Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MTHFR 4524 broad.mit.edu 37 1 11854879 11854879 + Missense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . MTHFR NM_005957 exon7 c.G1073A p.R358Q TCCTCTCGGCGCT 111 4 0.04 83 0 0 65 11 0 0.00 MST1P2 11209 hgsc.bcm.edu 37 1 16974458 16974458 + RNA SNP G G C rs57783259 TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . GGTGGGGGGGCGG 484 28 0.06 244 0 0 1 0 0.00 CROCC 9696 broad.mit.edu 37 1 17270665 17270665 + Missense_Mutation SNP G G A rs199948035 TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . CROCC NM_014675 exon14 c.G1879A p.E627K GAGCGGGAGAAGC 118 6 0.05 75 3 0.04 185 26 0 0.00 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 19483407 19483407 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_020765 exon41 c.C5773T p.Q1925X AGAGCTGCAGAAC 292 43 0.15 226 0 0 25 1 0.04 PARS2 25973 broad.mit.edu 37 1 55224781 55224781 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f PARS2,NS,carcinoma,0,2 PARS2 NM_152268 exon2 c.C54A p.S18R CTGGCGGCTGCAG 133 7 0.05 114 1 0.0087719298 29 2 23 0 0.00 RPL5 6125 broad.mit.edu 37 1 93300360 93300361 + Frame_Shift_Ins INS - - AT novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . RPL5 NM_000969 exon4 c.214_215insAT p.D72fs GAGGGGGATATGA 40 7 0.18 32 0 0 38 2622 0 0.00 TCHH 7062 broad.mit.edu 37 1 152084619 152084621 + In_Frame_Del DEL CTC CTC - novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 CTC CTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . TCHH NM_007113 exon3 c.1072_1074del p.358_358del GCGCCTCTCCTCC 25 7 0.28 10 0 0 275 0 0 PCP4L1 654790 broad.mit.edu 37 1 161254255 161254255 + Missense_Mutation SNP A A G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . PCP4L1 NM_001102566 exon3 c.A191G p.K64R GGAAAAAGGATCC 534 5 0.01 405 2 0.0049382716 7 0 0 MFSD4 148808 broad.mit.edu;mdanderson.org 37 1 205538281 205538281 + Silent SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . MFSD4 NM_181644 exon1 c.C84T p.F28F CAGCTTCGGCCTG 94 5 0.05 59 0 0 46 0 0 LINC00467 84791 hgsc.bcm.edu 37 1 211591127 211591127 + RNA SNP A A G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . GCGGCAATGAGGG 396 66 0.17 246 0 0 4 0 0.00 OR2T4 127074 hgsc.bcm.edu 37 1 248525639 248525640 + Missense_Mutation DNP AT AT CC novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 AT AT Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f OR2T4,brain,glioma,+1,1 OR2T4 NM_001004696 exon1 c.T758C p.I253P TTACTCATCCTCC 657 17 0.03 461 1 0.0021691974 1 1 0 0 FAM208B 54906 mdanderson.org 37 10 5788743 5788743 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_017782 exon15 c.G3359A p.G1120D AGAAGGGCACTAA 87 4 0.05 59 0 0 27 0 0.00 TAF5 6877 mdanderson.org 37 10 105147455 105147455 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_006951 exon10 c.G2185T p.G729C GCATCAGGTAAAT 24 3 0.13 40 0 0 27 0 0.00 SPON1 10418 broad.mit.edu 37 11 14101781 14101782 + RNA INS - - T rs11432678 bycluster;by1000genomes TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . SPON1 . . . . TTTTTTCTTTTTT 9 3 0.33 6 0 0 65 0 0 MIR1908 100302263 mdanderson.org 37 11 61582704 61582704 + RNA SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . GCCGCGGCATTCC 45 3 0.07 49 0 0 0 0 RTN3 10313 broad.mit.edu 37 11 63488321 63488321 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . RTN3 NM_001265589 exon3 c.G2347T p.E783X GCTCCAGAATCTT 75 5 0.07 72 0 0 104 3 0 0.00 FAM86C2P 645332 bcgsc.ca 37 11 67560715 67560715 + RNA SNP C C T rs184691350 bycluster TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . GGGAAACAGTTTC 279 25 0.09 286 8 0.027972028 2 0 0.00 FAM86C2P 645332 bcgsc.ca 37 11 67560756 67560757 + RNA DNP CA CA TG novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 CA CA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . TGATCCCAGCCCG 289 28 0.10 273 13 0.0476190476 2 0 0.00 BUD13 84811 mdanderson.org 37 11 116633790 116633790 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001159736 exon4 c.C515A p.S172X GTGTCTGAGTCAT 49 3 0.06 56 1 0.0178571429 16 0 0.00 KRT73 319101 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 53002138 53002138 + Missense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_175068 exon9 c.G1465A p.G489R AGCCCCCGCTGAC 112 14 0.13 52 0 0 0 0 LOC643339 0 broad.mit.edu 37 12 93517618 93517619 + RNA INS - - A rs200193906 bycluster;by1000genomes TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . AATAAATAAAAAA 6 4 0.67 8 0 0 0 0 SELPLG 0 broad.mit.edu 37 12 109017521 109017521 + Missense_Mutation SNP C C G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . SELPLG NM_001206609 exon2 c.G611C p.G204A TCCAGGCCTGTGG 185 9 0.05 113 2 0.017699115 138 75 0 0.00 CCDC64 92558 mdanderson.org 37 12 120427769 120427769 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_207311 exon1 c.G97A p.A33T GGGGACGCAGTCC 23 2 0.09 14 0 0 22 0 0.00 TMEM132B 114795 broad.mit.edu 37 12 125834096 125834096 + Missense_Mutation SNP T T C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . TMEM132B NM_052907 exon2 c.T151C p.F51L GAGTCCTTTTTCC 337 4 0.01 163 0 0 207 1 0 0.00 NKX2-1 7080 broad.mit.edu 37 14 36988467 36988467 + Silent SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . NKX2-1 NM_001079668 exon2 c.C186A p.G62G GAGGCCGCCGCCC 138 4 0.03 79 2 0.0253164557 21 0 0 OTX2 5015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 57271040 57271040 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001270525 exon2 c.C139T p.R47C CCCGGCGCTGTTT 191 31 0.16 109 0 0 33 9 0.27 TDRD9 122402 mdanderson.org 37 14 104481101 104481101 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_153046 exon21 c.C2146T p.Q716X ATCTCACAGTTCA 66 3 0.05 60 0 0 4 0 0.00 UBN1 29855 ucsc.edu 37 16 4925276 4925276 + Silent SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . UBN1 NM_001079514 exon15 c.G2865A p.G955G AGCAGGGAAAAAA 97 1 0.01 81 0 0 88 34 6 0.18 C16orf62 57020 broad.mit.edu 37 16 19612991 19612991 + Missense_Mutation SNP C C A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . C16orf62 NM_020314 exon9 c.C997A p.L333I GGAAAGCTCGTGT 110 7 0.06 111 1 0.009009009 164 33 0 0.00 SLC6A10P 0 broad.mit.edu 37 16 32890622 32890622 + RNA SNP T T G rs689942 bycluster TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . GGTGTTTTTGTAG 120 10 0.08 93 1 0.0107526882 1 0 0.00 PKD1L2 114780 mdanderson.org 37 16 81213378 81213378 + Missense_Mutation SNP A A T rs4889261 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001076780 exon13 c.T2132A p.L711Q GCATCCAGGAGGG 87 2 0.02 95 0 0 0 0 CMIP 80790 mdanderson.org 37 16 81737575 81737575 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f CMIP,NS,carcinoma,+1,2 CMIP NM_198390 exon18 c.G1976A p.G659D GCTCCGGCTCCTT 36 3 0.08 49 0 0 1 2 95 0 0.00 ZC3H18 124245 broad.mit.edu 37 16 88677720 88677721 + In_Frame_Ins INS - - GAGCGG novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f ZC3H18,colon,carcinoma,0,2 ZC3H18 NM_144604 exon8 c.1251_1252insGAGCGG p.R417delinsRER CGAGCGCGAGCGG 60 8 0.13 60 0 0 90 2 40 0 0.00 UBB 7314 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 17 16285479 16285479 + Silent SNP C C G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_018955 exon2 c.C258G p.G86G GACCGGCAAGACC 106 13 0.12 95 0 0 2236 330 0.15 . 0 broad.mit.edu 37 17 16748911 16748913 + RNA DEL GCT GCT - novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 GCT GCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . CTCAAAGCTGCTG 207 8 0.04 170 1 0.0058823529 1 0 0.00 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29496939 29496939 + Silent SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001128147 exon5 c.C510T p.D170D AGAAGACAATGTT 96 13 0.14 93 0 0 4 2 0.50 C17orf98 388381 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 36997456 36997456 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001080465 exon1 c.C187T p.L63F GCAAAAGGGGCGG 111 18 0.16 59 0 0 1 1 1.00 CDC27 996 mdanderson.org 37 17 45234325 45234325 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001114091 exon7 c.C796T p.R266X AACTTCGACCAGT 64 3 0.05 58 1 0.0172413793 42 0 0.00 HOXB9 3219 mdanderson.org 37 17 46703562 46703562 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_024017 exon1 c.C70A p.P24T CTGGAGGCGCGTC 10 2 0.20 10 0 0 0 0 GGA3 23163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73237088 73237088 + Missense_Mutation SNP C C A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_138619 exon11 c.G997T p.D333Y TCGTGTCCAGCTC 176 20 0.11 112 0 0 35 10 0.29 ELP2 55250 mdanderson.org 37 18 33726314 33726314 + Silent SNP G G A rs143713231 byfrequency TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001242875 exon12 c.G1290A p.L430L AGCGTTGCACCTT 99 5 0.05 149 0 0 0.001 69 0 0.00 PLIN5 440503 mdanderson.org 37 19 4531721 4531721 + Silent SNP G G T rs377467819 alternate_allele TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001013706 exon3 c.C174A p.R58R AGCCAGGCGGCAG 44 3 0.07 22 0 0 0 0 PNPLA6 10908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 7615464 7615464 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001166111 exon18 c.C2035T p.Q679X GTGATCCAGCGAG 160 20 0.13 74 0 0 64 6 0.09 ZNF699 374879 broad.mit.edu;ucsc.edu 37 19 9407511 9407511 + Missense_Mutation SNP G G C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f ZNF699,NS,carcinoma,-1,1 ZNF699 NM_198535 exon5 c.C569G p.T190S ACTTCAGTATTTC 183 27 0.15 142 2 0.014084507 67 1 11 1 0.09 BST2 0 broad.mit.edu 37 19 17516586 17516587 + RNA INS - - T rs28413175 bycluster;by1000genomes TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . BST2 . . . . GGTGGGCTTTTTT 8 5 0.63 4 0 0 28 0 0 ZNF676 163223 bcgsc.ca 37 19 22363736 22363736 + Silent SNP T T G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . ZNF676 NM_001001411 exon3 c.A783C p.G261G ACTAAATCCTTTG 71 3 0.04 55 0 0 146 81 0 0.00 ZNF99 7652 hgsc.bcm.edu 37 19 22940462 22940463 + Missense_Mutation DNP AC AC CT novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 AC AC Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f ZNF99,colon,carcinoma,+2,1 ZNF99 NM_001080409 exon4 c.G2248A p.V659R TTATGTACAGTAA 54 4 0.07 34 1 0.0294117647 2 1 7 0 0.00 LGI4 163175 broad.mit.edu 37 19 35625538 35625538 + Missense_Mutation SNP A A C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f LGI4,pharynx,carcinoma,0,1 LGI4 NM_139284 exon1 c.T47G p.V16G ACCACCACCCCCG 82 18 0.22 55 6 0.1090909091 32 1 1 0 0.00 ZNF567 163081 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 37211070 37211071 + Frame_Shift_Del DEL TG TG - novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 TG TG Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . ZNF567 NM_152603 exon4 c.1350_1351del p.450_451del CCTCACTGTGGGA 134 19 0.14 125 0 0 61 24 0 0.00 RYR1 6261 mdanderson.org 37 19 38958286 38958286 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f RYR1,colon,carcinoma,0,3 RYR1 NM_001042723 exon25 c.G3215A p.R1072H GGGTGCGCATCTT 72 4 0.06 56 0 0 0 3 14 0 0.00 HNRNPL 3191 broad.mit.edu 37 19 39338057 39338057 + Silent SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f HNRNPL,NS,carcinoma,0,2 HNRNPL NM_001533 exon2 c.G285A p.P95P TTTGTGCGGGTCA 106 4 0.04 71 0 0 67 2 382 0 0.00 ZNF528 84436 mdanderson.org 37 19 52919465 52919465 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_032423 exon7 c.G1360T p.A454S CTTACTGCCCATT 123 5 0.04 104 0 0 35 0 0.00 DNAH6 1768 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 84838859 84838859 + Missense_Mutation SNP A A T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . DNAH6 NM_001370 exon22 c.A3356T p.D1119V CTCCAGACATTCA 558 76 0.14 497 1 0.0020120724 194 0 0 CNNM3 26505 mdanderson.org 37 2 97482998 97482998 + Silent SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_017623 exon1 c.C984T p.D328D GCTGGACGCCAGC 42 3 0.07 27 0 0 33 0 0.00 KIF5C 3800 broad.mit.edu 37 2 149866823 149866823 + Missense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . KIF5C NM_004522 exon24 c.C2725T p.R909W GCCGTGCGGGCCA 261 7 0.03 214 0 0 166 1 0 0.00 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179399008 179399008 + Missense_Mutation SNP A A T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001267550 exon358 c.T102334A p.S34112T CACAGGAGATCCG 181 53 0.29 131 0 0 0 0 MPP4 58538 broad.mit.edu 37 2 202549823 202549823 + Missense_Mutation SNP C C A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f MPP4,NS,carcinoma,0,1 MPP4 NM_033066 exon7 c.G538T p.A180S TCCTGGCCACCAA 145 7 0.05 108 1 0.0092592593 93 1 0 0 IKZF2 22807 broad.mit.edu 37 2 214012404 214012405 + Frame_Shift_Del DEL AA AA - rs112988286 bycluster TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 AA AA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . IKZF2 . . . . ACACACAAAAAAA 63 0 0.00 47 0 0 71 0 0 ANO7 50636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242163124 242163124 + Missense_Mutation SNP C C G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f ANO7,colon,carcinoma,+1,1 ANO7 NM_001001891 exon23 c.C2622G p.D874E GCCTGACATCCCA 212 50 0.24 129 0 0 1 1 5 1 0.20 FRG1B 284802 hgsc.bcm.edu 37 20 29625928 29625928 + RNA SNP G G C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . GAACTTGTTGGGC 123 6 0.05 138 0 0 113 0 0.00 KCNS1 3787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 43726455 43726455 + Silent SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_002251 exon4 c.C958T p.L320L CCAGCAGCGTGAG 62 16 0.26 39 0 0 5 2 0.40 BAGE2 85319 broad.mit.edu 37 21 11045626 11045626 + RNA DEL G G - rs56675609 bycluster;alternate_allele TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . AAATAAGATGTGA 6 4 0.67 4 0 0 0 0 MORC3 23515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 37705948 37705948 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_015358 exon2 c.G44T p.C15F AGCTTTGCCCGAA 155 20 0.13 103 0 0 16 3 0.19 COL18A1 80781 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 46909431 46909431 + Missense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_030582 exon18 c.C2495T p.A832V CGGGGGCGAAGGT 126 14 0.11 56 0 0 115 5 0.04 CARD10 29775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37912055 37912055 + Missense_Mutation SNP C C A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_014550 exon3 c.G624T p.M208I GGCGATCATGTAG 224 31 0.14 117 0 0 75 18 0.24 CELSR1 9620 broad.mit.edu 37 22 46765084 46765084 + Silent SNP T T C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . CELSR1 NM_014246 exon27 c.A7944G p.K2648K GATCCCTTTTTTC 220 4 0.02 150 0 0 242 16 0 0.00 TUBGCP6 85378 mdanderson.org 37 22 50657310 50657310 + Missense_Mutation SNP G G T rs144740402 bycluster;by1000genomes;alternate_allele TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f TUBGCP6,NS,carcinoma,+1,1 TUBGCP6 NM_020461 exon21 c.C4643A p.T1548K CCGGGCGTTTGCC 59 3 0.05 39 0 0 1 1 48 0 0.00 FBXL2 25827 mdanderson.org 37 3 33416789 33416789 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_012157 exon10 c.G667T p.D223Y ATCACGGATGAAG 58 3 0.05 48 0 0 0 0 STAB1 23166 mdanderson.org 37 3 52542370 52542370 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_015136 exon21 c.G2230T p.G744C GGCAAAGGCAATG 50 3 0.06 39 0 0 16 0 0.00 PBRM1 55193 broad.mit.edu 37 3 52677350 52677350 + Silent SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . PBRM1 NM_018313 exon10 c.C909A p.S303S CAAGTTGGATGGA 126 4 0.03 78 0 0 1252 25 0 0.00 DHFRL1 200895 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 93779801 93779803 + In_Frame_Del DEL CTT CTT - novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 CTT CTT Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . DHFRL1 NM_001195643 exon2 c.554_556del p.185_186del ATCATCCTTCTCA 94 10 0.11 98 0 0 25 2 0 0.00 SLC1A3 6507 mdanderson.org 37 5 36677031 36677031 + Missense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_004172 exon6 c.C605T p.P202L AAGTGCCCATCCA 61 3 0.05 81 0 0 9 0 0.00 CCDC152 100129792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 42799496 42799496 + Missense_Mutation SNP G G C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001134848 exon8 c.G578C p.R193T TAGCAAGAGTTCA 145 26 0.18 198 0 0 20 6 0.30 ZSWIM6 57688 mdanderson.org 37 5 60628422 60628422 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_020928 exon1 c.G323A p.R108H AGCGCCGCATAGT 58 3 0.05 46 0 0 0 0 NSD1 64324 broad.mit.edu 37 5 176638303 176638303 + Missense_Mutation SNP A A G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f NSD1_ENST00000439151,colon,carcinoma,0,2 NSD1 NM_022455 exon5 c.A2903G p.K968R AGAAAAAGGGAGA 210 3 0.01 223 1 0.0044843049 416 2 40 0 0.00 HIST1H3C 8352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26045698 26045698 + Silent SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_003531 exon1 c.G60A p.Q20Q CAAGCAGCTTGCT 165 33 0.20 103 0 0 27 8 0.30 BTN2A3P 54718 hgsc.bcm.edu;broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f BTN2A3,NS,carcinoma,0,9 BTN2A3 . . . . ATGGAACCAGCTG 73 5 0.07 47 0 0 0 9 3 0 0.00 CDSN 1041 mdanderson.org 37 6 31084507 31084507 + Silent SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001264 exon2 c.C885A p.G295G CTCGTAGCCACCA 49 3 0.06 32 0 0 0 0 HLA-DQB2 3120 ucsc.edu 37 6 32726742 32726742 + Silent SNP A A G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . HLA-DQB2 NM_001198858 exon3 c.T531C p.N177N GTCACCATTCCTA 163 2 0.01 136 0 0 22 94 27 0.29 rescued with RNA-seq CUL9 23113 mdanderson.org 37 6 43153342 43153342 + Silent SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_015089 exon3 c.G744T p.L248L TCATCTGCCTCAG 32 3 0.09 24 0 0 6 0 0.00 POPDC3 64208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 105609640 105609640 + Missense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_022361 exon2 c.G145A p.G49R GGAGCCCGAAGAA 157 21 0.13 147 0 0 0 0 INTS4L2 0 broad.mit.edu 37 7 65150814 65150815 + RNA INS - - C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . CATCCCTCACCCC 90 8 0.09 47 0 0 0 0 SEMA3E 9723 broad.mit.edu 37 7 83277770 83277770 + Missense_Mutation SNP T T G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . SEMA3E NM_012431 exon1 c.A89C p.H30P CGGGGGTGGGTAG 296 47 0.16 145 20 0.1379310345 125 0 0 EPHB4 2050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100419938 100419938 + Missense_Mutation SNP A A C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_004444 exon4 c.T763G p.C255G GAGCACAGCTGCA 126 15 0.12 47 0 0 656 181 0.28 PRSS3P2 0 broad.mit.edu 37 7 142482025 142482025 + RNA DEL A A - novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . GTGCCCACATGGA 43 14 0.33 31 2 0.064516129 0 0 MFHAS1 9258 broad.mit.edu 37 8 8749216 8749216 + Silent SNP A A G novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . MFHAS1 NM_004225 exon1 c.T1353C p.P451P AGGGGGAGGTGAC 91 3 0.03 63 0 0 58 19 0 0.00 PCMTD1 115294 mdanderson.org 37 8 52733270 52733270 + Missense_Mutation SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_052937 exon6 c.G715A p.A239T TGACAGCACAGGG 78 5 0.06 59 0 0 41 0 0.00 COL22A1 169044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139629170 139629170 + Missense_Mutation SNP G G A novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f COL22A1,right_upper_lobe,carcinoma,-1,1 COL22A1 NM_152888 exon54 c.C3857T p.A1286V CCGGGTGCACCAG 91 17 0.19 88 0 0 -1 1 48 13 0.27 FAM214B 80256 hgsc.bcm.edu 37 9 35106621 35106621 + Missense_Mutation SNP G G A rs373199885 TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f KIAA1539,NS,carcinoma,+1,1 KIAA1539 NM_025182 exon5 c.C973T p.R325W CCTTCCGGAGGCT 66 3 0.05 42 0 0 1 1 102 0 0.00 SPATA31D5P 0 broad.mit.edu 37 9 84530744 84530744 + RNA SNP T T C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . . . . . CTCCCCTTTTCCC 158 3 0.02 96 0 0 0 0 ODF2 4957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131262420 131262420 + Silent SNP C C T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_153435 exon21 c.C2568T p.S856S CCGCAGCATGCAG 119 37 0.31 84 0 0 130 72 0.55 IER5L 389792 mdanderson.org 37 9 131939453 131939453 + Silent SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_203434 exon1 c.C879A p.G293G CGCCAGGCCCGGT 43 3 0.07 20 0 0 18 0 0.00 COX1 4512 broad.mit.edu 37 MT 5989 5989 + Missense_Mutation SNP T T C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . ENST00000361624 exon1 c.T86C p.L29P GAGTCCTAGGCAC 45 3 0.07 23 0 0 0 0 FRMPD4 9758 mdanderson.org 37 X 12734431 12734431 + Missense_Mutation SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_014728 exon15 c.G1853T p.C618F CCCCCTGTGAGGC 57 3 0.05 38 0 0 1 0 0.00 SUPT20HL1 100130302 hgsc.bcm.edu 37 X 24382423 24382423 + Missense_Mutation SNP G G C novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_001136234 exon1 c.G1546C p.A516P GCTGCTGCTGCTC 160 9 0.06 71 0 0 0 0 RGN 9104 mdanderson.org 37 X 46951545 46951545 + Silent SNP G G T novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_004683 exon6 c.G780T p.V260V GTATGTGACCTGC 126 5 0.04 93 0 0 0 0 AR 367 hgsc.bcm.edu 37 X 66765222 66765223 + Missense_Mutation DNP GC GC AG novel TCGA-2G-AAFH-01A-12D-A42Y-10 TCGA-2G-AAFH-10A-01D-A433-10 GC GC Unknown Untested Somatic . WXS none Illumina HiSeq 258cf1c4-41c5-4e54-ad57-0961483d99ba bb501e72-c643-4afb-b1e8-56593b08cb2f . . NM_000044 exon1 c.C235G p.Q79E GCAGCAGCAGCAA 145 8 0.06 107 0 0 0 0