Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AHDC1 27245 mdanderson.org 37 1 27875938 27875938 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001029882 exon6 c.C2689A p.P897T CCACTGGGCTGGC 41 3 0.07 57 0 0 48 0 0.00 EPHA10 284656 mdanderson.org 37 1 38227156 38227156 + Silent SNP G G T rs140939937 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_173641 exon3 c.C771A p.G257G GTCGGCGCCGCAG 18 2 0.11 15 0 0 0 0 SEC22B 9554 broad.mit.edu 37 1 145109259 145109260 + RNA INS - - A rs11386827 bycluster;by1000genomes TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . CCAGCCCGGGGGC 7 2 0.29 7 0 0 0 0 SKIDA1 387640 mdanderson.org 37 10 21805737 21805737 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_207371 exon4 c.C1015A p.H339N GGTGGTGGTGGTG 20 3 0.15 23 0 0 9 1 0.11 PTCHD3 374308 broad.mit.edu 37 10 27702322 27702322 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . PTCHD3 NM_001034842 exon1 c.C858A p.P286P GTAGGCGGGGAAG 78 3 0.04 80 0 0 140 0 0 BMS1 9790 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 43312871 43312871 + Missense_Mutation SNP G G C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_014753 exon15 c.G2509C p.D837H ATGTTTGATGCAG 53 19 0.36 58 0 0 78 32 0.41 . 0 bcgsc.ca 37 10 67008403 67008403 + RNA SNP G G C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . TTCCTGGATCTTC 47 20 0.43 60 0 0 0 0 MICU1 10367 mdanderson.org 37 10 74128106 74128106 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001195518 exon12 c.C1278A p.G426G CAGTTCGCCATTG 58 3 0.05 59 0 0 100 0 0.00 PDLIM1 9124 bcgsc.ca 37 10 97006973 97006973 + Silent SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . PDLIM1 NM_020992 exon5 c.A684G p.K228K ATTACCTTTTTCT 64 4 0.06 56 0 0 33 279 0 0.00 WNT8B 7479 mdanderson.org 37 10 102242248 102242248 + Missense_Mutation SNP G G T rs143970308 alternate_allele TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_003393 exon6 c.G731T p.R244L CTACCCGGGAGCT 8 1 0.13 13 0 0 0 0 FBXW4 6468 bcgsc.ca 37 10 103371159 103371159 + Silent SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . FBXW4 NM_022039 exon9 c.G1128A p.P376P CGTCAGCGGGAAG 55 4 0.07 68 0 0 39 186 0 0.00 MUC2 4583 mdanderson.org 37 11 1093342 1093342 + Missense_Mutation SNP C C A rs55695633 alternate_allele TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 MUC2_ENST00000441003,NS,carcinoma,-2,2 MUC2_ENST00000441003 NM_002457 exon30 c.C5161A p.P1721T CCAACCCCGACAC 36 3 0.08 38 0 0 -2 2 0 0 LOC650368 0 broad.mit.edu 37 11 3424836 3424836 + RNA SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . ACAACTGACTCTT 273 6 0.02 375 2 0.0053333333 0 0 PGAP2 27315 mdanderson.org 37 11 3845201 3845201 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001256236 exon5 c.C608T p.S203L TGCACTCGGCGCC 48 3 0.06 67 1 0.0149253731 47 0 0.00 ARHGAP1 392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46717282 46717282 + Missense_Mutation SNP C C G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_004308 exon3 c.G157C p.E53Q CAAGTTCCGGGGA 111 36 0.32 114 0 0 67 18 0.27 TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 78380844 78380844 + Silent SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001098816 exon32 c.G6546A p.K2182K TCCTACCTTCAGC 160 56 0.35 212 0 0 16 10 0.63 PICALM 8301 mdanderson.org 37 11 85701308 85701308 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_007166 exon13 c.C1393A p.H465N TTTCATGAGTAGG 36 3 0.08 61 0 0 13 0 0.00 FAT3 120114 hgsc.bcm.edu;mdanderson.org 37 11 92535075 92535075 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001008781 exon9 c.G8896T p.G2966X ATTACAGGTGAGT 92 4 0.04 115 0 0 0 0 ELMOD1 55531 broad.mit.edu 37 11 107521086 107521086 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . ELMOD1 NM_018712 exon8 c.G580T p.A194S GCCACAGCAGCTC 66 3 0.05 93 0 0 40 2 0 0.00 FAM118B 79607 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 126126463 126126463 + Missense_Mutation SNP G G C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_024556 exon7 c.G698C p.R233T TCCAGAGAGAAAT 47 17 0.36 53 0 0 41 21 0.51 GPR162 27239 broad.mit.edu 37 12 6933730 6933730 + Silent SNP T T G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . GPR162 NM_019858 exon2 c.T666G p.G222G GGGTGGTGGGGGG 189 26 0.14 55 7 0.1272727273 55 0 0 GYS2 2998 broad.mit.edu 37 12 21690032 21690032 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 GYS2,NS,carcinoma,0,1 GYS2 NM_021957 exon16 c.C1968A p.S656R ATCACTGCTCTGA 978 7 0.01 392 1 0.0025510204 110 1 0 0 FGD4 121512 broad.mit.edu 37 12 32764204 32764204 + Missense_Mutation SNP G G T rs281865063 alternate_allele TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 FGD4,NS,carcinoma,0,1 FGD4 NM_139241 exon10 c.G1325T p.R442L AAGAACGCTACCT 272 4 0.01 107 0 0 86 1 5 0 0.00 CPSF6 11052 broad.mit.edu 37 12 69646900 69646900 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . CPSF6 NM_007007 exon3 c.340delT p.F114fs ATAAAATTTTTTG 2833 7 0.00 513 0 0 96 70 0 0.00 MIR620 693205 hgsc.bcm.edu 37 12 116586420 116586420 + RNA SNP A A C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . CTATATATATATA 422 26 0.06 365 0 0 0 0 NCOR2 9612 broad.mit.edu 37 12 124887093 124887093 + Silent SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 NCOR2_ENST00000405201,NS,carcinoma,0,11 NCOR2 NM_006312 exon16 c.G1497A p.Q499Q CTGCTGCTGTTGT 63 3 0.05 54 0 0 475 11 39 0 0.00 STOML3 161003 mdanderson.org 37 13 39542579 39542579 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_145286 exon6 c.C609A p.S203S TGCCATGGATCTC 39 3 0.08 61 0 0 1 0 0.00 . 0 broad.mit.edu 37 13 52855307 52855308 + RNA DEL GC GC - novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 GC GC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . GTGTGTGCGCGCG 7 3 0.43 4 0 0 0 0 HERC2 8924 broad.mit.edu 37 15 28483779 28483779 + Missense_Mutation SNP C C A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . HERC2 NM_004667 exon24 c.G3717T p.Q1239H CTGTGTCTGGAAG 530 7 0.01 465 0 0 501 3 0 0.00 NEIL1 79661 ucsc.edu 37 15 75646086 75646086 + Missense_Mutation SNP A A G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . NEIL1 NM_001256552 exon6 c.A983G p.K328R GGGGCAAAGGCTA 82 2 0.02 83 0 0 36 13 10 0.77 rescued with RNA-seq SOLH 6650 mdanderson.org 37 16 602443 602443 + Missense_Mutation SNP G G A rs148952789 TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_005632 exon11 c.G2650A p.V884I TGCGACGTCATGC 34 3 0.09 30 0 0 0 34 0 0.00 UBN1 29855 mdanderson.org 37 16 4924755 4924755 + Missense_Mutation SNP A A G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001079514 exon15 c.A2344G p.K782E AAAGCTAAGCACC 44 3 0.07 41 0 0 25 0 0.00 CDR2 1039 broad.mit.edu 37 16 22359014 22359014 + Silent SNP G G T rs372632705 alternate_allele TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . CDR2 NM_001802 exon5 c.C637A p.R213R TCTGCCGCTCCAG 128 3 0.02 122 0 0 34 73 0 0.00 ZNF629 23361 mdanderson.org 37 16 30793488 30793488 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001080417 exon3 c.C2161A p.Q721K AGCTTTGTTTGCA 56 4 0.07 61 0 0 29 0 0.00 CES2 8824 broad.mit.edu 37 16 66974255 66974255 + Missense_Mutation SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . CES2 NM_003869 exon4 c.T746C p.F249S GCTTCTTCAGGTG 182 3 0.02 120 1 0.0083333333 43 68 0 0.00 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 89347466 89347466 + Silent SNP C C T rs140164595 TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001256183 exon9 c.G5484A p.S1828S TTCCATCGAGGGT 56 25 0.45 41 0 0 0 92 33 0.36 CDK10 8558 mdanderson.org 37 16 89762054 89762054 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_052988 exon13 c.C1037T p.A346V AGCGGGCCGCCCC 41 3 0.07 30 0 0 238 1 0.00 FBXW10 10517 broad.mit.edu 37 17 18659367 18659367 + Missense_Mutation SNP A A G rs3826385 bycluster TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 FBXW10,NS,carcinoma,0,1 FBXW10 NM_001267585 exon6 c.A1132G p.N378D GAGTACAACCTGT 175 47 0.27 113 1 0.0088495575 82 1 0 0 FBXW10 10517 broad.mit.edu;mdanderson.org 37 17 18673363 18673363 + Splice_Site SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . FBXW10 NM_001267585 exon11 c.T1971C p.G657G CAGAGGTGATCCT 178 10 0.06 205 1 0.0048780488 82 0 0 CDRT15L2 256223 bcgsc.ca 37 17 20483760 20483760 + Missense_Mutation SNP C C G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . CDRT15L2 NM_001190790 exon2 c.C564G p.D188E CGGAGACCAGGGC 168 89 0.53 108 8 0.0740740741 5 0 0 SUPT6H 6830 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 27026839 27026839 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . SUPT6H NM_003170 exon33 c.C4489T p.R1497W CGGTACCGGGGCC 136 5 0.04 98 0 0 165 202 0 0.00 SLFN14 342618 broad.mit.edu 37 17 33875849 33875849 + Silent SNP A A G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . SLFN14 NM_001129820 exon4 c.T2148C p.L716L AGGGGGAAGGCCA 140 3 0.02 109 0 0 43 0 0 AOC2 314 broad.mit.edu 37 17 40997660 40997660 + Silent SNP C C T rs149144895 bycluster;byfrequency;by1000genomes TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . AOC2 NM_009590 exon1 c.C1017T p.S339S GTTCAGCGGCCTG 282 6 0.02 219 0 0 61 3 0 0.00 KIF2B 84643 broad.mit.edu 37 17 51902397 51902397 + Missense_Mutation SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 KIF2B,right_upper_lobe,carcinoma,+1,1 KIF2B NM_032559 exon1 c.T2003C p.V668A TCCACGTGAAGAG 83 5 0.06 84 0 0 254 1 0 0 C17orf58 284018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65989082 65989082 + Missense_Mutation SNP C C G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_181656 exon2 c.G181C p.V61L GACCTACAGCCCG 285 83 0.29 213 0 0 9 3 0.33 SOCS3 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 76354724 76354724 + Silent SNP C C T rs371734270 TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . SOCS3 NM_003955 exon2 c.G453A p.P151P GGCAGACGGCTGC 76 19 0.25 90 1 0.0111111111 16 221 58 0.26 CARD14 79092 broad.mit.edu 37 17 78172269 78172269 + Missense_Mutation SNP A A G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . CARD14 NM_024110 exon13 c.A1730G p.D577G AGGGGGATGCATT 191 4 0.02 130 1 0.0076923077 98 2 0 0.00 DSC2 1824 broad.mit.edu 37 18 28671012 28671012 + Silent SNP A A G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . DSC2 NM_024422 exon4 c.T453C p.P151P TGGAAAAGGACCC 203 4 0.02 103 0 0 168 47 0 0.00 GALR1 2587 mdanderson.org 37 18 74962637 74962637 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001480 exon1 c.G133T p.A45S ATCTTCGCGCTGG 30 2 0.07 61 1 0.0163934426 1 0 0.00 ADAMTSL5 339366 mdanderson.org 37 19 1506169 1506169 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_213604 exon12 c.G1261A p.A421T GGGGTGCCAGCAT 59 4 0.07 56 0 0 11 0 0.00 MAP1S 55201 mdanderson.org 37 19 17837039 17837039 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_018174 exon5 c.G846T p.L282L GCACCTGGACCGC 57 3 0.05 52 0 0 100 0 0.00 IRGQ 126298 mdanderson.org 37 19 44097051 44097051 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 IRGQ,colon,carcinoma,0,1 IRGQ NM_001007561 exon3 c.C999A p.G333G GCCCTCGCCGTCT 39 3 0.08 60 0 0 0 1 6 0 0.00 RPL18 6141 mdanderson.org 37 19 49118703 49118703 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_000979 exon7 c.C493A p.P165T CGTAGGGTCTGTG 51 3 0.06 86 0 0 6036 3 0.00 DBP 1628 mdanderson.org 37 19 49136911 49136911 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001352 exon3 c.C552A p.G184G GGTCAGGCCTTGG 46 3 0.07 31 0 0 21 0 0.00 NLRP12 91662 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 54304502 54304502 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 NLRP12,caecum,carcinoma,0,1 NLRP12 NM_144687 exon7 c.T2735A p.L912H TTGCACGTGGGAT 50 4 0.08 79 0 0 0 1 2 0 0.00 TMEM86B 255043 mdanderson.org 37 19 55739615 55739615 + Missense_Mutation SNP A A T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_173804 exon2 c.T242A p.L81H CACACAAGGGCTC 51 3 0.06 55 0 0 17 0 0.00 MYADML 0 broad.mit.edu 37 2 33951855 33951858 + RNA DEL AGAG AGAG - novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 AGAG AGAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . AACAAAAGAGAGA 10 7 0.70 11 0 0 0 0 EPAS1 2034 broad.mit.edu 37 2 46605215 46605215 + Missense_Mutation SNP A A T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . EPAS1 NM_001430 exon10 c.A1432T p.S478C AGCAGCAGCTGCT 89 4 0.04 54 0 0 83 29 0 0.00 WASH2P 0 broad.mit.edu 37 2 114355768 114355769 + RNA INS - - GCCC rs61637331 TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . GGCCCTGTCCCCG 7 2 0.29 14 0 0 5 0 0.00 TMEM194B 100131211 mdanderson.org 37 2 191383892 191383892 + Silent SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001142645 exon3 c.A231G p.P77P CAGGCCTGGACTG 48 3 0.06 66 0 0 4 0 0.00 MFF 56947 broad.mit.edu 37 2 228211978 228211978 + Silent SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . MFF NM_020194 exon8 c.T630C p.P210P CTGTCCTCCCCAT 172 3 0.02 171 0 0 48 63 0 0.00 ADAM33 80332 mdanderson.org 37 20 3653452 3653452 + Silent SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_025220 exon12 c.G1227A p.P409P GGGGTCCGGGGCA 18 2 0.11 25 0 0 4 0 0.00 APCDD1L 164284 mdanderson.org 37 20 57045759 57045759 + Missense_Mutation SNP G G A rs147147447 bycluster TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_153360 exon2 c.C94T p.R32C CCCAGCGCAGGCA 44 3 0.07 40 0 0 0 1 0 0.00 ZNF512B 57473 mdanderson.org 37 20 62594730 62594730 + Silent SNP G G A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_020713 exon11 c.C1762T p.L588L GCTTCAGCACCTT 24 2 0.08 18 0 0 36 0 0.00 ANKRD20A11P 0 broad.mit.edu 37 21 15352291 15352291 + RNA SNP A A C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . CTTTTCACCTCCC 31 10 0.32 29 11 0.3793103448 0 0 RIBC2 26150 bcgsc.ca 37 22 45813494 45813494 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . RIBC2 . . . . AAATGAGGCAAAA 171 6 0.04 185 0 0 25 5 0 0.00 PKDREJ 10343 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 22 46658471 46658471 + Missense_Mutation SNP G G T rs149432283 bycluster;byfrequency;alternate_allele TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_006071 exon1 c.C749A p.P250Q GCGGCCGGGCAGT 67 4 0.06 62 0 0 0 0 SHANK3 85358 ucsc.edu;bcgsc.ca 37 22 51117453 51117453 + Silent SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . SHANK3 NM_033517 exon6 c.C607T p.L203L ACCCTGCTGGACC 29 4 0.14 35 0 0 96 15 0 0.00 SLC22A13 9390 bcgsc.ca;mdanderson.org 37 3 38317788 38317788 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 SLC22A13,right_upper_lobe,carcinoma,+1,2 SLC22A13 NM_004256 exon8 c.G1248T p.V416V GCCCGTGGTGGTC 86 5 0.06 86 0 0 42 2 0 0 EPHA6 285220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 96706454 96706454 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001080448 exon3 c.C731T p.T244I TCGACACAATTGC 172 41 0.24 186 0 0 2 1 0.50 HCLS1 3059 broad.mit.edu 37 3 121354648 121354648 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . HCLS1 NM_005335 exon9 c.G625A p.A209T CGACAGCGCTCTG 98 3 0.03 64 0 0 78 124 0 0.00 YEATS2 55689 broad.mit.edu 37 3 183493770 183493770 + Silent SNP A A C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 YEATS2,colon,carcinoma,0,2 YEATS2 NM_018023 exon18 c.A2436C p.G812G AGGAGGAGGCGGC 40 3 0.08 31 0 0 111 2 0 0 MUC4 4585 bcgsc.ca 37 3 195505805 195505805 + Missense_Mutation SNP A A C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . MUC4 NM_018406 exon2 c.T12646G p.S4216A ATGCTGAGGAAGT 153 9 0.06 134 2 0.0149253731 1505 0 0 MUC4 4585 bcgsc.ca 37 3 195508165 195508165 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . MUC4 NM_018406 exon2 c.G10286A p.S3429N GAAGTGCTGGTGA 264 15 0.06 191 4 0.0209424084 1505 0 0 UCHL1 7345 mdanderson.org 37 4 41259027 41259027 + Splice_Site SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_004181 exon1 c.33+1G>T . CCCGAGGTGAGCG 96 4 0.04 127 2 0.0157480315 2 0 0.00 . 0 bcgsc.ca 37 4 49244875 49244875 + RNA SNP T T A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . GAAGAGTGCTGAG 7 4 0.57 29 3 0.1034482759 1 0 0.00 . 0 bcgsc.ca 37 4 49244932 49244932 + RNA SNP C C T rs201474862 bycluster TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . TCATTGCTATTTT 11 7 0.64 19 0 0 0 0 LARP1B 55132 mdanderson.org 37 4 129019452 129019452 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 LARP1B_ENST00000427266,NS,carcinoma,+2,2 LARP1B_ENST00000427266 NM_178043 exon8 c.G780T p.Q260H TGTTCAGGCTCTC 92 4 0.04 76 0 0 2 2 29 0 0.00 ZFP42 132625 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 188924033 188924033 + Silent SNP G G A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_174900 exon4 c.G72A p.G24G CAGTGGGGCTAAG 169 77 0.46 211 0 0 8 2 0.25 FER 2241 broad.mit.edu 37 5 108168539 108168539 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . FER NM_005246 exon4 c.G276T p.L92F GGACTTGAACTCT 241 7 0.03 290 1 0.0034482759 100 3 0 0.00 PCDHB8 56128 hgsc.bcm.edu 37 5 140559196 140559196 + Silent SNP G G T rs146788088 alternate_allele TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 PCDHB8,NS,carcinoma,+1,1 PCDHB8 NM_019120 exon1 c.G1581T p.A527A GCAGGCGTTCGAG 78 4 0.05 85 2 0.0235294118 1 1 0 0 TNIP1 10318 mdanderson.org 37 5 150439917 150439917 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_001252385 exon5 c.C397A p.Q133K AATTCTGCTCCTC 47 3 0.06 42 0 0 169 0 0.00 MTCH1 23787 mdanderson.org 37 6 36953795 36953795 + Missense_Mutation SNP C C A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_014341 exon1 c.G155T p.R52L GGGTGGCGAGGAT 34 3 0.09 21 0 0 211 0 0.00 DST 667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56422278 56422278 + Missense_Mutation SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_015548 exon40 c.A6610G p.R2204G GTTGTCTATCAAT 142 43 0.30 154 0 0 1 0 0.00 MAP3K7 6885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 91254350 91254350 + Silent SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 MAP3K7_ENST00000369329,NS,carcinoma,-1,1 MAP3K7_ENST00000369329 NM_145331 exon12 c.C1212A p.A404A GGAATAGGCTGCA 188 60 0.32 154 0 0 -1 1 19 6 0.32 UST 10090 broad.mit.edu 37 6 149262435 149262435 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . UST NM_005715 exon3 c.G312T p.Q104H AAGCCAGGTGGTG 209 4 0.02 195 0 0 42 4 0 0.00 SDK1 221935 mdanderson.org 37 7 4198179 4198179 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_152744 exon31 c.G4725T p.Q1575H GCTGCAGGATGGT 52 3 0.06 38 0 0 26 0 0.00 DAGLB 221955 broad.mit.edu 37 7 6485734 6485734 + Splice_Site SNP A A C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . DAGLB NM_139179 exon2 c.T97G p.W33G CAATCCACCTGGC 112 35 0.31 71 21 0.2957746479 74 20 0 0.00 MYO1G 64005 broad.mit.edu 37 7 45016249 45016249 + Missense_Mutation SNP A A C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . MYO1G NM_033054 exon3 c.T312G p.S104R TGCCCCACTCTCC 175 8 0.05 154 6 0.038961039 86 1 0 0.00 GIGYF1 64599 mdanderson.org 37 7 100280727 100280727 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_022574 exon19 c.C2320A p.L774I CCAGGAGCGTCTT 35 3 0.09 22 0 0 100 0 0.00 LHFPL3 375612 mdanderson.org 37 7 103969251 103969251 + Silent SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 LHFPL3,NS,carcinoma,0,1 LHFPL3 NM_199000 exon1 c.C24T p.A8A CGCTGCCGCCGCC 51 3 0.06 39 0 0 0 1 0 0 LRGUK 136332 broad.mit.edu 37 7 133943050 133943050 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 LRGUK,NS,carcinoma,+1,1 LRGUK NM_144648 exon19 c.G2240T p.R747L TGTTTCGGTTCTG 295 6 0.02 206 0 0 113 1 0 0 PRSS3P2 0 broad.mit.edu 37 7 142480429 142480430 + RNA INS - - AC novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . GCAATTATCAGGA 6 2 0.33 4 0 0 0 0 ZNF775 285971 broad.mit.edu;mdanderson.org 37 7 150094605 150094605 + Missense_Mutation SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . ZNF775 NM_173680 exon3 c.T1036C p.F346L CGCGGCTTCCGCC 14 5 0.36 10 0 0 34 21 4 0.19 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 152012230 152012230 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 MLL3_ENST00000355193,NS,carcinoma,0,2 MLL3_ENST00000355193 NM_170606 exon4 c.C583T p.Q195X TTCTCTGTCCTCT 274 71 0.26 215 0 0 0 2 0 0 . 0 broad.mit.edu 37 8 88613386 88613386 + RNA DEL T T - novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . TAATACTTTTTTT 6 2 0.33 7 0 0 0 0 MLLT3 4300 hgsc.bcm.edu 37 9 20414373 20414373 + Silent SNP G G A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 MLLT3,NS,carcinoma,0,4 MLLT3 NM_004529 exon5 c.C471T p.S157S GCTGCTGCTACTG 42 4 0.10 36 1 0.0277777778 0 4 4 0 0.00 FAM221B 392307 broad.mit.edu 37 9 35826017 35826017 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . FAM221B NM_001012446 exon2 c.C142A p.P48T CTAACGGGGTCTC 101 4 0.04 84 0 0 38 0 0 . 0 broad.mit.edu 37 9 66464851 66464851 + RNA DEL A A - novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . AGTTTTACAAATT 6 3 0.50 9 0 0 7 0 0.00 PALM2 445815 bcgsc.ca 37 9 112629770 112629770 + Splice_Site SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . PALM2 NM_001037293 exon3 c.52-1G>T . TTTCAAGGAAAAA 62 4 0.06 48 0 0 51 0 0 MAN1B1 11253 broad.mit.edu;mdanderson.org 37 9 140002112 140002112 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . MAN1B1 NM_016219 exon12 c.C1894T p.R632W TTCACACGGGTGA 39 3 0.08 24 0 0 40 209 0 0.00 RNR1 6052 hgsc.bcm.edu 37 MT 820 820 + RNA SNP G G A novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . ACAGCAGTGATTA 163 13 0.08 190 0 0 0 0 CXorf28 100129464 hgsc.bcm.edu 37 X 3202175 3202175 + RNA SNP A A G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . . . . . ATACTAATTCTCC 106 43 0.41 90 0 0 0 0 CTPS2 56474 broad.mit.edu 37 X 16711311 16711311 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . CTPS2 NM_001144002 exon6 c.C592A p.Q198K TGTTTTGGGTGGG 205 4 0.02 132 0 0 49 68 0 0.00 CCNB3 85417 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 50053935 50053935 + Silent SNP T T C novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . . NM_033031 exon5 c.T2766C p.N922N CATCAATGAGGCA 214 10 0.05 162 0 0 1 0 0.00 CYLC1 1538 broad.mit.edu 37 X 83129489 83129489 + Silent SNP A A G novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . CYLC1 NM_021118 exon4 c.A1773G p.K591K TGAAAAAGGGGAA 289 4 0.01 232 0 0 272 0 0 RNF128 79589 broad.mit.edu 37 X 105937558 105937558 + Missense_Mutation SNP C C T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . RNF128 NM_024539 exon1 c.C326T p.A109V AAACAGCGGGCAG 318 4 0.01 252 0 0 74 4 0 0.00 NKRF 55922 broad.mit.edu 37 X 118724147 118724147 + Missense_Mutation SNP G G T novel TCGA-2G-AAH4-01A-12D-A42Y-10 TCGA-2G-AAH4-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a76ac28a-7e0c-4ca4-ad0e-109bf04deac8 09fe59f5-a2c3-4148-aac8-4b370b8cfae1 . NKRF NM_001173487 exon4 c.C1286A p.P429H TAAGTGGGCTGTG 89 3 0.03 52 2 0.0384615385 121 36 0 0.00