Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
DDX11L1	0	broad.mit.edu	37	1	13550	13550	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	TGTCATGGGCCTG		29	8	0.28	17	0	0				1	0	0.00			
TTLL10	254173	mdanderson.org	37	1	1132855	1132855	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001130045	exon16	c.C1650T	p.G550G	GCGCGGCCAGAAG		41	3	0.07	51	0	0				0	0				
PRAMEF4	400735	ucsc.edu	37	1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	rs77146569	byfrequency	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	PRAMEF4	NM_001009611	exon4	c.T898G	p.F300V	TGAGGAACTTTAA		38	7	0.18	25	6	0.24		62		6	0	0.00			
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23763530	23763530	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_017707	exon15	c.G1350T	p.T450T	GAGCCACGTGGGG		98	26	0.27	69	0	0				27	13	0.48			
RCC1	1104	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	28857097	28857097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	RCC1	NM_001048194	exon3	c.C136T	p.P46S	TGCGGGCCGAGCC		25	5	0.20	22	0	0		61		2	0	0.00			
FAM73A	374986	broad.mit.edu	37	1	78245408	78245408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	FAM73A	NM_198549	exon1	c.G68T	p.G23V	TACCTGGCCTGGA		80	9	0.11	70	1	0.0142857143		56		9	0	0.00			
IGSF3	3321	mdanderson.org	37	1	117150780	117150780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001542	exon5	c.C1006A	p.L336I	TGTTGAGGACAGG		133	5	0.04	138	0	0				22	0	0.00			
COLGALT2	23127	broad.mit.edu	37	1	183933106	183933106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_015101	exon6	c.T881C	p.I294T	AGGGGGATGGGCA		183	5	0.03	143	0	0				2	0	0.00			
TRIM67	440730	mdanderson.org	37	1	231299311	231299311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001004342	exon1	c.C596A	p.T199K	CGGGGACGTCTGC		23	3	0.13	10	0	0				0	0				
IRF2BP2	359948	mdanderson.org	37	1	234745193	234745193	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_182972	exon1	c.C48A	p.C16X	CAGGTAGCACGAC		41	3	0.07	40	0	0				28	0	0.00			
ZNF496	84838	broad.mit.edu	37	1	247492680	247492680	+	Silent	SNP	G	G	A	rs140768491	bycluster	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	ZNF496	NM_032752	exon3	c.C201T	p.C67C	GCCCCCGCACAGG		134	4	0.03	101	1	0.0099009901		80		31	0	0.00			
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	60560687	60560687	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	BICC1,colon,carcinoma,+1,2	BICC1	NM_001080512	exon14	c.A1896G	p.R632R	GCCTCGAAGTCCT		102	33	0.32	145	0	0		1	2	7	6	0.86			
PALD1	27143	broad.mit.edu	37	10	72293719	72293719	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014431	exon8	c.T912C	p.P304P	CGGGCCTCCCCCA		94	3	0.03	124	0	0				16	0	0.00			
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	MUC5B	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG		61	9	0.15	157	2	0.0127388535		473		0	0				
TNNT3	7140	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	1955860	1955860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_006757	exon13	c.G565T	p.D189Y	AACATCGATCACC		105	5	0.05	80	0	0				9	0	0.00			
ABCC8	6833	mdanderson.org	37	11	17482169	17482169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_000352	exon6	c.C877A	p.H293N	AGGCATGGCTGAG		40	3	0.08	49	0	0				0	0				
VPS37C	55048	mdanderson.org	37	11	60901649	60901649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_017966	exon3	c.G124A	p.A42T	CCAGTGCCATCTC		51	3	0.06	53	0	0				54	0	0.00			
MARK2	2011	broad.mit.edu;mdanderson.org	37	11	63667568	63667568	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	MARK2	NM_001163296	exon8	c.G754T	p.G252X	TTTGATGGACAGA		112	5	0.04	98	0	0		91		47	0	0.00			
TM7SF2	7108	broad.mit.edu	37	11	64880133	64880133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TM7SF2	NM_003273	exon2	c.C199T	p.L67F	CTGTGGCTCGCCT		19	2	0.11	22	0	0		30		0	0				
PC	5091	mdanderson.org	37	11	66639224	66639224	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_022172	exon3	c.C255A	p.L85L	GCCGATGAGATAG		42	3	0.07	41	0	0				10	0	0.00			
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CAGGGCACTGCCC		118	8	0.07	74	1	0.0135135135				65	0	0.00			
ACAT1	38	broad.mit.edu	37	11	108018054	108018054	+	Silent	SNP	C	C	T	rs367713788		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	ACAT1,caecum,carcinoma,+1,1	ACAT1	NM_000019	exon12	c.C1221T	p.Y407Y	AGAATACGGTCTT		111	3	0.03	93	1	0.0107526882		35	1	80	0	0.00			
APLP2	334	broad.mit.edu	37	11	129999082	129999082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	APLP2	NM_001243299	exon10	c.T1466G	p.L489W	CTGCCTTGCAGTC		66	5	0.08	88	1	0.0113636364		71		508	0	0.00			
TAS2R43	259289	ucsc.edu;bcgsc.ca	37	12	11244616	11244616	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TAS2R43	NM_176884	exon1	c.G213C	p.L71F	TGGATTCAACACA		562	313	0.56	121	2	0.0165289256		19		0	0				
H1FNT	341567	mdanderson.org	37	12	48723627	48723627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_181788	exon1	c.A553G	p.R185G	AATGCCAGGGCGA		58	3	0.05	39	0	0				0	0				
FAM186A	121006	broad.mit.edu	37	12	50746972	50746972	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	FAM186A	NM_001145475	exon4	c.T3643C	p.L1215L	TCCCCAATTCCTG		128	6	0.05	98	1	0.0102040816		181		0	0				
RPH3A	22895	broad.mit.edu	37	12	113319619	113319619	+	Missense_Mutation	SNP	G	G	T	rs368476874	alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	RPH3A	NM_001143854	exon15	c.G1294T	p.V432F	CCCTACGTTAAGC		108	4	0.04	96	1	0.0104166667		98		0	0				
NCOR2	9612	ucsc.edu	37	12	124887067	124887067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOR2	NM_006312	exon16	c.A1523C	p.Q508P	TGCTGCTGCTGCT		77	5	0.06	53	0	0		475		49	1	0.02			
NCOR2	9612	broad.mit.edu;mdanderson.org	37	12	124887070	124887070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOR2	NM_006312	exon16	c.A1520C	p.Q507P	TGCTGCTGCTGCT		78	4	0.05	56	0	0		475		52	0	0.00			
NCOR2	9612	ucsc.edu	37	12	124887073	124887073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOR2	NM_006312	exon16	c.A1517C	p.Q506P	TGCTGCTGCTGCT		77	7	0.09	50	1	0.02		475		49	7	0.14			
LATS2	26524	broad.mit.edu	37	13	21562482	21562483	+	In_Frame_Ins	INS	-	-	GGGGCG	rs10658032		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	LATS2	NM_014572	exon4	c.1437_1438insCGCCCC	p.P479delinsPAP	CGCAGCCGGGGCG		8	3	0.38	3	0	0		176		1	0	0.00			
ACIN1	22985	hgsc.bcm.edu;mdanderson.org	37	14	23549896	23549896	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001164814	exon6	c.G822A	p.E274E	CTCCTCCTCTTCT		105	5	0.05	103	0	0				34	0	0.00			
MYH7	4625	hgsc.bcm.edu;broad.mit.edu	37	14	23885334	23885334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	MYH7,NS,carcinoma,0,1	MYH7	NM_000257	exon34	c.C4832T	p.A1611V	CTCAGGGCCTCGT		119	6	0.05	123	1	0.0081300813		0	1	0	0				
DHRS4L1	728635	broad.mit.edu;mdanderson.org	37	14	24507059	24507059	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001082488	exon2	c.A236G	p.E79G	AGGGGGAGGGGCT		143	5	0.03	135	1	0.0074074074				1	0	0.00			
UNC79	57578	broad.mit.edu	37	14	94060039	94060039	+	Missense_Mutation	SNP	G	G	A	rs370246949	bycluster	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	UNC79	NM_020818	exon23	c.G2515A	p.V839I	AGGGTCGTCAAAT		223	4	0.02	194	2	0.0103092784		366		0	0				
RNU6-28	100873756	hgsc.bcm.edu	37	15	43677978	43677978	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	ACTCTTTCCTTGA		140	29	0.21	100	0	0				0	0				
TUBGCP4	27229	mdanderson.org	37	15	43678501	43678501	+	Silent	SNP	G	G	T	rs372242208	alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014444	exon9	c.G987T	p.V329V	GGTGGTGGATCGC		107	4	0.04	61	0	0				24	0	0.00			
DET1	55070	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89056263	89056263	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	DET1	NM_017996	exon6	c.T1605C	p.P535P	CTCAAAAGGGTGA		175	6	0.03	151	1	0.0066225166		55		22	0	0.00			
SLCO3A1	28232	mdanderson.org	37	15	92459545	92459545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	SLCO3A1,NS,malignant_melanoma,0,1	SLCO3A1	NM_013272	exon2	c.G503T	p.R168L	TCTGCCGCAACCG		58	3	0.05	50	0	0		0	1	6	0	0.00			
SOLH	6650	mdanderson.org	37	16	597600	597600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_005632	exon4	c.G762T	p.Q254H	CCCCCAGCTGCAG		19	2	0.11	15	0	0				28	0	0.00			
CCDC154	645811	mdanderson.org	37	16	1488104	1488104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001143980	exon10	c.G1099A	p.A367T	GCTGTGCGGCCTC		51	3	0.06	70	0	0				1	0	0.00			
SRRM2	23524	mdanderson.org	37	16	2817298	2817298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_016333	exon11	c.G6769T	p.A2257S	AACCTGGCTGACT		64	9	0.14	49	3	0.0612244898				428	14	0.03			
CMTM2	146225	broad.mit.edu	37	16	66621965	66621965	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	CMTM2,trunk,malignant_melanoma,+2,2	CMTM2	NM_144673	exon4	c.A690C	p.E230D	ACCAGAACCCGCC		91	17	0.19	64	13	0.203125		33	2	2	0	0.00			
THAP11	57215	broad.mit.edu	37	16	67876781	67876781	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	THAP11	NM_020457	exon1	c.G324A	p.Q108Q	GCAACAGCAGCAG		67	3	0.04	41	1	0.0243902439		27		60	0	0.00			
ARRB2	409	broad.mit.edu	37	17	4619841	4619841	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	ARRB2	NM_001257329	exon5	c.A295C	p.T99P	CCCCCCACCCGCC		48	8	0.17	27	2	0.0740740741		30		30	0	0.00			
PITPNM3	83394	mdanderson.org	37	17	6381975	6381975	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_031220	exon7	c.C669A	p.A223A	GGAGATGGCCAAC		58	3	0.05	64	0	0				3	0	0.00			
CCDC144B	284047	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	18528523	18528523	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CAAGATCTTCCAG		231	67	0.29	169	0	0				2	0	0.00			
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29527570	29527570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001128147	exon9	c.C1019G	p.S340C	ATAACTCTGTCAT		78	21	0.27	59	0	0				3	2	0.67			
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45376796	45376796	+	Missense_Mutation	SNP	G	G	A	rs144884023		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_000212	exon11	c.G1813A	p.G605S	GGCCGCGGCAAGT		143	37	0.26	105	0	0	0			1	0	0.00			
SLC16A6	9120	broad.mit.edu	37	17	66270087	66270087	+	Silent	SNP	G	G	T	rs201209320	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	SLC16A6	NM_001174166	exon4	c.C357A	p.V119V	GATGGCGACGTAC		120	4	0.03	101	0	0		56		2	0	0.00			
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73484174	73484174	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014738	exon6	c.A571T	p.R191W	GCTTTGAGGCCTG		147	41	0.28	104	0	0				27	7	0.26			
ZBTB7C	201501	mdanderson.org	37	18	45555801	45555801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001039360	exon3	c.C1690A	p.L564M	CCTCCAGCTGCGC		20	3	0.15	20	0	0				0	0				
CSNK1G2	1455	broad.mit.edu	37	19	1969878	1969878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	CSNK1G2	NM_001319	exon2	c.G107T	p.S36I	GGACCAGCTCGGG		34	3	0.09	39	1	0.0256410256		28		29	0	0.00			
TMPRSS9	360200	mdanderson.org	37	19	2424093	2424093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_182973	exon14	c.G2453T	p.G818V	ACTGTGGCCTGGC		20	2	0.10	15	0	0				0	0				
LRP3	4037	mdanderson.org	37	19	33698411	33698411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_002333	exon7	c.G2243T	p.C748F	GGGTCTGCAGGAA		18	2	0.11	23	0	0				55	0	0.00			
LOC100128682	0	broad.mit.edu	37	19	35898758	35898758	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CGGTCACCACCTT		6	2	0.33	4	0	0				0	0				
ETV2	2116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36134398	36134398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014209	exon5	c.G458A	p.S153N	ACACCAGCTGGGA		105	8	0.08	90	0	0				0	0				
MLL4	8085	mdanderson.org	37	19	36213935	36213935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014727	exon6	c.C2761T	p.R921W	CCGTCACGGTCCC		51	3	0.06	47	0	0				36	0	0.00			
RYR1	6261	mdanderson.org	37	19	38956756	38956756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001042723	exon24	c.C2896A	p.P966T	TACAAGCCGGCTC		24	3	0.13	34	0	0				2	0	0.00			
SUPT5H	6829	mdanderson.org	37	19	39964105	39964105	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001111020	exon25	c.C2436T	p.S812S	TGGCAGCCGCACT		43	3	0.07	44	0	0				180	0	0.00			
ZNF285	26974	bcgsc.ca	37	19	44892228	44892228	+	Missense_Mutation	SNP	G	G	C	rs117953191	bycluster;byfrequency	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	ZNF285	NM_152354	exon4	c.C179G	p.A60G	CCCTTTGCCTGAA		197	18	0.09	151	5	0.0331125828		86		3	0	0.00			
BRSK1	84446	mdanderson.org	37	19	55817676	55817676	+	Missense_Mutation	SNP	G	G	T	rs12973169	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_032430	exon17	c.G1947T	p.K649N	GTACAAGGCCAGT		94	4	0.04	112	0	0				3	0	0.00			
COX7A2L	9167	broad.mit.edu	37	2	42578366	42578366	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	COX7A2L	NM_004718	exon3	c.338delA	p.N113fs	CATTTGTTTTTGG		558	7	0.01	409	0	0		8		315	0	0.00			
EIF5B	9669	broad.mit.edu	37	2	99977964	99977965	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	EIF5B	NM_015904	exon4	c.600_601insA	p.Q200fs	AGGACAGAAAAAA		307	0	0.00	196	0	0		95		108	0	0.00			
JPH2	57158	mdanderson.org	37	20	42788847	42788847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_020433	exon2	c.G580A	p.A194T	GGATGGCGGGCGA		16	2	0.13	9	0	0				0	0				
NEURL2	140825	broad.mit.edu	37	20	44519365	44519365	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NEURL2	.	.	.	.	GCGGGGTCCAGCG		119	17	0.14	81	10	0.1234567901		14		4	1	0.25			
PRPF6	24148	mdanderson.org	37	20	62657364	62657364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_012469	exon15	c.G1981T	p.A661S	GAGCGGGCCCGGA		32	3	0.09	40	0	0				276	0	0.00			
PRMT2	3275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	48071767	48071767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001242865	exon7	c.G704A	p.G235D	CGTCTGGCCCTCT		170	34	0.20	143	0	0				1	0	0.00			
.	0	broad.mit.edu	37	22	18846098	18846098	+	RNA	SNP	G	G	A	rs9306211	bycluster;byfrequency	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CTCGGCGCTCGAT		156	11	0.07	159	1	0.0062893082				4	0	0.00			
.	0	broad.mit.edu	37	22	18846121	18846121	+	RNA	SNP	C	C	T	rs4302302	bycluster;byfrequency	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CACTGGCGCACGA		124	9	0.07	113	0	0				4	0	0.00			
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29622540	29622540	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_133455	exon5	c.G465C	p.K155N	GGCCAAGGTGGGT		38	17	0.45	54	0	0				4	0	0.00			
MAPK11	5600	mdanderson.org	37	22	50708640	50708640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_002751	exon1	c.C82T	p.R28C	CCGGGCGCAGCCC		20	3	0.15	16	0	0				4	0	0.00			
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113098310	113098310	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	WDR52,NS,carcinoma,+1,1	WDR52	NM_001164496	exon17	c.T2141A	p.M714K	TCTCCCATCTCTG		174	73	0.42	153	0	0		1	1	0	0				
CNBP	7555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	128889947	128889948	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	CNBP	NM_001127192	exon4	c.397_398insA	p.D133fs	TGCAGTCTTTTTG		51	20	0.39	43	0	0		12		807	0	0.00			
NPHP3-ACAD11	0	hgsc.bcm.edu	37	3	132321819	132321819	+	RNA	SNP	G	G	T	rs111404721	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	ATTTTTGTATTTT		7	6	0.86	6	0	0	0.005			0	0				
STX18	53407	mdanderson.org	37	4	4421779	4421779	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_016930	exon11	c.C990A	p.L330L	CCAGTCGAGGAAG		51	3	0.06	83	0	0				84	0	0.00			
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	141545359	141545359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_015130	exon20	c.T2989A	p.S997T	CTTGGGAATTTGC		166	8	0.05	168	0	0				9	0	0.00			
ARL15	54622	mdanderson.org	37	5	53182448	53182448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_019087	exon5	c.C558A	p.S186R	AGAGAAGCTGTCT		98	5	0.05	83	0	0				9	0	0.00			
PCDHA1	56147	mdanderson.org	37	5	140167609	140167609	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_018900	exon1	c.T1734C	p.S578S	AGTCAGTGAGCTG		47	3	0.06	44	0	0				1	0	0.00			
LOC728554	0	broad.mit.edu	37	5	177303216	177303218	+	RNA	DEL	GTG	GTG	-	rs72347473	alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	GTG	GTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	GGGGCTGTGGTGG		6	2	0.33	8	0	0				0	0				
ADAMTS2	9509	mdanderson.org	37	5	178567021	178567021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014244	exon11	c.C1645A	p.H549N	TGCAGTGTCCTTT		41	3	0.07	61	0	0				5	0	0.00			
E2F3	1871	mdanderson.org	37	6	20402610	20402610	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001949	exon1	c.C147T	p.A49A	CGCCGCCGCTGCC		27	2	0.07	30	1	0.0333333333				0	0				
POM121L2	94026	broad.mit.edu	37	6	27278969	27278969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	POM121L2	NM_033482	exon1	c.C981A	p.S327R	CTCAGGGCTAGAC		109	4	0.04	96	0	0		61		1	0	0.00			
TMEM63B	55362	broad.mit.edu;mdanderson.org	37	6	44107208	44107208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TMEM63B	NM_018426	exon7	c.G412T	p.D138Y	AGGGATGATGAGA		129	5	0.04	116	0	0		77		35	0	0.00			
.	667	broad.mit.edu	37	6	56707935	56707935	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	GAGGTAACCCGCC		119	18	0.15	105	10	0.0952380952				1	0	0.00			
MAP3K7	6885	mdanderson.org	37	6	91278326	91278326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	MAP3K7_ENST00000369329,caecum,carcinoma,-1,5	MAP3K7_ENST00000369329	NM_145333	exon3	c.G248A	p.R83H	TTCACACGGGATA		64	4	0.06	49	0	0		-1	5	30	0	0.00			
NCOA7	135112	broad.mit.edu	37	6	126210954	126210954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOA7	NM_001199619	exon10	c.A1754G	p.K585R	TGAAAAAGGGAGA		108	4	0.04	118	0	0		92		6	0	0.00			
REPS1	85021	broad.mit.edu	37	6	139266690	139266690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	REPS1,right_lower_lobe,carcinoma,0,1	REPS1	NM_001128617	exon3	c.A422G	p.K141R	GATCCCTTTTTCA		204	5	0.02	181	0	0		58	1	58	0	0.00			
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158449830	158449830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_003898	exon3	c.C257T	p.T86I	GCTGCACATCTGT		119	13	0.11	115	0	0				8	1	0.13			
TCP1	6950	broad.mit.edu	37	6	160210470	160210470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TCP1	NM_030752	exon1	c.C31A	p.R11S	TGCTGCGGTCACC		305	6	0.02	263	0	0		37		504	0	0.00			
TNRC18	84629	mdanderson.org	37	7	5428730	5428730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001080495	exon5	c.C725T	p.T242I	TCCTGGGTCAGGT		24	2	0.08	11	0	0				11	0	0.00			
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33388730	33388730	+	Silent	SNP	C	C	T	rs376024532		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014451	exon13	c.C1380T	p.Y460Y	AGTCTACGTGCAA		455	99	0.22	276	0	0				16	1	0.06			
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45122754	45122754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	NACAD,NS,carcinoma,+2,1	NACAD	NM_001146334	exon2	c.G3025T	p.A1009S	TCCCAGCTTCTGC		116	27	0.23	76	0	0		2	1	24	6	0.25			
ASL	435	mdanderson.org	37	7	65552333	65552333	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001024943	exon8	c.A615G	p.A205A	CATTGCAGGCAAT		39	4	0.10	25	0	0				48	0	0.00			
PHTF2	57157	broad.mit.edu	37	7	77567055	77567055	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	PHTF2	NM_001127357	exon11	c.A1265C	p.H422P	GTTCCCACCCAGG		441	15	0.03	214	4	0.0186915888		104		56	1	0.02			
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82595343	82595343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014510	exon4	c.C3761T	p.T1254I	GCTGATGTTTTTG		430	86	0.20	267	0	0				1	0	0.00			
GIGYF1	64599	mdanderson.org	37	7	100279588	100279588	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_022574	exon23	c.A2954T	p.Q985L	GCCGTCTGCAGCG		44	3	0.07	27	0	0				164	0	0.00			
EPHB4	2050	broad.mit.edu	37	7	100420018	100420018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	EPHB4	NM_004444	exon4	c.T683C	p.V228A	GCGGGGACGGCAT		138	32	0.23	84	13	0.1547619048		106		172	8	0.05			
COL26A1	136227	broad.mit.edu	37	7	101190504	101190504	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CCGGGGTCCCCCT		236	36	0.15	181	18	0.0994475138				51	1	0.02			
LAMB4	22798	broad.mit.edu	37	7	107703251	107703251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	LAMB4	NM_007356	exon23	c.C3250A	p.P1084T	TCCTAGGGTCACA		270	6	0.02	153	0	0		253		1	0	0.00			
EPHB6	0	broad.mit.edu	37	7	142561026	142561027	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	EPHB6	NM_004445	exon5	c.41_42insG	p.A14fs	GAGTGGCGGGCAT		207	6	0.03	158	0	0		168		7	0	0.00			
MLL3	58508	broad.mit.edu	37	7	151873927	151873927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	MLL3	NM_170606	exon38	c.C8611A	p.H2871N	AAGGATGCAAAGA		166	4	0.02	114	0	0		1564		11	0	0.00			
CSPP1	79848	broad.mit.edu	37	8	68049789	68049789	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	CSPP1	NM_024790	exon15	c.1911delA	p.G637fs	CTGGGGAAAAGGT		885	7	0.01	287	0	0		129		49	0	0.00			
SLC26A7	115111	broad.mit.edu	37	8	92261932	92261932	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	SLC26A7	NM_134266	exon2	c.53delC	p.T18fs	TGCATACCCCCCA		356	7	0.02	118	0	0		207		1	0	0.00			
PPP1R16A	84988	mdanderson.org	37	8	145727188	145727188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_032902	exon10	c.T1489A	p.C497S	CCTGACTGTGGCT		51	3	0.06	52	0	0				52	0	0.00			
GALT	2592	broad.mit.edu	37	9	34649411	34649411	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	GALT	NM_000155	exon10	c.T909C	p.A303A	AGGGGCTCCCACA		78	7	0.09	68	1	0.0147058824		29		46	0	0.00			
FAM205A	259308	broad.mit.edu;mdanderson.org	37	9	34725432	34725432	+	Missense_Mutation	SNP	C	C	T	rs77610593	bycluster;by1000genomes	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	FAM205A	NM_001141917	exon4	c.G1805A	p.R602H	CGATGGCGAATCA		32	6	0.19	199	0	0		45		0	0				
TESK1	7016	broad.mit.edu	37	9	35609179	35609179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	TESK1,NS,carcinoma,0,1	TESK1	NM_006285	exon10	c.T1321C	p.S441P	CCCTCATCCCCCG		65	18	0.28	77	13	0.1688311688		46	1	49	6	0.12			
GBA2	57704	mdanderson.org	37	9	35741872	35741872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_020944	exon4	c.C583T	p.R195C	CCCGACGCAGGCA		53	3	0.06	48	0	0				15	0	0.00			
LRSAM1	90678	broad.mit.edu	37	9	130216851	130216851	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	LRSAM1,NS,malignant_melanoma,+2,1	LRSAM1	NM_001005373	exon3	c.G45T	p.R15R	GGCTCGGAAACGC		205	6	0.03	178	1	0.0056179775		40	1	5	0	0.00			
C9orf62	157927	mdanderson.org	37	9	138236031	138236031	+	Silent	SNP	A	A	T	rs914398	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_173520	exon2	c.A237T	p.P79P	ACGCCCAGTCCTG		40	3	0.08	32	0	0				0	0				
EHMT1	79813	broad.mit.edu	37	9	140637837	140637837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	EHMT1_ENST00000460843,NS,carcinoma,0,6	EHMT1	NM_001145527	exon5	c.G838T	p.V280F	CCTTTTGTTTTAG		23	11	0.48	46	9	0.1956521739		196	6	45	0	0.00			
PCYT1B	9468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24665186	24665186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_004845	exon1	c.G37A	p.G13S	GGATACCTGTTTC		177	74	0.42	91	0	0				2	0	0.00			
ARX	170302	mdanderson.org	37	X	25025374	25025374	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_139058	exon4	c.C1302T	p.A434A	GGCGGCGGCAGCG		20	2	0.10	14	0	0				4	0	0.00			
BCYRN1	618	hgsc.bcm.edu	37	X	70640921	70640921	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	TACTACTGTGTGT		16	5	0.31	10	0	0				0	0				
MAGEC1	9947	broad.mit.edu	37	X	140995247	140995247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	MAGEC1	NM_005462	exon4	c.A2057G	p.E686G	AGGGGGAGGATTC		236	6	0.03	150	2	0.0133333333		317		0	0				
MAGEA10	4109	hgsc.bcm.edu	37	X	151303919	151303919	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001011543	exon5	c.C174T	p.S58S	GGAGGAGGAAGAG		98	4	0.04	56	0	0				0	0				
PNMA3	29944	broad.mit.edu	37	X	152226011	152226011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	PNMA3	NM_013364	exon2	c.A599G	p.E200G	AGGGGGAAAAGAG		74	17	0.23	28	4	0.1428571429		81		2	0	0.00			
USP9Y	8287	mdanderson.org	37	Y	14952390	14952390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_004654	exon36	c.C5938T	p.H1980Y	AGACCCCATCAGA		50	4	0.08	48	0	0				5	0	0.00			
MAPK8IP2	23542	mdanderson.org	37	22	51041788	51041788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	AGGAGGAGGGAGA		46	3	0.07	35	0	0				3	0	0.00