Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CROCCP2	0	broad.mit.edu	37	1	16946455	16946456	+	RNA	INS	-	-	GCTCACGCTGCA	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TCCTCCTGCTCAC		107	8	0.07	95	0	0				21	0	0.00			
PTP4A2	8073	mdanderson.org	37	1	32375675	32375675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_080391	exon5	c.G359T	p.G120V	TTCATTCCACATT		48	3	0.06	50	0	0				411	0	0.00			
FNBP1L	54874	bcgsc.ca	37	1	93996313	93996313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	FNBP1L	NM_001164473	exon7	c.C512T	p.A171V	CCTAGGCCAAACA		626	1	0.00	591	1	0.0016920474		56		31	0	0.00			
TRIM46	80128	broad.mit.edu	37	1	155148054	155148054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TRIM46	NM_025058	exon2	c.A256C	p.T86P	CCTTCCACCCGCA		128	44	0.34	67	21	0.3134328358		79		1	0	0.00			
POU5F1P4	645682	hgsc.bcm.edu	37	1	155403978	155403978	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	ACTCCTCGGTCCC		314	69	0.22	264	0	0				481	0	0.00			
DCAF8	50717	broad.mit.edu	37	1	160188742	160188742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	DCAF8	NM_015726	exon12	c.C1457A	p.P486H	GGGTGGGGCTCAA		334	6	0.02	249	1	0.0040160643		64		143	0	0.00			
ABL2	27	broad.mit.edu	37	1	179198478	179198478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ABL2	NM_001168238	exon1	c.C55A	p.P19T	CGCGGGGCTGAGG		112	8	0.07	82	2	0.0243902439		307		1	0	0.00			
ANK3	288	bcgsc.ca	37	10	61844468	61844468	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ANK3	NM_001204404	exon33	c.T3969A	p.D1323E	TACGGGATCATTC		105	0	0.00	135	0	0		703		20	0	0.00			
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	70332383	70332383	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_030625	exon2	c.C288G	p.S96S	AGAGTCCTTAACC		102	38	0.37	104	0	0				7	4	0.57			
ASCC1	51008	mdanderson.org	37	10	73970549	73970549	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001198798	exon3	c.G153A	p.E51E	CTCCACCTCGTAG		54	3	0.06	72	0	0				43	0	0.00			
STAMBPL1	57559	bcgsc.ca	37	10	90672864	90672864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	STAMBPL1	NM_020799	exon6	c.T427C	p.Y143H	AACAAATATAAAG		46	0	0.00	38	0	0		63		27	0	0.00			
CYP26A1	0	broad.mit.edu;mdanderson.org	37	10	94834916	94834916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	CYP26A1,NS,carcinoma,0,1	CYP26A1	NM_000783	exon4	c.C716A	p.A239E	TGAAGGCGCGGAA		90	6	0.07	126	2	0.0158730159		59	1	7	0	0.00			
MMS19	64210	bcgsc.ca	37	10	99218609	99218609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MMS19	NM_022362	exon30	c.G3013A	p.D1005N	TGTCATCCAGGGG		168	0	0.00	150	0	0		36		115	0	0.00			
SEC31B	25956	bcgsc.ca	37	10	102250017	102250017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SEC31B	NM_015490	exon21	c.C2713T	p.P905S	TCCCAGGGAATCC		127	0	0.00	137	0	0		84		4	0	0.00			
WDR96	80217	mdanderson.org	37	10	105953723	105953723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_025145	exon11	c.C1343A	p.T448K	TCCTCCGTGCCCA		46	3	0.07	55	0	0				1	0	0.00			
NRAP	4892	broad.mit.edu	37	10	115383357	115383357	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	NRAP	NM_001261463	exon23	c.A2388G	p.K796K	AAACCCTTTTGCT		133	4	0.03	177	0	0		208		0	0				
CKAP5	9793	bcgsc.ca	37	11	46812057	46812057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CKAP5	NM_014756	exon14	c.G1727C	p.G576A	TCCAGTCCTTTCT		128	0	0.00	165	0	0		134		50	0	0.00			
SLC15A3	51296	mdanderson.org	37	11	60718684	60718684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_016582	exon1	c.G340A	p.A114T	CCGAGGCGGCCAG		12	2	0.17	18	0	0				8	0	0.00			
POU2F3	25833	mdanderson.org	37	11	120176445	120176445	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001244682	exon8	c.G726A	p.K242K	CTTCAAGAACATG		50	3	0.06	111	0	0				4	0	0.00			
WNT5B	81029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	1755317	1755317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_032642	exon5	c.A979G	p.K327E	CAGTTCAAGAGCG		133	55	0.41	61	0	0				56	24	0.43			
CLSTN3	9746	broad.mit.edu	37	12	7302201	7302201	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CLSTN3	NM_014718	exon14	c.C2157A	p.P719P	GGATCCCGAGCGG		321	4	0.01	120	0	0		84		221	0	0.00			
ESYT1	23344	mdanderson.org	37	12	56532268	56532268	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	ESYT1,caecum,carcinoma,+2,2	ESYT1	NM_001184796	exon22	c.G2448A	p.R816R	GGAGCGGGCAGAG		53	3	0.06	42	0	0		2	2	109	0	0.00			
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	112641514	112641514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001109662	exon54	c.G7930A	p.A2644T	GCAGAGCAGTTCC		202	66	0.33	175	0	0				18	9	0.50			
TPTE2	93492	broad.mit.edu	37	13	20025336	20025336	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TPTE2	NM_199254	exon12	c.T771C	p.H257H	GTTTCGATGTTTC		93	5	0.05	86	1	0.011627907		225		0	0				
KLHDC2	23588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	50249093	50249093	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014315	exon11	c.G962C	p.W321S	GGTTATGGCACAC		165	39	0.24	119	0	0				155	41	0.26			
ACOT6	641372	broad.mit.edu	37	14	74086410	74086410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ACOT6	NM_001037162	exon2	c.T491G	p.L164W	CTGTTTTGGGTGA		145	9	0.06	98	3	0.0306122449		12		1	0	0.00			
UBE3A	7337	broad.mit.edu	37	15	25584318	25584318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	UBE3A	NM_000462	exon14	c.C2594A	p.A865D	GTGATGGCCTTCA		57	3	0.05	72	1	0.0138888889		109		43	0	0.00			
SLCO3A1	28232	mdanderson.org	37	15	92647550	92647550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_013272	exon4	c.G787T	p.A263S	ATCGGAGCCTGGT		50	3	0.06	87	0	0				6	0	0.00			
MCTP2	55784	mdanderson.org	37	15	94841503	94841503	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_018349	exon1	c.G9T	p.L3L	GGATCTGGATAAA		31	3	0.10	49	1	0.0204081633				2	0	0.00			
ADAMTS17	170691	broad.mit.edu	37	15	100672218	100672218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ADAMTS17	NM_139057	exon12	c.A1715C	p.N572T	GGGGGGTTGTCAC		86	25	0.29	83	9	0.1084337349		127		0	0				
RHBDF1	64285	hgsc.bcm.edu	37	16	108513	108513	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_022450	exon18	c.C2394A	p.Y798X	TTTCCGGTACAGG		132	6	0.05	162	0	0				68	0	0.00			
NPRL3	8131	bcgsc.ca	37	16	139811	139811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	NPRL3	.	.	.	.	CTCCTCGCTGGGT		70	0	0.00	61	0	0		73		44	0	0.00			
PKD1	5310	mdanderson.org	37	16	2158642	2158642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001009944	exon15	c.C6526A	p.R2176S	AGTCGCGCAGGTC		48	3	0.06	61	0	0				7	0	0.00			
SMG1	23049	ucsc.edu;mdanderson.org	37	16	18846457	18846457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SMG1	NM_015092	exon49	c.C8087A	p.P2696H	GTTGGGGGTGGCT		54	5	0.09	74	0	0		401		26	0	0.00			
SRCAP	10847	hgsc.bcm.edu;mdanderson.org	37	16	30732775	30732775	+	Silent	SNP	C	C	A	rs368322185	alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	SRCAP,NS,carcinoma,+2,1	SRCAP	NM_006662	exon21	c.C3519A	p.P1173P	ATCTCCCGATATG		29	2	0.07	56	0	0		2	1	37	0	0.00			
PELP1	27043	mdanderson.org	37	17	4594224	4594224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014389	exon3	c.C379A	p.H127N	CACAGTGCTGCTG		108	5	0.05	97	0	0				142	1	0.01			
AIPL1	23746	mdanderson.org	37	17	6328803	6328803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014336	exon6	c.C1132A	p.P378T	GCCCTGGGGACGG		12	2	0.17	16	0	0				12	0	0.00			
DRG2	1819	mdanderson.org	37	17	18002382	18002382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001388	exon4	c.G367A	p.A123T	GAAGGCGCAGCCC		93	5	0.05	52	0	0				76	0	0.00			
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	MAPK7,NS,carcinoma,0,2	MAPK7	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA		72	6	0.08	66	1	0.0151515152		72	2	68	12	0.18			
.	0	broad.mit.edu	37	17	21477627	21477627	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	GTGGACCCCGTGG		34	3	0.09	33	0	0				0	0				
PIPOX	51268	broad.mit.edu	37	17	27380007	27380007	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PIPOX	NM_016518	exon3	c.G333T	p.S111S	TCTGTCGAGGCAG		219	6	0.03	145	0	0		42		31	0	0.00			
PLEKHM1	9842	bcgsc.ca	37	17	43522989	43522989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PLEKHM1	NM_014798	exon9	c.C2684T	p.A895V	GGCTGGGCCCGGA		151	0	0.00	118	0	0		69		28	0	0.00			
RGS9	8787	mdanderson.org	37	17	63133690	63133690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001081955	exon1	c.G32T	p.R11M	AGTACAGGCCGAG		56	3	0.05	48	0	0				8	1	0.13			
PRPSAP1	5635	mdanderson.org	37	17	74349755	74349755	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_002766	exon1	c.G30A	p.P10P	GGAGGGCGGGGGC		34	3	0.09	25	0	0				18	0	0.00			
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	29122743	29122743	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	DSG2,NS,malignant_melanoma,+1,2	DSG2	NM_001943	exon14	c.C2262T	p.S754S	GGCTTCCAGAGAC		88	35	0.40	115	0	0		1	2	138	58	0.42			
KIAA1468	57614	mdanderson.org	37	18	59854893	59854893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020854	exon1	c.C155T	p.A52V	GCTCTGCGGGCTC		49	3	0.06	77	0	0				6	0	0.00			
DIRAS1	148252	mdanderson.org	37	19	2717599	2717599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	DIRAS1,bladder,carcinoma,0,1	DIRAS1	NM_145173	exon2	c.C206T	p.P69L	ATGGCCGGGAACT		64	3	0.05	60	0	0		0	1	12	0	0.00			
DOHH	83475	broad.mit.edu	37	19	3496745	3496745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	DOHH	NM_001145165	exon2	c.C68A	p.A23D	AAGCGGGCCTGCA		61	7	0.11	44	0	0		12		50	3	0.06			
CACNA1A	773	mdanderson.org	37	19	13318657	13318657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001127222	exon47	c.G6991T	p.G2331C	CCCGGCCCGGCCT		13	4	0.31	8	0	0				0	0				
LRP3	4037	mdanderson.org	37	19	33697230	33697230	+	Silent	SNP	C	C	T	rs139510018	bycluster;by1000genomes	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_002333	exon5	c.C1554T	p.C518C	GGGCTGCGCCTTC		47	3	0.06	39	0	0	0.001			102	0	0.00			
U2AF1L4	199746	mdanderson.org	37	19	36233689	36233689	+	Missense_Mutation	SNP	G	G	T	rs187720109	bycluster;by1000genomes	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001040425	exon6	c.C477A	p.F159L	AGTATGGAACCTC		21	3	0.14	30	0	0				41	0	0.00			
RYR1	6261	bcgsc.ca	37	19	38948767	38948767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	RYR1	NM_001042723	exon18	c.G2002T	p.D668Y	ATGGTGGACGAGG		76	0	0.00	91	0	0		708		0	0				
PUM2	23369	broad.mit.edu	37	2	20454645	20454645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PUM2	NM_015317	exon18	c.T2849C	p.L950P	TGACTCAGGGCTA		361	5	0.01	229	1	0.0043668122		91		130	0	0.00			
BIRC6	57448	bcgsc.ca	37	2	32626436	32626436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	BIRC6	NM_016252	exon7	c.G1240C	p.V414L	TGGGATGTTTCCA		184	0	0.00	131	0	0		838		13	0	0.00			
.	0	broad.mit.edu	37	2	38710046	38710047	+	RNA	DNP	TA	TA	AT	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AAATAATAAATAA		59	18	0.31	32	0	0				0	0				
HAAO	23498	broad.mit.edu	37	2	43015711	43015711	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	HAAO,NS,carcinoma,0,1	HAAO	NM_012205	exon2	c.C117A	p.G39G	GTTGGGGCCTCCG		180	6	0.03	143	4	0.027972028		26	1	27	0	0.00			
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	48026849	48026849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_000179	exon4	c.A1727C	p.D576A	CAGATGATCGCCA		219	78	0.36	153	0	0				261	85	0.33			
FOXN2	3344	broad.mit.edu	37	2	48602092	48602092	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	FOXN2	NM_002158	exon7	c.806delA	p.Q269fs	CATTGCAAAAAAA		533	8	0.02	471	0	0		39		7	0	0.00			
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	48809124	48809124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001198595	exon3	c.A1352G	p.N451S	ATGGGAACCTGGA		187	44	0.24	148	0	0				13	2	0.15			
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	54155274	54155274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014614	exon11	c.A1483G	p.N495D	AGTCATTTGGATC		168	44	0.26	169	0	0				20	7	0.35			
ZEB2	9839	mdanderson.org	37	2	145147444	145147444	+	Missense_Mutation	SNP	G	G	T	rs139944383	byfrequency;alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014795	exon10	c.C3219A	p.H1073Q	ATTCATGTGCTGC		46	3	0.07	60	0	0				54	0	0.00			
NEB	4703	mdanderson.org	37	2	152359335	152359335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001271208	exon168	c.T24005C	p.V8002A	CGTTTGACTCTCT		66	3	0.05	92	0	0				0	0				
LRRFIP1	9208	broad.mit.edu	37	2	238664755	238664756	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	LRRFIP1	NM_001137550	exon16	c.1056_1057insC	p.K352fs	GGAAAAACACGCC		480	8	0.02	397	0	0		171		95	0	0.00			
ASXL1	171023	broad.mit.edu;mdanderson.org	37	20	31017716	31017716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ASXL1	NM_015338	exon7	c.G578A	p.C193Y	CGGGCTGCCACGC		35	3	0.09	32	0	0		1114		20	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11096512	11096516	+	RNA	DEL	GTTTT	GTTTT	-	rs139100150	alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	GTTTT	GTTTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TTTTAAGTTTTGT		7	5	0.71	4	0	0				0	0				
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	43531009	43531009	+	Missense_Mutation	SNP	G	G	A	rs200274014		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_173568	exon11	c.G1677A	p.M559I	CCCCATGGGCGGT		307	74	0.24	182	0	0				0	0				
SLC37A1	54020	bcgsc.ca	37	21	43999906	43999906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SLC37A1	NM_018964	exon20	c.G1582A	p.V528I	GACCAAGTTCCGT		105	0	0.00	42	0	0		48		58	0	0.00			
LRP5L	91355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	25755835	25755835	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001135772	exon3	c.C225T	p.D75D	GTCCATGTCCTCT		122	71	0.58	163	0	0				11	10	0.91			
SYN3	8224	mdanderson.org	37	22	33265025	33265025	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_003490	exon4	c.C549A	p.G183G	CTGCAGGCCGATG		49	3	0.06	95	0	0				2	0	0.00			
KCTD17	79734	mdanderson.org	37	22	37456899	37456899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_024681	exon6	c.G670C	p.E224Q	CAGCAGGAGGAGG		54	3	0.06	46	0	0				1	1	1.00			
TTC38	55020	mdanderson.org	37	22	46664423	46664423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_017931	exon2	c.G46T	p.A16S	AAGGATGCGAGGC		66	4	0.06	82	1	0.012195122				30	0	0.00			
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	4747945	4747945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001099952	exon37	c.G4725T	p.M1575I	AGCCATGAACTGG		108	26	0.24	73	0	0				14	3	0.21			
CMTM8	152189	broad.mit.edu	37	3	32280541	32280541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CMTM8	NM_178868	exon1	c.G77C	p.S26T	CCACCAGCAGCAG		301	6	0.02	283	2	0.0070671378		9		19	0	0.00			
ANKRD18DP	0	broad.mit.edu	37	3	197792303	197792304	+	RNA	INS	-	-	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	CAACATTAAAAAA		6	2	0.33	4	0	0				0	0				
SEPSECS	51091	mdanderson.org	37	4	25125839	25125839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_016955	exon11	c.C1220A	p.P407H	CCAAGAGGCACAA		51	3	0.06	58	0	0				2	0	0.00			
KIT	3815	bcgsc.ca	37	4	55599338	55599338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	KIT,NS,malignant_melanoma,0,44	KIT	NM_000222	exon17	c.A2464T	p.N822Y	GATTCTAATTATG		88	0	0.00	90	0	0		7396	44	11	0	0.00			
YTHDC1	91746	broad.mit.edu	37	4	69202911	69202911	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	YTHDC1	NM_001031732	exon4	c.A717G	p.E239E	CTCCTCTTCCTCC		80	4	0.05	107	6	0.0560747664		81		5	0	0.00			
YTHDC1	91746	broad.mit.edu	37	4	69202914	69202914	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	YTHDC1	NM_001031732	exon4	c.G714A	p.E238E	CTCTTCCTCCTCC		85	3	0.04	110	2	0.0181818182		81		4	1	0.25	rescued with RNA-seq		
SLC9A3	6550	mdanderson.org	37	5	476743	476743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_004174	exon12	c.A1805G	p.E602G	CGCTGCTCCAGAG		28	3	0.11	53	0	0				9	0	0.00			
FBXO4	26272	mdanderson.org	37	5	41925427	41925427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_033484	exon1	c.C16T	p.P6S	AGCGAGCCGCGCA		35	3	0.09	41	0	0				9	0	0.00			
NLN	57486	mdanderson.org	37	5	65108215	65108215	+	Silent	SNP	A	A	T	rs2254485	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020726	exon12	c.A1977T	p.P659P	GAATCCAGAGGTA		55	3	0.05	58	0	0				42	0	0.00			
HMGCR	3156	broad.mit.edu;mdanderson.org	37	5	74651007	74651007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	HMGCR	NM_000859	exon13	c.G1690A	p.A564T	CTTGTGGCCAGCA		160	6	0.04	162	0	0		53		38	0	0.00			
RANBP17	64901	bcgsc.ca	37	5	170669748	170669748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	RANBP17	NM_022897	exon24	c.G2700T	p.M900I	CCATATGAGCTTC		147	1	0.01	152	0	0		108		10	0	0.00			
MDGA1	266727	broad.mit.edu	37	6	37615066	37615066	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MDGA1	NM_153487	exon10	c.C1929A	p.T643T	GTTGGGGGTGTCG		114	7	0.06	62	0	0		104		3	0	0.00			
TMEM151B	441151	mdanderson.org	37	6	44243528	44243528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001137560	exon3	c.C965T	p.T322M	ACCGCACGGCCTA		24	2	0.08	23	0	0				0	0				
TMEM242	729515	broad.mit.edu	37	6	157739925	157739925	+	Silent	SNP	C	C	T	rs376664299		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_018452	exon3	c.G216A	p.P72P	GCTTTCCGGTAAT		208	4	0.02	258	0	0				36	0	0.00			
SDK1	221935	bcgsc.ca	37	7	4304811	4304811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SDK1	NM_152744	exon45	c.A6437G	p.Y2146C	ACCACTACATGAG		134	0	0.00	82	0	0		361		16	0	0.00			
SLC29A4	222962	broad.mit.edu	37	7	5340085	5340085	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	SLC29A4,NS,carcinoma,+2,1	SLC29A4	NM_153247	exon10	c.C1242G	p.G414G	GCGGGGCACCCAC		139	11	0.08	85	5	0.0588235294		52	1	32	1	0.03			
GRID2IP	392862	broad.mit.edu	37	7	6547896	6547901	+	In_Frame_Del	DEL	CTGAGC	CTGAGC	-	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	CTGAGC	CTGAGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	GRID2IP	NM_001145118	exon13	c.2259_2264del	p.753_755del	GGGGGGCTGAGCG		62	0	0.00	37	0	0		82		1	0	0.00			
AQP1	358	mdanderson.org	37	7	30951907	30951907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_198098	exon1	c.A383G	p.D128G	GCAATGACGTGAG		49	3	0.06	33	0	0				64	0	0.00			
CCT6P1	0	broad.mit.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TCTGGCGTTTTTT		37	4	0.11	19	0	0				24	0	0.00			
MLL5	55904	bcgsc.ca	37	7	104703808	104703808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MLL5	NM_018682	exon4	c.A197G	p.Y66C	ATAATTATGGTGC		173	0	0.00	134	0	0		173		23	0	0.00			
HYAL4	23553	bcgsc.ca	37	7	123508991	123508991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	HYAL4	NM_012269	exon3	c.G664A	p.D222N	TATCCTGATTGCC		105	0	0.00	103	0	0		65		22	0	0.00			
SLC37A3	84255	bcgsc.ca	37	7	140064288	140064288	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SLC37A3	NM_207113	exon5	c.C295T	p.L99L	TGAATAGGCCCTA		145	0	0.00	110	0	0		80		59	0	0.00			
EPHB6	2051	bcgsc.ca;mdanderson.org	37	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT		103	6	0.06	95	1	0.0105263158		168		6	0	0.00			
C8orf58	541565	broad.mit.edu	37	8	22458529	22458529	+	Missense_Mutation	SNP	G	G	A	rs374180743	alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	C8orf58	NM_001013842	exon2	c.G175A	p.A59T	AGGGAGGCACTCT		192	6	0.03	168	1	0.005952381		17		25	0	0.00			
ZFHX4	79776	mdanderson.org	37	8	77775451	77775451	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	ZFHX4,colon,carcinoma,0,3	ZFHX4	NM_024721	exon11	c.T9501A	p.P3167P	ACCACCTCCTCCT		86	5	0.06	118	0	0		0	3	9	1	0.11			
LRP12	29967	bcgsc.ca	37	8	105509852	105509852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	LRP12	NM_013437	exon5	c.G928T	p.G310C	CATAACCAGTACC		264	1	0.00	255	0	0		124		21	0	0.00			
.	0	bcgsc.ca	37	9	40500069	40500069	+	RNA	SNP	A	A	T	rs2774142	by2hit2allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AACCCAACTTTTT		165	7	0.04	189	3	0.0158730159				0	0				
.	0	bcgsc.ca	37	9	40500132	40500132	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TTTCCCCTTTTCT		322	2	0.01	368	4	0.0108695652				1	0	0.00			
MIR3134	100422990	hgsc.bcm.edu	37	9	115060046	115060046	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	AAATAAGAGCATT		24	20	0.83	22	0	0				0	0				
CIZ1	25792	mdanderson.org	37	9	130941375	130941375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001257975	exon8	c.C1201T	p.P401S	TCTGTGGCTCTGC		87	4	0.05	80	0	0				117	0	0.00			
ADAMTSL2	9719	mdanderson.org	37	9	136404996	136404996	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	ADAMTSL2,colon,carcinoma,0,1	ADAMTSL2	NM_001145320	exon5	c.412+1G>T	.	ACCCGGGTACCTG		47	3	0.06	51	0	0		0	1	0	0				
CNKSR2	22866	broad.mit.edu	37	X	21450746	21450746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CNKSR2	NM_001168647	exon3	c.C245A	p.T82K	TGGAAACAGAAAA		355	11	0.03	189	3	0.0158730159		158		0	0				
POLA1	5422	broad.mit.edu	37	X	24759594	24759594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	POLA1	NM_016937	exon21	c.G2301T	p.Q767H	ATTGCAGATCACT		184	5	0.03	66	0	0		117		27	0	0.00			
RBM10	8241	bcgsc.ca	37	X	47039331	47039331	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	RBM10	NM_001204468	exon10	c.G1149T	p.G383G	CCTGGGGGCCCTG		237	0	0.00	134	0	0		117		71	0	0.00			
SYN1	6853	broad.mit.edu	37	X	47478985	47478985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SYN1	NM_006950	exon1	c.C143T	p.T48I	GTGGCGGTCCCGG		56	3	0.05	45	0	0		84		2	0	0.00			
BCYRN1	6872	broad.mit.edu;mdanderson.org	37	X	70679068	70679068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TGATGAGGAGGAG		65	4	0.06	50	0	0				17	0	0.00			
MAGEC1	9947	broad.mit.edu	37	X	140993906	140993908	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	CCT	CCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MAGEC1	NM_005462	exon4	c.716_718del	p.239_240del	TGAGCCCCTCCTC		1569	8	0.01	1002	0	0		317		0	0				
PLXNB3	5365	broad.mit.edu	37	X	153039474	153039474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PLXNB3	NM_001163257	exon21	c.A3509C	p.N1170T	AGCCCAACCCCCG		58	13	0.22	39	5	0.1282051282		208		1	0	0.00