Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ACAP3 116983 broad.mit.edu 37 1 1229472 1229472 + Silent SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . ACAP3 NM_030649 exon22 c.C2247A p.T749T TCACCCGGTGCGG 129 4 0.03 148 0 0 87 44 0 0.00 MIB2 142678 mdanderson.org 37 1 1565765 1565765 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_080875 exon20 c.G3068T p.R1023L AGGAACGCATCAC 28 3 0.11 43 0 0 50 0 0.00 SLC2A5 6518 mdanderson.org 37 1 9101770 9101770 + Silent SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001135585 exon5 c.C645T p.S215S GTGGTGGCTTTGG 45 3 0.07 69 0 0 0 0 CROCC 9696 mdanderson.org 37 1 17298008 17298008 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_014675 exon36 c.G5833T p.V1945L CTGGAGGTGGATG 10 2 0.20 9 0 0 64 0 0.00 ATP8B2 57198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 154321404 154321404 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_020452 exon28 c.G3482T p.G1161V GCTCCGGCTATGC 196 70 0.36 139 0 0 113 32 0.28 LYST 1130 broad.mit.edu 37 1 235922371 235922371 + Missense_Mutation SNP C C T rs147791378 bycluster;by1000genomes TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . LYST NM_000081 exon23 c.G6782A p.R2261H GGCCAACGGCCAA 162 4 0.02 128 0 0 370 5 0 0.00 ARMC3 219681 broad.mit.edu 37 10 23297852 23297852 + Silent SNP A A G novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . ARMC3 NM_173081 exon16 c.A2037G p.K679K AGAAAAAGGATGG 335 5 0.01 355 0 0 102 0 0 . 0 broad.mit.edu 37 10 48968566 48968566 + RNA SNP A A G rs80150874 TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . GATAACAAACTGG 43 4 0.09 64 1 0.015625 0 0 SPOCK2 9806 mdanderson.org 37 10 73822859 73822859 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001244950 exon10 c.C1053A p.S351R ACCGCTGCTCTGG 54 3 0.06 97 0 0 49 0 0.00 FBXO3 26273 broad.mit.edu 37 11 33772131 33772131 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . FBXO3 NM_012175 exon8 c.C886A p.L296I AGCTAAGTTCTGG 159 4 0.03 151 0 0 37 33 0 0.00 XRRA1 143570 mdanderson.org 37 11 74559215 74559215 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_182969 exon15 c.C1649A p.P550Q CGCTCTGGGCTGA 37 3 0.08 44 0 0 14 0 0.00 DSCAML1 57453 mdanderson.org 37 11 117389460 117389460 + Missense_Mutation SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_020693 exon7 c.G1411A p.V471I ACGAGACGATGCG 37 3 0.08 41 0 0 0 0 MLL 4297 mdanderson.org 37 11 118373743 118373743 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001197104 exon27 c.G7136T p.R2379M GGCAAAGGAATGA 40 3 0.08 42 0 0 15 0 0.00 . 0 broad.mit.edu 37 12 8718254 8718255 + RNA INS - - A rs35942136 bycluster;by1000genomes TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . TCACTGCAAAAAA 7 3 0.43 4 0 0 0 0 PRH2 5555 broad.mit.edu 37 12 11083460 11083460 + Silent SNP T T C novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . PRH2 NM_001110213 exon3 c.T300C p.H100H AGGCCATCCCCCT 1456 19 0.01 521 5 0.009596929 18 6 0 0.00 TUBA1C 84790 ucsc.edu 37 12 49666152 49666152 + Silent SNP G G A rs199599214 byfrequency TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 TUBA1C,colon,carcinoma,0,1 TUBA1C NM_032704 exon4 c.G492A p.K164K CAAGAAGTCCAAG 326 27 0.08 296 22 0.0743243243 32 1 1333 803 0.60 LARP4 113251 broad.mit.edu 37 12 50869341 50869341 + Silent SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . LARP4 NM_052879 exon16 c.C1869T p.C623C AGTGTGCCAGAAG 142 4 0.03 133 0 0 58 64 0 0.00 NACA 4666 broad.mit.edu 37 12 57112386 57112386 + Silent SNP A A G novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . NACA . . . . AGCTGGACCTCCT 62 5 0.08 69 2 0.0289855072 131 0 0 RASSF3 283349 mdanderson.org 37 12 65004442 65004442 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_178169 exon1 c.G30T p.E10D GGAGGAGGACGCC 43 3 0.07 40 0 0 13 0 0.00 C1QTNF9 338872 hgsc.bcm.edu 37 13 24895902 24895902 + Missense_Mutation SNP C C A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 C1QTNF9,bladder,carcinoma,0,1 C1QTNF9 NM_178540 exon4 c.C998A p.P333Q GCAGCCCGTGACA 88 6 0.07 109 2 0.0183486239 0 1 1 0 0.00 PCCA 5095 mdanderson.org 37 13 100959515 100959515 + Splice_Site SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001178004 exon15 c.1353+1G>T . TCAAAAGTTAGTT 43 3 0.07 53 0 0 0 0 PCK2 5106 mdanderson.org 37 14 24566126 24566126 + Silent SNP T T C novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001018073 exon2 c.T55C p.L19L AGCCCCTTGGGCT 62 3 0.05 50 0 0 49 0 0.00 MIA2 0 broad.mit.edu 37 14 39716705 39716705 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . MIA2 NM_054024 exon4 c.G927T p.W309C TGGTTGGTTTGGT 97 3 0.03 79 0 0 82 1 0 0.00 ATPBD4 89978 mdanderson.org 37 15 35703064 35703064 + Missense_Mutation SNP A A G novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 ATPBD4,NS,carcinoma,+1,1 ATPBD4 NM_080650 exon6 c.T539C p.L180P TGATCCAGGGTTT 22 3 0.14 36 0 0 1 1 18 0 0.00 CASC5 57082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 40949336 40949336 + Missense_Mutation SNP A A T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_170589 exon24 c.A6659T p.H2220L CCCAGCATCAGTT 220 49 0.22 146 0 0 34 14 0.41 IGFALS 3483 broad.mit.edu 37 16 1840814 1840814 + Silent SNP A A C novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . IGFALS NM_001146006 exon2 c.T1719G p.G573G GGGGTTACCCTCC 56 13 0.23 52 8 0.1538461538 29 2 0 0.00 MT3 4504 bcgsc.ca 37 16 56623785 56623785 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . MT3 NM_005954 exon2 c.G35T p.G12V TAGGTGGCTCCTG 146 6 0.04 56 0 0 6 1 0 0.00 CMTM2 146225 broad.mit.edu 37 16 66613759 66613759 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . CMTM2 NM_001199317 exon1 c.G249T p.W83C GTTCTGGCTCTTG 228 4 0.02 82 0 0 33 1 0 0.00 LOC283922 0 broad.mit.edu 37 16 74372644 74372644 + RNA SNP A A G rs2549260 bycluster TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . CTTGTCAGGGGGA 79 4 0.05 114 2 0.0175438596 5 0 0.00 PKD1L2 114780 broad.mit.edu 37 16 81188170 81188170 + RNA DEL T T - novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . PKD1L2 . . . . TCTTCCTTTTTTT 9 5 0.56 6 0 0 361 0 0 NCOR1 9611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 15973655 15973655 + Missense_Mutation SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001190440 exon30 c.C4385T p.S1462F TGCCGGGAACGCA 186 63 0.34 184 0 0 54 21 0.39 . 0 broad.mit.edu 37 17 16832430 16832430 + RNA DEL C C - novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . CCCCCACCCCCAA 6 2 0.33 4 0 0 0 0 MED1 5469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37571338 37571338 + Silent SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_004774 exon16 c.C1440T p.Y480Y CCCTTTGTAGAGT 198 57 0.29 165 0 0 25 13 0.52 CNP 1267 mdanderson.org 37 17 40125905 40125905 + Missense_Mutation SNP G G T rs372142717 alternate_allele TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_033133 exon4 c.G1229T p.R410L GTAGCCGGAAGGG 17 2 0.12 22 0 0 349 0 0.00 ITGA2B 3674 mdanderson.org 37 17 42463057 42463057 + Missense_Mutation SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_000419 exon4 c.G436A p.V146I CTAGGACGTTCCA 41 3 0.07 40 0 0 0 0 SETBP1 26040 mdanderson.org 37 18 42529989 42529989 + Silent SNP C C T rs149073567 bycluster;byfrequency;by1000genomes TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 SETBP1,NS,carcinoma,0,1 SETBP1 NM_015559 exon4 c.C684T p.S228S TGACAGCGGACCC 50 3 0.06 80 0 0 0 0 1 13 0 0.00 SALL3 27164 mdanderson.org 37 18 76753274 76753274 + Missense_Mutation SNP T T C novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_171999 exon2 c.T1283C p.V428A CCAAGGTCTTCGG 22 2 0.09 39 0 0 4 0 0.00 ATP9B 374868 broad.mit.edu 37 18 77013493 77013493 + Missense_Mutation SNP G G A rs371121796 TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . ATP9B NM_198531 exon12 c.G1220A p.R407H GGTACCGCAATCT 181 4 0.02 172 0 0 96 13 0 0.00 FAM108A1 81926 mdanderson.org 37 19 1877409 1877409 + Silent SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_031213 exon6 c.C876A p.S292S GATCTTGGACACC 32 3 0.09 17 0 0 133 0 0.00 TMED1 11018 mdanderson.org 37 19 10946841 10946841 + Silent SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_006858 exon1 c.C27A p.A9A GGCCAGGGCTAGG 53 3 0.06 32 0 0 88 0 0.00 PRKCSH 5589 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 11558370 11558370 + Silent SNP G G A rs77563879 bycluster TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 PRKCSH,caecum,carcinoma,0,1 PRKCSH NM_001001329 exon11 c.G966A p.E322E GGAGGAGGAAGAA 81 6 0.07 67 0 0 0 1 55 0 0.00 MAN2B1 4125 mdanderson.org 37 19 12774209 12774209 + Silent SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_000528 exon6 c.G831A p.P277P CACCAGCGGCTGA 89 4 0.04 80 0 0 227 0 0.00 ZNF676 163223 ucsc.edu 37 19 22363172 22363172 + Silent SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . ZNF676 NM_001001411 exon3 c.C1347T p.Y449Y ACATTTGTAGGGT 85 6 0.07 64 2 0.03125 146 24 5 0.21 RHPN2 85415 mdanderson.org 37 19 33517427 33517427 + Silent SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_033103 exon3 c.C297T p.G99G ATAGACGCCCACC 24 4 0.17 35 0 0 22 0 0.00 HRC 3270 hgsc.bcm.edu 37 19 49657886 49657886 + Silent SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_002152 exon1 c.G609A p.E203E GGCCTCCTCTTCC 90 9 0.10 61 0 0 5 2 0.40 HRC 3270 hgsc.bcm.edu 37 19 49657916 49657916 + Silent SNP T T C rs7409255 TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_002152 exon1 c.A579G p.E193E CTCCTCTTCTCCT 94 8 0.09 68 0 0 5 0 0.00 ZNF525 170958 broad.mit.edu 37 19 53879043 53879043 + Silent SNP T T C rs62115350 TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . ZNF525 . . . . CAGGGATGTGGCC 60 6 0.10 53 1 0.0188679245 35 5 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89100923 89100924 + RNA INS - - G rs369765448 bycluster TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . TAAAAAAGATACA 9 4 0.44 4 0 0 0 0 WASH2P 0 broad.mit.edu 37 2 114353290 114353290 + RNA SNP T T C rs11267060 TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . CTTTCCTGTGTGC 90 11 0.12 52 1 0.0192307692 66 14 0.21 COL3A1 1281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 189868987 189868987 + Missense_Mutation SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_000090 exon40 c.C2828T p.A943V AGGGAGCTCCAGG 274 98 0.36 289 0 0 12397 6202 0.50 ANKZF1 55139 bcgsc.ca;mdanderson.org 37 2 220101121 220101121 + Missense_Mutation SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . ANKZF1 NM_001042410 exon14 c.G2135A p.R712H CCACACGTTGCCT 80 5 0.06 113 0 0 45 79 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29623215 29623215 + Missense_Mutation SNP G G A rs77485836 bycluster TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . FRG1B . . . . GCACTCGACAATG 387 37 0.10 416 21 0.0504807692 181 226 49 0.22 BAGE 85319 broad.mit.edu 37 21 11058613 11058614 + RNA INS - - A rs377480117 bycluster TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . TTTTTTTAAAGCA 7 3 0.43 11 0 0 0 0 KRTAP10-10 353333 mdanderson.org 37 21 46058034 46058034 + Missense_Mutation SNP G G A rs1785472 by2hit2allele TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_181688 exon1 c.G700A p.V234M CGCCCCGTGTGCT 88 4 0.05 67 1 0.0149253731 0 0 TRMU 55687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 46749663 46749663 + Splice_Site SNP G G C novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_018006 exon8 c.773-1G>C . TCTGTAGGTTGGT 319 91 0.29 228 0 0 7 2 0.29 SH3BP5 9467 mdanderson.org 37 3 15373825 15373825 + Missense_Mutation SNP T T C novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_004844 exon1 c.A91G p.M31V GCTCCATCCCCTC 25 3 0.12 21 1 0.0476190476 20 0 0.00 CLASP2 23122 mdanderson.org 37 3 33759452 33759452 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_015097 exon1 c.C43A p.Q15K CCTTCTGCTGCAC 14 3 0.21 16 0 0 4 0 0.00 EPM2AIP1 9852 mdanderson.org 37 3 37034360 37034360 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 EPM2AIP1,NS,carcinoma,+1,1 EPM2AIP1 NM_014805 exon1 c.C209A p.A70E CCGTCCGCCACAT 36 3 0.08 41 0 0 1 1 14 0 0.00 XYLB 9942 mdanderson.org 37 3 38404464 38404464 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_005108 exon4 c.G247T p.G83C GCTTCGGGCTTCG 42 3 0.07 59 0 0 6 0 0.00 WDR6 11180 broad.mit.edu 37 3 49050774 49050774 + Missense_Mutation SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . WDR6 NM_018031 exon2 c.C1897T p.P633S CTCCAGCCAGTCC 70 3 0.04 79 0 0 79 170 0 0.00 FNDC3B 64778 hgsc.bcm.edu;broad.mit.edu 37 3 172065071 172065071 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001135095 exon21 c.G2434T p.E812X TCCTTAGAACTCA 90 5 0.06 87 0 0 32 0 0.00 MUC4 4585 bcgsc.ca 37 3 195509585 195509585 + Missense_Mutation SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . MUC4 NM_018406 exon2 c.G8866A p.G2956S CGTGACCTGTGGA 47 15 0.32 56 3 0.0535714286 1505 0 0 MUC4 4585 bcgsc.ca 37 3 195510046 195510046 + Missense_Mutation SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . MUC4 NM_018406 exon2 c.C8405T p.P2802L GTGACAGGAAGAG 23 7 0.30 82 1 0.012195122 1505 0 0 GABRB1 2560 mdanderson.org 37 4 47163290 47163290 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_000812 exon4 c.C265T p.Q89X TATTTCCAGCAGT 37 3 0.08 44 1 0.0227272727 0 0 . 0 broad.mit.edu 37 4 68311853 68311855 + RNA DEL GAG GAG - novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . TATGGCGAGGAGG 6 2 0.33 8 0 0 3 0 0.00 SLCO4C1 353189 broad.mit.edu 37 5 101599428 101599428 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . SLCO4C1 NM_180991 exon4 c.C859A p.Q287K GCAGTTGTCCTCC 265 6 0.02 370 0 0 113 4 0 0.00 SLC12A2 6558 mdanderson.org 37 5 127485691 127485691 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_001046 exon13 c.G2008T p.E670X GCAGCTGAACTGA 52 4 0.08 44 1 0.0227272727 23 0 0.00 FARS2 10667 broad.mit.edu 37 6 5404837 5404837 + Silent SNP G G T rs370034437 alternate_allele TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 FARS2,colon,carcinoma,+1,2 FARS2 NM_006567 exon3 c.G675T p.A225A CTCTGCGCATAAA 222 4 0.02 173 0 0 33 2 52 0 0.00 TAAR2 9287 hgsc.bcm.edu;bcgsc.ca 37 6 132945356 132945356 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . TAAR2 NM_001033080 exon1 c.60delG p.K20fs CCTACCTTTTTTG 110 34 0.31 119 0 0 45 0 0 CCT6P1 0 broad.mit.edu 37 7 65226641 65226641 + RNA SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . TCTTGCGCAGAAT 151 5 0.03 115 0 0 18 0 0.00 CLIP2 7461 broad.mit.edu 37 7 73790841 73790842 + Frame_Shift_Ins INS - - G novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . CLIP2 NM_003388 exon10 c.2110_2111insG p.R704fs CACTGGCGGGCCC 96 6 0.06 101 0 0 134 41 0 0.00 PRRT4 401399 ucsc.edu 37 7 127991185 127991185 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . PRRT4 NM_001174164 exon6 c.C2425A p.L809I GCGAGAGTCCGCA 39 4 0.10 32 0 0 31 17 0 0.00 MGAM 8972 broad.mit.edu;mdanderson.org 37 7 141765179 141765179 + Missense_Mutation SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . MGAM NM_004668 exon38 c.G4529A p.R1510H TCACCCGCTCCAC 135 5 0.04 113 0 0 767 2 0 0.00 NOBOX 135935 mdanderson.org 37 7 144098624 144098624 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 NOBOX,NS,carcinoma,0,2 NOBOX NM_001080413 exon4 c.C359A p.A120D TGAGGGGCTGAGC 43 3 0.07 33 0 0 0 2 0 0 DPP6 1804 mdanderson.org 37 7 154598822 154598822 + Missense_Mutation SNP G G T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_130797 exon16 c.G1666T p.G556C TGCGAAGGTCAGC 47 3 0.06 47 0 0 8 0 0.00 PAXIP1 22976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 154738434 154738434 + Silent SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . NM_007349 exon18 c.C3012T p.S1004S CTGCTTGGATAAC 153 35 0.23 168 0 0 109 33 0.30 SCARA5 286133 mdanderson.org 37 8 27779326 27779326 + Silent SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 SCARA5,NS,carcinoma,-2,1 SCARA5 NM_173833 exon4 c.G678A p.V226V GCGCAGCACGCCG 36 3 0.08 23 0 0 -2 1 38 0 0.00 KANK1 23189 broad.mit.edu 37 9 732477 732477 + Silent SNP G G A novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 KANK1_ENST00000382303,NS,carcinoma,0,4 KANK1 NM_001256876 exon10 c.G3105A p.E1035E AGAAGAGGAGGAG 136 5 0.04 115 1 0.0086956522 231 4 53 0 0.00 SPTAN1 6709 broad.mit.edu 37 9 131343226 131343226 + Missense_Mutation SNP C C T rs374524469 TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . SPTAN1 NM_003127 exon11 c.C1349T p.A450V AGAGAGCGGCGCT 102 4 0.04 100 0 0 266 128 0 0.00 . 0 broad.mit.edu 37 X 155255248 155255248 + RNA SNP C C T rs71259952 TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . GGGGGACGGCTCC 14 5 0.36 9 0 0 17 0 0.00 MAPK8IP2 23542 mdanderson.org 37 22 51044145 51044145 + Missense_Mutation SNP C C T novel TCGA-2G-AAH2-01A-11D-A42Y-10 TCGA-2G-AAH2-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3505fa2-6cd0-48bd-8f11-64c72826ca4d a86f171b-80a2-45db-b232-a1b53d59d095 . . . . . . CCGGCCCTGCCAA 45 3 0.07 40 0 0 10 0 0.00