Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MAD2L2 10459 mdanderson.org 37 1 11740450 11740450 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_006341 exon3 c.G119A p.G40D AAGATGCCCACGG 46 3 0.07 69 0 0 78 0 0.00 CROCCP2 0 broad.mit.edu 37 1 16957490 16957490 + RNA DEL G G - novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . GGCCTCGGCCCGG 6 2 0.33 4 0 0 8 0 0.00 FUCA1 2517 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 24194762 24194762 + Silent SNP C C G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_000147 exon1 c.G15C p.G5G CCTCATCCCCGGA 42 8 0.19 33 0 0 14 2 0.14 AHDC1 27245 broad.mit.edu;mdanderson.org 37 1 27877165 27877165 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . AHDC1 NM_001029882 exon6 c.C1462T p.R488W TGTTCCGCCGCCC 54 4 0.07 85 0 0 98 40 0 0.00 CDC14A 8556 mdanderson.org 37 1 100856378 100856378 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_033313 exon4 c.G307T p.A103S GCCTATGCAGTAA 50 3 0.06 63 0 0 9 0 0.00 VAV3 10451 mdanderson.org 37 1 108145093 108145093 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_006113 exon24 c.G2146A p.A716T GCTTTGCTTCATT 40 3 0.08 47 0 0 32 0 0.00 ZNF697 90874 broad.mit.edu;mdanderson.org 37 1 120165430 120165430 + Silent SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 ZNF697_ENST00000421812,right_upper_lobe,carcinoma,-1,2 ZNF697 NM_001080470 exon3 c.C1536A p.R512R GATGCGGCGGTGG 49 3 0.06 57 0 0 26 2 17 0 0.00 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150526211 150526211 + Silent SNP C C A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_019032 exon6 c.C744A p.P248P TGCCCCCCTACGG 79 35 0.44 74 0 0 120 65 0.54 RYR2 6262 broad.mit.edu 37 1 237586494 237586494 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 RYR2,NS,other,+1,1 RYR2 NM_001035 exon12 c.G951T p.M317I ACTCATGGACAAA 340 5 0.01 410 0 0 1273 1 0 0 TLX1 3195 broad.mit.edu 37 10 102891433 102891433 + Silent SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . TLX1 NM_005521 exon1 c.C135T p.Y45Y AGAATACGGCCTT 93 5 0.05 67 0 0 20 1 0 0.00 PNLIPRP2 5408 broad.mit.edu 37 10 118386476 118386476 + RNA SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . PNLIPRP2 . . . . TGTTGGGGCGGAG 174 4 0.02 137 0 0 103 2 0 0.00 DBX1 120237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 20180817 20180818 + Missense_Mutation DNP TG TG CT novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 TG TG Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001029865 exon2 c.C388A p.Q130R ACGCTCTGGAGCA 77 10 0.13 94 0 0 0 0 FNBP4 23360 mdanderson.org 37 11 47755578 47755578 + Missense_Mutation SNP T T C novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 FNBP4,NS,carcinoma,-1,1 FNBP4 NM_015308 exon10 c.A1685G p.E562G CTTACCTCAGTCT 38 10 0.26 45 8 0.1777777778 -1 1 84 0 0.00 RPLP0P2 113157 hgsc.bcm.edu 37 11 61405030 61405030 + RNA SNP T T A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . TGCTGCTGCAGCC 104 5 0.05 113 0 0 6 0 0.00 MEN1 4221 mdanderson.org 37 11 64577508 64577508 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_130803 exon2 c.C74T p.A25V AGCTCGGCAGCAA 36 3 0.08 39 0 0 32 0 0.00 SIPA1 6494 mdanderson.org 37 11 65414526 65414526 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_006747 exon8 c.C2021T p.A674V TGGTGGCGCGCCT 8 2 0.25 15 0 0 13 0 0.00 MYEOV 26579 broad.mit.edu 37 11 69063822 69063822 + Missense_Mutation SNP T T A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . MYEOV NM_138768 exon3 c.T905A p.L302H ACCACCTCCTCCT 92 6 0.07 103 2 0.0194174757 42 4 0 0.00 SLC37A4 2542 mdanderson.org 37 11 118897770 118897770 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001467 exon6 c.C661A p.L221M ACAGCAGCAGCTC 19 2 0.11 16 0 0 130 0 0.00 ROBO3 64221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124740969 124740969 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_022370 exon7 c.G1093A p.A365T AGCGTGGCTTTCC 86 35 0.41 85 0 0 0 0 WNT1 7471 broad.mit.edu 37 12 49375067 49375067 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . WNT1 NM_005430 exon4 c.G757T p.A253S GACGGCGCCTCGC 110 6 0.05 76 1 0.0131578947 13 0 0 CIT 11113 mdanderson.org 37 12 120127985 120127985 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001206999 exon47 c.G6157A p.V2053M TCCTCACGGCTCC 15 2 0.13 16 0 0 8 0 0.00 ACIN1 22985 broad.mit.edu 37 14 23528416 23528416 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 ACIN1_ENST00000338631,NS,carcinoma,+1,2 ACIN1 NM_014977 exon19 c.C3967T p.R1323C TGTGGCGCTTGGT 111 4 0.04 159 0 0 147 2 300 27 0.09 rescued with RNA-seq IGBP1P1 0 broad.mit.edu 37 14 35409700 35409701 + RNA INS - - T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . AAAAAAAATTTTT 6 2 0.33 7 0 0 0 0 TRIM9 114088 mdanderson.org 37 14 51489585 51489585 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 TRIM9_ENST00000360392,NS,carcinoma,+2,5 TRIM9_ENST00000360392 NM_052978 exon3 c.C1009A p.R337S TGACGCGGGCCAG 48 3 0.06 72 0 0 2 5 0 0 FOS 2353 mdanderson.org 37 14 75747810 75747810 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_005252 exon4 c.G826T p.A276S TTCCCAGCATCAT 22 2 0.09 35 0 0 582 0 0.00 CHEK2P2 0 broad.mit.edu 37 15 20488769 20488770 + RNA DNP CA CA TG novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 CA CA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . GCACTCCAAGATT 331 10 0.03 362 2 0.0055248619 0 0 DISP2 85455 mdanderson.org 37 15 40660600 40660600 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_033510 exon8 c.C2287T p.P763S CAGCTGCCGCAGG 39 3 0.08 42 0 0 0 0 FSD2 123722 hgsc.bcm.edu 37 15 83455275 83455275 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001007122 exon3 c.C723A p.F241L AGTGATGAAAACC 96 5 0.05 120 0 0 0 0 KIF7 374654 mdanderson.org 37 15 90188603 90188603 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_198525 exon9 c.C2002A p.L668I CCTCAAGGCAAAG 55 3 0.05 62 0 0 22 0 0.00 FAM169B 283777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 98982942 98982942 + Missense_Mutation SNP T T A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_182562 exon7 c.A497T p.D166V GGATCATCCTTTG 143 43 0.30 191 0 0 0 0 RAB11FIP3 9727 mdanderson.org 37 16 560707 560707 + Missense_Mutation SNP G G T rs190687913 bycluster;by1000genomes;alternate_allele TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_014700 exon9 c.G1547T p.C516F GAGCCTGCGAGAT 43 3 0.07 40 0 0 64 0 0.00 RHBDL1 9028 mdanderson.org 37 16 727545 727545 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_003961 exon5 c.G970T p.A324S CACCTGGCCAACG 13 2 0.15 21 0 0 2 0 0.00 ZNF598 90850 mdanderson.org 37 16 2049697 2049697 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_178167 exon11 c.C1853T p.P618L GCTTCCGGGGCCT 24 2 0.08 14 0 0 40 1 0.03 SRCAP 10847 hgsc.bcm.edu;bcgsc.ca 37 16 30735366 30735367 + Frame_Shift_Ins INS - - T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . SRCAP NM_006662 exon25 c.4621_4622insT p.V1541fs TCAACCGTGGCCC 142 44 0.31 120 0 0 298 102 0 0.00 C16orf78 123970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 49430428 49430428 + Missense_Mutation SNP G G C novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_144602 exon4 c.G489C p.E163D ACAGGAGGGTACC 191 45 0.24 136 0 0 0 0 LOC283922 0 broad.mit.edu 37 16 74372644 74372644 + RNA SNP A A G rs2549260 bycluster TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . CTTGTCAGGGGGA 87 6 0.07 35 0 0 9 0 0.00 TAF1C 9013 mdanderson.org 37 16 84212612 84212612 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_005679 exon14 c.C2545A p.Q849K GCTGCTGGGAGCG 20 3 0.15 36 0 0 194 0 0.00 CDC27 996 mdanderson.org 37 17 45234397 45234397 + Missense_Mutation SNP G G A rs7350908 bycluster;byhapmap TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001114091 exon7 c.C724T p.P242S TATCAGGTGAAAT 65 6 0.09 64 0 0 46 0 0.00 SAMD14 201191 broad.mit.edu;mdanderson.org 37 17 48190406 48190406 + Missense_Mutation SNP C C A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . SAMD14 NM_174920 exon11 c.G1189T p.G397W TGAGCCCCAGGCT 41 3 0.07 34 0 0 36 57 0 0.00 SALL3 27164 mdanderson.org 37 18 76753052 76753052 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 SALL3,NS,carcinoma,-1,1 SALL3 NM_171999 exon2 c.C1061T p.A354V TGGGTGCGGCGCC 12 2 0.17 16 0 0 -1 1 0 0 AZU1 566 hgsc.bcm.edu;broad.mit.edu 37 19 831856 831857 + In_Frame_Ins INS - - CCGGGA novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . AZU1 NM_001700 exon5 c.735_736insCCGGGA p.N245delinsNPG CAACAACCCGGGA 125 38 0.30 156 0 0 31 2 0 0.00 ASNA1 439 ucsc.edu;bcgsc.ca 37 19 12858375 12858375 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . ASNA1 NM_004317 exon6 c.G884A p.R295H AGGCCCGTCACAA 80 33 0.41 117 2 0.0170940171 23 237 105 0.44 CPAMD8 27151 mdanderson.org 37 19 17004138 17004138 + Silent SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_015692 exon42 c.G5580A p.G1860G CCGAGGCCCGGCT 26 3 0.12 24 0 0 1088 0 0.00 RHPN2 85415 mdanderson.org 37 19 33517507 33517507 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 RHPN2,face,carcinoma,0,2 RHPN2 NM_033103 exon3 c.G217A p.V73M GCCGCACTTGCTC 11 3 0.27 27 0 0 0 2 24 0 0.00 PAF1 54623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 39880019 39880019 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_019088 exon6 c.C364T p.Q122X GCTGCTGGGATCT 80 30 0.38 128 0 0 136 5 0.04 NKPD1 284353 bcgsc.ca 37 19 45655550 45655550 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . NKPD1 NM_198478 exon4 c.C2145A p.D715E GTCGCCGTCCAGG 67 4 0.06 79 0 0 46 0 0 CCDC155 147872 mdanderson.org 37 19 49912498 49912498 + Silent SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 CCDC155,rectum,carcinoma,0,1 CCDC155 NM_144688 exon14 c.G1104T p.L368L CGAGCTGCTACCC 50 3 0.06 65 0 0 0 1 0 0 ZNF525 170958 broad.mit.edu 37 19 53879109 53879109 + Silent SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . ZNF525 . . . . ATACAGGGACGTG 61 6 0.10 54 0 0 35 5 0 0.00 NBAS 51594 broad.mit.edu 37 2 15378674 15378674 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . NBAS NM_015909 exon45 c.C5861A p.T1954N TTCAAAGTATCTG 148 4 0.03 190 0 0 246 120 0 0.00 AAK1 22848 ucsc.edu;bcgsc.ca 37 2 69746110 69746110 + Missense_Mutation SNP C C G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . AAK1 NM_014911 exon12 c.G1473C p.Q491H CTGCTGCTGGTAA 38 4 0.11 61 0 0 121 8 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89102234 89102234 + RNA SNP C C G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . AGGTAGCTGTGAG 25 5 0.20 24 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89104503 89104504 + RNA INS - - C rs149625899 bycluster;by1000genomes TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . ATTTTTTTCAGAT 8 3 0.38 16 1 0.0625 0 0 WASH2P 0 broad.mit.edu 37 2 114340538 114340538 + RNA SNP A A T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . AATATAAAATGCT 370 17 0.05 473 0 0 0 0 STRADB 55437 hgsc.bcm.edu;bcgsc.ca 37 2 202344880 202344880 + Silent SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_018571 exon12 c.C1239T p.D413D AAAAGACTCATAC 120 8 0.07 130 0 0 45 0 0.00 NGEF 25791 mdanderson.org 37 2 233746912 233746912 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_019850 exon13 c.C1821A p.F607L GGATGTGAACGAA 39 3 0.08 55 0 0 33 0 0.00 ESPNL 339768 mdanderson.org 37 2 239039508 239039508 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_194312 exon9 c.G2153T p.C718F TCAGCTGCGAGGA 23 2 0.09 21 0 0 2 0 0.00 . 140731 bcgsc.ca 37 20 56803358 56803358 + Missense_Mutation SNP C C G rs377420268 bycluster;alternate_allele TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . CCCGCACGGTCAT 93 11 0.12 98 0 0 0 0 HELZ2 85441 mdanderson.org 37 20 62195952 62195952 + Missense_Mutation SNP G G T rs370784417 alternate_allele TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001037335 exon9 c.C4223A p.P1408Q CTGGCCGGCAGCA 32 3 0.09 38 0 0 10 0 0.00 BTG3 10950 mdanderson.org 37 21 18981446 18981446 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_006806 exon2 c.C17A p.A6D ACGGCAGCAATTT 111 5 0.05 97 0 0 67 0 0.00 KRTAP10-9 386676 mdanderson.org 37 21 46047200 46047200 + Missense_Mutation SNP G G A rs201090014 bycluster TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_198690 exon1 c.G112A p.A38T TGCTGCGCCCCGG 43 3 0.07 29 0 0 0 0 CRYBB2P1 0 broad.mit.edu 37 22 25855682 25855683 + RNA INS - - GTGT rs71322752 bycluster;by1000genomes TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . GCAGCTGGTGTGT 9 4 0.44 4 0 0 2 0 0.00 CCR3 1232 hgsc.bcm.edu 37 3 46307688 46307688 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 CCR3,NS,carcinoma,-2,1 CCR3 NM_178328 exon3 c.G1102A p.A368T TCCACAGCAGAGC 64 3 0.05 68 0 0 -2 1 1 0 0.00 VPRBP 9730 broad.mit.edu 37 3 51458228 51458228 + Missense_Mutation SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . VPRBP NM_014703 exon14 c.C2037A p.N679K GCCGTTGTTGGAC 125 4 0.03 150 1 0.0066666667 107 15 0 0.00 . 0 broad.mit.edu 37 3 112798472 112798474 + RNA DEL GCG GCG - novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 GCG GCG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . GCAGCAGCGGCAG 6 2 0.33 10 0 0 0 0 USP13 8975 hgsc.bcm.edu;bcgsc.ca 37 3 179472611 179472611 + Frame_Shift_Del DEL C C - novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . USP13 NM_003940 exon15 c.1889delG p.S630fs CATCAGCCCCCCC 110 31 0.28 110 0 0 117 4 0 0.00 ANTXR2 118429 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 80940116 80940116 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . ANTXR2 NM_001145794 exon11 c.C881T p.S294L CTCACTGAAACAT 223 79 0.35 272 1 0.0036764706 97 136 66 0.49 MATR3 9782 broad.mit.edu 37 5 138651822 138651822 + Silent SNP T T C novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . MATR3 NM_018834 exon5 c.T1074C p.P358P GGGACCTCCACCT 132 3 0.02 191 0 0 85 453 1 0.00 ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139820640 139820640 + Missense_Mutation SNP C C G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_024668 exon5 c.C826G p.L276V ACTCCCCTGATGG 64 7 0.11 106 0 0 16 2 0.13 APBB3 10307 broad.mit.edu 37 5 139938282 139938282 + Missense_Mutation SNP A A G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . APBB3 NM_006051 exon12 c.T1370C p.L457P AGGGGGAGGGGCA 236 7 0.03 266 2 0.007518797 34 14 0 0.00 BTN3A1 0 broad.mit.edu 37 6 26411341 26411341 + Silent SNP A A G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . BTN3A1 NM_007048 exon8 c.A969G p.G323G AGGGGGAGAGAGA 96 3 0.03 96 1 0.0104166667 80 12 0 0.00 CYP21A2 1589 broad.mit.edu 37 6 32008457 32008457 + Silent SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . CYP21A2 . . . . CGGCTACGACATC 282 72 0.26 325 0 0 42 2 1 0.50 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32037571 32037571 + Silent SNP C C T rs376818111 TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_019105 exon15 c.G5346A p.L1782L CACCTGCAGCTCC 74 24 0.32 110 0 0 51 17 0.33 SYNGAP1 8831 mdanderson.org 37 6 33406612 33406612 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_006772 exon10 c.G1592A p.C531Y TCAAGTGCACAGC 50 3 0.06 79 0 0 33 0 0.00 AGR3 155465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 16918209 16918209 + Silent SNP A A G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 AGR3,NS,carcinoma,+1,1 AGR3 NM_176813 exon2 c.T34C p.L12L CGAGTAAGAGGCA 74 32 0.43 87 0 0 1 1 31 16 0.52 CCT6P3 0 broad.mit.edu 37 7 64528813 64528814 + RNA INS - - T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . CTGTAACTTTTTT 7 3 0.43 8 0 0 1 0 0.00 TFR2 7036 mdanderson.org 37 7 100231108 100231108 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_003227 exon4 c.C545T p.A182V GAGAGCGCCGCGC 35 3 0.09 41 0 0 2 0 0.00 DOCK4 9732 mdanderson.org 37 7 111400315 111400315 + Silent SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_014705 exon39 c.C4057T p.L1353L CGTTCAGCATTCT 58 5 0.09 66 0 0 12 0 0.00 GPR37 2861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 124386667 124386667 + Missense_Mutation SNP T T C novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 GPR37,NS,carcinoma,+1,2 GPR37 NM_005302 exon2 c.A1754G p.N585S TACTCGTTGTCAT 63 29 0.46 81 0 0 1 2 26 14 0.54 NOS3 4846 mdanderson.org 37 7 150706579 150706579 + Silent SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_000603 exon20 c.G2418T p.R806R CAACCGGCCCGGC 21 3 0.14 27 0 0 13 0 0.00 KAT6A 7994 mdanderson.org 37 8 41839445 41839445 + Missense_Mutation SNP G G A novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001099412 exon5 c.C737T p.P246L AGTTCAGGGGAAA 50 3 0.06 67 0 0 11 0 0.00 PREX2 80243 broad.mit.edu 37 8 68956766 68956766 + Missense_Mutation SNP T T C novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . PREX2 NM_025170 exon8 c.T884C p.L295P GGTACCTTTTTCG 173 3 0.02 150 0 0 614 7 0 0.00 AGO2 27161 mdanderson.org 37 8 141554337 141554337 + Missense_Mutation SNP T T C novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_012154 exon14 c.A1814G p.D605G TTCCCATCCCCGG 77 5 0.06 86 2 0.023255814 10 0 0.00 . 0 broad.mit.edu 37 9 68405044 68405045 + RNA INS - - C novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . . . . . TCCTGATACCAAA 6 2 0.33 7 0 0 0 0 LRSAM1 90678 mdanderson.org 37 9 130249959 130249959 + Missense_Mutation SNP G G T rs372452916 alternate_allele TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_001190723 exon18 c.G1264T p.A422S AGCATGGCCGAAA 33 3 0.09 54 0 0 62 0 0.00 LRRC8A 56262 broad.mit.edu 37 9 131670156 131670156 + Missense_Mutation SNP A A G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . LRRC8A NM_001127244 exon3 c.A713G p.E238G AGGGGGAGCAAGC 78 5 0.06 107 2 0.0186915888 69 99 1 0.01 CSF2RA 0 broad.mit.edu 37 X 1422911 1422911 + Splice_Site SNP A A G novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . CSF2RA NM_001161530 exon10 c.A1144G p.R382G TTTAAAAGGTAAC 521 6 0.01 680 0 0 153 23 0 0.00 MXRA5 25878 broad.mit.edu 37 X 3229354 3229354 + Missense_Mutation SNP C C T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . MXRA5 NM_015419 exon7 c.G6890A p.R2297H TTGGTGCGTCCAC 48 3 0.06 62 0 0 815 432 0 0.00 G6PD 2539 hgsc.bcm.edu 37 X 153764200 153764200 + Silent SNP G G T novel TCGA-2G-AAG5-01A-11D-A42Y-10 TCGA-2G-AAG5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d27065dd-9387-4607-90e4-352b020179ff 02827416-0bd6-4593-95a9-0a8b5ee9b4f6 . . NM_000402 exon4 c.C309A p.S103S GAGGCGGGAACGG 90 5 0.06 123 0 0 118 0 0.00