Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PRDM2 7799 broad.mit.edu 37 1 14105106 14105106 + Silent SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . PRDM2 NM_015866 exon8 c.G816A p.E272E GGAGGAGGAAGAG 193 5 0.03 148 0 0 147 7 0 0.00 C1orf94 84970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 34643423 34643423 + Silent SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001134734 exon1 c.G33A p.L11L AGCCCTGGGTGGA 99 20 0.20 75 0 0 0 0 ELAVL4 1996 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 50642764 50642765 + Frame_Shift_Del DEL AG AG - novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 ELAVL4_ENST00000357083,NS,carcinoma,0,2 ELAVL4 NM_001144775 exon3 c.304_305del p.102_102del CAGGACAGAGTTT 73 13 0.18 72 0 0 124 0 0 MIR137HG 400765 hgsc.bcm.edu 37 1 98511786 98511786 + RNA SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . . . . . TGCCGCCGCCGCC 88 17 0.19 98 0 0 0 0 PRPF38B 55119 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 109241987 109241989 + In_Frame_Del DEL GCA GCA - novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 GCA GCA Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . PRPF38B NM_018061 exon6 c.985_987del p.329_329del GCAGGCGCAGCAG 184 43 0.23 156 0 0 55 212 0 0.00 FLG2 388698 bcgsc.ca 37 1 152327658 152327658 + Silent SNP T T A rs12724005 byhapmap TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . FLG2 NM_001014342 exon3 c.A2604T p.T868T GCCAGATGTCTGT 47 9 0.19 86 1 0.011627907 431 0 0 PLEKHA6 22874 mdanderson.org 37 1 204210552 204210552 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_014935 exon17 c.C2360A p.A787E ACCACTGCTGATG 54 3 0.06 39 0 0 1 0 0.00 . 0 bcgsc.ca 37 1 249066288 249066288 + RNA SNP A A C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . . . . . TTATCCATGTCAT 32 11 0.34 30 0 0 0 0 PRKCQ 5588 bcgsc.ca;mdanderson.org 37 10 6470241 6470241 + Silent SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . PRKCQ NM_006257 exon18 c.C2049A p.I683I GCTGTTGATCAGT 72 5 0.07 76 0 0 113 7 0 0.00 ALDH18A1 5832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 97370021 97370021 + Silent SNP G G A rs147842812 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_002860 exon17 c.C2139T p.H713H GTCTACGTGCTGC 99 35 0.35 86 0 0 0 303 200 0.66 MUC2 4583 mdanderson.org 37 11 1092969 1092969 + Silent SNP A A T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_002457 exon30 c.A4788T p.P1596P AACCCCAACACCC 38 3 0.08 36 0 0 0 0 MUC5B 727897 broad.mit.edu 37 11 1268816 1268816 + Missense_Mutation SNP C C T rs71469871 bycluster TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . MUC5B NM_002458 exon31 c.C10706T p.T3569M TGACCACGGGCTG 224 4 0.02 245 1 0.0040816327 473 0 0 TRIM3 10612 mdanderson.org 37 11 6477339 6477339 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_006458 exon8 c.G1496A p.R499H ACGATGCGGCCGC 52 3 0.06 57 0 0 33 0 0.00 CCDC73 493860 hgsc.bcm.edu 37 11 32635415 32635415 + Silent SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001008391 exon16 c.A2449A p.K817K TTACCTGATTCTC 97 4 0.04 89 0 0 0 0 PELI3 246330 broad.mit.edu 37 11 66241455 66241455 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . PELI3 . . . . TGCCCATCCCCCT 40 3 0.08 25 0 0 36 3 0 0.00 GPR152 390212 mdanderson.org 37 11 67219445 67219445 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_206997 exon1 c.C751A p.L251M AGGGCAGCCTCAG 30 3 0.10 28 0 0 0 0 ARHGEF17 9828 broad.mit.edu 37 11 73066656 73066656 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . ARHGEF17 NM_014786 exon4 c.G3532T p.A1178S CGTGTGGCCAAGG 97 4 0.04 100 0 0 117 2 0 0.00 WNT11 7481 mdanderson.org 37 11 75905775 75905775 + Missense_Mutation SNP C C A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_004626 exon3 c.G433T p.G145C GCTCACCTGGGAC 44 3 0.07 55 0 0 4 0 0.00 C11orf82 220042 mdanderson.org 37 11 82639964 82639964 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_145018 exon4 c.G259T p.A87S CTTACTGCCACTG 55 3 0.05 63 0 0 28 0 0.00 SLC37A2 219855 mdanderson.org 37 11 124955359 124955359 + Silent SNP C C T rs144643816 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_198277 exon15 c.C1317T p.T439T CGGCACCGGCTCC 38 3 0.08 75 0 0 0 26 1 0.04 RHNO1 83695 broad.mit.edu 37 12 2997087 2997087 + Missense_Mutation SNP A A T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001257098 exon3 c.A179T p.D60V CACCTGATTTTGA 164 17 0.10 97 5 0.0515463918 218 0 0.00 DYRK4 8798 broad.mit.edu 37 12 4722809 4722809 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 DYRK4,NS,carcinoma,0,1 DYRK4 NM_003845 exon13 c.G1453A p.A485T GTAGACGCTCCCA 267 5 0.02 132 0 0 75 1 235 0 0.00 CELA1 1990 mdanderson.org 37 12 51723604 51723604 + Missense_Mutation SNP C C G rs201129231 bycluster TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001971 exon7 c.G623C p.G208A AGGGGGCCCCCAG 37 4 0.11 40 0 0 0.001 1 0 0.00 E2F7 144455 broad.mit.edu 37 12 77449827 77449827 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . E2F7 NM_203394 exon3 c.177delA p.K59fs AGTAAATTTTTTT 228 7 0.03 174 0 0 201 0 0 RFX4 5992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 106995124 106995124 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001206691 exon1 c.G70A p.E24K TCCACTGGTAATG 170 36 0.21 159 0 0 0 0 FZD10 11211 broad.mit.edu 37 12 130647553 130647553 + Missense_Mutation SNP C C A rs200800452 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 FZD10,NS,carcinoma,0,2 FZD10 NM_007197 exon1 c.C66A p.S22R CATCAGCTCCATG 107 12 0.11 97 2 0.0206185567 95 2 14 1 0.07 BASP1P1 646201 hgsc.bcm.edu 37 13 23471388 23471389 + RNA DNP AG AG GA novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . . . . . AGAGAGAGGAGAG 57 4 0.07 50 0 0 0 0 UNC79 57578 broad.mit.edu 37 14 94088894 94088894 + Missense_Mutation SNP A A G novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . UNC79 NM_020818 exon30 c.A4784G p.E1595G AGGGGGAGAAGCC 124 4 0.03 100 2 0.02 366 7 0 0.00 GOLGA8DP 0 broad.mit.edu 37 15 22709277 22709278 + RNA INS - - A rs377506667 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . . . . . GGATTCCAAAAAA 8 2 0.25 6 0 0 0 0 FAM98B 283742 broad.mit.edu 37 15 38776833 38776833 + Silent SNP T T A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 FAM98B_ENST00000397609,NS,carcinoma,0,2 FAM98B NM_173611 exon8 c.T1275A p.G425G TGGTGGTGGAGGA 148 6 0.04 78 2 0.0256410256 53 2 1 0 0.00 DISP2 85455 broad.mit.edu 37 15 40650534 40650536 + In_Frame_Del DEL CAG CAG - novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 CAG CAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . DISP2 NM_033510 exon1 c.12_14del p.4_5del CGGTGACAGCAGC 6 2 0.33 4 0 0 86 1 0 0.00 SPTBN5 51332 mdanderson.org 37 15 42185137 42185137 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_016642 exon3 c.C234A p.H78Q CAGGAAGTGCACA 42 3 0.07 34 0 0 0 0 ARIH1 25820 mdanderson.org 37 15 72767235 72767235 + Silent SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_005744 exon1 c.C255T p.G85G CGGCGGCGGTGGT 75 6 0.08 62 2 0.0322580645 0 0 VPS33B 26276 broad.mit.edu 37 15 91545330 91545330 + Missense_Mutation SNP A A G novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . VPS33B NM_018668 exon18 c.T1355C p.L452P GCTGTGAGGGTGT 140 4 0.03 92 0 0 42 64 0 0.00 HBA2 3040 broad.mit.edu 37 16 223511 223511 + Missense_Mutation SNP T T C rs281860618 bycluster TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . HBA2 NM_000517 exon3 c.T341C p.L114P CCCACCTCCCCGC 270 10 0.04 223 4 0.0179372197 3 7 0 0.00 WDR24 84219 mdanderson.org 37 16 736808 736808 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_032259 exon3 c.G1268A p.G423D GGCCGGCCAGCCA 44 3 0.07 54 0 0 25 0 0.00 BAIAP3 8938 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 1391420 1391420 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . BAIAP3 NM_003933 exon8 c.G766A p.A256T CTGCCTGCCAAGT 167 7 0.04 160 0 0 88 38 0 0.00 DNASE1L2 1775 mdanderson.org 37 16 2287219 2287219 + Missense_Mutation SNP C C A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001374 exon4 c.C234A p.S78R CCGCAGCGTGTCC 48 3 0.06 44 0 0 0 0 UBN1 29855 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 4924423 4924423 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . UBN1 NM_001079514 exon15 c.C2012T p.S671F CAGCCTCCTCGGT 100 16 0.16 64 1 0.015625 88 141 38 0.27 CRYM 1428 mdanderson.org 37 16 21289540 21289540 + Silent SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001888 exon3 c.C33A p.A11A CACCTCGGCCGCG 26 3 0.12 26 0 0 10 0 0.00 CDH16 1014 mdanderson.org 37 16 66942309 66942309 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_004062 exon18 c.A2476G p.K826E TCGCCTTCAGGGG 37 3 0.08 44 0 0 0 0 MTSS1L 92154 broad.mit.edu 37 16 70698201 70698201 + Silent SNP C C A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . MTSS1L NM_138383 exon15 c.G1623T p.G541G GGGCAGCCCAGCA 35 5 0.14 23 0 0 22 22 2 0.09 PSMD7 5713 broad.mit.edu 37 16 74335489 74335489 + Missense_Mutation SNP C C A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . PSMD7 NM_002811 exon4 c.C296A p.P99H CAGGCCCTAAACT 70 4 0.06 67 0 0 29 193 0 0.00 PKD1L2 114780 broad.mit.edu;mdanderson.org 37 16 81253925 81253925 + Silent SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 PKD1L2_ENST00000525539,rectum,carcinoma,0,2 PKD1L2 NM_001076780 exon1 c.C51A p.A17A AGTGGTGGCCCTA 140 5 0.04 146 0 0 361 2 0 0 ADAD2 161931 broad.mit.edu 37 16 84228102 84228102 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . ADAD2 NM_139174 exon3 c.C689T p.A230V GCCCTGCGGGCAC 45 3 0.07 57 0 0 46 3 0 0.00 SMG6 23293 mdanderson.org 37 17 1968954 1968954 + Silent SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_017575 exon17 c.C3855A p.G1285G GGCCAGGCCGTCC 41 3 0.07 32 0 0 34 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 193 16 0.08 227 5 0.0220264317 22 17 0.77 CDC27 996 broad.mit.edu 37 17 45234323 45234323 + Silent SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . CDC27 NM_001114091 exon7 c.A798G p.R266R TAAACTTCGACCA 60 4 0.07 47 1 0.0212765957 337 181 0 0.00 STRADA 92335 broad.mit.edu 37 17 61790804 61790804 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . STRADA NM_001003787 exon6 c.C310A p.L104I CTTCTAGGTTAAT 234 6 0.03 105 0 0 27 81 0 0.00 FASN 2194 broad.mit.edu 37 17 80043188 80043188 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . FASN NM_004104 exon24 c.C4213T p.R1405W TGGGCCGGCGGCA 222 5 0.02 156 0 0 154 225 0 0.00 ZNF491 126069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11917208 11917208 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_152356 exon3 c.T440C p.L147P TATACCTTACCCA 99 13 0.13 77 0 0 2 0 0.00 ZNF799 90576 ucsc.edu 37 19 12501830 12501830 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . ZNF799 NM_001080821 exon4 c.A1382G p.Y461C AAGGAATAGAAAT 184 5 0.03 130 1 0.0076923077 111 41 14 0.34 rescued with RNA-seq ZNF799 90576 ucsc.edu 37 19 12501855 12501855 + Missense_Mutation SNP A A G rs201077492 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . ZNF799 NM_001080821 exon4 c.T1357C p.C453R TCCCACATTTGCA 184 11 0.06 134 2 0.0149253731 111 49 18 0.37 ZSWIM4 65249 mdanderson.org 37 19 13915877 13915877 + Missense_Mutation SNP C C A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_023072 exon3 c.C627A p.S209R CATCAGCGCCCAT 44 3 0.07 45 0 0 19 0 0.00 ZNF429 353088 mdanderson.org 37 19 21720482 21720482 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001001415 exon4 c.G1627T p.G543C GAATGTGGCAAAG 51 3 0.06 49 0 0 23 0 0.00 IRF2BP1 26145 mdanderson.org 37 19 46388367 46388367 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_015649 exon1 c.G666A p.W222X CCCGTGCCATTCC 29 3 0.10 34 0 0 58 0 0.00 MZF1 7593 mdanderson.org 37 19 59073497 59073497 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_003422 exon6 c.G2147A p.R716H AAGCGGCGGCCAC 47 3 0.06 33 0 0 41 0 0.00 CEBPZ 10153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 37450403 37450403 + Missense_Mutation SNP C C G novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_005760 exon3 c.G1791C p.Q597H TGGCATCTGTTGA 146 23 0.16 116 0 0 265 61 0.23 RASSF2 9770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 4768332 4768332 + Missense_Mutation SNP T T A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_014737 exon10 c.A760T p.I254F TGGAGATCTGCTC 142 31 0.22 112 0 0 56 23 0.41 FRG1B 284802 bcgsc.ca 37 20 29628229 29628229 + Silent SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . FRG1B . . . . TTAGGGGAAAATG 493 20 0.04 394 9 0.0228426396 181 94 0 0.00 POFUT1 23509 mdanderson.org 37 20 30795757 30795757 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 POFUT1,NS,carcinoma,-2,1 POFUT1 NM_172236 exon1 c.G13T p.A5S GCCGCCGCGTGGG 17 2 0.12 9 0 0 -2 1 28 0 0.00 CDH26 60437 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 58560110 58560110 + Silent SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_177980 exon7 c.C763T p.L255L CCGTCACTGTCAT 143 20 0.14 106 0 0 0 0 KRTAP10-10 353333 mdanderson.org 37 21 46057778 46057778 + Silent SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_181688 exon1 c.G444T p.V148V CTGTGTGCCTGTC 75 4 0.05 59 0 0 0 0 MCM3AP 8888 broad.mit.edu 37 21 47704596 47704596 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . MCM3AP NM_003906 exon1 c.C605A p.A202D GTGGTAGCTGAAC 134 5 0.04 101 0 0 146 46 0 0.00 OR11H1 81061 bcgsc.ca;mdanderson.org 37 22 16449645 16449645 + Missense_Mutation SNP T T C rs145243620 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . OR11H1 NM_001005239 exon1 c.A160G p.I54V CTGTTATAGTCAG 554 43 0.08 540 0 0 44 0 0 DGCR6 8214 mdanderson.org 37 22 18897765 18897765 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_005675 exon3 c.G352A p.A118T CAGGCGGCTCAGC 50 3 0.06 37 0 0 24 0 0.00 RTN4R 65078 mdanderson.org 37 22 20229344 20229344 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_023004 exon2 c.G1312A p.G438S CGCCACCCCCGCT 59 3 0.05 51 0 0 18 0 0.00 CELSR1 9620 broad.mit.edu 37 22 46832175 46832175 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . CELSR1 NM_014246 exon4 c.A4418G p.Q1473R CTTTCCTGAGTGG 81 3 0.04 53 0 0 242 17 0 0.00 EPM2AIP1 9852 mdanderson.org 37 3 37034271 37034271 + Missense_Mutation SNP C C A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_014805 exon1 c.G298T p.A100S GGCCTGCACGAGC 53 3 0.06 30 0 0 1 0 0.00 . 0 bcgsc.ca 37 3 98378117 98378117 + RNA SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . . . . . CTCAAGGCTTACA 141 44 0.31 108 0 0 1 0 0.00 LOC220729 0 broad.mit.edu 37 3 197348646 197348646 + RNA SNP T T C rs377377382 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . . . . . CCTGCCTGCCCTT 82 5 0.06 60 1 0.0166666667 15 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55593605 55593605 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 KIT,NS,germ_cell_tumour,+2,59 KIT NM_000222 exon11 c.G1671T p.W557C ACAGTGGAAGGTT 266 28 0.11 122 0 0 2 59 622 100 0.16 MTHFD2L 441024 broad.mit.edu 37 4 75067012 75067012 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . MTHFD2L NM_001144978 exon5 c.G637T p.A213S GTTGTGGCTGGAA 138 4 0.03 143 0 0 41 1 0 0.00 DSPP 1834 bcgsc.ca 37 4 88537114 88537114 + Silent SNP C C T rs369973717 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . DSPP NM_014208 exon5 c.C3300T p.S1100S TAGCAGCGACAGC 28 8 0.29 32 0 0 174 0 0 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134072091 134072091 + Missense_Mutation SNP G G C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_032961 exon1 c.G796C p.G266R CCCCCAGGCACTC 50 9 0.18 73 0 0 0 0 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134073757 134073757 + Missense_Mutation SNP A A T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_032961 exon1 c.A2462T p.Y821F ACTGCTATCAGGT 77 12 0.16 109 0 0 1 1 1.00 MAN2A1 4124 mdanderson.org 37 5 109103372 109103372 + Silent SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_002372 exon6 c.G972A p.L324L TGCACTGCATAAA 55 4 0.07 53 0 0 4 0 0.00 FBN2 2201 mdanderson.org 37 5 127873220 127873220 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001999 exon1 c.C77T p.T26M CCGGCCGTGCCCT 24 3 0.13 50 0 0 0 0 BTN2A3P 0 broad.mit.edu;mdanderson.org 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 BTN2A3,NS,carcinoma,0,9 . . . . . ATGGAACCAGCTG 130 6 0.05 113 0 0 9 0 0 ZNF322 79692 broad.mit.edu 37 6 26637624 26637624 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001242797 exon5 c.1158delA p.K386fs AAGACCTTTTTCA 833 8 0.01 727 0 0 31 0 0.00 VWA7 80737 broad.mit.edu 37 6 31733784 31733784 + Missense_Mutation SNP A A C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_025258 exon16 c.T2375G p.V792G TCTGGGACCTCCA 108 37 0.34 69 20 0.2898550725 1 0 0.00 HLA-DOA 3111 broad.mit.edu 37 6 32975873 32975873 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . HLA-DOA NM_002119 exon2 c.A248G p.Q83R CCGCCCTGCGGGT 107 4 0.04 69 1 0.0144927536 22 31 0 0.00 KLHL31 401265 mdanderson.org 37 6 53516646 53516646 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001003760 exon3 c.A1655G p.Q552R CCCACCTGCAGCG 32 3 0.09 25 0 0 0 0 IGF2R 3482 broad.mit.edu 37 6 160509121 160509121 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 IGF2R,NS,carcinoma,0,3 IGF2R NM_000876 exon42 c.G6262A p.A2088T AAGACCGCATCCT 116 4 0.03 94 0 0 251 3 118 1 0.01 RAC1 5879 broad.mit.edu 37 7 6441622 6441622 + Missense_Mutation SNP A A G novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . RAC1 NM_018890 exon6 c.A469G p.T157A CCCATCACCTATC 116 3 0.03 74 0 0 101 798 2 0.00 GTF2IRD2P1 0 broad.mit.edu;bcgsc.ca 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . . . . . CCGGGGTCCTTGA 177 7 0.04 105 1 0.0095238095 0 0 GTF2I 2969 broad.mit.edu 37 7 74148279 74148279 + Missense_Mutation SNP A A G rs1135649 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 GTF2I,NS,carcinoma,0,7 GTF2I NM_032999 exon16 c.A1319G p.N440S TTCTGAATTCAAC 638 6 0.01 415 1 0.0024096386 40 7 485 0 0.00 SSPO 23145 mdanderson.org 37 7 149523792 149523792 + Missense_Mutation SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_198455 exon103 c.C14602T p.P4868S TGTGTGCCTCCCA 21 2 0.10 18 0 0 0 0 UBE3C 9690 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 157023941 157023941 + Missense_Mutation SNP T T C novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . UBE3C NM_014671 exon18 c.T2401C p.Y801H CTTCTGTACCCCA 221 46 0.21 145 1 0.0068965517 124 176 40 0.23 DUSP4 1846 mdanderson.org 37 8 29207399 29207399 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001394 exon1 c.C397T p.R133C CGTTGCGGCGCAG 10 2 0.20 10 0 0 3 0 0.00 AK3 50808 mdanderson.org 37 9 4741004 4741004 + Silent SNP A A G novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_001199852 exon1 c.T84C p.T28T GTGTGTAGTGATG 60 3 0.05 93 0 0 16 0 0.00 SIGMAR1 10280 mdanderson.org 37 9 34637553 34637553 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_147157 exon1 c.C142T p.Q48X CGTACTGCCGCGC 48 3 0.06 14 0 0 75 0 0.00 RC3H2 54542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125643061 125643061 + Missense_Mutation SNP C C G novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_018835 exon6 c.G772C p.D258H CTTCATCTCTTTT 86 15 0.17 88 0 0 48 20 0.42 TTF1 7270 mdanderson.org 37 9 135277780 135277780 + Missense_Mutation SNP G G T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_007344 exon2 c.C429A p.D143E AAATTTGTCTGTT 92 4 0.04 75 0 0 42 0 0.00 RABL6 55684 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 139702690 139702690 + Silent SNP C C T novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_024718 exon1 c.C42T p.A14A CCAGGCCCCGGGC 81 29 0.36 103 0 0 38 9 0.24 ND4 0 hgsc.bcm.edu;broad.mit.edu 37 MT 11796 11796 + Missense_Mutation SNP A A G novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . ENST00000361381 exon1 c.A1037G p.Q346R TCTCTCAAGGACT 29 5 0.17 13 0 0 0 0 MID2 11043 mdanderson.org 37 X 107084386 107084386 + Missense_Mutation SNP G G A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_052817 exon2 c.G491A p.R164H GTGACCGTTGCCT 54 3 0.06 64 0 0 4 0 0.00 GABRE 2564 broad.mit.edu 37 X 151123181 151123181 + Missense_Mutation SNP T T A novel TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . GABRE NM_004961 exon9 c.A1513T p.N505Y ACAAGTTAAGGCA 110 14 0.13 114 7 0.0614035088 141 0 0 ABCD1 215 mdanderson.org 37 X 153008731 153008731 + Missense_Mutation SNP G G T rs200460000 TCGA-2G-AAHT-01A-11D-A42Y-10 TCGA-2G-AAHT-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 17178935-8114-4de7-abd2-9f4df326a495 9dd4b0d8-774d-4b6c-b2d1-f75b413982d5 . . NM_000033 exon9 c.G1922T p.G641V TGGAAGGCAAGAT 62 9 0.15 59 1 0.0169491525 22 0 0.00