Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PTCHD2 57540 mdanderson.org 37 1 11586864 11586864 + Missense_Mutation SNP G G A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_020780 exon13 c.G2770A p.V924M TTCTACGTGGCCA 31 3 0.10 33 0 0 9 0 0.00 ESPNP 0 broad.mit.edu 37 1 17030903 17030905 + RNA DEL GAG GAG - rs55663095 alternate_allele TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . ATCGACGAGGAGG 7 5 0.71 11 0 0 0 0 PI4KB 5298 mdanderson.org 37 1 151288391 151288391 + Missense_Mutation SNP A A T rs1752379 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_002651 exon3 c.T603A p.D201E ACCCACATCCTCA 99 3 0.03 73 0 0 51 0 0.00 . 474337 bcgsc.ca 37 1 168867522 168867522 + RNA SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . AAGAATCATACTG 75 6 0.08 39 0 0 0 0 FAM5B 0 broad.mit.edu 37 1 177247722 177247722 + Missense_Mutation SNP A A G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . FAM5B NM_021165 exon7 c.A1036G p.R346G CTGAAAAGGCTGC 265 5 0.02 172 1 0.0058139535 191 0 0 PHLDA3 23612 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 201437676 201437676 + Frame_Shift_Del DEL C C - novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 PHLDA3,colon,carcinoma,0,1 PHLDA3 NM_012396 exon1 c.240delC p.G80fs TCGCCGCCCCCTT 241 71 0.29 289 0 0 11 290 0 0.00 ERO1LB 56605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 236389708 236389708 + Missense_Mutation SNP A A C novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_019891 exon12 c.T913G p.F305V ATAAAAAGTAAAG 226 70 0.31 164 0 0 5 1 0.20 EBF3 253738 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 131676058 131676058 + Missense_Mutation SNP T T G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001005463 exon7 c.A610C p.N204H GAGGGTTGCCTGC 72 6 0.08 46 0 0 27 1 0.04 MUC2 4583 mdanderson.org 37 11 1092971 1092971 + Missense_Mutation SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 MUC2_ENST00000441003,NS,carcinoma,0,1 MUC2_ENST00000441003 NM_002457 exon30 c.C4790T p.T1597I CCCCAACACCCAC 27 3 0.11 40 0 0 0 1 0 0 CDKN1C 1028 mdanderson.org 37 11 2906574 2906574 + Missense_Mutation SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_000076 exon1 c.G146A p.R49H GCCAGGCGGGCCT 24 2 0.08 46 0 0 51 0 0.00 TTC17 55761 ucsc.edu 37 11 43465665 43465665 + Silent SNP G G A rs377088555 alternate_allele TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . TTC17 NM_018259 exon18 c.G2571A p.G857G TCCTGGGAAAAAA 151 1 0.01 167 0 0 112 63 8 0.13 FADS1 3992 mdanderson.org 37 11 61584183 61584183 + Silent SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 FADS1,brain,glioma,0,1 FADS1 NM_013402 exon1 c.C219A p.T73T GCGCGGGGTAGGT 42 3 0.07 88 0 0 0 1 11 0 0.00 . 0 bcgsc.ca 37 11 62815368 62815368 + RNA SNP G G A rs7125680 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . GGTGCAGCATGCC 28 5 0.18 25 0 0 0 0 DPP3 10072 mdanderson.org 37 11 66276689 66276689 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_005700 exon18 c.G2181T p.K727N CTGGAAGGGCCCC 56 3 0.05 61 0 0 108 0 0.00 TMPRSS13 84000 mdanderson.org 37 11 117780545 117780545 + Missense_Mutation SNP A A G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001206790 exon8 c.T1085C p.L362P GCAGTGAGCACCC 25 3 0.12 57 0 0 5 0 0.00 ARHGEF12 23365 mdanderson.org 37 11 120347433 120347433 + Missense_Mutation SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_015313 exon34 c.C3341T p.A1114V TGGTGGCACAGAC 82 5 0.06 53 0 0 36 0 0.00 RBP5 0 broad.mit.edu 37 12 7281645 7281674 + RNA DEL TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC - novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . RBP5 . . . . TGGCTTTTCCTGA 12 5 0.42 6 0 0 20 2 0 0.00 GRIN2B 2904 broad.mit.edu 37 12 13717472 13717472 + Silent SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 GRIN2B,right_upper_lobe,carcinoma,-2,1 GRIN2B NM_000834 exon13 c.C2700A p.R900R CAGCAGGCGCAGG 136 4 0.03 95 0 0 303 1 0 0 RARG 5916 mdanderson.org 37 12 53609159 53609159 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_000966 exon5 c.C393A p.N131K GATACAGTTTTTG 110 5 0.05 114 1 0.0087719298 25 0 0.00 LRCOL1 100507055 broad.mit.edu 37 12 133182784 133182786 + RNA DEL CAG CAG - rs112975396 alternate_allele TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 CAG CAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001195520 exon2 c.52_54del p.18_18del GGACCCCAGCAGC 6 2 0.33 6 0 0 0 0 POSTN 10631 mdanderson.org 37 13 38145583 38145583 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_006475 exon18 c.C2102A p.T701K ACTTTTGTTAGTG 82 5 0.06 96 2 0.0208333333 207 0 0.00 . 0 broad.mit.edu 37 14 20086237 20086237 + RNA DEL T T - novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . TGTGTGTGGGGGG 9 5 0.56 7 0 0 0 0 NF1P2 100419006 bcgsc.ca 37 15 22145400 22145401 + RNA DNP GC GC TT novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 GC GC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . ACACTGGCCAGAG 25 14 0.56 32 1 0.03125 0 0 HERC2P10 390561 hgsc.bcm.edu 37 15 31117040 31117040 + RNA SNP C C A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . AAATTACCAAATG 28 13 0.46 24 0 0 0 0 SQRDL 58472 mdanderson.org 37 15 45980603 45980603 + Splice_Site SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001271213 exon9 c.1116+1G>T . AAGAAGGTTTGTA 45 3 0.07 38 0 0 0 0 MYO5A 4644 hgsc.bcm.edu 37 15 52662553 52662553 + Missense_Mutation SNP T T C novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_000259 exon22 c.A2879G p.E960G TCAGTCTCAGAGT 95 4 0.04 101 0 0 10 0 0.00 ABCC6 368 ucsc.edu;bcgsc.ca 37 16 16251629 16251629 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . ABCC6 NM_001171 exon27 c.C3773A p.P1258H GGCCAGGGGGGCT 39 4 0.10 40 0 0 110 3 0 0.00 RLTPR 146206 mdanderson.org 37 16 67683413 67683413 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001013838 exon20 c.G1810T p.A604S CTCCGGGCCCTAG 18 2 0.11 30 0 0 14 0 0.00 RANBP10 57610 mdanderson.org 37 16 67763875 67763875 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_020850 exon8 c.C964A p.L322M GCTCCAGCAGCCC 46 3 0.07 57 0 0 32 0 0.00 LOC283922 0 broad.mit.edu 37 16 74372765 74372765 + RNA SNP T T C rs2549261 bycluster;byfrequency TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . TCCCAGTGGGGAA 107 7 0.07 79 1 0.0126582278 13 0 0.00 ANKFY1 51479 mdanderson.org 37 17 4071123 4071123 + Missense_Mutation SNP G G A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001257999 exon25 c.C3586T p.R1196W AAACCCGCACAGG 80 4 0.05 90 0 0 46 0 0.00 SENP3 26168 mdanderson.org 37 17 7466636 7466636 + Silent SNP G G A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_015670 exon2 c.G243A p.E81E AGAAGAGGAGGAG 123 5 0.04 123 0 0 127 0 0.00 CDRT15P1 0 broad.mit.edu 37 17 13928102 13928102 + RNA SNP C C A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . AGGTGGCCTGCAG 459 6 0.01 469 2 0.0042643923 1 0 0.00 RAB11FIP4 84440 mdanderson.org 37 17 29761077 29761077 + Silent SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_032932 exon3 c.G273T p.V91V GGATGTGCTGTCG 20 2 0.10 17 0 0 7 0 0.00 MED1 5469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37604156 37604156 + Missense_Mutation SNP C C G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_004774 exon2 c.G27C p.E9D TTCTGACTCTATG 121 40 0.33 58 0 0 28 10 0.36 AMZ2P1 0 broad.mit.edu 37 17 62968690 62968690 + RNA SNP A A G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . TTCCACAAGTCTC 108 4 0.04 66 0 0 57 0 0.00 UNC13D 201294 broad.mit.edu 37 17 73824882 73824882 + Missense_Mutation SNP T T G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . UNC13D NM_199242 exon31 c.A3137C p.Y1046S GCGGGGTACGTGA 36 8 0.22 51 5 0.0980392157 68 14 0 0.00 CBX4 8535 bcgsc.ca 37 17 77809480 77809481 + Frame_Shift_Ins INS - - CCGATATC novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . CBX4 NM_003655 exon4 c.211_212insGATATCGG p.K71fs CTCTCTTCCGATA 45 3 0.07 73 0 0 40 6 0 0.00 LAMA3 3909 mdanderson.org 37 18 21393036 21393036 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_198129 exon14 c.G1757T p.C586F GTGCTTGTGACCC 37 3 0.08 35 0 0 1 0 0.00 SERPINB8 5271 mdanderson.org 37 18 61649058 61649058 + Missense_Mutation SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 SERPINB8,NS,carcinoma,+1,1 SERPINB8 NM_198833 exon4 c.C410T p.A137V GGGTGGCAGAGAA 33 3 0.09 31 0 0 1 1 2 0 0.00 RTTN 25914 hgsc.bcm.edu 37 18 67755229 67755229 + Missense_Mutation SNP C C T rs75356692 bycluster;by1000genomes TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 RTTN,NS,carcinoma,-1,1 RTTN NM_173630 exon31 c.G4298A p.R1433Q ACCTCCCGGCGCA 71 3 0.04 79 0 0 0.001 -1 1 10 0 0.00 RFX1 5989 mdanderson.org 37 19 14073848 14073848 + Missense_Mutation SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_002918 exon20 c.G2728A p.A910T GATTGGCGAACTG 46 3 0.07 89 0 0 173 0 0.00 LPHN1 22859 mdanderson.org 37 19 14262420 14262420 + Silent SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001008701 exon24 c.C3690A p.P1230P TCCCAAGGGGTGC 20 2 0.10 30 0 0 96 0 0.00 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42796253 42796253 + Missense_Mutation SNP C C G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_015125 exon12 c.C2902G p.P968A CTGACCCCGGTGC 67 19 0.28 128 0 0 53 20 0.38 RASIP1 54922 mdanderson.org 37 19 49224143 49224143 + Missense_Mutation SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 RASIP1,NS,NS,0,1 RASIP1 NM_017805 exon12 c.G2804A p.R935H AGCCTACGGAGTT 47 3 0.06 74 0 0 0 1 35 0 0.00 SSC5D 284297 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56011494 56011494 + Missense_Mutation SNP T T C novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . SSC5D NM_001195267 exon10 c.T2017C p.S673P GAGGCCTCCCGAA 70 7 0.10 109 1 0.0091743119 65 8 3 0.38 LPIN1 23175 broad.mit.edu;mdanderson.org 37 2 11945257 11945257 + Missense_Mutation SNP G G A rs147550491 TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . LPIN1 NM_001261428 exon18 c.G2371A p.A791T GGCATCGCTAAGC 95 4 0.04 91 0 0 99 10 0 0.00 LHCGR 3973 broad.mit.edu 37 2 48982761 48982761 + Missense_Mutation SNP A A T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . LHCGR NM_000233 exon1 c.T50A p.L17Q GGCTGCAGCAGCA 27 3 0.11 31 0 0 154 0 0 SERPINE2 5270 mdanderson.org 37 2 224866576 224866576 + Silent SNP C C T rs12436 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 SERPINE2_ENST00000447280,NS,carcinoma,-1,2 SERPINE2_ENST00000447280 NM_001136530 exon2 c.G78A p.T26T AGGCAGCGTCACA 45 3 0.07 59 0 0 -1 2 279 0 0.00 NCOA6 23054 broad.mit.edu 37 20 33345759 33345759 + Silent SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 NCOA6,NS,carcinoma,0,1 NCOA6 NM_014071 exon7 c.G792A p.Q264Q TTGTTGCTGCTGC 91 3 0.03 70 0 0 219 1 12 0 0.00 PTGIS 5740 mdanderson.org 37 20 48166687 48166687 + Silent SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_000961 exon2 c.C114A p.P38P CAACCAGGGGATG 41 3 0.07 45 0 0 22 0 0.00 CTCFL 140690 broad.mit.edu 37 20 56094264 56094264 + Splice_Site SNP T T C novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . CTCFL NM_001269044 exon3 c.A924G p.T308T TTTACCTGTGTGG 161 2 0.01 135 0 0 97 0 0 GGT3P 0 broad.mit.edu 37 22 18769697 18769697 + RNA SNP A A G rs370008023 TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . TCCAGGACTGCCG 745 8 0.01 727 1 0.0013755158 3 0 0.00 DGKG 1608 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 185975651 185975651 + Missense_Mutation SNP T T C novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . DGKG NM_001346 exon17 c.A1502G p.D501G ATGCAATCCAAAA 137 50 0.36 121 2 0.0165289256 98 0 0 POLN 353497 mdanderson.org 37 4 2082736 2082736 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_181808 exon21 c.C2336A p.A779D ATCATGGCCAGCT 35 3 0.09 63 0 0 0 0 RGS12 6002 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3319740 3319740 + Missense_Mutation SNP C C T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . RGS12 NM_002926 exon2 c.C1843T p.P615S TTTGGTCCCCATC 199 48 0.24 257 1 0.0038910506 128 19 11 0.58 KLHL2 11275 mdanderson.org 37 4 166220781 166220781 + Silent SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_001161521 exon8 c.G906T p.R302R GACCCGGCTGAGG 40 3 0.08 45 0 0 11 0 0.00 TRAPPC11 60684 hgsc.bcm.edu;mdanderson.org 37 4 184589238 184589238 + Silent SNP G G A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 C4orf41,NS,carcinoma,0,1 C4orf41 NM_021942 exon5 c.G528A p.P176P ACTGCCGCACACT 100 5 0.05 78 1 0.0128205128 0 1 28 0 0.00 CCNO 10309 broad.mit.edu 37 5 54527462 54527462 + Missense_Mutation SNP A A C novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . CCNO NM_021147 exon3 c.T794G p.V265G TCTGCCACCCCCC 105 12 0.11 105 16 0.1523809524 17 9 1 0.11 TCERG1 10915 broad.mit.edu 37 5 145836872 145836872 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . TCERG1 NM_006706 exon3 c.G412T p.V138F ATATGGGTTGAAA 128 5 0.04 87 0 0 148 73 0 0.00 TUBB 203068 mdanderson.org 37 6 30691668 30691668 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 TUBB,NS,carcinoma,0,1 TUBB NM_178014 exon4 c.G829T p.G277X AGCCGTGGAAGCC 50 3 0.06 62 0 0 0 1 6607 5 0.00 INTS1 26173 broad.mit.edu 37 7 1527082 1527082 + Silent SNP C C G novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . INTS1 NM_001080453 exon20 c.G2520C p.G840G GGGGGGCCCCCTG 121 5 0.04 104 2 0.0192307692 145 126 2 0.02 FKBP14 55033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 30058694 30058696 + In_Frame_Del DEL AGG AGG - novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 AGG AGG Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . FKBP14 NM_017946 exon3 c.394_396del p.132_132del ATCTCCAGGAGAT 157 24 0.15 65 0 0 18 59 0 0.00 NCF1 653361 mdanderson.org 37 7 74202921 74202921 + Silent SNP G G A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_000265 exon10 c.G924A p.A308A CAACGCGCACAGC 35 3 0.09 57 0 0 4 0 0.00 CTTNBP2 83992 bcgsc.ca 37 7 117407171 117407171 + Silent SNP G G A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . CTTNBP2 NM_033427 exon9 c.C2838T p.C946C CCGATTGCACTTG 53 4 0.08 58 0 0 200 4 0 0.00 . 0 broad.mit.edu 37 7 128217802 128217803 + RNA INS - - GGGAGA rs139428807 bycluster;by1000genomes TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . GAGAAGGGGGAGA 7 3 0.43 4 0 0 0 0 MIR548T 100422849 hgsc.bcm.edu 37 7 148028714 148028714 + RNA SNP C C G rs62470610 TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . TGGAGTCGATGGA 8 5 0.63 11 0 0 0 0 CNTNAP2 26047 ucsc.edu 37 7 148112542 148112542 + Missense_Mutation SNP G G A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . CNTNAP2 NM_014141 exon24 c.G3830A p.C1277Y TCCTGTGCACCCT 31 4 0.13 53 0 0 392 20 0 0.00 TMEM176B 28959 ucsc.edu 37 7 150489162 150489162 + Silent SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . TMEM176B NM_014020 exon6 c.C702A p.G234G GCTCTGGCCACAC 37 4 0.11 62 0 0 36 60 0 0.00 ZFHX4 79776 broad.mit.edu 37 8 77617508 77617508 + Silent SNP G G A rs368515394 TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 ZFHX4,NS,carcinoma,0,2 ZFHX4 NM_024721 exon2 c.G1185A p.P395P GCAGCCGCTGGGG 111 3 0.03 76 2 0.0263157895 878 2 3 0 0.00 COL14A1 7373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 121220569 121220569 + Silent SNP T T C novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_021110 exon11 c.T1290C p.A430A CACTGCTAGTGAA 88 13 0.15 45 0 0 74 15 0.20 OPLAH 26873 broad.mit.edu 37 8 145108284 145108284 + Missense_Mutation SNP G G T rs186909122 by1000genomes;alternate_allele TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . OPLAH NM_017570 exon20 c.C2699A p.A900D CGCAGGGCCTCCG 89 6 0.07 74 1 0.0135135135 78 13 0 0.00 FAM120A 23196 mdanderson.org 37 9 96214208 96214208 + Missense_Mutation SNP A A T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_014612 exon1 c.A11T p.Q4L GCGTGCAGGGCTT 14 3 0.21 37 0 0 2 0 0.00 COL15A1 1306 bcgsc.ca 37 9 101798650 101798650 + Missense_Mutation SNP C C A novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . COL15A1 NM_001855 exon21 c.C2381A p.P794Q GAGGGCCACCTGG 55 4 0.07 103 0 0 211 67 0 0.00 TTC16 158248 mdanderson.org 37 9 130487072 130487072 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_144965 exon9 c.G1155T p.E385D TGCCGAGGCGGAC 45 3 0.07 91 0 0 0 0 FPGS 2356 mdanderson.org 37 9 130572100 130572100 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_004957 exon12 c.G1198T p.E400X GGCCGCGAGAGGC 9 2 0.22 19 0 0 12 0 0.00 SEC16A 9919 bcgsc.ca 37 9 139355646 139355646 + Silent SNP G G A rs375805476 TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . SEC16A NM_014866 exon13 c.C4974T p.H1658H TCGGGCGTGTGTC 59 4 0.07 99 0 0 249 57 0 0.00 FAM157B 0 broad.mit.edu 37 9 141124391 141124392 + RNA DEL TG TG - rs367820400 alternate_allele TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . . . . . GTGTTTTGTTTTT 91 13 0.14 47 0 0 0 0 G6PD 2539 mdanderson.org 37 X 153762708 153762708 + Silent SNP G G T rs80149725 bycluster TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_000402 exon6 c.C579A p.G193G GTTCCAGCCTCTG 30 3 0.10 41 0 0 207 1 0.00 ZFY 7544 mdanderson.org 37 Y 2829680 2829680 + Missense_Mutation SNP G G T novel TCGA-2G-AAGS-01A-11D-A42Y-10 TCGA-2G-AAGS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 316c085e-6dd0-48c8-abc3-1653d58f11e4 f7149d2b-099b-4a37-a78b-54186de35097 . . NM_003411 exon3 c.G627T p.M209I CCTAATGATTTCG 16 2 0.13 27 1 0.037037037 13 0 0.00