Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CCNL2 81669 broad.mit.edu 37 1 1334663 1334664 + In_Frame_Ins INS - - GCCGCC novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 CCNL2,brain,glioma,-2,1 CCNL2 NM_030937 exon1 c.24_25insGGCGGC p.A8delinsAAA AGCACCAGCCGCC 31 7 0.23 24 0 0 54 1 6 0 0.00 NPHP4 261734 broad.mit.edu;mdanderson.org 37 1 5935039 5935039 + Missense_Mutation SNP G G A rs199645515 TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . NPHP4 NM_015102 exon21 c.C2939T p.T980M TGGAGCGTGTGCT 63 5 0.08 36 0 0 119 26 0 0.00 TMEM51-AS1 200197 hgsc.bcm.edu 37 1 15439099 15439099 + RNA SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . TTTCTCCTCCCGG 139 7 0.05 75 0 0 2 0 0.00 AUNIP 79000 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 26162011 26162013 + In_Frame_Del DEL AAG AAG - novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 AAG AAG Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . AUNIP NM_024037 exon3 c.546_548del p.182_183del GCAAACAAGAACT 188 47 0.25 178 0 0 1 19 0 0.00 GMEB1 10691 broad.mit.edu 37 1 29018151 29018151 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . GMEB1 NM_006582 exon4 c.G296T p.C99F TAACTTGTGGGGA 90 3 0.03 102 1 0.0098039216 28 11 0 0.00 GRIK3 2899 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 37325605 37325605 + Missense_Mutation SNP A A G novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . GRIK3 NM_000831 exon6 c.T800C p.L267S AGGTCTAAAGCGT 123 43 0.35 93 1 0.0107526882 195 6 3 0.50 SPTA1 6708 mdanderson.org 37 1 158609464 158609464 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_003126 exon35 c.C4888A p.L1630M TGGCCAGCAATGT 113 5 0.04 118 0 0 1 0 0.00 . 100616345 bcgsc.ca 37 1 192685532 192685532 + RNA SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . AGACTTCGTGGTG 13 9 0.69 16 0 0 1229 1 0.00 FMN2 56776 broad.mit.edu 37 1 240371517 240371517 + Silent SNP T T A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 FMN2,NS,carcinoma,+2,1 FMN2 NM_020066 exon5 c.T3405A p.L1135L CCCTCTTCCCGGA 73 6 0.08 63 3 0.0476190476 451 1 0 0 ADSS 159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 244601040 244601040 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001126 exon2 c.G214A p.V72M AATCCACAACAAC 86 32 0.37 116 0 0 72 17 0.24 DLG5 9231 mdanderson.org 37 10 79577631 79577631 + Missense_Mutation SNP G G T rs147253082 alternate_allele TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_004747 exon18 c.C3688A p.R1230S TCAGGCGTCCCTG 51 3 0.06 40 0 0 74 0 0.00 MYOF 26509 mdanderson.org 37 10 95123740 95123740 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_013451 exon27 c.C2846A p.A949D TCCTCGGCCGGCT 50 3 0.06 57 0 0 100 0 0.00 MMS19 64210 broad.mit.edu 37 10 99221310 99221310 + Missense_Mutation SNP A A G novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . MMS19 NM_022362 exon23 c.T2254C p.F752L AAGAAAAGGGGCA 141 3 0.02 153 0 0 36 90 0 0.00 MUC2 4583 mdanderson.org 37 11 1092961 1092961 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_002457 exon30 c.C4780T p.P1594S GTGACCCCAACCC 29 2 0.07 24 0 0 11 0 0.00 MYBPC3 4607 mdanderson.org 37 11 47365120 47365120 + Silent SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_000256 exon13 c.G1146A p.R382R GGTCAGCCGGATC 46 3 0.07 70 0 0 0 0 TRIM51HP 440041 hgsc.bcm.edu 37 11 55063245 55063245 + RNA SNP A A C novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . TTCTGAAAACCCA 26 11 0.42 40 0 0 0 0 MRPL16 54948 mdanderson.org 37 11 59577352 59577352 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 MRPL16,NS,carcinoma,0,1 MRPL16 NM_017840 exon2 c.C97A p.L33M GGAGCAGTGTCTT 45 3 0.07 67 1 0.0149253731 0 1 109 0 0.00 CAPN5 726 mdanderson.org 37 11 76831772 76831772 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_004055 exon10 c.G1304T p.R435L AGAACCGCCAGTA 32 3 0.09 45 0 0 20 0 0.00 CADM1 23705 hgsc.bcm.edu 37 11 115080343 115080343 + Silent SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 CADM1,NS,carcinoma,0,6 CADM1 NM_014333 exon8 c.C1029A p.T343T GGTGGTGGTTGTT 53 5 0.09 42 0 0 0 6 30 1 0.03 NFRKB 4798 mdanderson.org 37 11 129740083 129740083 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_006165 exon22 c.G2912A p.R971H TGGATGCGGAAGT 77 4 0.05 145 0 0 14 0 0.00 WNT5B 81029 mdanderson.org 37 12 1755104 1755104 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 WNT5B_ENST00000397196,NS,carcinoma,-2,1 WNT5B_ENST00000397196 NM_030775 exon5 c.C766T p.R256C GCCATGCGCGTCA 55 3 0.05 29 0 0 -2 1 59 0 0.00 KIAA1551 55196 hgsc.bcm.edu;broad.mit.edu 37 12 32137715 32137715 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 C12orf35,colon,carcinoma,0,1 C12orf35 NM_018169 exon4 c.G3826T p.A1276S TTAGTTGCTGGTC 144 6 0.04 67 1 0.0149253731 0 1 92 0 0.00 RAB21 23011 mdanderson.org 37 12 72148936 72148936 + Silent SNP C C G novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_014999 exon1 c.C27G p.G9G CGGCGGCGGGGCG 16 2 0.13 10 0 0 2 0 0.00 MLXIP 22877 mdanderson.org 37 12 122612481 122612481 + Missense_Mutation SNP G G A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 MLXIP,NS,carcinoma,+1,1 MLXIP NM_014938 exon3 c.G572A p.G191D TGGACGGCTCTGT 50 3 0.06 41 0 0 1 1 80 0 0.00 PABPC3 5042 bcgsc.ca 37 13 25671311 25671315 + Frame_Shift_Del DEL TATGA TATGA - novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 TATGA TATGA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . PABPC3 NM_030979 exon1 c.975_979del p.325_327del AAAGGTTATGATG 198 5 0.03 237 1 0.0042194093 129 17 0 0.00 ATP11A 23250 ucsc.edu;bcgsc.ca 37 13 113508740 113508740 + Silent SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . ATP11A NM_032189 exon19 c.G2139T p.L713L GGAGCTGACCACC 34 4 0.12 54 0 0 225 29 0 0.00 ACIN1 22985 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 23530737 23530737 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_014977 exon17 c.C3368A p.P1123H ACCGGGGGTGGGG 79 11 0.14 71 0 0 128 49 0.38 TP53BP1 7158 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 43712824 43712833 + Frame_Shift_Del DEL GTCTGGTGGA GTCTGGTGGA - novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 GTCTGGTGGA GTCTGGTGGA Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . TP53BP1 NM_001141980 exon21 c.4352_4361del p.1451_1454del CTGTTCGTCTGGT 54 11 0.20 55 0 0 157 66 0 0.00 CILP 8483 mdanderson.org 37 15 65499312 65499312 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 CILP,NS,carcinoma,+2,1 CILP NM_003613 exon4 c.C232A p.R78S AGAAGCGAATGGC 72 4 0.06 76 0 0 2 1 2 0 0.00 VASN 114990 broad.mit.edu 37 16 4432543 4432543 + Silent SNP A A C novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . VASN NM_138440 exon2 c.A1665C p.T555T CCATACACCCCCA 61 11 0.18 44 7 0.1590909091 21 84 1 0.01 ANKS3 124401 mdanderson.org 37 16 4751543 4751543 + Missense_Mutation SNP C C A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_133450 exon10 c.G1011T p.E337D ATGTTCCTCTGAG 31 3 0.10 36 0 0 37 0 0.00 . 0 bcgsc.ca 37 16 20605255 20605255 + RNA SNP C C T rs201994972 TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . CAGTGCCTCAGGC 55 11 0.20 68 2 0.0294117647 0 0 RRN3P2 0 broad.mit.edu 37 16 29110438 29110438 + RNA SNP T T C novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . AGTATCTTCAGAG 492 6 0.01 407 1 0.0024570025 6 0 0.00 INO80E 283899 bcgsc.ca 37 16 30016646 30016652 + Frame_Shift_Del DEL TAAGATG TAAGATG - novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 TAAGATG TAAGATG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . INO80E NM_173618 exon7 c.618_624del p.206_208del ACCCCCTAAGATG 167 0 0.00 180 0 0 26 42 0 0.00 IRX6 79190 mdanderson.org 37 16 55362814 55362814 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_024335 exon5 c.G924T p.E308D CAGGGAGTGCGGC 50 3 0.06 37 0 0 2 0 0.00 CNGB1 1258 mdanderson.org 37 16 57993941 57993941 + Silent SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001135639 exon10 c.G612A p.G204G CTTGGGCCCCATT 35 3 0.09 33 0 0 0 0 CDRT15 146822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 14139304 14139304 + Silent SNP T T G novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001007530 exon3 c.A436C p.R146R CCAGCCTTCTTTT 398 64 0.16 322 0 0 1 0 0.00 KCNJ18 100134444 mdanderson.org 37 17 21318669 21318669 + Silent SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001194958 exon3 c.C15T p.S5S GGCCAGCCGGGCC 44 3 0.07 50 0 0 3 0 0.00 KRTAP9-1 728318 mdanderson.org 37 17 39346876 39346876 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001190460 exon1 c.G738T p.Q246H CTGCCAGCCTTCC 56 3 0.05 46 0 0 0 0 . 342705 bcgsc.ca 37 18 29543378 29543378 + RNA SNP G G A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . GTCCAGGCTGGCA 28 4 0.14 66 0 0 2 0 0.00 FBN3 84467 broad.mit.edu 37 19 8183824 8183824 + Silent SNP A A G novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 FBN3,rectum,carcinoma,0,1 FBN3 NM_032447 exon25 c.T3294C p.C1098C AGGGGGACACTGG 125 4 0.03 82 0 0 300 1 62 0 0.00 MAG 4099 broad.mit.edu 37 19 35791134 35791134 + Missense_Mutation SNP A A C novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . MAG NM_080600 exon6 c.A797C p.N266T ACAGCAACCCCCC 17 4 0.24 18 4 0.2222222222 172 0 0 DMWD 1762 mdanderson.org 37 19 46287506 46287506 + Missense_Mutation SNP C C A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_004943 exon5 c.G2020T p.V674L TTCACACCACTGT 16 3 0.19 29 0 0 45 0 0.00 TPRX1 284355 broad.mit.edu 37 19 48305670 48305670 + Missense_Mutation SNP A A G rs201483839 bycluster TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 TPRX1,NS,carcinoma,0,3 TPRX1 NM_198479 exon2 c.T598C p.S200P GGACTGAGATTGG 35 5 0.14 48 3 0.0625 46 3 0 0 KLK14 43847 broad.mit.edu 37 19 51582886 51582886 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . KLK14 NM_022046 exon5 c.C334A p.R112S CCTGACGAACCAC 67 3 0.04 47 0 0 49 1 0 0.00 FBXO41 150726 mdanderson.org 37 2 73496315 73496315 + Silent SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001080410 exon1 c.C444A p.R148R GATCTCGCGCAGC 22 2 0.09 19 0 0 1 0 0.00 . 400986 broad.mit.edu 37 2 96646519 96646519 + Missense_Mutation SNP T T A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 ENSG00000174501,NS,carcinoma,0,2 . . . . . ACAGCATGTATGA 211 6 0.03 234 0 0 2 3 0 0.00 SEPT10 151011 broad.mit.edu 37 2 110301827 110301828 + Frame_Shift_Ins INS - - T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . SEPT10 . . . . CTTCTAGTTTTTT 44 7 0.16 52 0 0 58 94 0 0.00 CSNK2A1 1457 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 485847 485847 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001895 exon3 c.G128A p.R43Q AATTTTCGAACCA 237 106 0.45 342 0 0 12 6 0.50 TMX4 56255 broad.mit.edu 37 20 8000252 8000252 + Silent SNP A A C novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . TMX4 NM_021156 exon1 c.T9G p.G3G GCGCCCACCCGCC 36 18 0.50 26 9 0.3461538462 39 1 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29623182 29623182 + Missense_Mutation SNP G G A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . FRG1B . . . . GCCATTGAAATGG 388 21 0.05 433 17 0.03926097 181 202 3 0.01 RBBP8NL 0 ucsc.edu;bcgsc.ca 37 20 60988586 60988586 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_080833 exon11 c.C1546A p.L516I CTGGAAGTGGGCG 36 4 0.11 33 1 0.0303030303 9 0 0.00 ZNRF3 84133 mdanderson.org 37 22 29446361 29446361 + Missense_Mutation SNP G G A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001206998 exon8 c.G2192A p.S731N GCAGCAGCACCTT 24 2 0.08 18 0 0 24 0 0.00 NEFH 4744 hgsc.bcm.edu 37 22 29885638 29885638 + Missense_Mutation SNP T T A rs190692435 bycluster TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 NEFH,NS,lymphoid_neoplasm,0,1 NEFH NM_021076 exon4 c.T2009A p.V670E CCCCAGTGAAGGC 231 11 0.05 185 2 0.0108108108 0 1 80 3 0.04 SNRK 54861 mdanderson.org 37 3 43345230 43345230 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_017719 exon3 c.G535T p.A179S TCTCTTGCATATT 140 5 0.04 137 1 0.0072992701 39 0 0.00 CDHR4 389118 mdanderson.org 37 3 49830732 49830732 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001007540 exon13 c.C1636A p.H546N GGGCATGGTCATT 44 3 0.07 33 0 0 11 0 0.00 MUC4 4585 mdanderson.org 37 3 195511763 195511763 + Missense_Mutation SNP T T C novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_018406 exon2 c.A6688G p.T2230A AGGAAGTGTCGGT 206 10 0.05 188 1 0.0053191489 3 0 0.00 UGT2A3 79799 mdanderson.org 37 4 69817391 69817391 + Missense_Mutation SNP G G A novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_024743 exon1 c.C88T p.P30S CACAGGGCCACAC 51 3 0.06 38 0 0 5 0 0.00 . 0 broad.mit.edu 37 4 159199303 159199305 + RNA DEL GAA GAA - novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 GAA GAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . GAATTTGAAGAAG 222 8 0.04 242 0 0 0 0 NSD1 64324 mdanderson.org 37 5 176721079 176721079 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_022455 exon23 c.C6710T p.A2237V ACCTGGCAGAGCA 46 3 0.07 69 0 0 62 0 0.00 PRR7 80758 mdanderson.org 37 5 176882733 176882733 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_001174102 exon3 c.G436T p.D146Y GAATCGGACATGT 45 3 0.07 52 0 0 11 0 0.00 UNC5CL 222643 mdanderson.org 37 6 41002533 41002533 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 UNC5CL,colon,carcinoma,-1,1 UNC5CL NM_173561 exon2 c.G281A p.R94H AACTGGCGGACCA 39 3 0.08 29 0 0 -1 1 3 0 0.00 ABCC10 89845 broad.mit.edu 37 6 43403589 43403589 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 ABCC10,NS,carcinoma,0,2 ABCC10 NM_001198934 exon5 c.G1709T p.R570L TGGACCGGATCCA 546 6 0.01 459 0 0 118 2 28 0 0.00 NHSL1 57224 mdanderson.org 37 6 138745565 138745565 + Missense_Mutation SNP A A G novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_020464 exon7 c.T4486C p.F1496L CGGAAAAGGACAG 63 3 0.05 67 0 0 20 0 0.00 SSPO 23145 mdanderson.org 37 7 149499203 149499203 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_198455 exon51 c.G7571T p.R2524L TCCAGCGCCAGGA 15 3 0.20 10 0 0 0 0 PHYHIP 9796 broad.mit.edu 37 8 22079280 22079280 + Silent SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . PHYHIP NM_014759 exon5 c.C579A p.G193G GGGCTGGCCCGTG 162 11 0.07 97 0 0 24 13 1 0.08 SORBS3 10174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 22424177 22424177 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_005775 exon14 c.C1094T p.P365L CAGACCCTAGTGC 179 46 0.26 113 0 0 441 95 0.22 BAI1 575 mdanderson.org 37 8 143603471 143603471 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 BAI1,NS,carcinoma,-1,1 BAI1 NM_001702 exon20 c.G3170T p.G1057V GCCTGGGCTGGGG 36 3 0.08 19 0 0 -1 1 8 0 0.00 ZNF7 7553 hgsc.bcm.edu 37 8 146067136 146067136 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_003416 exon5 c.G644T p.W215L TGCATTGGGAAAT 100 4 0.04 51 0 0 68 0 0.00 . 392335 bcgsc.ca 37 9 66514131 66514131 + RNA SNP C C A rs200577194 TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . GAAGAACAGGTAA 58 9 0.16 48 1 0.0208333333 0 0 ZNF189 7743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 104171915 104171915 + Missense_Mutation SNP C C G rs200682925 alternate_allele TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 ZNF189,NS,carcinoma,0,1 ZNF189 NM_003452 exon3 c.C1865G p.T622R TGCACACAGCATG 60 24 0.40 76 0 0 0 1 42 21 0.50 CRB2 286204 mdanderson.org 37 9 126133061 126133061 + Missense_Mutation SNP G G T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_173689 exon7 c.G1729T p.A577S ACCTTTGCAGGCT 14 2 0.14 23 0 0 2 0 0.00 NACC2 138151 mdanderson.org 37 9 138903726 138903726 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 NACC2,colon,carcinoma,-1,1 NACC2 NM_144653 exon6 c.G1400A p.R467H ACCGTGCGGTACA 13 2 0.15 17 0 0 -1 1 30 0 0.00 SNAPC4 6621 mdanderson.org 37 9 139286450 139286450 + Missense_Mutation SNP C C T novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . NM_003086 exon9 c.G919A p.A307T CGATCGCCTGCAG 40 3 0.08 61 0 0 26 0 0.00 CA5BP1 0 broad.mit.edu 37 X 15715612 15715614 + RNA DEL CTC CTC - novel TCGA-2G-AAGX-01A-11D-A42Y-10 TCGA-2G-AAGX-10A-01D-A433-10 CTC CTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee49b449-611e-4175-a114-1034657b6be6 e937a8a8-262b-4b40-8505-ac1c9162f5e4 . . . . . . CTGGAGCTCCTCT 31 15 0.48 18 0 0 11 0 0.00