Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PRAMEF2 65122 broad.mit.edu 37 1 12919840 12919840 + Missense_Mutation SNP T T C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 PRAMEF2,NS,carcinoma,0,1 PRAMEF2 NM_023014 exon3 c.T580C p.Y194H ATTAAATATCTCA 95 3 0.03 104 1 0.0096153846 85 1 1 0 0.00 . 0 bcgsc.ca 37 1 27527650 27527650 + RNA SNP T T A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . GAAGGATGGCTCT 56 12 0.21 73 0 0 298 0 0.00 GMEB1 10691 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 29016676 29016676 + Missense_Mutation SNP A A G novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . GMEB1 NM_006582 exon3 c.A219G p.I73M CACGATACACAAA 127 12 0.09 147 0 0 28 21 5 0.24 COL16A1 1307 mdanderson.org 37 1 32156172 32156172 + Silent SNP G G A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001856 exon21 c.C1440T p.G480G CGAGCTGCCCTGT 50 3 0.06 75 0 0 28 0 0.00 SLC9C2 284525 mdanderson.org 37 1 173556912 173556912 + Missense_Mutation SNP C C T rs147559775 bycluster;by1000genomes TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_178527 exon5 c.G415A p.V139I TTATAACGACATA 50 3 0.06 78 0 0 0 0 0 SLC35F3 148641 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 234040876 234040876 + Missense_Mutation SNP T T C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_173508 exon1 c.T53C p.V18A TTGCCGTGTGAGT 35 8 0.23 40 0 0 0 0 C10orf114 399726 mdanderson.org 37 10 21784697 21784697 + Silent SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001010911 exon2 c.C243A p.R81R AGGGCTGCGGGTT 21 2 0.10 26 0 0 0 0 HSD17B7P2 0 broad.mit.edu 37 10 38652034 38652035 + RNA INS - - TT novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . TTAACTCTTTTTT 5 2 0.40 4 0 0 0 0 HOGA1 112817 mdanderson.org 37 10 99359464 99359464 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_138413 exon4 c.G496T p.V166L CCTGTGGTGCTGT 46 3 0.07 77 0 0 0 0 KCNQ1 3784 mdanderson.org 37 11 2591884 2591884 + Silent SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_000218 exon3 c.G504T p.G168G CTTCGGGACGGAG 34 3 0.09 30 0 0 4 0 0.00 LRP4 4038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46898070 46898070 + Silent SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_002334 exon25 c.G3483A p.L1161L CCACACCAACACT 69 14 0.20 101 0 0 33 8 0.24 TMX2-CTNND1 100528016 hgsc.bcm.edu 37 11 57509552 57509552 + RNA SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . GGGTTCCGAAGTA 81 20 0.25 81 0 0 3 1 0.33 EHBP1L1 254102 mdanderson.org 37 11 65349378 65349378 + Missense_Mutation SNP C C A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001099409 exon9 c.C1235A p.A412D TCAGAGCTGGGGA 37 3 0.08 52 0 0 23 0 0.00 ARAP1 116985 mdanderson.org 37 11 72425304 72425304 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001040118 exon4 c.C572A p.S191Y TCCTCAGACTGTG 29 3 0.10 33 0 0 20 0 0.00 CEP164 22897 mdanderson.org 37 11 117267810 117267810 + Silent SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001271933 exon26 c.G3291T p.L1097L CAGCCTGTCCTCC 45 3 0.07 69 0 0 18 0 0.00 TRIM29 23650 mdanderson.org 37 11 119998158 119998158 + Silent SNP C C A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_012101 exon3 c.G1020T p.V340V TTGGTCCACAGCA 47 3 0.06 96 0 0 2 0 0.00 ERC1 23085 broad.mit.edu 37 12 1292505 1292505 + Missense_Mutation SNP A A G novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . ERC1 NM_178040 exon11 c.A2075G p.K692R TGAAAAAGGACTC 531 4 0.01 294 1 0.0034013605 95 24 0 0.00 PLEKHG6 55200 mdanderson.org 37 12 6437022 6437022 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001144856 exon15 c.G2273T p.R758L AGCCCCGGGACAG 39 3 0.08 22 0 0 130 0 0.00 RBP5 0 broad.mit.edu 37 12 7281645 7281674 + RNA DEL TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC - novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . RBP5 . . . . TGGCTTTTCCTGA 11 4 0.36 5 0 0 20 0 0 DUSP16 80824 broad.mit.edu 37 12 12630662 12630662 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 DUSP16,NS,carcinoma,0,1 DUSP16 NM_030640 exon7 c.C1103A p.P368Q AGCGACGGCTGCA 130 3 0.02 71 0 0 64 1 121 0 0.00 . 0 broad.mit.edu 37 12 52493869 52493869 + RNA DEL C C - novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . TCCTCTCCCCCCC 6 2 0.33 5 0 0 0 0 . 0 broad.mit.edu 37 12 127445885 127445886 + RNA INS - - C rs56291813 bycluster;by1000genomes TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . CCAAATTCCCCCC 6 2 0.33 11 0 0 0 0 . 0 broad.mit.edu 37 14 19857036 19857036 + RNA SNP A A G rs374719458 TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . ATAATAAAGTTCA 47 4 0.09 60 1 0.0166666667 3 1 0.33 TCL6 27004 mdanderson.org 37 14 96137740 96137740 + RNA SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . GACTGTGCCAGCA 47 3 0.06 42 0 0 0 0 LOC727924 0 broad.mit.edu 37 15 22332432 22332432 + RNA SNP C C T rs376977769 TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . TTCTAACGTGACA 37 4 0.11 45 1 0.0222222222 0 0 LOC727924 0 broad.mit.edu 37 15 22332442 22332442 + RNA SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . ACAGAACTTGTTC 40 4 0.10 50 1 0.02 0 0 CASC5 57082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 40933157 40933157 + Silent SNP A A G novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_170589 exon15 c.A5808G p.Q1936Q AAGTCAATATGTT 53 13 0.25 61 0 0 9 5 0.56 ZNF598 90850 mdanderson.org 37 16 2049632 2049632 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 ZNF598,NS,carcinoma,+1,1 ZNF598 NM_178167 exon11 c.C1918A p.P640T GGGCCGGGCCCTC 16 3 0.19 28 0 0 1 1 110 0 0.00 ZP2 7783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 21209141 21209141 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_003460 exon18 c.G2041A p.G681R TGCTCCCACTTGC 239 36 0.15 245 0 0 1 0 0.00 ZNF423 23090 mdanderson.org 37 16 49670954 49670954 + Silent SNP C C A rs143934881 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_015069 exon4 c.G2109T p.S703S ATCCACCGAGGAA 49 3 0.06 67 0 0 13 0 0.00 CLUH 23277 mdanderson.org 37 17 2595133 2595133 + Silent SNP G G A rs149829712 bycluster;by1000genomes;alternate_allele TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_015229 exon24 c.C3594T p.T1198T CTGCTGGGTCAGG 24 4 0.17 21 0 0 324 55 0.17 USP6 9098 mdanderson.org 37 17 5037263 5037263 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_004505 exon7 c.G466T p.V156F AACCATGTCTTCT 37 3 0.08 55 0 0 3 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 173 6 0.03 181 13 0.0718232044 31 13 0.42 rescued with RNA-seq CDC27 996 mdanderson.org 37 17 45234372 45234372 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001114091 exon7 c.G749A p.G250E GAAGTTCCTGTTC 55 3 0.05 53 1 0.0188679245 19 0 0.00 CDC27 996 mdanderson.org 37 17 45234397 45234397 + Missense_Mutation SNP G G A rs7350908 bycluster;byhapmap TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001114091 exon7 c.C724T p.P242S TATCAGGTGAAAT 44 3 0.07 53 1 0.0188679245 19 0 0.00 BZRAP1 9256 mdanderson.org 37 17 56387455 56387455 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001261835 exon21 c.C3764A p.S1255X AGGTCTGAGTTGC 32 3 0.09 42 0 0 7 0 0.00 METTL4 64863 ucsc.edu;bcgsc.ca 37 18 2544256 2544256 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . METTL4 NM_022840 exon8 c.C1211A p.P404Q TGGTCTGGAATGG 31 4 0.13 61 0 0 40 11 0 0.00 MIER2 54531 mdanderson.org 37 19 308613 308613 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_017550 exon12 c.C1162A p.R388S CCGGGCGCGGACG 32 3 0.09 43 0 0 100 0 0.00 ADAMTS10 81794 broad.mit.edu;ucsc.edu 37 19 8657036 8657036 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . ADAMTS10 . . . . ACACTCGTCGGCC 37 4 0.11 53 0 0 132 0 0 BEST2 54831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12864150 12864150 + Missense_Mutation SNP C C A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_017682 exon2 c.C229A p.P77T CTCATCCCTGTCT 92 14 0.15 114 0 0 0 0 GYS1 2997 mdanderson.org 37 19 49472837 49472837 + Nonsense_Mutation SNP G G T rs137913986 bycluster;alternate_allele TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_002103 exon16 c.C1922A p.S641X GGCACCGAGGCTG 15 3 0.20 17 0 0 51 0 0.00 RGPD4 285190 mdanderson.org 37 2 108487774 108487774 + Missense_Mutation SNP T T A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_182588 exon20 c.T3314A p.V1105E AACAAGTACTAAA 23 2 0.09 37 0 0 3 0 0.00 CCDC115 84317 mdanderson.org 37 2 131098600 131098600 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 CCDC115,NS,carcinoma,0,1 CCDC115 NM_032357 exon4 c.G311A p.R104H CCCTTGCGCCTCC 24 3 0.13 35 0 0 0 1 163 1 0.01 ANKRD30BL 554226 broad.mit.edu 37 2 132919171 132919171 + Silent SNP A A G rs199695856 bycluster TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . ANKRD30BL . . . . ATCCCCATGGTGA 111 5 0.05 132 0 0 36 2 0 0.00 ANKRD30BL 554226 broad.mit.edu 37 2 132919192 132919192 + Silent SNP G G A rs111295191 bycluster TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . ANKRD30BL . . . . AGAGTCGTTGTTG 127 4 0.03 139 0 0 36 3 0 0.00 IFIH1 64135 broad.mit.edu 37 2 163174668 163174668 + Silent SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . IFIH1 NM_022168 exon1 c.C150A p.V50V GGTGGCGACTGTC 95 3 0.03 86 0 0 102 4 0 0.00 KCNH7 90134 mdanderson.org 37 2 163253438 163253438 + Nonsense_Mutation SNP C C A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 KCNH7,neck,malignant_melanoma,0,1 KCNH7 NM_033272 exon11 c.G2425T p.G809X TTTCTCCAAATAT 50 3 0.06 53 0 0 0 1 0 0 MIR548N 100302152 hgsc.bcm.edu 37 2 179415021 179415021 + RNA SNP C C G novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . GAAATACTATGTA 40 16 0.40 40 0 0 6 4 0.67 ESPNL 339768 mdanderson.org 37 2 239039967 239039967 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_194312 exon9 c.C2612T p.P871L ACCTGCCGGCGGA 39 3 0.08 72 0 0 0 0 ATG4B 23192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242610198 242610198 + Splice_Site SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_013325 exon11 c.1014+1G>T . AAAAAGGTTTGTA 72 14 0.19 61 0 0 7 3 0.43 CENPB 1059 mdanderson.org 37 20 3766118 3766118 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001810 exon1 c.G1013A p.R338H GCCTGGCGGTAGT 32 3 0.09 35 0 0 148 0 0.00 CEBPB 1051 mdanderson.org 37 20 48808402 48808402 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_005194 exon1 c.C832T p.R278C ATCCGGCGCGAGC 36 3 0.08 23 0 0 174 0 0.00 HSCB 150274 mdanderson.org 37 22 29139966 29139966 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_172002 exon2 c.G333T p.Q111H GTCTCAGGTAGCT 46 3 0.07 61 0 0 160 0 0.00 PIK3IP1 113791 mdanderson.org 37 22 31679110 31679110 + Missense_Mutation SNP G G T rs2040533 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_052880 exon6 c.C752A p.T251N GGGGTGGTGCCCT 57 2 0.04 68 0 0 47 0 0.00 RANGAP1 5905 mdanderson.org 37 22 41660689 41660689 + Silent SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_002883 exon5 c.C459A p.G153G GCCCATGCCACAG 33 3 0.09 41 0 0 412 1 0.00 PANX2 56666 hgsc.bcm.edu 37 22 50617594 50617595 + Frame_Shift_Ins INS - - C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . PANX2 NM_052839 exon3 c.1922_1923insC p.G641fs ACGGGGGCCCCCG 82 11 0.13 87 0 0 69 26 0 0.00 CAPN7 23473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 15282061 15282061 + Missense_Mutation SNP T T C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_014296 exon13 c.T1489C p.W497R AAAAACTGGACTC 69 12 0.17 81 0 0 13 2 0.15 DHX30 22907 broad.mit.edu 37 3 47890473 47890473 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . DHX30 NM_138615 exon18 c.G2833T p.G945C GTCGCCGGCTGGG 60 3 0.05 62 0 0 101 202 0 0.00 MST1R 4486 mdanderson.org 37 3 49940449 49940449 + Nonsense_Mutation SNP G G T rs200307089 alternate_allele TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001244937 exon1 c.C594A p.Y198X TGCCACGTAGAAA 14 2 0.14 33 0 0 1 0 0.00 RASA2 5922 mdanderson.org 37 3 141205997 141205997 + Silent SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_006506 exon1 c.C72T p.P24P AGAGCCCGAGGCC 50 3 0.06 69 0 0 0 0 DDX60 55601 broad.mit.edu 37 4 169176947 169176947 + Missense_Mutation SNP T T C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . DDX60 NM_017631 exon26 c.A3472G p.R1158G GAGGCCTTTTTGT 87 4 0.05 92 0 0 304 13 0 0.00 RAPGEF6 51735 broad.mit.edu;mdanderson.org 37 5 130799747 130799747 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 RAPGEF6_ENST00000509018,face,carcinoma,0,2 RAPGEF6 NM_001164387 exon19 c.C2482A p.Q828K TGAGTTGAATTCT 79 5 0.06 101 0 0 361 2 1 0 0.00 CMAHP 0 broad.mit.edu 37 6 25115177 25115182 + RNA DEL GTTTTT GTTTTT - novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 GTTTTT GTTTTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . CMAHP . . . . GGTCACGTTTTTG 25 7 0.28 18 0 0 6 0 0 HIST1H4G 8369 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 26246971 26246971 + Missense_Mutation SNP G G A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_003547 exon1 c.C235T p.R79C TCTTGCGCTTGGC 92 5 0.05 137 0 0 0 0 KCTD20 222658 bcgsc.ca;mdanderson.org 37 6 36446943 36446943 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . KCTD20 NM_173562 exon4 c.G480T p.E160D CAATGAGAAGGGA 81 5 0.06 83 1 0.0120481928 37 14 0 0.00 C6orf170 221322 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 121562693 121562693 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . C6orf170 NM_152730 exon19 c.C2163A p.S721R ATGCCTGCTGACC 62 5 0.08 58 0 0 146 1 0 0.00 PDE10A 10846 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 165809921 165809921 + Missense_Mutation SNP A A C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . PDE10A NM_001130690 exon14 c.T1306G p.C436G AAATGCACTCTGA 120 16 0.13 125 6 0.048 154 0 0 CYTH3 9265 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 6204910 6204910 + Missense_Mutation SNP G G C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_004227 exon12 c.C1121G p.S374C TTGATGGATTTCA 204 24 0.12 197 0 0 54 11 0.20 FERD3L 222894 hgsc.bcm.edu 37 7 19184768 19184768 + Missense_Mutation SNP T T C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 FERD3L,NS,carcinoma,+1,1 FERD3L NM_152898 exon1 c.A218G p.D73G TCTCCGTCCCCCT 74 3 0.04 77 0 0 1 1 0 0 COL26A1 136227 broad.mit.edu 37 7 101063621 101063624 + RNA DEL GACA GACA - novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 GACA GACA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . GTGTTTGACAGAC 6 2 0.33 4 0 0 0 0 IFRD1 3475 broad.mit.edu;bcgsc.ca 37 7 112115496 112115497 + Frame_Shift_Del DEL CT CT - novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 CT CT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . IFRD1 NM_001007245 exon13 c.1278_1279del p.426_427del ATATAACTCTGCA 41 9 0.22 46 0 0 46 287 0 0.00 CCDC136 64753 hgsc.bcm.edu 37 7 128441311 128441311 + Nonsense_Mutation SNP G G T rs200870724 by1000genomes;alternate_allele TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 NAG6,NS,carcinoma,0,3 NAG6 NM_001201372 exon5 c.G568T p.E190X GAAATAGAACAGG 75 3 0.04 45 0 0 0 3 16 0 0.00 CHPF2 54480 mdanderson.org 37 7 150935131 150935131 + Silent SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_019015 exon4 c.G1683T p.L561L GAGGCTGGCCTGG 49 3 0.06 46 0 0 200 0 0.00 MYOM2 9172 mdanderson.org 37 8 2000361 2000361 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_003970 exon3 c.G193T p.G65X CTGGGAGGAACCA 52 3 0.06 83 0 0 0 0 LOC392232 0 bcgsc.ca 37 8 73139272 73139272 + RNA SNP G G A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . CTGCCTGCTCCTT 38 7 0.18 33 0 0 3 0 0.00 COL14A1 7373 mdanderson.org 37 8 121327809 121327809 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_021110 exon39 c.G4589T p.G1530V ATACTGGCCTTCC 41 3 0.07 66 0 0 17 0 0.00 PSCA 8000 mdanderson.org 37 8 143762760 143762760 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_005672 exon2 c.G41T p.C14F TGCTGTGCTACTC 43 3 0.07 59 0 0 0 0 . 0 bcgsc.ca 37 9 44059412 44059412 + RNA SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . ATTTCTGAGAATT 16 4 0.25 43 0 0 0 0 ANKRD19P 0 broad.mit.edu 37 9 95600105 95600105 + RNA DEL T T - novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . . . . . TGGTTATTTTTTT 7 3 0.43 8 0 0 2 0 0.00 WNK2 65268 mdanderson.org 37 9 95997149 95997149 + Missense_Mutation SNP G G T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_006648 exon4 c.G1135T p.V379F GTGGACGTCTATG 69 4 0.06 90 0 0 6 0 0.00 HSPA5 3309 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 127999044 127999044 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . HSPA5 NM_005347 exon8 c.G1792A p.V598I CTTCTACAGCTTT 125 13 0.10 140 1 0.0071428571 41 5985 1219 0.20 GAPVD1 26130 broad.mit.edu 37 9 128099583 128099583 + Missense_Mutation SNP G G C novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . GAPVD1 NM_015635 exon16 c.G2671C p.V891L GGAGCTGTGGGAG 84 3 0.04 108 0 0 124 19 0 0.00 ABCA2 20 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 139906169 139906169 + Silent SNP G G A novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_212533 exon36 c.C5658T p.V1886V GATGATGACACAG 63 8 0.13 69 0 0 21 1 0.05 KRBOX4 55634 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 46332341 46332341 + Missense_Mutation SNP A A G novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_001129898 exon6 c.A410G p.D137G AATTTGATTCTGT 228 7 0.03 147 0 0 27 0 0.00 HUWE1 10075 mdanderson.org 37 X 53672397 53672397 + Missense_Mutation SNP C C T novel TCGA-2G-AAG8-01A-31D-A42Y-10 TCGA-2G-AAG8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2ceba955-6002-4bc2-948a-a361cce3d2a1 6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9 . . NM_031407 exon7 c.G370A p.A124T AGGAAGCCAATAA 35 3 0.09 43 0 0 1 0 0.00