Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SLC1A7 6512 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 53580475 53580475 + Missense_Mutation SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_006671 exon3 c.G386A p.G129E GGCTTCCCACTCT 140 8 0.06 89 0 0 2 0 0.00 NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + Splice_Site SNP G G A rs75226570 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . NBPF10 . . . . ACAACAGTAAGTT 39 8 0.21 26 0 0 221 0 0 PRELP 5549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203453089 203453089 + Silent SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 PRELP,caecum,carcinoma,0,1 PRELP NM_201348 exon2 c.C777T p.N259N CCCTAACGGATAC 207 26 0.13 129 0 0 0 1 29 1 0.03 ADARB2 105 mdanderson.org 37 10 1245984 1245984 + Missense_Mutation SNP C C G novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_018702 exon8 c.G1786C p.A596P CGCGTGCGAGGTG 27 3 0.11 24 0 0 0 0 TAF3 83860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 8006560 8006560 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_031923 exon3 c.C1087T p.Q363X CAAATACAGACAC 109 15 0.14 90 0 0 12 2 0.17 LRRTM3 347731 broad.mit.edu;mdanderson.org 37 10 68687000 68687000 + Missense_Mutation SNP G G A rs143239282 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . LRRTM3 NM_178011 exon2 c.G326A p.R109H GAATACGCAGACT 52 4 0.08 39 0 0 241 0 0 IRF7 3665 mdanderson.org 37 11 615253 615253 + Silent SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_004031 exon1 c.C66A p.A22A GCGTGGGGCTGCC 19 2 0.11 23 0 0 125 0 0.00 . 0 bcgsc.ca 37 11 18931986 18931986 + RNA SNP T T C novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . ACTGCCTGAATCT 37 4 0.11 38 0 0 0 0 CCDC87 55231 mdanderson.org 37 11 66360040 66360040 + Silent SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_018219 exon1 c.C447A p.A149A GAGGGTGGCTGAT 41 3 0.07 46 0 0 1 0 0.00 LRP5 4041 mdanderson.org 37 11 68216521 68216521 + Missense_Mutation SNP T T C novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_002335 exon23 c.T4831C p.C1611R TCCCCCTGCACGG 22 3 0.14 27 0 0 63 0 0.00 STT3A 3703 mdanderson.org 37 11 125482643 125482643 + Splice_Site SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_152713 exon12 c.1365+1G>T . AATGAAGTGAGAA 43 3 0.07 39 1 0.0256410256 9 0 0.00 WBP11 51729 broad.mit.edu 37 12 14947586 14947586 + Silent SNP A A G novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 WBP11,right_lower_lobe,carcinoma,0,2 WBP11 NM_016312 exon7 c.T606C p.P202P AGGGGGAGGGCCA 419 8 0.02 149 3 0.0201342282 66 2 460 3 0.01 DDX11 1663 ucsc.edu 37 12 31254052 31254052 + Missense_Mutation SNP G G C rs201027785 by1000genomes TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . DDX11 NM_030653 exon20 c.G2040C p.E680D AAGAGAGCTGCCT 171 2 0.01 109 0 0 188 209 26 0.12 rescued with RNA-seq MLL2 8085 mdanderson.org 37 12 49427679 49427679 + Silent SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 MLL2_ENST00000301067,NS,carcinoma,0,2 MLL2_ENST00000301067 NM_003482 exon39 c.G10809A p.Q3603Q CTGCTGCTGTTGT 52 4 0.08 27 0 0 0 2 22 0 0.00 ITGA5 3678 broad.mit.edu 37 12 54791248 54791248 + Silent SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . ITGA5 NM_002205 exon29 c.C2967A p.T989T TGCCTTGGTCCAT 125 4 0.03 56 1 0.0178571429 99 203 0 0.00 RFC3 5983 broad.mit.edu 37 13 34398073 34398073 + Missense_Mutation SNP T T A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . RFC3 NM_002915 exon3 c.T245A p.I82N AAAAAATTGAAAT 479 11 0.02 256 2 0.0078125 40 36 0 0.00 PCCA 5095 mdanderson.org 37 13 100915059 100915059 + Missense_Mutation SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_001178004 exon10 c.G793T p.D265Y TTTATTGATAATC 46 3 0.07 36 0 0 10 0 0.00 . 0 broad.mit.edu 37 14 19857036 19857036 + RNA SNP A A G rs374719458 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . ATAATAAAGTTCA 35 5 0.14 20 0 0 4 0 0.00 OR10G3 26533 mdanderson.org 37 14 22038818 22038818 + Missense_Mutation SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_001005465 exon1 c.C58A p.P20T TGAGTGGATACGG 20 2 0.10 27 0 0 0 0 LOC727924 0 broad.mit.edu 37 15 22332492 22332492 + RNA SNP A A C novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . TCTCTTATTACTA 188 5 0.03 84 0 0 0 0 . 0 broad.mit.edu 37 15 32828941 32828973 + RNA DEL GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT - novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . GCTCCAGCCCCAG 16 5 0.31 13 0 0 0 0 TYRO3 7301 hgsc.bcm.edu;bcgsc.ca 37 15 41865666 41865666 + Splice_Site SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_006293 exon17 c.2145+1G>T . GACGTGGTGAGCA 121 11 0.09 95 0 0 0 0 TMEM62 80021 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43470879 43470879 + Missense_Mutation SNP G G A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_024956 exon12 c.G1456A p.V486M TATTCTGTGTTGT 142 16 0.11 75 0 0 9 0 0.00 MEF2A 4205 hgsc.bcm.edu 37 15 100211846 100211846 + Missense_Mutation SNP G G A rs75705863 bycluster TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 MEF2A_ENST00000354410,NS,carcinoma,+1,1 MEF2A_ENST00000354410 NM_005587 exon5 c.G380A p.R127Q TGATGCGGAATCA 54 4 0.07 23 1 0.0434782609 1 1 4 0 0.00 WASH3P 0 broad.mit.edu 37 15 102516512 102516512 + RNA SNP G G A rs62635297 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . WASH3P . . . . TGGGCCGTTGCTC 132 5 0.04 127 0 0 56 127 66 0.52 rescued with RNA-seq C1QTNF8 390664 mdanderson.org 37 16 1143813 1143813 + Silent SNP G G A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_207419 exon4 c.C447T p.F149F CAGGTCGAAGGCG 16 2 0.13 33 0 0 0 0 KIAA0430 9665 broad.mit.edu 37 16 15709776 15709776 + Missense_Mutation SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . KIAA0430 NM_014647 exon16 c.C3164A p.T1055N ACACAGGTAATGA 207 4 0.02 136 0 0 154 11 0 0.00 ERI2 112479 broad.mit.edu 37 16 20809122 20809122 + Missense_Mutation SNP G G T rs76921366 bycluster;byfrequency TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . ERI2 NM_001142725 exon9 c.C2000A p.T667K TGGCTTGTTTCTG 155 15 0.10 83 4 0.0481927711 50 14 2 0.14 PKD1L2 114780 broad.mit.edu 37 16 81146189 81146190 + RNA INS - - A rs59722247 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . PKD1L2 . . . . GATGAGGGGGAGG 6 2 0.33 4 0 0 361 0 0 PKD1L2 114780 broad.mit.edu 37 16 81146190 81146191 + RNA INS - - GA rs72015718 alternate_allele TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . PKD1L2 . . . . ATGAGGGGGAGGA 6 2 0.33 4 0 0 361 0 0 ALOX12B 242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7982769 7982769 + Missense_Mutation SNP G G A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_001139 exon8 c.C1016T p.P339L CAGAGGGGGGCGC 197 34 0.17 201 0 0 0 0 PLD6 201164 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 17109307 17109307 + Silent SNP C C A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . PLD6 NM_178836 exon1 c.G294T p.L98L GGCGAACAGGCAG 31 6 0.19 48 1 0.0208333333 9 1 0 0.00 KRTAP9-1 728318 hgsc.bcm.edu 37 17 39346594 39346594 + Silent SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 KRTAP9-1_ENST00000398470,colon,carcinoma,+2,2 KRTAP9-1_ENST00000398470 NM_001190460 exon1 c.C456T p.T152T GCCCACCTGCTGT 80 4 0.05 51 0 0 2 2 0 0 FZR1 51343 broad.mit.edu 37 19 3531983 3531983 + Missense_Mutation SNP A A C rs200584048 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . FZR1 NM_001136198 exon9 c.A898C p.T300P ATCCGCACCCCGC 31 13 0.42 30 9 0.3 42 74 12 0.16 HMG20B 10362 mdanderson.org 37 19 3573771 3573771 + Silent SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_006339 exon3 c.G120T p.A40A ACGCGCGGGCGAG 49 3 0.06 40 0 0 40 0 0.00 TIMM44 10469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 7998431 7998431 + Silent SNP G G A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_006351 exon7 c.C708T p.H236H GTCCTTGTGCAGC 169 29 0.17 163 0 0 188 59 0.31 RAD23A 5886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13058807 13058807 + Missense_Mutation SNP T T A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 RAD23A,NS,carcinoma,+1,1 RAD23A NM_005053 exon2 c.T218A p.V73D TTGTGGTCGTCAT 58 8 0.14 62 0 0 1 1 295 87 0.29 BRD4 23476 broad.mit.edu 37 19 15350233 15350233 + Silent SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . BRD4 NM_058243 exon17 c.G3546A p.Q1182Q CGGCTCCTGTTTC 166 4 0.02 161 0 0 172 128 2 0.02 LYPD3 27076 mdanderson.org 37 19 43967282 43967282 + Silent SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_014400 exon4 c.G540A p.T180T ACCTGCCGTCAAG 37 3 0.08 53 0 0 6 0 0.00 ANKRD20A8P 0 broad.mit.edu 37 2 95518674 95518674 + RNA DEL G G - novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . AAAAAAGAATAAC 6 2 0.33 8 0 0 0 0 AVP 551 mdanderson.org 37 20 3063730 3063730 + Missense_Mutation SNP G G A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_000490 exon2 c.C215T p.A72V CGCAGCGCCTCAG 10 3 0.30 13 0 0 11 0 0.00 RRBP1 6238 bcgsc.ca 37 20 17639834 17639834 + Missense_Mutation SNP T T C novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . RRBP1 . . . . GCCTTCTTGCCCT 257 17 0.07 242 4 0.0165289256 157 837 59 0.07 NINL 22981 mdanderson.org 37 20 25439019 25439019 + Silent SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_025176 exon22 c.G3843A p.R1281R ACTTACCCGCTGT 20 3 0.15 36 0 0 39 0 0.00 FRG1B 0 broad.mit.edu 37 20 29632635 29632635 + Missense_Mutation SNP C C G rs375238322 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . FRG1B . . . . CCAAGACCACAAA 650 7 0.01 352 0 0 181 104 10 0.10 rescued with RNA-seq . 0 broad.mit.edu 37 20 52557949 52557950 + RNA INS - - TT rs72548465 bycluster;by1000genomes TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . GTGTGTGTGTGTG 65 11 0.17 16 0 0 0 0 C20orf195 79025 mdanderson.org 37 20 62187284 62187284 + Missense_Mutation SNP C C A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_024059 exon2 c.C268A p.Q90K GGCGACCAGAACC 21 3 0.14 16 0 0 5 0 0.00 BAGE 85319 broad.mit.edu 37 21 11096512 11096516 + RNA DEL GTTTT GTTTT - rs139100150 alternate_allele TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 GTTTT GTTTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . TTTTAAGTTTTGT 6 2 0.33 6 0 0 0 0 HIC2 23119 broad.mit.edu;mdanderson.org 37 22 21799538 21799538 + Silent SNP C C A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . HIC2 NM_015094 exon3 c.C354A p.T118T CAGCACCCTCCTC 75 6 0.08 58 0 0 42 20 10 0.50 POM121L1P 25812 mdanderson.org 37 22 22979724 22979724 + RNA SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . GTCCTGGCAGCAT 40 3 0.08 21 0 0 0 0 POM121L9P 0 broad.mit.edu 37 22 24657088 24657088 + RNA DEL A A - novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . GGGAAGAGGCGGG 11 3 0.27 9 0 0 0 0 KALRN 8997 mdanderson.org 37 3 124114183 124114183 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_003947 exon12 c.G2158T p.E720X CCCAGCGAGGCCA 49 3 0.06 47 0 0 4 0 0.00 . 0 bcgsc.ca 37 4 49553037 49553037 + RNA SNP A A T rs58062155 TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . ATAAGAAGGAACT 110 20 0.18 46 1 0.0217391304 0 0 FRAS1 80144 mdanderson.org 37 4 79460492 79460492 + Silent SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_025074 exon73 c.G11343T p.V3781V TGATGTGCCTTTT 86 6 0.07 43 0 0 1 0 0.00 SLC9B1 150159 ucsc.edu 37 4 103822298 103822298 + Silent SNP C C T rs3175325 bycluster;byfrequency;by2hit2allele TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_139173 exon12 c.G1524A p.Q508Q TGACAACTGCAGT 49 17 0.35 24 6 0.25 1 0 0.00 VCAN 1462 broad.mit.edu 37 5 82836890 82836890 + Missense_Mutation SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . VCAN NM_004385 exon8 c.G8068T p.A2690S CCCACGGCAACAT 115 4 0.03 64 0 0 498 130 0 0.00 TNIP1 10318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 150436337 150436337 + Missense_Mutation SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_001252385 exon6 c.C617A p.S206Y AGAATGGAGGTGC 77 12 0.16 98 0 0 98 6 0.06 LOC202181 0 broad.mit.edu 37 5 177059966 177059966 + RNA DEL T T - novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . GTGGGATTTTTTT 10 5 0.50 7 0 0 0 0 . 0 bcgsc.ca 37 5 180541994 180541994 + RNA SNP C C A novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . TACCACCGGGAAG 53 4 0.08 32 0 0 1 0 0.00 ECI2 10455 mdanderson.org 37 6 4125592 4125592 + Silent SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_206836 exon7 c.C687A p.G229G AAAACAGCCCACA 51 3 0.06 66 0 0 46 0 0.00 ZNRD1-AS1 80862 hgsc.bcm.edu 37 6 30000857 30000857 + RNA SNP A A G novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . GAATCCAAACAGA 41 6 0.15 13 0 0 0 0 GPR141 353345 broad.mit.edu 37 7 37780115 37780115 + Silent SNP C C T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . GPR141 NM_181791 exon1 c.C120T p.F40F TCTTTTCCTCCTG 170 16 0.09 100 6 0.06 79 0 0 SCRIB 23513 mdanderson.org 37 8 144886857 144886857 + Missense_Mutation SNP G G T novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_182706 exon21 c.C2890A p.P964T TGGGGGGTGAGGA 36 3 0.08 27 0 0 151 0 0.00 PGM5P2 0 broad.mit.edu 37 9 69082757 69082758 + RNA INS - - AT novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . TTAAAACAAAGAG 10 4 0.40 7 0 0 0 0 . 375748 ucsc.edu;mdanderson.org 37 9 98732886 98732886 + Missense_Mutation SNP T T C novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . . . . . GGATCATGACAGC 260 29 0.11 102 0 0 6 1 0.17 RAPGEF1 2889 mdanderson.org 37 9 134503341 134503341 + Missense_Mutation SNP T T C novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . . NM_198679 exon9 c.A1163G p.D388G CCACTGTCCCTGT 50 3 0.06 52 0 0 85 0 0.00 PNPLA4 8228 broad.mit.edu 37 X 7868821 7868821 + Missense_Mutation SNP A A G novel TCGA-2G-AAFY-01A-11D-A42Y-10 TCGA-2G-AAFY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961 533341c5-782e-418a-8db9-996ff3f09e94 . PNPLA4 NM_004650 exon7 c.T668C p.L223P GGAAAAAGGGCTT 371 5 0.01 165 0 0 24 94 0 0.00