edu;mdanderson.org 37 15 67073787 67073787 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . SMAD6 NM_005585 exon4 c.G1405T p.A469S AGCTTCGCCAAGG 28 3 0.11 27 0 0 14 30 0 0.00 HCN4 10021 ucsc.edu 37 15 73617654 73617654 + Silent SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . HCN4 NM_005477 exon5 c.C1722T p.S574S GGGCTCGCTTAGC 58 4 0.07 87 0 0 150 1 0 0.00 STRA6 64220 broad.mit.edu 37 15 74476264 74476264 + Silent SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . STRA6 NM_001199042 exon14 c.T1350C p.H450H GGAGGGATGGGGA 89 14 0.16 97 13 0.1340206186 66 12 0 0.00 TARSL2 123283 mdanderson.org 37 15 102264363 102264363 + Silent SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_152334 exon1 c.C228A p.A76A CTCCTCGGCGAGG 11 2 0.18 13 0 0 4 0 0.00 RHBDF1 64285 mdanderson.org 37 16 110496 110496 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_022450 exon12 c.C1599A p.S533R TGGGGCGCTGGGA 14 2 0.14 14 0 0 64 0 0.00 TELO2 9894 mdanderson.org 37 16 1559886 1559886 + Silent SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_016111 exon21 c.G2463A p.L821L GGCCCTGCTGCTT 46 3 0.07 62 0 0 156 0 0.00 CLN3 1201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 28488916 28488916 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001042432 exon16 c.G1238A p.C413Y GAGATGCAGGTGG 79 5 0.06 113 0 0 260 42 0.16 RABEP2 79874 broad.mit.edu 37 16 28935747 28935747 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . RABEP2 NM_024816 exon2 c.C251T p.A84V AGCGAGGCCACCT 69 3 0.04 60 0 0 48 22 0 0.00 ZNF319 57567 mdanderson.org 37 16 58031252 58031252 + Silent SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_020807 exon2 c.G918A p.P306P CGTGCACGGGTGC 26 3 0.12 43 0 0 4 0 0.00 RLTPR 146206 mdanderson.org 37 16 67681206 67681206 + Missense_Mutation SNP T T A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001013838 exon10 c.T692A p.L231H AGAGCCTTGAGGT 86 4 0.05 138 0 0 5 0 0.00 CIRH1A 84916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 69177275 69177275 + Missense_Mutation SNP T T A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_032830 exon6 c.T721A p.S241T GTGCAGTCCATTG 95 10 0.11 135 0 0 164 39 0.24 BCAR1 9564 mdanderson.org 37 16 75276786 75276786 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001170714 exon3 c.C353T p.A118V GGCCCTGCTGGCT 25 3 0.12 26 0 0 27 0 0.00 ZC3H18 124245 mdanderson.org 37 16 88664702 88664702 + Nonsense_Mutation SNP G G T rs372349936 alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_144604 exon4 c.G805T p.G269X CCTCTCGGACCTC 44 3 0.07 69 0 0 70 0 0.00 PIK3R5 23533 mdanderson.org 37 17 8808189 8808189 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001142633 exon5 c.C317T p.A106V GTGCTGGCTGCCT 37 3 0.08 50 0 0 13 0 0.00 FBXW10 10517 broad.mit.edu;ucsc.edu;mdanderson.org 37 17 18681824 18681824 + Nonsense_Mutation SNP T T A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . FBXW10 NM_001267585 exon14 c.T2372A p.L791X GACAATTGGAAAC 313 28 0.09 426 0 0 82 0 0 SLC5A10 125206 mdanderson.org 37 17 18880197 18880197 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001270649 exon9 c.G877T p.D293Y GCCCGGGACCTGA 36 3 0.08 40 0 0 2 0 0.00 NOS2 4843 bcgsc.ca 37 17 26125770 26125770 + Silent SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . NOS2 NM_000625 exon2 c.A66G p.K22K GATGTCTTTTTCC 165 6 0.04 188 0 0 113 0 0 C17orf96 100170841 mdanderson.org 37 17 36830710 36830710 + Silent SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001130677 exon1 c.G39T p.P13P GGACGCCGGCACT 18 3 0.17 18 0 0 9 0 0.00 CDC27 996 hgsc.bcm.edu 37 17 45216115 45216115 + Missense_Mutation SNP T T A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 CDC27_ENST00000531206,NS,carcinoma,0,2 CDC27_ENST00000531206 NM_001114091 exon13 c.A1712T p.N571I GGCGAATTTTTAT 74 4 0.05 54 0 0 0 2 84 0 0.00 ZNF407 55628 mdanderson.org 37 18 72775889 72775889 + Missense_Mutation SNP G G T rs201021175 by1000genomes;alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_017757 exon8 c.G6212T p.R2071L AGGAGCGGGCACA 38 3 0.08 63 0 0 11 0 0.00 DENND1C 79958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6476886 6476886 + Silent SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_024898 exon10 c.C660A p.T220T GCTGGCGGTGAGC 50 6 0.12 60 0 0 11 0 0.00 MCOLN1 57192 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 7593728 7593728 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_020533 exon9 c.C1006T p.R336W ATGTGGCGGCAGC 225 10 0.04 181 0 0 111 10 0.09 ZNF559 84527 broad.mit.edu 37 19 9452580 9452580 + Silent SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . ZNF559 NM_001202406 exon6 c.A645G p.Q215Q TAATCAATGTGAA 98 3 0.03 140 0 0 77 67 1 0.01 HOOK2 29911 mdanderson.org 37 19 12878672 12878672 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001100176 exon13 c.C1261A p.L421M AGCGCAGCTCCTC 35 3 0.09 37 0 0 23 0 0.00 ZNF506 440515 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 19906184 19906184 + Missense_Mutation SNP T T G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001099269 exon4 c.A512C p.K171T AAAGATTTTTTTC 146 10 0.07 174 0 0 23 7 0.30 CAPNS1 826 broad.mit.edu 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . CAPNS1 NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 79 7 0.09 123 1 0.0081300813 19 2 0 0.00 . 171427 bcgsc.ca 37 19 41324703 41324703 + RNA SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . TGTCCTCGGGCGC 98 12 0.12 139 0 0 7 0 0.00 C19orf69 100170765 mdanderson.org 37 19 41949189 41949189 + Missense_Mutation SNP A A T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001130514 exon1 c.A115T p.T39S CTCAGGACTGCAG 37 3 0.08 45 0 0 0 0 CCDC8 83987 mdanderson.org 37 19 46915880 46915880 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 CCDC8,NS,carcinoma,+1,1 CCDC8 NM_032040 exon1 c.C188A p.T63N TGCGGGGTGCTCT 28 3 0.11 31 0 0 1 1 20 0 0.00 ZNF614 80110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52519423 52519423 + Silent SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_025040 exon5 c.T1428C p.C476C TGTATGACATCTC 76 8 0.11 101 0 0 32 10 0.31 NLRP12 91662 bcgsc.ca 37 19 54313068 54313068 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . NLRP12 NM_144687 exon3 c.C1845A p.Y615X CAAGCAGCTGAAG 117 6 0.05 144 1 0.0069444444 236 138 0 0.00 KIR2DL1 3802 mdanderson.org 37 19 55285080 55285080 + Silent SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_014218 exon3 c.C366A p.I122I CGTGATCATAGGT 31 3 0.10 31 0 0 0 0 KIR3DL1 3811 broad.mit.edu;mdanderson.org 37 19 55329817 55329817 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . KIR3DL1 NM_013289 exon3 c.C118T p.P40S GTGGTGCCTCGAG 38 3 0.08 51 0 0 174 1 0 0.00 TMEM86B 255043 mdanderson.org 37 19 55739752 55739752 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_173804 exon2 c.C105A p.Y35X GCAGAAGTACACG 35 3 0.09 56 0 0 8 0 0.00 NAT14 57106 bcgsc.ca 37 19 55997853 55997853 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . NAT14 NM_020378 exon3 c.G151A p.A51T GCGGCGGCCAGCA 17 4 0.24 20 0 0 11 37 0 0.00 TAF1B 9014 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 10016027 10016027 + Missense_Mutation SNP T T A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_005680 exon7 c.T587A p.V196D ATGGAGTTGAATA 117 9 0.08 123 0 0 80 13 0.16 GDF7 151449 mdanderson.org 37 2 20870822 20870822 + Silent SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_182828 exon2 c.G990T p.A330A GACAGCGCAGGGC 28 2 0.07 23 0 0 0 0 ALK 238 mdanderson.org 37 2 29754982 29754982 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_004304 exon4 c.G953A p.G318D AAGGAGCCTGGAA 69 4 0.06 79 0 0 0 0 USP34 9736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 61566736 61566736 + Missense_Mutation SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_014709 exon17 c.A2581G p.T861A ACAAAGTATTTCC 530 68 0.13 570 0 0 8 2 0.25 ETAA1 54465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 67630985 67630985 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_019002 exon5 c.C1171T p.P391S AGTGAACCTTTTG 212 28 0.13 328 0 0 16 3 0.19 CNNM4 26504 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 97475063 97475063 + Missense_Mutation SNP C C G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_020184 exon7 c.C2137G p.R713G ATCACTCGGCAGC 112 6 0.05 112 0 0 56 3 0.05 GPR45 11250 broad.mit.edu;mdanderson.org 37 2 105858882 105858882 + Silent SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 GPR45,medulla,primitive_neuroectodermal_tumour-medulloblastoma,+2,1 GPR45 NM_007227 exon1 c.C567T p.L189L GGAGCTCCCCGCT 41 3 0.07 61 0 0 73 1 0 0 ALPPL2 251 mdanderson.org 37 2 233274571 233274571 + Missense_Mutation SNP A A T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_031313 exon11 c.A1588T p.T530S ACGGCCACTGCTC 26 3 0.12 21 0 0 381 1 0.00 ANO7 50636 mdanderson.org 37 2 242149033 242149033 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001001891 exon13 c.G1504T p.V502L GGCTCTGTGGTGA 42 3 0.07 59 0 0 0 0 . 284764 bcgsc.ca 37 20 4004691 4004691 + RNA SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . ATGATGCGGCTCT 85 12 0.14 76 0 0 77 61 0.79 . 284764 bcgsc.ca 37 20 4004726 4004726 + RNA SNP T T C rs57328861 byfrequency TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . CGCGAATTGACCG 81 13 0.16 71 0 0 35 20 0.57 . 284764 bcgsc.ca 37 20 4004729 4004729 + RNA SNP A A G rs11553241 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . GAATTGACCGAGG 81 14 0.17 71 0 0 35 27 0.77 . 284764 bcgsc.ca 37 20 4004848 4004848 + RNA SNP T T C rs11553193 alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . CCCAGATGCCATG 135 17 0.13 97 0 0 30 23 0.77 . 284764 bcgsc.ca 37 20 4004916 4004916 + RNA SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . CCCTGGATTCTGC 114 11 0.10 102 0 0 27 24 0.89 . 284764 bcgsc.ca 37 20 4004925 4004925 + RNA SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . CTGCCCACATGGA 105 11 0.10 103 0 0 15 12 0.80 . 284764 bcgsc.ca 37 20 4004928 4004928 + RNA SNP T T C rs11553211 bycluster TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . CCCACATGGACCC 105 12 0.11 103 1 0.0097087379 18 16 0.89 . 284764 bcgsc.ca 37 20 4004986 4004986 + RNA SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . GAAGCTCATCAAG 67 6 0.09 71 0 0 16 13 0.81 ESF1 51575 broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 13753234 13753234 + Missense_Mutation SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . ESF1 NM_001276380 exon5 c.A1177G p.R393G TCATCCTCTCCTT 95 6 0.06 133 0 0 77 79 0 0.00 SLC19A1 6573 broad.mit.edu;ucsc.edu 37 21 46945796 46945796 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . SLC19A1 NM_001205206 exon5 c.G1228A p.V410I TCTTGACGATGGT 56 5 0.09 71 0 0 53 29 7 0.24 TPST2 8459 broad.mit.edu 37 22 26937214 26937214 + Missense_Mutation SNP A A C rs200758682 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 TPST2,NS,carcinoma,0,1 TPST2 NM_001008566 exon3 c.T383G p.V128G TCCGTCACCCCCG 55 13 0.24 68 13 0.1911764706 23 1 344 58 0.17 DNAJB7 150353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41257722 41257722 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_145174 exon1 c.C277A p.P93T CATCTGGCTTATG 159 16 0.10 163 0 0 15 1 0.07 DENND6B 414918 mdanderson.org 37 22 50756391 50756391 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001001794 exon4 c.C318A p.S106R CCAGGGGCTCCTC 33 3 0.09 26 0 0 3 0 0.00 SETD5 55209 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 9495475 9495475 + Missense_Mutation SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 SETD5_ENST00000402198,NS,carcinoma,+1,2 SETD5_ENST00000402198 NM_001080517 exon17 c.C2399A p.P800H CTGTACCCCAAGA 245 11 0.04 236 0 0 1 2 116 10 0.09 FLNB 2317 broad.mit.edu 37 3 58116558 58116558 + Missense_Mutation SNP G G A rs199590811 bycluster;by1000genomes TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . FLNB NM_001457 exon25 c.G4313A p.R1438H GAGCCCGTGTCCT 241 4 0.02 215 0 0 430 229 0 0.00 LSAMP 4045 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 115738431 115738431 + Missense_Mutation SNP C C T rs143751711 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 LSAMP,NS,carcinoma,0,1 LSAMP NM_002338 exon3 c.G445A p.V149M GAGTCACGTTGCT 76 6 0.08 118 0 0 62 1 8 2 0.25 P2RY13 53829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151045875 151045875 + Missense_Mutation SNP T T G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_176894 exon2 c.A969C p.K323N TGTGAATTTTTTA 99 21 0.21 165 0 0 1 0 0.00 NSUN7 79730 mdanderson.org 37 4 40778207 40778207 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_024677 exon7 c.G967A p.V323M GTATTTGTGTGTG 55 4 0.07 72 0 0 8 1 0.13 PAICS 10606 broad.mit.edu 37 4 57316793 57316793 + Silent SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . PAICS NM_001079525 exon7 c.G717T p.R239R TTATCGGGACCTC 56 3 0.05 81 0 0 21 761 0 0.00 ALB 213 hgsc.bcm.edu;bcgsc.ca 37 4 74283804 74283804 + Splice_Site SNP G G T rs77256214 bycluster TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_000477 exon12 c.1429-1G>T . TCTTTAGCTATCC 87 17 0.20 107 0 0 0 0 IRX4 50805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 1879733 1879733 + Silent SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 IRX4,colon,carcinoma,-1,1 IRX4 NM_016358 exon4 c.G621A p.T207T CGGCCACGTCATC 111 11 0.10 117 0 0 -1 1 61 7 0.11 IRX1 79192 broad.mit.edu 37 5 3600085 3600085 + Silent SNP C C T rs369355630 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . IRX1 NM_024337 exon2 c.C1023T p.P341P CCACCCCGGCGCG 89 7 0.08 120 1 0.0083333333 106 11 0 0.00 CDH9 1007 broad.mit.edu 37 5 26881347 26881347 + Silent SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . CDH9 NM_016279 exon12 c.C2268A p.L756L AGCTGTGAGAGAT 139 6 0.04 136 0 0 305 0 0 . 0 broad.mit.edu 37 5 33162312 33162312 + RNA SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . TGGCACCAGCGCC 47 3 0.06 55 0 0 787 733 0.93 . 0 broad.mit.edu 37 5 33162430 33162430 + RNA SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . GTGTGCAGGGAAG 55 4 0.07 57 0 0 492 475 0.97 . 0 broad.mit.edu 37 5 33162435 33162435 + RNA SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . CAGGGAAGTAACA 56 5 0.09 54 0 0 42 35 0.83 NNT 23530 broad.mit.edu 37 5 43613188 43613189 + Frame_Shift_Ins INS - - G rs149285174 by1000genomes TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 NNT,adrenal_gland,adrenal_cortical_adenoma,0,1 NNT NM_012343 exon3 c.330_331insG p.G110fs GGCAGGTGCCCAA 134 15 0.11 151 0 0 92 1 12 0 0.00 PCDHGA4 56111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140735836 140735836 + Missense_Mutation SNP C C G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_018917 exon1 c.C1069G p.Q357E TCAGTCCAGGAAT 73 12 0.16 114 0 0 2 0 0.00 GEMIN5 25929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 154280995 154280995 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_015465 exon21 c.G2918A p.C973Y TGAAAACACAGCT 157 19 0.12 222 0 0 45 9 0.20 GCNT2 2651 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 10586756 10586756 + Silent SNP C C G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_145655 exon1 c.C534G p.V178V CCTTGTCGCCTCT 149 9 0.06 146 0 0 40 5 0.13 HIST1H2BF 8343 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 26200084 26200084 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_003522 exon1 c.C298T p.R100C GCCGTACGCCTGC 86 5 0.06 75 0 0 0 0 HLA-H 3136 hgsc.bcm.edu 37 6 29855800 29855800 + RNA SNP T T A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 ENSG00000196306,right_lower_lobe,carcinoma,0,3 ENSG00000196306 . . . . TTCATCTCCGTCG 107 10 0.09 82 2 0.0243902439 0 3 176 153 0.87 HLA-J 3137 hgsc.bcm.edu 37 6 29977011 29977011 + RNA SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . GAGCCCATGGGGG 87 18 0.21 108 0 0 1 0 0.00 MUC21 394263 mdanderson.org 37 6 30955233 30955233 + Silent SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001010909 exon2 c.A1281G p.T427T CAGCACAACCTCC 98 5 0.05 63 0 0 13 0 0.00 FOXP4 116113 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 41555161 41555161 + Silent SNP G G C rs375722090 alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . FOXP4 NM_001012426 exon7 c.G783C p.S261S TACCTCGTTTGCC 286 10 0.03 167 1 0.005988024 83 110 11 0.10 rescued with RNA-seq DNPH1 10591 mdanderson.org 37 6 43194088 43194088 + Missense_Mutation SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_199184 exon2 c.T242C p.L81P CACTCCAGGTCCT 39 3 0.08 40 0 0 183 0 0.00 UBE3D 90025 broad.mit.edu 37 6 83732269 83732269 + Missense_Mutation SNP A A T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_198920 exon7 c.T749A p.V250D CTCTGGACAAACC 223 8 0.04 295 0 0 12 0 0.00 GPR6 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 110301311 110301311 + Silent SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 GPR6,caecum,carcinoma,+1,1 GPR6 NM_005284 exon1 c.C996T p.R332R CTTCCGCAACCAG 84 8 0.10 123 1 0.0081300813 46 1 1 0 0.00 SOGA3 387104 broad.mit.edu;mdanderson.org 37 6 127837119 127837119 + Missense_Mutation SNP G G C rs200377274 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001012279 exon2 c.C641G p.A214G GGGGAGGCCCCCT 32 10 0.31 22 3 0.1363636364 0 0 LAMA2 3908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 129204396 129204396 + Silent SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_000426 exon1 c.G6A p.P2P GATGCCGGGAGCC 59 8 0.14 40 0 0 0 0 LAMA2 3908 mdanderson.org 37 6 129691055 129691055 + Missense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001079823 exon34 c.C4879T p.R1627W CCTCAGCGGGCCC 34 3 0.09 70 0 0 9 0 0.00 HOXA3 3200 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 27150188 27150188 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_030661 exon2 c.C72A p.F24L ATAAGCGAACCCG 161 17 0.11 190 0 0 1 0 0.00 GLI3 2737 broad.mit.edu;mdanderson.org 37 7 42005961 42005961 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . GLI3 NM_000168 exon15 c.C2710T p.R904C AGCGGCGCGAGGC 31 3 0.10 36 0 0 312 1 0 0.00 EGFR 1956 mdanderson.org 37 7 55223545 55223545 + Silent SNP C C T rs182002674 bycluster;by1000genomes TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_201283 exon8 c.C912T p.H304H AGATCACGGCTCG 80 4 0.05 75 0 0 0 2 0 0.00 AUTS2 26053 broad.mit.edu;mdanderson.org 37 7 70249953 70249953 + Silent SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . AUTS2 NM_015570 exon16 c.T2172C p.P724P GACCCCTTTTGGG 128 5 0.04 121 0 0 173 46 0 0.00 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 82455963 82455963 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_014510 exon18 c.C14357T p.T4786I TCCAGTGTTTTCT 83 9 0.11 120 0 0 0 0 AKAP9 10142 broad.mit.edu 37 7 91715587 91715587 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . AKAP9 NM_005751 exon37 c.G9070T p.G3024C TGGCGAGGTGAAC 212 4 0.02 263 0 0 788 19 0 0.00 DUS4L 11062 broad.mit.edu 37 7 107207563 107207563 + Silent SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . DUS4L NM_001270419 exon3 c.A48G p.K16K AAAAAAAGATCCC 136 4 0.03 136 0 0 27 26 0 0.00 CTTNBP2 83992 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 117368303 117368303 + Missense_Mutation SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_033427 exon17 c.T3895C p.S1299P AGGGGGAGGGCGC 140 7 0.05 155 0 0 0 0 C7orf49 78996 broad.mit.edu;mdanderson.org 37 7 134851458 134851458 + Silent SNP T T G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . C7orf49 NM_024033 exon4 c.A379C p.R127R CCGGCCTCTGGGA 42 4 0.10 53 0 0 24 97 15 0.15 SSPO 23145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 149483197 149483197 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_198455 exon23 c.G3265T p.G1089W GTGAATGGGGTGA 99 14 0.14 103 0 0 0 0 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 3889549 3889549 + Missense_Mutation SNP A A G novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_033225 exon4 c.T488C p.I163T TCTCCTATGTTGA 104 6 0.06 171 0 0 0 0 GPR124 25960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 37689047 37689047 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_032777 exon8 c.G1039A p.E347K GTGCTGGAGACCT 53 10 0.19 91 0 0 21 2 0.10 CYP7A1 1581 mdanderson.org 37 8 59409620 59409620 + Missense_Mutation SNP G G T rs201114135 alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 CYP7A1,colon,carcinoma,0,1 CYP7A1 NM_000780 exon3 c.C451A p.R151S TGATACGTTGGAG 12 2 0.17 17 0 0 0 1 0 0 MLLT3 4300 hgsc.bcm.edu;broad.mit.edu 37 9 20414311 20414319 + In_Frame_Del DEL CTGCTGCTG CTGCTGCTG - rs373338988 alternate_allele TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 CTGCTGCTG CTGCTGCTG Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 MLLT3,caecum,carcinoma,0,1 MLLT3 NM_004529 exon5 c.526_534del p.176_178del CTGCTACTGCTGC 63 13 0.21 85 0 0 125 0 0 KIF24 347240 broad.mit.edu 37 9 34310903 34310903 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . KIF24 NM_194313 exon2 c.C442A p.H148N TTGTATGGTACTG 223 4 0.02 279 0 0 64 5 0 0.00 ANKS6 203286 mdanderson.org 37 9 101498829 101498829 + Missense_Mutation SNP C C A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_173551 exon15 c.G2588T p.R863M GGGGCCCTGGTGT 47 3 0.06 73 0 0 20 0 0.00 . 0 bcgsc.ca 37 9 120845344 120845344 + RNA SNP A A T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . GGTCTCAGTTCTT 65 9 0.14 75 0 0 48 44 0.92 . 0 bcgsc.ca 37 9 120845358 120845358 + RNA SNP G G C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . AAGTTTGCCTTTG 60 8 0.13 83 0 0 70 61 0.87 ZBTB43 23099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 129596183 129596183 + Silent SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001135776 exon2 c.G1395A p.E465E AACTGAGGCTAAC 143 58 0.41 155 0 0 13 7 0.54 ARSF 416 broad.mit.edu 37 X 3019220 3019220 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . ARSF NM_004042 exon8 c.C1060T p.R354X GCTAGGCGAGGGC 488 5 0.01 297 0 0 97 0 0 SCML2 10389 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 18276363 18276374 + In_Frame_Del DEL ACAGACTTGAGA ACAGACTTGAGA - novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 ACAGACTTGAGA ACAGACTTGAGA Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . SCML2 NM_006089 exon10 c.1070_1075del p.357_359del ATAGACACAGACT 243 22 0.09 169 0 0 81 36 0 0.00 MAGEB4 4115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 30261215 30261215 + Silent SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_002367 exon1 c.T963C p.V321V CAGAGTTGCAGCC 107 14 0.13 84 0 0 0 0 NR0B1 190 broad.mit.edu;mdanderson.org 37 X 30326687 30326687 + Missense_Mutation SNP G G C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . NR0B1 NM_000475 exon1 c.C794G p.T265R CGCAGCGTCTTCA 44 3 0.07 24 0 0 61 4 0 0.00 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu 37 X 53574783 53574785 + In_Frame_Del DEL GTG GTG - novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 GTG GTG Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . HUWE1 NM_031407 exon68 c.10486_10488del p.3496_3496del GCGGCAGTGGTGG 162 11 0.07 95 0 0 724 502 0 0.00 PHKA1 5255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 71829496 71829496 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_002637 exon23 c.C2584A p.P862T CTCGAGGTTCTGG 159 42 0.26 121 0 0 111 51 0.46 ATRX 546 broad.mit.edu 37 X 76855029 76855029 + Missense_Mutation SNP T T C novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . ATRX NM_000489 exon25 c.A5807G p.K1936R TTCCCCTTTTTCC 385 5 0.01 302 0 0 833 22 0 0.00 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 109695094 109695094 + Missense_Mutation SNP G G A novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_020769 exon3 c.G1249A p.G417R CTAATGGGAGCCC 76 9 0.12 44 0 0 0 0 XIAP 331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 123040895 123040895 + Missense_Mutation SNP G G T novel TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . NM_001204401 exon7 c.G1358T p.C453F AAATCTGTATGGA 202 35 0.17 155 0 0 25 6 0.24 MAGEA10-MAGEA5 0 broad.mit.edu 37 X 151296336 151296337 + RNA INS - - A rs5904333 bycluster;byfrequency TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . ATTCCAGAAAAAA 13 6 0.46 11 0 0 0 0 TXNRD1 7296 hgsc.bcm.edu;broad.mit.edu 37 12 104709560 104709560 + Missense_Mutation SNP G G A rs370602169 TCGA-2G-AAKH-01A-11D-A42Y-10 TCGA-2G-AAKH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4181974f-50f6-46f2-80af-81cef983c7df 539c8e99-0cf7-4e55-a88a-d21072e30885 . . . . . . GGTCTCGGAGGAA 95 4 0.04 140 0 0 242 18 0.07