Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SLC2A7 155184 broad.mit.edu;ucsc.edu 37 1 9074839 9074839 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . SLC2A7 NM_207420 exon7 c.C804A p.H268Q AGACAGGTGGCCC 56 16 0.29 50 1 0.02 56 0 0 PTCHD2 57540 broad.mit.edu;ucsc.edu 37 1 11580781 11580781 + Silent SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . PTCHD2 NM_020780 exon10 c.C2238T p.F746F GGTGTTCGCCAGC 175 20 0.11 159 1 0.0062893082 193 0 0 PRDM2 7799 broad.mit.edu 37 1 14105124 14105124 + Missense_Mutation SNP A A T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 PRDM2,caecum,carcinoma,0,2 PRDM2 NM_015866 exon8 c.A834T p.E278D GGATGAAGAAGAA 142 5 0.04 118 0 0 147 2 1 0 0.00 CROCCP2 0 broad.mit.edu 37 1 16946455 16946456 + RNA INS - - GCTCACGCTGCA novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TCCTCCTGCTCAC 83 9 0.11 83 0 0 0 0 FAM110D 79927 broad.mit.edu 37 1 26487994 26487994 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_024869 exon2 c.G212A p.R71H CGGTCCGCCGGGG 124 7 0.06 106 1 0.0094339623 0 0 RPL5 6125 bcgsc.ca 37 1 93299200 93299201 + Frame_Shift_Del DEL AG AG - novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AG AG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . RPL5 NM_000969 exon3 c.172_173del p.58_58del ACAAACAGAGATA 62 0 0.00 48 0 0 38 189 0 0.00 DCLRE1B 64858 bcgsc.ca 37 1 114448290 114448290 + Missense_Mutation SNP T T A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . DCLRE1B NM_022836 exon1 c.T82A p.F28I CTCTTCTTCTTGT 119 0 0.00 109 0 0 36 0 0 FAM5B 57795 bcgsc.ca 37 1 177249621 177249621 + Silent SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . FAM5B NM_021165 exon8 c.C1309T p.L437L ACTTTCCTGGAAC 432 0 0.00 287 0 0 191 0 0 AXDND1 126859 broad.mit.edu 37 1 179504044 179504046 + In_Frame_Del DEL AAG AAG - rs10603018 alternate_allele TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AAG AAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . AXDND1 NM_144696 exon25 c.2978_2980del p.993_994del AACAACAAGAAGA 333 7 0.02 238 0 0 142 10 0 0.00 FAM5C 339479 hgsc.bcm.edu;broad.mit.edu 37 1 190068175 190068175 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 FAM5C,NS,carcinoma,+1,3 FAM5C NM_199051 exon8 c.C1274G p.S425W GTGCACGAGTGCG 87 5 0.06 101 0 0 1 3 0 0 EPRS 2058 bcgsc.ca 37 1 220151968 220151968 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 EPRS,NS,carcinoma,0,1 EPRS NM_004446 exon28 c.C4003A p.L1335I CACTGAGTAATCG 126 0 0.00 105 0 0 140 1 26 0 0.00 FAM21B 55747 bcgsc.ca 37 10 47948782 47948782 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . FAM21B NM_018232 exon29 c.C3691T p.P1231S GCCGCACCTGAAC 672 1 0.00 659 0 0 31 30 0 0.00 FSHB 2488 broad.mit.edu 37 11 30255147 30255147 + Missense_Mutation SNP A A C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . FSHB NM_000510 exon3 c.A190C p.K64Q AGGCCCAAAATCC 111 3 0.03 112 0 0 28 0 0 ALX4 60529 broad.mit.edu 37 11 44331327 44331327 + Missense_Mutation SNP T T G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ALX4 NM_021926 exon1 c.A286C p.T96P GCGGGGTCGACGG 42 9 0.21 40 13 0.325 58 0 0 MTA2 9219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 62365527 62365527 + Silent SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_004739 exon6 c.C459T p.Y153Y AGCTTGGTATTTG 112 23 0.21 128 0 0 0 0 . 0 bcgsc.ca 37 11 62815368 62815368 + RNA SNP G G A rs7125680 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . GGTGCAGCATGCC 28 1 0.04 29 0 0 0 0 MAP4K2 5871 broad.mit.edu 37 11 64566925 64566925 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . MAP4K2 NM_004579 exon14 c.C1021G p.R341G TCCTGCGTGGGGC 87 5 0.06 109 0 0 83 0 0 TAS2R8 50836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 10959286 10959286 + Missense_Mutation SNP C C G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_023918 exon1 c.G294C p.W98C GGTAATCCACATA 175 22 0.13 96 0 0 0 0 ABCC9 10060 broad.mit.edu;ucsc.edu 37 12 22061069 22061069 + Missense_Mutation SNP A A G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ABCC9 NM_005691 exon9 c.T1397C p.L466P GGCGCAAGGAGCA 506 57 0.11 303 1 0.00330033 411 0 0 C12orf40 283461 broad.mit.edu 37 12 40040216 40040216 + Silent SNP G G T rs373044195 alternate_allele TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 C12orf40,NS,carcinoma,0,1 C12orf40 NM_001031748 exon4 c.G288T p.S96S AATGTCGCCTCAC 197 4 0.02 143 1 0.006993007 118 1 0 0 STAT6 6778 broad.mit.edu 37 12 57493815 57493815 + Missense_Mutation SNP A A G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . STAT6 NM_001178079 exon14 c.T1571C p.L524P TTGGTGAGGTCCA 121 4 0.03 94 0 0 69 11 0 0.00 TSC22D1 8848 broad.mit.edu 37 13 45148516 45148516 + Silent SNP T T G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 TSC22D1,NS,carcinoma,-2,1 TSC22D1 NM_183422 exon1 c.A1695C p.V565V CAGAGGTACTGGC 68 22 0.32 87 25 0.2873563218 88 1 0 0 TPTE2P3 220115 hgsc.bcm.edu 37 13 53095190 53095190 + RNA SNP G G C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . GTTTTTGCAGCAG 179 39 0.22 216 0 0 0 0 L2HGDH 79944 hgsc.bcm.edu 37 14 50713845 50713847 + In_Frame_Del DEL AGG AGG - novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AGG AGG Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_024884 exon10 c.1322_1324del p.441_442del AGCAGCAGGAGAA 337 53 0.16 228 0 0 0 0 SERPINA10 51156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 94756510 94756510 + Silent SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001100607 exon2 c.C421T p.L141L AAGGCAGGAGCCC 141 16 0.11 135 0 0 0 0 AHNAK2 113146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105416870 105416870 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 AHNAK2_ENST00000333244,NS,carcinoma,+2,1 AHNAK2_ENST00000333244 NM_138420 exon7 c.C4918A p.L1640M CCTCCAGCTGCGC 202 40 0.20 172 0 0 2 1 0 0 DISP2 85455 bcgsc.ca 37 15 40656718 40656718 + Silent SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . DISP2 NM_033510 exon4 c.G576A p.R192R GGCCCGGCTGCCC 83 0 0.00 54 0 0 86 0 0 BAHD1 22893 hgsc.bcm.edu;broad.mit.edu 37 15 40750667 40750668 + Frame_Shift_Del DEL AC AC - novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AC AC Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_014952 exon2 c.3_4del p.1_2del TCCATGACACACA 90 10 0.11 64 0 0 0 0 EIF3J 8669 broad.mit.edu 37 15 44829415 44829415 + Missense_Mutation SNP C C G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . EIF3J NM_003758 exon1 c.C23G p.A8G CGGCGGCGGGGGA 253 8 0.03 207 2 0.0096618357 29 1 0 0.00 MYEF2 50804 bcgsc.ca 37 15 48450208 48450208 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . MYEF2 NM_016132 exon9 c.A967G p.K323E GTGTTTTACCATC 253 0 0.00 176 0 0 67 0 0 . 0 broad.mit.edu 37 15 84958415 84958426 + RNA DEL CGAGGACATTGG CGAGGACATTGG - novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 CGAGGACATTGG CGAGGACATTGG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . GCACCACGAGGAC 8 2 0.25 7 2 0.2857142857 0 0 ZNF592 9640 bcgsc.ca 37 15 85326876 85326876 + Missense_Mutation SNP A A C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZNF592 NM_014630 exon4 c.A970C p.K324Q AGCCCCAAAATGC 133 0 0.00 146 0 0 95 0 0 ZNF592 9640 bcgsc.ca 37 15 85327404 85327404 + Missense_Mutation SNP C C A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZNF592 NM_014630 exon4 c.C1498A p.P500T CTCCTGCCCAAAG 73 0 0.00 68 0 0 95 1 0 0.00 ADAMTS17 170691 broad.mit.edu 37 15 100672218 100672218 + Missense_Mutation SNP T T G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ADAMTS17 NM_139057 exon12 c.A1715C p.N572T GGGGGGTTGTCAC 83 21 0.25 55 11 0.2 127 0 0 PRSS27 83886 broad.mit.edu 37 16 2762757 2762757 + Missense_Mutation SNP A A C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . PRSS27 NM_031948 exon6 c.T737G p.V246G CTGATCACCCCCG 66 17 0.26 52 13 0.25 20 6 1 0.17 NMRAL1 57407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 4519318 4519318 + Silent SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_020677 exon3 c.C189T p.V63V CATGATGACCTGG 51 12 0.24 55 0 0 71 25 0.35 SLC12A3 6559 hgsc.bcm.edu;broad.mit.edu 37 16 56913028 56913028 + Silent SNP A A T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001126108 exon10 c.A1224T p.T408T TGACACAGTGACC 93 11 0.12 74 0 0 0 0 HSF4 3299 bcgsc.ca 37 16 67203680 67203680 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . HSF4 NM_001040667 exon15 c.T1471C p.S491P AGTCCCTCCCCCT 57 0 0.00 41 0 0 33 14 0 0.00 GEMIN4 50628 broad.mit.edu 37 17 648193 648193 + Missense_Mutation SNP G G T rs367581258 bycluster;alternate_allele TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . GEMIN4 NM_015721 exon2 c.C3090A p.H1030Q CTGCTCGTGTGCC 65 3 0.05 72 1 0.0138888889 116 83 0 0.00 MYH8 4626 bcgsc.ca 37 17 10309436 10309436 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 MYH8,NS,carcinoma,+1,1 MYH8 NM_002472 exon21 c.C2354T p.A785V ATTTGGGCTAATT 114 0 0.00 89 0 0 346 1 0 0 RHOT1 0 broad.mit.edu 37 17 30469600 30469601 + Frame_Shift_Ins INS - - G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . RHOT1 . . . . GCGCGGCGGGCCC 6 2 0.33 9 0 0 69 0 0 GPATCH8 23131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 42513867 42513867 + Silent SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001002909 exon4 c.C240A p.G80G ACCCATGCCCATG 54 10 0.19 65 0 0 0 0 USP36 57602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76810500 76810500 + Silent SNP G G A rs139221124 bycluster;byfrequency;by1000genomes TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_025090 exon11 c.C1158T p.Y386Y CTTCACGTAGCAG 25 5 0.20 39 0 0 0.003 0 0 ZFR2 23217 broad.mit.edu 37 19 3831669 3831669 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZFR2 NM_015174 exon4 c.C587A p.T196N TAGGCGGTGCAGG 40 3 0.08 23 0 0 63 0 0 TICAM1 148022 broad.mit.edu 37 19 4817310 4817310 + Silent SNP A A G novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . TICAM1 NM_182919 exon2 c.T1080C p.P360P AGGAGGAGGGGAT 130 4 0.03 88 3 0.0340909091 69 0 0 LYPD4 147719 broad.mit.edu 37 19 42342975 42342975 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . LYPD4 NM_173506 exon3 c.C191A p.T64K ACTAGCGTCTCCT 98 5 0.05 50 0 0 30 0 0 SYMPK 8189 bcgsc.ca 37 19 46345588 46345588 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . SYMPK NM_004819 exon9 c.C1007G p.A336G TTGCGGGCGATCT 118 0 0.00 90 0 0 104 1 0 0.00 RNU6-66 100873770 hgsc.bcm.edu 37 19 46753078 46753078 + RNA SNP C C T rs146564627 by1000genomes TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . CCGGATCATGATC 5 4 0.80 7 0 0 0.001 0 0 KIDINS220 57498 bcgsc.ca 37 2 8919088 8919088 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . KIDINS220 NM_020738 exon19 c.A2552G p.N851S CTTGCATTGCTTA 115 0 0.00 105 0 0 136 1 0 0.00 XDH 7498 hgsc.bcm.edu;broad.mit.edu 37 2 31602747 31602747 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_000379 exon13 c.C1228T p.P410S TGTAGGGGATCTC 110 23 0.21 98 0 0 0 0 MRPS5 64969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 95753180 95753180 + Silent SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_031902 exon12 c.A1215G p.K405K GTCCAGTTTGACG 130 13 0.10 113 0 0 601 143 0.24 KANSL3 55683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 97276835 97276835 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001115016 exon10 c.G1127A p.G376E GGAAACCCAAGGC 114 20 0.18 89 0 0 0 0 UGGT1 56886 broad.mit.edu 37 2 128865547 128865547 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . UGGT1 NM_020120 exon4 c.G313T p.A105S TTGGAGGCTGCAT 137 5 0.04 98 0 0 126 0 0 . 55041 broad.mit.edu 37 2 132110862 132110862 + Silent SNP G G C rs370398581 TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . CGCTCCGGCTCTC 50 5 0.10 39 1 0.0256410256 0 0 NEB 4703 bcgsc.ca 37 2 152484132 152484132 + Missense_Mutation SNP C C T rs377180119 TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . NEB NM_001271208 exon69 c.G10048A p.D3350N CCACATCGCTGAC 246 0 0.00 188 0 0 1697 0 0 TNS1 7145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 218751314 218751314 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_022648 exon11 c.C547T p.P183S ACAAGGGCTTGTT 155 35 0.23 98 0 0 0 0 ALPPL2 251 hgsc.bcm.edu 37 2 233271791 233271791 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_031313 exon2 c.G92C p.W31S ACTTCTGGAACCG 93 11 0.12 80 0 0 2 0 0.00 GDF5 8200 hgsc.bcm.edu;broad.mit.edu 37 20 34025393 34025394 + Frame_Shift_Ins INS - - T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_000557 exon1 c.316_317insA p.P106fs GCTTGGGTTCAGG 93 22 0.24 57 0 0 0 0 ZC3H7B 23264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 41742035 41742035 + Silent SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_017590 exon14 c.C1488T p.Y496Y TAAGTACGGGGAT 56 9 0.16 51 0 0 0 0 SELO 0 bcgsc.ca 37 22 50655406 50655406 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . GAGCCCGGCTGGA 31 0 0.00 24 0 0 103 1 0.01 IQCF6 440956 bcgsc.ca 37 3 51812955 51812955 + Missense_Mutation SNP C C T rs370141442 TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . IQCF6 NM_001143833 exon2 c.G8A p.R3H GTCCGGCGCACCA 121 0 0.00 88 0 0 2 0 0 PRICKLE2 166336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 64142837 64142837 + Splice_Site SNP C C A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_198859 exon6 c.600+1G>T . CTCTAACCTCATC 255 53 0.21 220 0 0 0 0 ZPLD1 131368 broad.mit.edu 37 3 102181181 102181181 + Silent SNP C C A rs148150314 alternate_allele TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZPLD1 NM_175056 exon6 c.C687A p.T229T GAAAACCAAAGTA 132 18 0.14 118 7 0.0593220339 82 0 0 CASR 846 bcgsc.ca 37 3 122002841 122002841 + Silent SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . CASR NM_001178065 exon7 c.C2070T p.R690R CCTGCGCCAGCCG 98 0 0.00 85 0 0 190 0 0 SAMD7 344658 broad.mit.edu 37 3 169644457 169644457 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . SAMD7 NM_182610 exon6 c.C407T p.P136L CTGCCCCCGCTGC 251 5 0.02 183 0 0 69 0 0 MUC4 4585 broad.mit.edu 37 3 195513346 195513346 + Missense_Mutation SNP A A G rs79482340 bycluster;byfrequency TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . MUC4 NM_018406 exon2 c.T5105C p.V1702A GAGGAAACGTCGG 418 12 0.03 386 2 0.0051813472 1505 0 0 USP46 64854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 53492336 53492336 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_022832 exon4 c.A410G p.Q137R TCCTCCTGAAGGA 168 27 0.16 144 0 0 0 0 BMP2K 55589 hgsc.bcm.edu 37 4 79792085 79792085 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 BMP2K_ENST00000502871,NS,carcinoma,0,7 BMP2K_ENST00000502871 NM_017593 exon11 c.G1380C p.Q460H TCACCAGCAGCAG 50 3 0.06 44 0 0 0 7 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 126237899 126237899 + Silent SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 FAT4_ENST00000394329,larynx,carcinoma,+2,2 FAT4_ENST00000394329 NM_024582 exon1 c.T333C p.L111L GGTCCTTTCCAGC 51 13 0.25 60 0 0 2 2 0 0 SMARCA5 8467 hgsc.bcm.edu;broad.mit.edu 37 4 144445568 144445571 + Frame_Shift_Del DEL AGAA AGAA - novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AGAA AGAA Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_003601 exon4 c.467_470del p.156_157del ATTAACAGAAAGC 380 73 0.19 371 0 0 1 0 0.00 CDH6 1004 broad.mit.edu 37 5 31323132 31323132 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 CDH6,neck,malignant_melanoma,+1,1 CDH6 NM_004932 exon12 c.T2090C p.L697P AAGCCCTTTTCCT 163 3 0.02 164 0 0 175 1 0 0 ZSWIM6 57688 broad.mit.edu 37 5 60628153 60628154 + In_Frame_Ins INS - - GGC rs374788320 alternate_allele TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZSWIM6 NM_020928 exon1 c.54_55insGGC p.P18delinsPG CCGGCCGGGCGGC 6 2 0.33 4 0 0 51 0 0 HSD17B4 3295 bcgsc.ca 37 5 118811418 118811418 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . HSD17B4 NM_001199291 exon6 c.G373T p.A125S AACAATGCTGGGT 118 0 0.00 84 0 0 63 0 0 EBF1 1879 bcgsc.ca 37 5 158158144 158158144 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . EBF1 NM_024007 exon11 c.A1058G p.D353G CCATAATCGATGG 61 0 0.00 80 0 0 110 0 0 SLC22A23 63027 broad.mit.edu 37 6 3273475 3273476 + Frame_Shift_Ins INS - - T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . SLC22A23 NM_015482 exon10 c.1875_1876insA p.N625fs AGGCAGGTTCTGG 58 9 0.16 48 0 0 89 0 0 BTN2A3P 0 broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 BTN2A3,NS,carcinoma,0,9 . . . . . ATGGAACCAGCTG 102 6 0.06 96 1 0.0104166667 9 0 0 ABT1 29777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 26598339 26598339 + Splice_Site SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_013375 exon2 c.438+1G>T . CTCAAGGTGAGAA 119 18 0.15 105 0 0 1 1 1.00 BEND6 221336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 56857323 56857323 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 BEND6,NS,carcinoma,0,1 BEND6 NM_152731 exon3 c.C268T p.R90X AACAGCCGACTTC 138 25 0.18 88 0 0 0 1 1 0 0.00 REV3L 5980 hgsc.bcm.edu;broad.mit.edu 37 6 111804004 111804004 + Missense_Mutation SNP C C A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_002912 exon1 c.G88T p.A30S CAGGGGCCTGGGT 73 18 0.25 75 0 0 0 0 PRPS1L1 221823 broad.mit.edu 37 7 18067198 18067198 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . PRPS1L1 NM_175886 exon1 c.C208A p.L70I TCAAAAGCTCCAT 174 4 0.02 136 0 0 90 0 0 GPNMB 10457 bcgsc.ca 37 7 23286485 23286486 + Frame_Shift_Del DEL TC TC - novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 TC TC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . GPNMB NM_002510 exon1 c.9_10del p.3_4del GGAATGTCTCTAC 98 0 0.00 84 0 0 88 0 0 AVL9 23080 broad.mit.edu 37 7 32598232 32598232 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . AVL9 NM_015060 exon9 c.T671C p.L224P TATCCCTTTTTCC 135 4 0.03 90 1 0.0111111111 66 0 0 NYAP1 222950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100086782 100086782 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_173564 exon4 c.C1438T p.P480S GGTCCACCCCTGG 75 19 0.25 54 0 0 0 0 MUC17 140453 bcgsc.ca 37 7 100680100 100680100 + Silent SNP G G A rs142682652 byfrequency TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . MUC17 NM_001040105 exon3 c.G5403A p.S1801S AACCTCGACTCTT 110 4 0.04 104 1 0.0096153846 804 0 0 MUC17 140453 bcgsc.ca 37 7 100680117 100680117 + Missense_Mutation SNP T T C rs147353603 bycluster;byfrequency TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . MUC17 NM_001040105 exon3 c.T5420C p.M1807T AAGGAATGACTCC 111 6 0.05 99 1 0.0101010101 804 0 0 ZFHX4 79776 bcgsc.ca 37 8 77775665 77775665 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZFHX4 NM_024721 exon11 c.G9715A p.D3239N CATGTCGATCCTA 119 0 0.00 93 0 0 878 0 0 SCRIB 23513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144893427 144893427 + Missense_Mutation SNP C C A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 SCRIB,larynx,carcinoma,0,1 SCRIB NM_015356 exon10 c.G995T p.G332V CAGCCCCCGATCT 81 24 0.30 71 0 0 0 1 2 0 0.00 SMARCA2 6595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 2115838 2115838 + Missense_Mutation SNP A A C rs281875240 alternate_allele TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_139045 exon25 c.A3473C p.D1158A CCCAAGACCGAGC 229 43 0.19 199 0 0 0 0 ALDH1B1 219 broad.mit.edu 37 9 38396054 38396054 + Silent SNP G G A novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ALDH1B1 NM_000692 exon2 c.G309A p.R103R GGGCCGGCTGCTG 44 4 0.09 60 0 0 50 0 0 SPATA31D4 0 broad.mit.edu 37 9 84545116 84545117 + RNA INS - - TT novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . CGCCTTCTTTTTT 103 4 0.04 80 0 0 0 0 ATRX 546 broad.mit.edu 37 X 76855029 76855029 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . ATRX NM_000489 exon25 c.A5807G p.K1936R TTCCCCTTTTTCC 336 7 0.02 205 0 0 833 0 0 MAGEA10-MAGEA5 0 broad.mit.edu 37 X 151290002 151290003 + RNA INS - - T rs200557971 by1000genomes TCGA-2G-AAKG-05A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9c47b6d-b71f-41d0-a5cc-075325b322a6 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . GATATTGTTTTTT 5 2 0.40 4 0 0 0 0