Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1273785	1273785	+	Silent	SNP	G	G	A	rs151161721		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_004421	exon13	c.C1296T	p.H432H	CTCCACGTGTGTG		83	12	0.14	47	0	0	0			203	41	0.20			
PRDM2	7799	broad.mit.edu	37	1	14105124	14105124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	PRDM2,caecum,carcinoma,0,2	PRDM2	NM_015866	exon8	c.A834T	p.E278D	GGATGAAGAAGAA		166	5	0.03	162	1	0.0061728395		147	2	10	0	0.00			
FOXE3	2301	broad.mit.edu	37	1	47882404	47882404	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	FOXE3	NM_012186	exon1	c.G417T	p.P139P	CAACCCGGGCAAG		149	5	0.03	175	0	0		8		1	0	0.00			
GBP1P1	0	broad.mit.edu	37	1	89888568	89888570	+	RNA	DEL	AGA	AGA	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	AGA	AGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	TCCTCTAGAAGAA		102	17	0.17	132	0	0				19	0	0.00			
SEMA6C	10500	bcgsc.ca	37	1	151110195	151110195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	SEMA6C	NM_001178061	exon10	c.C748A	p.L250M	TCCCCAGCCGAGC		131	6	0.05	90	0	0		70		11	0	0.00			
TCHH	7062	broad.mit.edu	37	1	152081419	152081419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	TCHH	NM_007113	exon3	c.G4274T	p.R1425L	TCTTGGCGGCTCA		150	6	0.04	135	0	0		275		0	0				
OR10J3	441911	broad.mit.edu	37	1	159284389	159284389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	OR10J3,right_upper_lobe,carcinoma,+1,1	OR10J3	NM_001004467	exon1	c.A61G	p.R21G	GCCGCCTGAAGCT		205	3	0.01	216	0	0		86	1	0	0				
IGSF9	57549	mdanderson.org	37	1	159901663	159901663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001135050	exon11	c.G1301A	p.R434Q	AGCTCCCGCCCTA		53	3	0.06	72	0	0				4	0	0.00			
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173839947	173839947	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_032522	exon3	c.G584C	p.S195T	CCACCAGCCCTCA		144	31	0.22	139	0	0				5	0	0.00			
NMNAT2	23057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183259297	183259297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_015039	exon4	c.G287A	p.C96Y	ACGCTGCAGGTCG		139	26	0.19	138	0	0				14	6	0.43			
LINC00862	0	broad.mit.edu	37	1	200342484	200342485	+	RNA	INS	-	-	A	rs11369486	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	GTAAATTAAAAAA		6	4	0.67	4	0	0				0	0				
DNAH14	127602	broad.mit.edu	37	1	225156548	225156548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	DNAH14	NM_001145154	exon7	c.C739T	p.R247W	TTATTACGGCAAT		335	6	0.02	297	0	0		300		7	0	0.00			
HSD17B7P2	0	broad.mit.edu	37	10	38666842	38666843	+	RNA	INS	-	-	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	GAATGCCTTTTTT		232	0	0.00	174	0	0				0	0				
CYP17A1	1586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	104593813	104593813	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_000102	exon4	c.A733T	p.K245X	GTATTTTATTCAG		154	35	0.23	94	0	0				1	1	1.00			
LUZP2	338645	mdanderson.org	37	11	24998198	24998198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001009909	exon8	c.C584T	p.A195V	AGAAAGCAGCTCT		52	3	0.06	47	0	0				0	0				
OR5J2	282775	broad.mit.edu;ucsc.edu	37	11	55944605	55944605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	OR5J2,right_upper_lobe,carcinoma,+1,1	OR5J2	NM_001005492	exon1	c.T512C	p.L171P	GTAGGCTAAATGC		141	19	0.13	153	2	0.0130718954		98	1	0	0				
MYRF	745	mdanderson.org	37	11	61537733	61537733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001127392	exon5	c.G476T	p.R159L	TCCTGCGCACGAT		62	3	0.05	63	0	0				0	0				
NPAS4	266743	mdanderson.org	37	11	66188671	66188671	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	NPAS4,NS,carcinoma,0,1	NPAS4	NM_178864	exon1	c.C21A	p.G7G	CAAGGGCGCCTCC		137	19	0.14	106	8	0.0754716981		0	1	0	0				
FADD	8772	mdanderson.org	37	11	70049843	70049843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_003824	exon1	c.G278T	p.G93V	CGCCTGGGGAAGA		16	2	0.13	17	0	0				53	0	0.00			
KRTAP5-7	440050	mdanderson.org	37	11	71238639	71238639	+	Missense_Mutation	SNP	A	A	G	rs199903176	bycluster;byfrequency	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001012503	exon1	c.A293G	p.Y98C	GCTGCTATAAGCC		113	8	0.07	116	1	0.0086206897	0.005			0	0				
ARHGEF17	9828	mdanderson.org	37	11	73073275	73073275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_014786	exon13	c.G4685A	p.R1562H	AGCCTCGCTGCCA		20	2	0.10	19	0	0				8	0	0.00			
WNK1	65125	broad.mit.edu	37	12	1017711	1017711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	WNK1	NM_001184985	exon28	c.G7682T	p.G2561V	TGGGTGGCTCTGC		406	11	0.03	222	5	0.0225225225		403		258	0	0.00			
.	283463	broad.mit.edu;bcgsc.ca	37	12	40827571	40827572	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	GGACTCTGTGGTT		126	23	0.18	107	0	0				0	0				
GPD1	2819	bcgsc.ca	37	12	50501424	50501424	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	GPD1,NS,carcinoma,0,1	GPD1	NM_005276	exon6	c.G687A	p.R229R	GATCCGGCTGGGA		130	6	0.05	92	0	0		23	1	2	0	0.00			
MUCL1	118430	mdanderson.org	37	12	55250643	55250643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_058173	exon3	c.G190A	p.A64T	ACCACCGCTGCTT		85	4	0.05	70	0	0				1	0	0.00			
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	90018056	90018056	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ATP2B1_ENST00000359142,NS,carcinoma,-1,2	ATP2B1_ENST00000359142	NM_001001323	exon8	c.T1248C	p.F416F	CTTCACAAAGTAT		247	30	0.12	205	0	0		-1	2	18	6	0.33			
PWP1	11137	mdanderson.org	37	12	108105950	108105950	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_007062	exon15	c.A1459T	p.S487C	TCTATTAGTGGCC		98	5	0.05	73	0	0				586	0	0.00			
CLIP1	6249	broad.mit.edu	37	12	122812693	122812694	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CLIP1	NM_001247997	exon17	c.3050_3051insA	p.T1017fs	TGGCTTGTTTCCA		233	8	0.03	157	0	0		126		200	0	0.00			
.	0	broad.mit.edu	37	14	36840945	36840945	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ENSG00000188831,NS,carcinoma,0,1	.	.	.	.	.	TCGTACGCATGAA		239	4	0.02	284	0	0			1	1223	0	0.00			
.	0	bcgsc.ca	37	14	65066984	65066984	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	GTAAAATTTTGTG		214	42	0.20	212	0	0				24	0	0.00			
TTC7B	145567	mdanderson.org	37	14	91044550	91044550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001010854	exon19	c.G2210A	p.G737D	ATCTGGCCGCGCA		125	5	0.04	143	0	0				50	0	0.00			
GOLGA6L1	283767	mdanderson.org	37	15	22743174	22743174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001001413	exon8	c.G1559A	p.R520K	TGTGGAGGCAGGA		83	7	0.08	112	0	0				0	0				
C2CD4B	388125	mdanderson.org	37	15	62457154	62457154	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001007595	exon2	c.G30T	p.S10S	TGCGGCCGAGGAA		25	2	0.08	22	0	0				3	0	0.00			
RBPMS2	348093	mdanderson.org	37	15	65043817	65043817	+	Silent	SNP	G	G	A	rs372396252		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_194272	exon2	c.C108T	p.S36S	GAGGCCGCTGACA		48	4	0.08	45	0	0				160	0	0.00			
IQGAP1	8826	mdanderson.org	37	15	91035814	91035814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_003870	exon35	c.A4499G	p.K1500R	GGAGAAAGGCCGA		52	3	0.06	50	0	0				321	0	0.00			
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1552339	1552339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_016111	exon13	c.G1587T	p.E529D	CATAGAGCGCTGG		56	9	0.16	74	0	0				130	38	0.29			
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23614909	23614909	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_024675	exon13	c.C3432T	p.L1144L	CTGACCGAGAAGT		106	8	0.08	134	0	0				151	38	0.25			
RRN3P2	0	broad.mit.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	AGTATCTTCAGAG		347	10	0.03	303	1	0.00330033				0	0				
ZNF785	146540	mdanderson.org	37	16	30594139	30594139	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_152458	exon3	c.C960A	p.R320R	GGTGAAGCGGCGG		35	3	0.09	47	0	0				9	0	0.00			
.	0	broad.mit.edu	37	16	33092505	33092505	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	CTTTCCTGTCATT		27	2	0.07	29	0	0				0	0				
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57600650	57600650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153837	exon7	c.T686C	p.F229S	CCTACTTTGCTGT		27	6	0.22	33	0	0				14	2	0.14			
E2F4	1874	hgsc.bcm.edu	37	16	67229841	67229841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001950	exon7	c.A965G	p.N322S	ACAGTAACAGCAG		129	7	0.05	104	0	0				358	12	0.03			
LOC283922	0	broad.mit.edu	37	16	74372915	74372915	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	AGTTTGTTTTTTT		23	7	0.30	10	0	0				0	0				
CENPN	55839	mdanderson.org	37	16	81053827	81053827	+	Silent	SNP	G	G	A	rs150065918		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	CENPN_ENST00000439957,colon,carcinoma,+1,2	CENPN_ENST00000439957	NM_018455	exon6	c.G477A	p.P159P	GACTCCGTACGCC		60	4	0.07	71	1	0.014084507		1	2	138	0	0.00			
FANCA	2175	mdanderson.org	37	16	89851354	89851354	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_000135	exon15	c.C1378T	p.R460X	AGCCTCGTGTGCT		45	3	0.07	81	0	0				34	0	0.00			
.	55073	bcgsc.ca	37	17	43626397	43626397	+	RNA	SNP	G	G	C	rs3868164		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	CTCCTGGTGGACT		520	52	0.10	461	19	0.0412147505				0	0				
ENTHD2	146705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79204389	79204389	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_144679	exon11	c.G984A	p.E328E	GCTGAGCTCCTGC		65	10	0.15	60	0	0				107	25	0.23			
WDR45B	56270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80573887	80573887	+	Missense_Mutation	SNP	C	C	T	rs139641537		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_019613	exon10	c.G943A	p.G315S	AGCTGCCGTCTGC		79	8	0.10	70	0	0	0			251	65	0.26			
ZNF57	126295	broad.mit.edu	37	19	2918277	2918277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	ZNF57	NM_173480	exon4	c.G1658T	p.S553I	GTGAGAGCACACA		57	3	0.05	46	0	0		57		64	0	0.00			
ARHGEF18	23370	mdanderson.org	37	19	7505295	7505295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001130955	exon1	c.G469T	p.V157F	AGGAATGTCGGTA		20	2	0.10	35	0	0				32	0	0.00			
FBN3	84467	mdanderson.org	37	19	8212313	8212313	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_032447	exon1	c.C52T	p.L18L	AGGCCAGCAGGAG		38	3	0.08	53	0	0				4	0	0.00			
CCDC159	126075	broad.mit.edu	37	19	11464523	11464523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CCDC159	NM_001080503	exon9	c.G745T	p.A249S	TCGGGGGCCTGTC		85	4	0.05	89	1	0.0112359551		35		27	0	0.00			
ZNF681	148213	mdanderson.org	37	19	23926883	23926883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_138286	exon4	c.C1469A	p.S490Y	ATTGAGGACTGGT		21	3	0.14	30	0	0				56	0	0.00			
ZNF181	339318	hgsc.bcm.edu	37	19	35232200	35232200	+	Missense_Mutation	SNP	T	T	G	rs143797666		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ZNF181,NS,carcinoma,0,5	ZNF181	NM_001029997	exon4	c.T914G	p.V305G	GCCATGTCTCATC		119	6	0.05	109	2	0.0183486239		0	5	10	0	0.00			
IFNL2	282616	broad.mit.edu	37	19	39760455	39760455	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	IL28A,NS,carcinoma,+2,1	.	NM_172138	exon5	c.A498C	p.P166P	GGCCCCAAAAAAG		134	6	0.04	135	0	0			1	0	0				
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50399126	50399126	+	Silent	SNP	G	G	A	rs138779872	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_172374	exon5	c.C264T	p.G88G	ACCAGCGCCAACC		64	9	0.14	76	0	0	0			116	0	0.00			
SSC5D	284297	broad.mit.edu	37	19	56029372	56029372	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	SSC5D	NM_001144950	exon14	c.G3729C	p.T1243T	CACCACGACCCCT		303	13	0.04	346	8	0.0231213873		65		11	0	0.00			
ZNF587B	100293516	broad.mit.edu	37	19	58353308	58353308	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	TGAAAAAGGACAC		124	4	0.03	104	0	0				25	0	0.00			
FNDC4	64838	mdanderson.org	37	2	27717514	27717514	+	Missense_Mutation	SNP	G	G	T	rs372961149	alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_022823	exon2	c.C33A	p.S11R	GAGTCCGCTGGGG		83	4	0.05	70	0	0				62	0	0.00			
FAHD2CP	0	broad.mit.edu	37	2	96679935	96679937	+	RNA	DEL	AAC	AAC	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	AAC	AAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	GTGATTAACAATT		13	6	0.46	9	1	0.1111111111				0	0				
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135630212	135630212	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_138326	exon8	c.849+1G>T	.	GGAAAGGTAAGCC		140	28	0.20	94	0	0				0	0				
CHPF	79586	mdanderson.org	37	2	220406810	220406810	+	Missense_Mutation	SNP	C	C	T	rs369325931	alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_024536	exon2	c.G416A	p.R139H	AGCGTGCGGTTCA		13	2	0.15	20	0	0				185	0	0.00			
ALPP	250	mdanderson.org	37	2	233246466	233246466	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001632	exon11	c.C1569A	p.A523A	GCTGGCCGGGACC		19	3	0.16	29	1	0.0344827586				0	0				
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233321406	233321406	+	Splice_Site	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001631	exon3	c.300+1G>A	.	TCCAAGGTAAGGG		89	17	0.19	110	0	0				0	0				
CDC25B	994	mdanderson.org	37	20	3777215	3777215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_021873	exon1	c.G37T	p.A13S	GGCTCGGCTCTCA		18	3	0.17	10	0	0				22	0	0.00			
TMX4	56255	broad.mit.edu	37	20	8000252	8000252	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	GCGCCCACCCGCC		41	21	0.51	40	17	0.425		39		6	0	0.00			
RRBP1	6238	bcgsc.ca	37	20	17639790	17639790	+	Missense_Mutation	SNP	C	C	T	rs111560928	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	RRBP1	.	.	.	.	TCTGGGCCCCCTC		206	13	0.06	234	8	0.0341880342		157		1232	196	0.16			
FAM182B	728882	hgsc.bcm.edu;mdanderson.org	37	20	25755519	25755519	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	CCACCATGCTGCC		63	7	0.11	65	0	0				3	0	0.00			
OGFR	11054	mdanderson.org	37	20	61436316	61436316	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_007346	exon1	c.C105T	p.D35D	GAGGGACGCGGAC		15	2	0.13	20	0	0				118	0	0.00			
.	0	broad.mit.edu	37	21	15461085	15461085	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	AAAAAAGAAAAGA		6	2	0.33	4	0	0				0	0				
HMGN1	3150	broad.mit.edu	37	21	40720231	40720231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	HMGN1	NM_004965	exon4	c.A113G	p.K38R	GCTGCCTTTTTCG		204	5	0.02	136	0	0		8		2084	0	0.00			
.	644637	bcgsc.ca	37	22	16346480	16346480	+	RNA	SNP	A	A	G	rs11703442	bycluster;byhapmap	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	ATGCTTAGTAGCA		141	21	0.15	82	1	0.012195122				0	0				
CECR2	27443	broad.mit.edu	37	22	17978523	17978523	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CECR2	.	.	.	.	GGAACACGAATGT		150	5	0.03	184	0	0		233		46	0	0.00			
MYO18B	84700	broad.mit.edu	37	22	26224747	26224747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	MYO18B	NM_032608	exon15	c.T2791C	p.F931L	AGATCCTTTTCCT		87	4	0.05	68	2	0.0294117647		322		0	0				
ITPR1	3708	mdanderson.org	37	3	4718333	4718333	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001099952	exon24	c.G2788T	p.E930X	GTGGGAGAGCTGA		34	3	0.09	78	0	0				2	0	0.00			
EDEM1	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	5229493	5229493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	EDEM1,NS,carcinoma,+2,1	EDEM1	NM_014674	exon1	c.G3T	p.M1I	GACCATGCAATGG		52	5	0.10	73	0	0		45	1	5	0	0.00			
PLXNB1	5364	mdanderson.org	37	3	48461313	48461313	+	Silent	SNP	C	C	T	rs2362450	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	PLXNB1,colon,carcinoma,-2,1	PLXNB1	NM_001130082	exon11	c.G2382A	p.P794P	CTCTGACGGTGAC		91	3	0.03	96	0	0		-2	1	17	0	0.00			
TMPRSS7	344805	broad.mit.edu	37	3	111799770	111799770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	TMPRSS7	NM_001042575	exon16	c.G1993T	p.G665C	GATTCGGGTGGAC		241	7	0.03	235	0	0		126		0	0				
EFCC1	79825	mdanderson.org	37	3	128720514	128720514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_024768	exon1	c.G43T	p.A15S	GAGGGCGCGGGAG		10	2	0.20	11	0	0				0	0				
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164709984	164709984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001041	exon43	c.G4964T	p.R1655L	AACCACCGAGCAT		259	32	0.12	184	0	0				0	0				
ADD1	118	broad.mit.edu	37	4	2895781	2895781	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	ADD1	NM_014190	exon5	c.T552C	p.P184P	TGTCCCTTTTGGG		175	3	0.02	172	0	0		56		86	0	0.00			
BST1	683	mdanderson.org	37	4	15704856	15704856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_004334	exon1	c.C89T	p.A30V	GCGGGGCGCGCGC		20	2	0.10	28	0	0				3	0	0.00			
LCORL	254251	mdanderson.org	37	4	18023327	18023327	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153686	exon1	c.C48T	p.A16A	GGCGGCGGCAGCA		69	4	0.06	87	0	0				0	0				
GYPB	2994	broad.mit.edu	37	4	144922392	144922392	+	Missense_Mutation	SNP	G	G	A	rs201949116	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	GYPB	NM_002100	exon2	c.C82T	p.H28Y	AAGTGTGCATTGC		483	6	0.01	497	0	0		17		0	0				
C4orf51	646603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146617775	146617775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001080531	exon2	c.G298C	p.D100H	ACTACAGATATCA		81	7	0.09	92	0	0				41	40	0.98			
.	0	bcgsc.ca	37	5	51227604	51227604	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	ATCTTACTTGAAC		27	5	0.19	26	0	0				0	0				
FCHO2	115548	broad.mit.edu	37	5	72286323	72286323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	FCHO2	NM_138782	exon4	c.G219T	p.W73C	AGTATGGGATGTA		272	5	0.02	197	0	0		96		6	0	0.00			
PCDHGA6	56109	mdanderson.org	37	5	140755446	140755446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	PCDHGA6_ENST00000517434,NS,carcinoma,0,1	PCDHGA6_ENST00000517434	NM_018919	exon1	c.G1796T	p.G599V	ACTCGGGCCAGAA		42	4	0.10	62	3	0.0483870968		0	1	0	0				
IRF4	3662	broad.mit.edu	37	6	401642	401642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	IRF4	NM_002460	exon7	c.G964A	p.D322N	GCCCCCGACGGGC		127	4	0.03	124	0	0		65		4	0	0.00			
PBX2	5089	broad.mit.edu	37	6	32156160	32156160	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	PBX2	NM_002586	exon3	c.A417T	p.A139A	TGCAGCTGCTGCT		77	4	0.05	75	0	0		29		120	0	0.00			
IBTK	25998	broad.mit.edu	37	6	82924303	82924303	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	IBTK	NM_015525	exon12	c.C1845A	p.C615X	GAGATGGCACCCT		168	4	0.02	125	0	0		128		24	0	0.00			
MAP7	9053	broad.mit.edu;mdanderson.org	37	6	136732800	136732800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	MAP7	NM_001198611	exon3	c.C268T	p.R90W	CCAGCCGCTGCCG		69	4	0.06	83	0	0		63		55	0	0.00			
ARID1B	57492	broad.mit.edu;mdanderson.org	37	6	157100005	157100005	+	Silent	SNP	C	C	A	rs184815562	bycluster;by1000genomes	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	ARID1B	NM_017519	exon1	c.C942A	p.G314G	CGGCGGCGGAGGA		51	4	0.08	39	0	0		320		0	0				
DPY19L2P1	554236	bcgsc.ca	37	7	35221093	35221094	+	RNA	DEL	AA	AA	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	AA	AA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	ATTTTCAAAAAGT		213	28	0.13	162	0	0				0	0				
NACAD	23148	broad.mit.edu	37	7	45123697	45123697	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	NACAD	NM_001146334	exon2	c.G2082A	p.S694S	GGCTGACGAGAGA		17	3	0.18	15	0	0		44		149	0	0.00			
CALD1	800	broad.mit.edu	37	7	134620437	134620437	+	Splice_Site	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CALD1	NM_033138	exon6	c.1309-2A>G	.	ATAAAAAGGGAGA		163	4	0.02	143	0	0		150		4	0	0.00			
ZNF786	136051	mdanderson.org	37	7	148768896	148768896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_152411	exon4	c.C968A	p.P323Q	GAGGCCGGCCCCT		19	2	0.11	16	0	0				29	0	0.00			
RHEB	6009	broad.mit.edu	37	7	151188048	151188048	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	RHEB,NS,carcinoma,-2,3	RHEB	NM_005614	exon2	c.C105G	p.Y35X	TGGATCGTAGGAG		95	4	0.04	103	0	0		30	3	299	1	0.00			
RHEB	6009	hgsc.bcm.edu;broad.mit.edu	37	7	151188050	151188050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	RHEB,NS,carcinoma,0,3	RHEB	NM_005614	exon2	c.T103C	p.Y35H	GATCGTAGGAGTC		93	4	0.04	98	0	0		0	3	299	2	0.01			
DLC1	10395	broad.mit.edu;bcgsc.ca	37	8	13357185	13357185	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	DLC1	NM_182643	exon2	c.396delG	p.G132fs	TTTCTGCCCTTGG		125	19	0.15	176	0	0		411		2	0	0.00			
PCMTD1	115294	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	52733191	52733191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	PCMTD1,NS,carcinoma,+1,1	PCMTD1	NM_052937	exon6	c.C794T	p.A265V	CCCTTGGCCTGCA		137	7	0.05	143	0	0		1	1	16	0	0.00			
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106813720	106813720	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_012082	exon8	c.A1410T	p.I470I	AAAAATAAAGTCT		87	20	0.23	62	0	0				8	2	0.25			
HHLA1	10086	mdanderson.org	37	8	133089975	133089975	+	Nonsense_Mutation	SNP	A	A	T	rs2280851	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001145095	exon11	c.T1169A	p.L390X	TTACCCAAGGTAG		99	3	0.03	98	0	0				0	0				
ARC	23237	broad.mit.edu	37	8	143694937	143694937	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ARC,caecum,carcinoma,0,1	ARC	NM_015193	exon1	c.C696T	p.G232G	AGAGCCGCCCACC		53	4	0.08	68	1	0.0147058824		34	1	1	0	0.00			
LURAP1L	286343	hgsc.bcm.edu;broad.mit.edu	37	9	12821707	12821707	+	Missense_Mutation	SNP	A	A	G	rs199636506	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_203403	exon2	c.A635G	p.Q212R	ACTCACAGGCACT		90	4	0.04	83	0	0				2	0	0.00			
CDKN2B	1030	mdanderson.org	37	9	22006138	22006138	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_004936	exon2	c.C265A	p.R89R	CCTCCCGGGCAGC		27	3	0.11	25	0	0				3	0	0.00			
WNK2	65268	mdanderson.org	37	9	95947607	95947607	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_006648	exon1	c.T396A	p.A132A	AGCCGCTGTCGAA		26	3	0.12	10	0	0				14	0	0.00			
NDP	4693	broad.mit.edu	37	X	43817791	43817791	+	Missense_Mutation	SNP	G	G	C	rs144031424	bycluster;alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	NDP	NM_000266	exon2	c.C101G	p.S34W	GGGTCCGAGTCCA		107	4	0.04	113	0	0		12		1	0	0.00			
EBP	10682	broad.mit.edu	37	X	48385673	48385673	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	EBP	NM_006579	exon4	c.G469T	p.G157C	TCTGTGGGTAAGG		71	3	0.04	49	0	0		30		359	0	0.00			
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51637753	51637753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001005333	exon3	c.C76A	p.P26T	TGTCACCCCCTCC		119	39	0.33	107	0	0				3	3	1.00			
KLF8	11279	bcgsc.ca	37	X	56295891	56295891	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	KLF8	NM_001159296	exon5	c.G727C	p.A243P	TCCTCAGCCTTGC		76	4	0.05	59	0	0		38		48	0	0.00			
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79959062	79959062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153252	exon24	c.C2752A	p.P918T	CATTAGGCTCACC		486	134	0.28	361	0	0				75	34	0.45			
NXF4	55999	hgsc.bcm.edu	37	X	101819124	101819124	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	.	.	.	.	TCTCCTGTCTCTC		102	6	0.06	90	0	0				0	0				
CXorf64	100130613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125954748	125954748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001122716	exon2	c.G127A	p.D43N	CCAGAGGATGACG		161	51	0.32	162	0	0				0	0