Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CLCNKB 1188 broad.mit.edu 37 1 16383402 16383402 + Silent SNP C C T rs6698427 bycluster TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . CLCNKB NM_000085 exon20 c.C2055T p.A685A GCCAGCCCCAAAG 612 9 0.01 499 1 0.002004008 50 6 0 0.00 SSBP3 23648 broad.mit.edu 37 1 54871665 54871665 + Missense_Mutation SNP T T C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . SSBP3 NM_001009955 exon1 c.A17G p.K6R GAGCCTTTGCCTT 142 7 0.05 119 1 0.0084033613 65 15 0 0.00 DIRAS3 9077 hgsc.bcm.edu 37 1 68512245 68512245 + RNA SNP T T G novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . ACGTTTTCTACAC 65 18 0.28 61 0 0 13 8 0.62 SELL 6402 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 169680646 169680646 + Missense_Mutation SNP G G C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . SELL NM_000655 exon1 c.C33G p.S11R GGCTTTGCTTGGT 78 5 0.06 76 0 0 43 6 0 0.00 ACBD3 64746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 226334321 226334321 + Missense_Mutation SNP T T C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_022735 exon8 c.A1577G p.Y526C CTAGTATAATAGA 124 16 0.13 101 0 0 8 1 0.13 EXOC8 149371 broad.mit.edu 37 1 231472713 231472713 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . EXOC8 NM_175876 exon1 c.G779A p.R260H AAAATACGGCTCT 162 5 0.03 135 0 0 42 0 0 GDF10 2662 mdanderson.org 37 10 48429183 48429183 + Missense_Mutation SNP G G A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_004962 exon2 c.C703T p.P235S GCCGGGGCACCCC 46 3 0.07 44 0 0 0 0 MUC6 4588 bcgsc.ca 37 11 1017556 1017556 + Silent SNP G G A rs77815355 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . MUC6 NM_005961 exon31 c.C5245T p.L1749L AATGTAGGGATGT 131 11 0.08 128 2 0.015625 408 0 0 PPME1 51400 mdanderson.org 37 11 73936285 73936285 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_016147 exon5 c.G382T p.A128S CTGTCTGCAGAAA 51 3 0.06 64 0 0 7 0 0.00 NCAM1 4684 mdanderson.org 37 11 113105859 113105859 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001242607 exon16 c.G1876T p.A626S AGCGCGGCCTCCG 45 3 0.07 74 0 0 1 0 0.00 NCAM1 4684 mdanderson.org 37 11 113105886 113105886 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001242607 exon16 c.C1903T p.P635S CCAGTCCGTAAGT 42 3 0.07 65 0 0 1 0 0.00 GRIK4 2900 broad.mit.edu 37 11 120856677 120856677 + Missense_Mutation SNP A A C rs372805470 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . GRIK4 NM_014619 exon19 c.A2579C p.H860P GTATCCACCCCCG 61 15 0.25 51 11 0.2156862745 149 2 1 0.50 PDE3A 0 broad.mit.edu 37 12 20522114 20522115 + RNA INS - - GCGT rs138187101 bycluster;by1000genomes TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . PDE3A . . . . GGGAAGAGCGTGC 33 7 0.21 16 0 0 184 0 0 BAZ2A 11176 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 56995665 56995665 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . BAZ2A NM_013449 exon20 c.3743delT p.L1248fs GCTCCAGGAACCC 71 13 0.18 81 0 0 263 6 0 0.00 CLIP1 6249 hgsc.bcm.edu 37 12 122862115 122862115 + Missense_Mutation SNP A A G novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_002956 exon3 c.T478C p.S160P AGGGGGAGGAAGA 115 5 0.04 125 0 0 4 0 0.00 DDX51 317781 broad.mit.edu 37 12 132625414 132625414 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . DDX51 NM_175066 exon9 c.G1402A p.G468R AATCCCCGTCCCC 113 4 0.04 115 0 0 33 73 6 0.08 rescued with RNA-seq BASP1P1 646201 hgsc.bcm.edu 37 13 23471388 23471388 + RNA SNP A A G novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . AGAGAGAGGAGAG 37 5 0.14 45 0 0 0 0 GRK1 6011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 114321726 114321726 + Missense_Mutation SNP G G A rs184639495 bycluster;by1000genomes TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_002929 exon1 c.G25A p.V9M GAGACCGTGGTGG 38 9 0.24 78 0 0 0 0 0 ANG 283 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 21162164 21162164 + Silent SNP G G A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001097577 exon2 c.G441A p.P147P TCGTCCGTAACCA 172 11 0.06 174 0 0 24 0 0.00 AHNAK2 113146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105412772 105412772 + Missense_Mutation SNP G G A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 AHNAK2_ENST00000333244,NS,carcinoma,+2,1 AHNAK2_ENST00000333244 NM_138420 exon7 c.C9016T p.P3006S CCTTCGGCGCAGA 209 49 0.23 220 0 0 2 1 0 0 GOLGA6B 55889 hgsc.bcm.edu 37 15 72954932 72954932 + Missense_Mutation SNP G G A rs371637348 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 GOLGA6B,NS,carcinoma,+1,1 GOLGA6B NM_018652 exon11 c.G1187A p.R396Q GGCTGCGAAAGGA 292 12 0.04 277 1 0.0036101083 1 1 0 0 WASH3P 0 broad.mit.edu 37 15 102515335 102515335 + RNA SNP C C G rs201001946 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 WASH3P,NS,carcinoma,0,4 WASH3P . . . . CGAAAGCTGGAGA 51 4 0.08 41 2 0.0487804878 56 4 478 67 0.14 NTHL1 4913 mdanderson.org 37 16 2097800 2097800 + Silent SNP G G A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_002528 exon1 c.C49T p.L17L GGGTCAGCATCCT 19 2 0.11 32 0 0 117 0 0.00 ZNF205 7755 mdanderson.org 37 16 3170289 3170289 + Missense_Mutation SNP C C G novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_003456 exon7 c.C1628G p.A543G CGGCGGCGGGGGC 12 2 0.17 16 0 0 83 1 0.01 METTL9 51108 mdanderson.org 37 16 21611168 21611168 + Silent SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_016025 exon1 c.C114T p.S38S GACTAGCGGCCCG 18 2 0.11 14 0 0 9 0 0.00 EEF2K 29904 mdanderson.org 37 16 22269002 22269002 + Missense_Mutation SNP T T C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_013302 exon9 c.T940C p.C314R CATGCCTGCAACC 52 3 0.06 46 0 0 2 0 0.00 HSF4 3299 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 67200242 67200242 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . HSF4 NM_001538 exon7 c.C505T p.R169W TTGTGGCGGGAGG 99 6 0.06 125 0 0 33 7 0 0.00 DHODH 1723 mdanderson.org 37 16 72056285 72056285 + Missense_Mutation SNP C C T rs267606768 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 DHODH,colon,carcinoma,0,1 DHODH NM_001361 exon6 c.C730T p.R244W GGCTTGCGGAGAG 38 3 0.08 45 0 0 0 1 40 0 0.00 CDRT15P1 94158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 13928089 13928089 + RNA SNP C C T rs199604193 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . CAGACACGTGGTG 423 47 0.11 439 0 0 0.001 0 0 CDRT15P1 0 broad.mit.edu;ucsc.edu 37 17 13928102 13928102 + RNA SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . AGGTGGCCTGCAG 384 47 0.12 389 1 0.0025706941 1 0 0.00 GAS2L2 246176 broad.mit.edu 37 17 34077157 34077157 + Missense_Mutation SNP T T G novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 GAS2L2,right_upper_lobe,carcinoma,0,2 GAS2L2 NM_139285 exon2 c.A566C p.D189A GAGGGGTCGGGCG 93 33 0.35 92 17 0.1847826087 94 2 0 0 UNC13D 201294 mdanderson.org 37 17 73832673 73832673 + Silent SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_199242 exon14 c.C1278A p.A426A CAGCCGGGCTGGG 35 3 0.09 35 0 0 2 0 0.00 RNF157 114804 mdanderson.org 37 17 74236319 74236319 + Missense_Mutation SNP C C A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_052916 exon1 c.G3T p.M1I GGCCCCCATGGCC 18 2 0.11 20 0 0 1 0 0.00 USP36 57602 mdanderson.org 37 17 76799979 76799979 + Silent SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_025090 exon16 c.C2298A p.P766P GGGCTTGGGGGTA 46 3 0.07 47 0 0 19 0 0.00 TRAPPC8 22878 mdanderson.org 37 18 29470790 29470790 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_014939 exon12 c.G1636A p.A546T AATGTGCTGCCTG 52 3 0.06 88 0 0 1 0 0.00 MED16 10025 hgsc.bcm.edu;mdanderson.org 37 19 871976 871976 + Missense_Mutation SNP T T A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_005481 exon12 c.A2048T p.Q683L CTGTCCTGGGTAT 85 4 0.05 75 0 0 121 0 0.00 ZBTB7A 51341 mdanderson.org 37 19 4054919 4054919 + Silent SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_015898 exon2 c.G312A p.V104V GTCACCCACGTTG 37 3 0.08 21 0 0 3 0 0.00 ANKRD24 170961 mdanderson.org 37 19 4216046 4216046 + Silent SNP A A G novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_133475 exon16 c.A1269G p.P423P CCTTCCAGGTGAG 41 3 0.07 51 0 0 0 0 MAP1S 55201 mdanderson.org 37 19 17838550 17838550 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_018174 exon5 c.C2357T p.S786L CCACATCGGTCAG 38 3 0.08 56 0 0 136 0 0.00 CAPNS1 826 broad.mit.edu;mdanderson.org 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . CAPNS1 NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 116 8 0.07 54 3 0.0555555556 19 3 0 0.00 ACTN4 81 mdanderson.org 37 19 39214851 39214851 + Missense_Mutation SNP G G A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_004924 exon15 c.G1747A p.E583K GATAGGGAGCGCG 42 3 0.07 62 0 0 140 0 0.00 HIPK4 147746 mdanderson.org 37 19 40886728 40886728 + Silent SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_144685 exon3 c.C1170A p.T390T GTAGGGGGTCCCA 41 3 0.07 52 0 0 0 0 CNFN 84518 mdanderson.org 37 19 42891589 42891589 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_032488 exon3 c.G152A p.R51H GAGATGCGGCAGG 43 3 0.07 51 0 0 20 1 0.05 CARD8 22900 hgsc.bcm.edu;broad.mit.edu 37 19 48715121 48715122 + Missense_Mutation DNP TC TC AA novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 TC TC Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001184900 exon11 c.G1459T p.E487L ACCAGCTCCTTCT 195 10 0.05 275 0 0 9 0 0.00 GYS1 2997 mdanderson.org 37 19 49473946 49473946 + Missense_Mutation SNP G G A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_002103 exon14 c.C1666T p.R556W GGAACCGCCGGTC 49 3 0.06 55 1 0.0181818182 16 0 0.00 FLT3LG 2323 mdanderson.org 37 19 49979713 49979713 + Missense_Mutation SNP C C A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001204503 exon4 c.C232A p.L78M CTGGTCCTGGCAC 45 3 0.07 49 0 0 34 0 0.00 SPIB 6689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50926238 50926238 + Missense_Mutation SNP C C A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001243999 exon4 c.C283A p.L95M CCCAGCCTGGAGG 158 20 0.13 235 0 0 17 1 0.06 ALK 238 broad.mit.edu 37 2 29449808 29449808 + Missense_Mutation SNP T T C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 ALK,left_upper_lobe,carcinoma,+1,1 ALK NM_004304 exon18 c.A3047G p.E1016G CCATCCTCAGCCA 79 3 0.04 84 0 0 533 1 0 0 KANSL1L 151050 mdanderson.org 37 2 210894633 210894633 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_152519 exon10 c.C2165A p.T722N AGTTTAGTTCTTT 50 3 0.06 87 0 0 0 0 RQCD1 9125 broad.mit.edu;mdanderson.org 37 2 219458920 219458920 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . RQCD1 NM_001271634 exon9 c.G917T p.R306L CGAAACGCTGGCT 141 5 0.04 136 0 0 32 40 0 0.00 USP40 55230 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 234394589 234394589 + Missense_Mutation SNP T T C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_018218 exon28 c.A3265G p.I1089V CAGGGATGCGCAC 114 11 0.10 140 0 0 1 0 0.00 RBM44 375316 mdanderson.org 37 2 238738115 238738115 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001080504 exon13 c.G2859T p.E953D TTCTGAGCAAGAC 126 5 0.04 155 0 0 0 0 ZNF512B 57473 mdanderson.org 37 20 62595260 62595260 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_020713 exon9 c.C1487A p.P496H TCTTCAGGGCCAC 47 3 0.06 41 0 0 0 0 KRTAP10-2 386679 mdanderson.org 37 21 45970730 45970730 + Silent SNP C C A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_198693 exon1 c.G612T p.G204G GGAAGCCCCAGAG 62 3 0.05 32 0 0 2 0 0.00 MIR658 724028 mdanderson.org 37 22 38240339 38240339 + RNA SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . CAGCGAGCTGGCG 23 3 0.13 23 0 0 1 0 0.00 CPT1B 1375 mdanderson.org 37 22 51016211 51016211 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001145135 exon2 c.G134A p.R45H TTGATGCGGATCA 58 3 0.05 44 0 0 8 0 0.00 SLC4A7 9497 mdanderson.org 37 3 27493948 27493948 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001258379 exon2 c.C90A p.S30R AGTTGAGCTAGTT 46 3 0.07 50 0 0 0 0 ACTR8 93973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 53910015 53910015 + Missense_Mutation SNP C C T rs375966881 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_022899 exon7 c.G871A p.V291I AGCATACACTTGT 159 24 0.15 192 0 0 25 9 0.36 LEKR1 389170 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 156763256 156763256 + Missense_Mutation SNP C C A rs150686576 alternate_allele TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . LEKR1 NM_001004316 exon13 c.C1796A p.P599Q TCTCACCGTGTTC 146 14 0.10 162 1 0.0061728395 66 0 0 LYAR 55646 mdanderson.org 37 4 4285380 4285380 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001145725 exon3 c.C90A p.C30X AGAAAGGCATTCA 29 3 0.10 42 0 0 103 0 0.00 BMP2K 55589 broad.mit.edu 37 4 79792085 79792085 + Missense_Mutation SNP G G C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 BMP2K_ENST00000502871,NS,carcinoma,0,7 BMP2K NM_017593 exon11 c.G1380C p.Q460H TCACCAGCAGCAG 47 4 0.09 57 0 0 169 7 3 0 0.00 TRIM23 373 broad.mit.edu 37 5 64905170 64905170 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . TRIM23 NM_033228 exon6 c.G944A p.R315H TTTTCACGAACAT 227 6 0.03 265 0 0 73 0 0 PCDHB4 0 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140501959 140501959 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . PCDHB4 NM_018938 exon1 c.G379T p.D127Y ATAAATGATCACT 126 27 0.21 127 1 0.0078740157 177 0 0 FAM114A2 10827 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 153381928 153381928 + Missense_Mutation SNP C C T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_018691 exon11 c.G1139A p.R380Q AGGCTCCGGATTG 174 9 0.05 163 0 0 14 1 0.07 MIR2113 0 broad.mit.edu 37 6 98472767 98472767 + RNA DEL A A - novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . ATATGTAAAAAAA 6 2 0.33 10 0 0 0 0 PRKAR1B 5575 mdanderson.org 37 7 624155 624155 + Silent SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_002735 exon8 c.C759A p.V253V GATGGAGACCTTG 43 3 0.07 54 0 0 208 0 0.00 CARD11 84433 mdanderson.org 37 7 2962882 2962882 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_032415 exon16 c.C2026A p.L676I AGGTGAGGCTGTC 31 3 0.10 31 0 0 18 0 0.00 MPP6 51678 mdanderson.org 37 7 24705705 24705705 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_016447 exon9 c.G949T p.A317S AGAAATGCAGGTA 36 3 0.08 45 0 0 1 0 0.00 TRRAP 8295 broad.mit.edu 37 7 98601961 98601961 + Silent SNP G G A rs377353131 TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 TRRAP_ENST00000359863,NS,carcinoma,+1,2 TRRAP NM_001244580 exon67 c.G10416A p.S3472S TTTCTCGGCACAG 196 5 0.03 145 0 0 863 2 21 1 0.05 rescued with RNA-seq TMEM55A 55529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 92033608 92033608 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_018710 exon2 c.C131A p.A44D GCAATGGCTGTAT 56 9 0.16 49 0 0 5 0 0.00 PLEC 5339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 144991455 144991455 + Missense_Mutation SNP C C A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_201380 exon32 c.G12945T p.W4315C CTCCTCCCACTCG 33 4 0.12 43 0 0 147 36 0.24 . 0 broad.mit.edu 37 9 66465300 66465300 + RNA DEL A A - novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . TTTAGCACCCGCT 7 2 0.29 3 0 0 1 0 0.00 VSIG4 11326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 65253547 65253547 + Missense_Mutation SNP C C A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . NM_001100431 exon2 c.G181T p.G61C CTGAGCCACGTTG 179 54 0.30 153 0 0 5 0 0.00 NXF4 55999 hgsc.bcm.edu 37 X 101819124 101819124 + RNA SNP G G C novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . TCTCCTGTCTCTC 105 8 0.08 83 0 0 0 0 MMGT1 93380 broad.mit.edu 37 X 135055906 135055906 + Missense_Mutation SNP T T G novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . MMGT1 . . . . GGCGGGTGTCCGC 94 20 0.21 62 14 0.2258064516 14 0 0 BRCC3 79184 broad.mit.edu 37 X 154348401 154348401 + Missense_Mutation SNP G G T novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . BRCC3 NM_024332 exon11 c.G927T p.M309I GCTTATGCAAGAA 150 4 0.03 100 0 0 44 6 0 0.00 UNC93B1 81622 mdanderson.org 37 11 67770593 67770593 + Silent SNP C C A novel TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . ATACTTCACCTCG 51 3 0.06 51 0 0 21 0 0.00 PCSK6 5046 mdanderson.org 37 15 101922323 101922323 + Nonsense_Mutation SNP A A T rs1058260 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAFM-01A-11D-A42Y-10 TCGA-2G-AAFM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8be26d25-830f-4431-baf5-beeeef18d14b f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0 . . . . . . GGCCACACACATG 44 3 0.07 85 0 0 5 0 0.00