Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV KAZN 23254 hgsc.bcm.edu 37 1 15392249 15392249 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 RP1-21O18_1,NS,carcinoma,-1,1 RP1-21O18_1 NM_015209 exon8 c.G1222T p.G408C TTTGATGGTACCG 97 4 0.04 75 0 0 -1 1 24 0 0.00 MAP3K6 9064 mdanderson.org 37 1 27684931 27684931 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_004672 exon20 c.C2755A p.R919R CATGTCGTGGGGA 41 3 0.07 38 0 0 18 0 0.00 SERINC2 347735 broad.mit.edu 37 1 31897662 31897662 + Missense_Mutation SNP A A C novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . SERINC2 NM_001199038 exon4 c.A361C p.T121P TTTTTCACCCTGC 97 21 0.22 112 19 0.1696428571 44 18 1 0.06 KCNA10 3744 broad.mit.edu 37 1 111060761 111060761 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . KCNA10 NM_005549 exon1 c.G649A p.A217T CCACAGCACGGGC 189 4 0.02 155 0 0 92 0 0 PDIA3P 0 broad.mit.edu 37 1 146651215 146651215 + RNA SNP G G C novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . CAGTAGGCAAACA 32 3 0.09 24 0 0 29 2 0.07 FAM129A 116496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 184767257 184767257 + Missense_Mutation SNP T T A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_052966 exon13 c.A1622T p.Y541F TCCTCATAGACAT 54 17 0.31 64 0 0 3 0 0.00 SKIDA1 387640 broad.mit.edu;bcgsc.ca 37 10 21805720 21805720 + Silent SNP A A G novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_207371 exon4 c.T1032C p.H344H GTGGTGATGGTGG 26 4 0.15 23 0 0 2 0 0.00 SKIDA1 387640 mdanderson.org 37 10 21806056 21806056 + Silent SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_207371 exon4 c.C696T p.A232A AGCAGCGGCGGCG 13 2 0.15 18 0 0 0 0 GAD2 2572 mdanderson.org 37 10 26581439 26581439 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_000818 exon14 c.G1432T p.A478S GAGTTGGCAGAGT 50 3 0.06 86 0 0 10 0 0.00 LRIT2 340745 mdanderson.org 37 10 85985212 85985212 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001017924 exon1 c.C65A p.P22H CAGAAAGGCTGAG 54 3 0.06 61 0 0 0 0 SLIT1 6585 mdanderson.org 37 10 98778349 98778349 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_003061 exon28 c.C2963A p.P988Q GTGAACGGGGCAT 50 3 0.06 69 0 0 0 0 DUSP8 1850 mdanderson.org 37 11 1579110 1579110 + Silent SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_004420 exon6 c.C735T p.H245H CAGACAGTGGACG 43 3 0.07 50 0 0 37 0 0.00 GTF2H1 2965 mdanderson.org 37 11 18354649 18354649 + Missense_Mutation SNP C C A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001142307 exon3 c.C28A p.L10M GTTTTGCTGATTG 19 2 0.11 41 0 0 10 0 0.00 NAV2 89797 bcgsc.ca 37 11 20005718 20005718 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 NAV2,colon,carcinoma,+1,1 NAV2 NM_001244963 exon12 c.G2762T p.R921L TGAACCGGCTCCC 59 5 0.08 58 1 0.0172413793 255 1 1 0 0.00 SLC1A2 6506 broad.mit.edu 37 11 35308373 35308373 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . SLC1A2 NM_004171 exon8 c.C1217A p.A406E GCTACCGCTTCAT 124 3 0.02 141 0 0 54 2 0 0.00 PTGDR2 11251 broad.mit.edu 37 11 60620376 60620376 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_004778 exon2 c.G820A p.A274T GGTTTGCGTGCGC 55 5 0.09 43 1 0.023255814 0 0 SLC22A12 116085 mdanderson.org 37 11 64367948 64367948 + Splice_Site SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001276326 exon8 c.1292+1G>T . GCTCAGGTGAGGC 40 3 0.08 32 0 0 0 0 . 0 broad.mit.edu 37 11 96486607 96486607 + RNA DEL T T - novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . TGGCTCTCCCAGT 6 2 0.33 9 0 0 0 0 DDX10 1662 mdanderson.org 37 11 108594024 108594024 + Silent SNP A A G novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_004398 exon13 c.A1800G p.K600K AGCAAAAGGATCT 44 3 0.07 52 0 0 84 0 0.00 DCP1B 196513 mdanderson.org 37 12 2062350 2062350 + Missense_Mutation SNP C C G novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 DCP1B,bladder,carcinoma,0,13 DCP1B NM_152640 exon7 c.G756C p.Q252H CTGCTGCTGGTGG 51 3 0.06 10 0 0 0 13 68 0 0.00 FGD4 121512 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 12 32734925 32734925 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_139241 exon4 c.G124T p.E42X AAGAAAGAGTCTG 260 11 0.04 108 0 0 46 0 0.00 TMEM117 84216 mdanderson.org 37 12 44537344 44537344 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_032256 exon4 c.G427T p.D143Y ATTACAGACTATA 43 3 0.07 42 0 0 4 0 0.00 NCOR2 9612 hgsc.bcm.edu;mdanderson.org 37 12 124887102 124887102 + Silent SNP C C T rs7488825 bycluster;alternate_allele TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_006312 exon16 c.G1488A p.Q496Q TTGTTGCTGCTGC 66 7 0.11 43 0 0 21 2 0.10 EBPL 84650 broad.mit.edu 37 13 50235138 50235138 + Missense_Mutation SNP T T G novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 EBPL,NS,carcinoma,0,2 EBPL NM_032565 exon4 c.A587C p.Q196P TCTTTCTGATGCA 120 4 0.03 104 0 0 44 2 509 0 0.00 EBPL 84650 broad.mit.edu 37 13 50235160 50235160 + Missense_Mutation SNP G G C novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 EBPL,NS,carcinoma,0,9 EBPL NM_032565 exon4 c.C565G p.L189V GTTCTAGCCATGA 120 4 0.03 105 0 0 44 9 570 1 0.00 IRS2 8660 broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 110435838 110435838 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . IRS2 NM_003749 exon1 c.G2563A p.G855R CGGCCCCGAAGGC 25 12 0.48 24 0 0 44 0 0 MCF2L 23263 mdanderson.org 37 13 113742028 113742028 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001112732 exon23 c.C2603T p.A868V TGGCTGCCGTTGG 32 3 0.09 78 0 0 4 0 0.00 PRKCH 5583 mdanderson.org 37 14 62016436 62016436 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 PRKCH,NS,carcinoma,0,1 PRKCH NM_006255 exon14 c.G1939T p.D647Y GACCCTGACTTCA 48 3 0.06 44 0 0 0 1 25 0 0.00 ADAM21P1 0 broad.mit.edu 37 14 70713742 70713742 + RNA SNP G G T rs78990308 TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . AACAACGAGCTCC 110 11 0.10 106 1 0.0094339623 0 0 VPS18 57617 mdanderson.org 37 15 41191492 41191492 + Missense_Mutation SNP C C A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_020857 exon4 c.C476A p.P159H CAGGCCCCATCCT 30 3 0.10 38 0 0 19 0 0.00 EPB42 2038 mdanderson.org 37 15 43500507 43500507 + Silent SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_000119 exon8 c.C1086T p.C362C CATCCAGCACTCT 41 3 0.07 74 0 0 0 0 PLEKHO2 80301 mdanderson.org 37 15 65157590 65157590 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_025201 exon6 c.G976T p.G326C TCCATGGGTGAGA 47 3 0.06 58 0 0 22 0 0.00 CLCN7 1186 broad.mit.edu;mdanderson.org 37 16 1505139 1505139 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . CLCN7 NM_001287 exon12 c.C1094A p.S365X ACCTCCGAGTCAA 89 5 0.06 89 0 0 53 33 0 0.00 VAT1L 57687 mdanderson.org 37 16 77822666 77822666 + Silent SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_020927 exon1 c.C87T p.G29G CGGCGGCGGCGAC 21 2 0.10 31 0 0 0 0 SLC7A5 8140 mdanderson.org 37 16 87870225 87870225 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_003486 exon8 c.C1169A p.S390Y TCCTTGGAGAAGG 15 3 0.20 26 0 0 71 0 0.00 VPS9D1 9605 broad.mit.edu;mdanderson.org 37 16 89782892 89782892 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_004913 exon4 c.G409A p.A137T ACTCTGCCCCCTG 68 4 0.06 98 0 0 30 0 0.00 DERL2 51009 broad.mit.edu 37 17 5383846 5383846 + Silent SNP G G T rs143440894 bycluster;by1000genomes;alternate_allele TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . DERL2 NM_016041 exon5 c.C384A p.L128L ATAGACGAGCATT 436 6 0.01 373 0 0 15 230 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 211 15 0.07 167 6 0.0359281437 40 22 0.55 . 0 broad.mit.edu 37 17 16722514 16722514 + RNA SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . GTGAGTGTGGCCA 131 11 0.08 118 0 0 0 0 RBFOX3 146713 broad.mit.edu 37 17 77111769 77111772 + Frame_Shift_Del DEL TACT TACT - novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 TACT TACT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . RBFOX3 NM_001082575 exon5 c.26_29del p.9_10del GGGGGGTACTGGG 6 2 0.33 9 0 0 10 0 0 LAMA1 284217 mdanderson.org 37 18 6950970 6950970 + Missense_Mutation SNP C C A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_005559 exon58 c.G8208T p.K2736N CGAGAGCCTGGGG 20 2 0.10 47 0 0 64 0 0.00 CIDEA 1149 mdanderson.org 37 18 12254390 12254390 + Missense_Mutation SNP C C A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001279 exon1 c.C8A p.A3D TGGAGGCCGCCCG 19 3 0.16 26 0 0 1 0 0.00 ATP4A 495 mdanderson.org 37 19 36050969 36050969 + Missense_Mutation SNP A A T rs2733743 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_000704 exon7 c.T794A p.V265E CCCTGCACGGTGC 47 2 0.04 51 0 0 0 0 WDR62 284403 mdanderson.org 37 19 36577593 36577593 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001083961 exon13 c.G1647T p.L549L AGGGCTGACCTTG 49 3 0.06 48 0 0 12 0 0.00 FCGBP 8857 broad.mit.edu 37 19 40392050 40392050 + Missense_Mutation SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . FCGBP NM_003890 exon17 c.C8336T p.A2779V ACGCAGGCTTGGC 265 4 0.02 284 0 0 416 21 0 0.00 ETHE1 23474 mdanderson.org 37 19 44011048 44011048 + Missense_Mutation SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 ETHE1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 ETHE1 NM_014297 exon7 c.C719T p.A240V GGAACAGCAAAGT 33 3 0.09 30 0 0 0 1 282 0 0.00 RTN2 6253 broad.mit.edu;mdanderson.org 37 19 45992653 45992653 + Missense_Mutation SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 RTN2,caecum,carcinoma,+1,2 RTN2 NM_005619 exon6 c.C1192T p.R398C CTTTGCGGTAAAC 51 3 0.06 46 1 0.0217391304 45 2 56 0 0.00 NT5C1B 93034 broad.mit.edu 37 2 18765888 18765888 + Silent SNP G G C novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . NT5C1B NM_001199087 exon5 c.C846G p.S282S CTGCTCGGACAGA 57 3 0.05 54 1 0.0185185185 72 0 0 APOB 338 mdanderson.org 37 2 21256356 21256356 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_000384 exon9 c.C939A p.T313T GGATTTGGTGCTC 51 3 0.06 47 0 0 0 0 EML6 400954 mdanderson.org 37 2 55194165 55194165 + Silent SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001039753 exon38 c.G5523A p.V1841V CCAGGTGCATGAG 67 4 0.06 84 0 0 4 0 0.00 . 0 bcgsc.ca 37 2 58688601 58688601 + RNA SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . CAGCTCGTACCTT 92 5 0.05 74 0 0 116 1 0.01 C2orf74 339804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 61389989 61389989 + Silent SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001143959 exon2 c.G129A p.R43R AGGCAGGAAAGGT 127 36 0.28 157 0 0 28 3 0.11 SMYD5 10322 ucsc.edu 37 2 73453042 73453042 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . SMYD5 NM_006062 exon13 c.G1225T p.A409S GAAGATGCAGAGC 39 4 0.10 28 0 0 58 53 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89104503 89104504 + RNA INS - - C rs149625899 bycluster;by1000genomes TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . ATTTTTTTCAGAT 15 9 0.60 5 0 0 0 0 . 55041 broad.mit.edu;mdanderson.org 37 2 132110862 132110862 + Silent SNP G G C rs370398581 TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . CGCTCCGGCTCTC 37 9 0.24 42 1 0.0238095238 0 0 LOC150776 0 bcgsc.ca 37 2 132258144 132258144 + RNA SNP C C G novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . CTGTCTCCTACCT 104 8 0.08 102 0 0 5 0 0.00 RRBP1 6238 bcgsc.ca 37 20 17639867 17639867 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . RRBP1 . . . . TTCTTGCCCTGGT 192 12 0.06 167 2 0.0119760479 157 775 46 0.06 SCAND1 51282 mdanderson.org 37 20 34542028 34542028 + Missense_Mutation SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_033630 exon2 c.C368T p.A123V GGGATGGCTTCAG 44 3 0.07 38 0 0 290 0 0.00 MYT1 4661 broad.mit.edu 37 20 62848481 62848482 + Frame_Shift_Ins INS - - C novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . MYT1 NM_004535 exon11 c.1693_1694insC p.A565fs AACGTGGCCCCCG 104 6 0.06 75 0 0 152 0 0 TRAPPC10 7109 broad.mit.edu;mdanderson.org 37 21 45507655 45507655 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . TRAPPC10 NM_003274 exon17 c.C2615T p.A872V CGCCTGCGTACCA 77 4 0.05 51 0 0 109 22 0 0.00 ADORA2A 135 bcgsc.ca 37 22 24837218 24837218 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . ADORA2A NM_000675 exon3 c.G1000T p.V334F GAGCAGGTCAGCC 44 4 0.09 43 0 0 44 66 0 0.00 . 0 broad.mit.edu 37 22 34492089 34492090 + RNA INS - - T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . CTTGCTGTTTTTT 7 3 0.43 13 0 0 0 0 MYH9 4627 mdanderson.org 37 22 36745272 36745272 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_002473 exon2 c.C10A p.Q4K CAGCTTGCTGTGC 37 3 0.08 50 0 0 34 0 0.00 PIM3 415116 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 50355011 50355011 + Missense_Mutation SNP A A G novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001001852 exon3 c.A241G p.S81G TGGGGCAGCCTGG 116 20 0.17 115 0 0 12 5 0.42 RAF1 5894 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 12641718 12641718 + Missense_Mutation SNP G G A rs5746220 bycluster;byfrequency;byhapmap;by1000genomes TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_002880 exon9 c.C923T p.P308L GTTTTCGGCTGTG 143 36 0.25 114 0 0 0.009 142 39 0.27 IP6K2 51447 mdanderson.org 37 3 48727074 48727074 + Missense_Mutation SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_016291 exon5 c.G677A p.R226Q TGTTGTCGTGTGC 74 4 0.05 63 0 0 386 0 0.00 PCDH10 57575 hgsc.bcm.edu;mdanderson.org 37 4 134072954 134072954 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 PCDH10,NS,carcinoma,+2,1 PCDH10 NM_032961 exon1 c.G1659T p.A553A CCAGGCGCTGGCT 46 3 0.07 80 0 0 2 1 5 0 0.00 TMEM144 55314 mdanderson.org 37 4 159161570 159161570 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_018342 exon10 c.G802T p.G268X CTACCAGGTAAGA 55 3 0.05 67 0 0 5 0 0.00 NEK1 4750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 170345935 170345935 + Missense_Mutation SNP A A C novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001199397 exon31 c.T2991G p.D997E CTGAGAATCATTG 93 9 0.10 86 0 0 6 1 0.17 C5orf60 285679 mdanderson.org 37 5 179069468 179069468 + Missense_Mutation SNP A A T rs62405726 bycluster;byfrequency;alternate_allele TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 C5orf60,caecum,carcinoma,+1,1 C5orf60 NM_001142306 exon5 c.T706A p.W236R GCCTCCACCTGCC 54 3 0.06 60 0 0 1 1 0 0 HLA-A 3105 hgsc.bcm.edu 37 6 29911272 29911272 + Missense_Mutation SNP T T A rs76185201 bycluster;byfrequency;by1000genomes TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 HLA-A,colon,carcinoma,0,1 HLA-A NM_001242758 exon3 c.T571A p.W191R GTGGAGTGGCTCC 90 6 0.07 67 1 0.0149253731 0.001 0 1 1252 0 0.00 TMEM30A 55754 mdanderson.org 37 6 75994279 75994279 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001143958 exon1 c.C76A p.R26R GTCTCCGAGTCTT 42 3 0.07 34 0 0 13 0 0.00 SF3B5 83443 ucsc.edu 37 6 144416537 144416537 + Missense_Mutation SNP A A C rs199548273 bycluster;byfrequency TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . SF3B5 NM_031287 exon1 c.T98G p.V33G TGGTTCACCAGCC 94 21 0.22 96 18 0.1875 6 652 107 0.16 AKAP12 9590 mdanderson.org 37 6 151673962 151673962 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_005100 exon4 c.G4436T p.C1479F CCGACTGTCAGGC 29 3 0.10 31 0 0 143 0 0.00 UNC93A 54346 ucsc.edu 37 6 167728900 167728901 + Missense_Mutation DNP TC TC CG novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 TC TC Unknown Untested Somatic WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 UNC93A,ear,carcinoma,+1,2 UNC93A NM_018974 exon8 c.C1335G p.V445A GACAGGTCAACCA 43 5 0.12 69 8 0.115942029 66 2 3 0 0.00 NACAD 23148 broad.mit.edu 37 7 45123805 45123805 + Silent SNP C C T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . NACAD NM_001146334 exon2 c.G1974A p.K658K CACAGGCTTTGGG 8 4 0.50 12 0 0 44 20 3 0.15 CDK14 5218 mdanderson.org 37 7 90741978 90741978 + Silent SNP C C T rs200612683 by1000genomes;alternate_allele TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_012395 exon12 c.C1222T p.L408L CCACGGCTATGGG 38 3 0.08 49 0 0 11 0 0.00 TRIP6 7205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 100466178 100466178 + Nonsense_Mutation SNP C C A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_003302 exon4 c.C425A p.S142X CAGCCTCGCCGCT 65 19 0.29 54 0 0 184 12 0.07 RELN 5649 mdanderson.org 37 7 103191524 103191524 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_005045 exon41 c.C6292A p.H2098N AAAGGTGCAGCTT 37 3 0.08 40 0 0 0 0 PUS7 54517 ucsc.edu 37 7 105098245 105098245 + Missense_Mutation SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . PUS7 NM_019042 exon16 c.C1978T p.L660F AGCGAAGCCAGGT 73 1 0.01 78 0 0 59 31 4 0.13 MLL3 58508 bcgsc.ca;mdanderson.org 37 7 151962128 151962128 + Silent SNP G G A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . MLL3 NM_170606 exon8 c.C1179T p.N393N CTTGCAGTTCTGG 103 7 0.07 103 2 0.0194174757 1564 3 0 0.00 CSMD1 64478 hgsc.bcm.edu 37 8 3226879 3226879 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_033225 exon19 c.C2796A p.G932G GATGTAGCCTCCA 106 5 0.05 75 0 0 0 0 EYA1 2138 mdanderson.org 37 8 72111599 72111599 + Missense_Mutation SNP A A T rs10103397 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_000503 exon18 c.T1755A p.H585Q CAAGGCATGGTGC 51 3 0.06 25 0 0 4 0 0.00 COL22A1 169044 mdanderson.org 37 8 139712365 139712365 + Missense_Mutation SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_152888 exon32 c.C2582A p.P861Q ATCCGTGGATGTG 13 2 0.15 32 0 0 3 0 0.00 PYCRL 65263 mdanderson.org 37 8 144687882 144687882 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_023078 exon6 c.C849A p.L283L TCTGCTGAGCTCC 42 3 0.07 41 0 0 17 0 0.00 ADCK5 203054 mdanderson.org 37 8 145617338 145617338 + Silent SNP G G T novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_174922 exon11 c.G1143T p.L381L GCTGCTGGACCAC 46 3 0.07 37 0 0 26 0 0.00 . 0 bcgsc.ca 37 9 90805040 90805040 + RNA SNP C C A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . GTGATCCTCAGTA 27 4 0.15 28 0 0 0 0 DAB2IP 153090 mdanderson.org 37 9 124535377 124535377 + Missense_Mutation SNP T T A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_032552 exon12 c.T2486A p.L829Q GCTCCCTGAGCTC 30 3 0.10 39 0 0 12 0 0.00 CEL 1056 hgsc.bcm.edu 37 9 135947115 135947116 + Missense_Mutation DNP CA CA TG novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001807 exon11 c.A2236G p.K746E TGACTCCAAGGAA 73 11 0.15 53 0 0 8 0 0.00 DBH 1621 mdanderson.org 37 9 136501645 136501645 + Missense_Mutation SNP T T C novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_000787 exon1 c.T152C p.I51T ATCACATCCCCCT 47 4 0.09 42 0 0 0 0 IRAK1 3654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153278098 153278098 + Silent SNP C C G novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . NM_001569 exon13 c.G1962C p.S654S CTCTGACGACGAT 89 23 0.26 74 0 0 122 27 0.22 PLCD3 113026 mdanderson.org 37 17 43195379 43195379 + Silent SNP C C A novel TCGA-2G-AAGF-01A-31D-A42Y-10 TCGA-2G-AAGF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2e4da33-fde9-4047-a136-495d4b15ab5e f883c62a-90a5-4801-a223-3315d37bc801 . . . . . . GTCGCGCACGGCT 45 3 0.07 48 0 0 46 0 0.00