Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	.	.	.	.	AACTTACTGTTGT		32	3	0.09	29	0	0				0	0				
SZT2	23334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43868935	43868935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	SZT2	NM_015284	exon2	c.114delT	p.H38fs	AGTCATCTGCACC		108	18	0.17	117	0	0		383		12	0	0.00			
FAF1	11124	mdanderson.org	37	1	51171496	51171496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_007051	exon7	c.T619C	p.Y207H	GGTTGTACTCCCG		57	3	0.05	81	1	0.012345679				158	1	0.01			
PTPN22	26191	mdanderson.org	37	1	114391245	114391245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001193431	exon11	c.C832A	p.Q278K	CATATTGTTCCTG		34	3	0.09	50	0	0				14	0	0.00			
DNM3	26052	mdanderson.org	37	1	171810899	171810899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_015569	exon1	c.G103A	p.A35T	CAGATCGCCGTGG		43	3	0.07	35	0	0				2	0	0.00			
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578005	1578005	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	.	.	.	.	TGAGTTCCCTTGC		123	6	0.05	106	0	0				0	0				
ITIH5	80760	mdanderson.org	37	10	7614301	7614301	+	Missense_Mutation	SNP	C	C	T	rs141124086	bycluster;by1000genomes	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001001851	exon12	c.G2093A	p.S698N	AGGATGCTGGCAA		44	3	0.07	38	0	0	0			0	0				
ZFYVE27	118813	broad.mit.edu	37	10	99498419	99498419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	ZFYVE27	NM_001002261	exon1	c.G185A	p.R62Q	GTGTTCGATACTT		109	4	0.04	135	0	0		31		20	0	0.00			
MUC2	4583	mdanderson.org	37	11	1082661	1082661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_002457	exon15	c.G1910A	p.R637H	ACGCGCGCGCCTG		29	3	0.10	56	0	0				0	0				
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57576927	57576927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001085458	exon15	c.C2424G	p.I808M	GTTGATCAACAAA		55	14	0.25	85	0	0				136	63	0.46			
VWCE	220001	mdanderson.org	37	11	61042028	61042028	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_152718	exon12	c.C1524T	p.Y508Y	GTCTGCGTACCAC		47	3	0.06	85	0	0				8	0	0.00			
LTBP3	4054	broad.mit.edu	37	11	65313978	65313978	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	LTBP3	NM_001130144	exon16	c.2288delC	p.P763fs	GAGCCCGGGAGGT		6	2	0.33	17	0	0		55		13	0	0.00			
PDE2A	5138	mdanderson.org	37	11	72288474	72288474	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	PDE2A_ENST00000544570,NS,carcinoma,-1,3	PDE2A_ENST00000544570	NM_002599	exon31	c.G2780C	p.G927A	CTAGTGCCATCCA		48	3	0.06	57	0	0		-1	3	52	0	0.00			
TECTA	7007	ucsc.edu;bcgsc.ca	37	11	120996448	120996448	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	TECTA	NM_005422	exon7	c.G1641T	p.V547V	TTTTGTGCACAGC		41	4	0.10	82	0	0		329		0	0				
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	A	rs121913240	bycluster	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182T	p.Q61L	TCCTCTTGACCTG		132	19	0.14	124	0	0		1	429	108	15	0.14			
.	0	broad.mit.edu	37	12	40590305	40590306	+	RNA	DEL	AC	AC	-	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	AC	AC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	.	.	.	.	ATGCTTACACACA		13	4	0.31	8	0	0				0	0				
FAM186A	121006	broad.mit.edu	37	12	50746486	50746486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	FAM186A_ENST00000327337,NS,carcinoma,0,1	FAM186A	NM_001145475	exon4	c.A4129C	p.T1377P	GCTGAGTGGTGAG		204	11	0.05	127	2	0.0157480315		181	1	1	0	0.00			
PA2G4	5036	bcgsc.ca;mdanderson.org	37	12	56500421	56500421	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PA2G4	NM_006191	exon2	c.G138T	p.L46L	GGTACTGAGCCTG		76	5	0.07	53	0	0		24		814	0	0.00			
BASP1P1	0	broad.mit.edu	37	13	23471375	23471376	+	RNA	DEL	GA	GA	-	rs140160855	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	GA	GA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	.	.	.	.	GGAGAGGAGAGAG		52	7	0.13	67	0	0				0	0				
ACIN1	22985	hgsc.bcm.edu;mdanderson.org	37	14	23549896	23549896	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001164814	exon6	c.G822A	p.E274E	CTCCTCCTCTTCT		93	4	0.04	95	0	0				59	0	0.00			
C14orf23	387978	mdanderson.org	37	14	29261443	29261443	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	.	.	.	.	GCCTCTGGCTCCA		49	3	0.06	82	0	0				0	0				
SIX6	4990	mdanderson.org	37	14	60976369	60976369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	SIX6,colon,carcinoma,0,1	SIX6	NM_007374	exon1	c.G253A	p.A85T	TCGCACGCCAAGC		48	4	0.08	49	0	0		0	1	0	0				
SYNE2	23224	broad.mit.edu	37	14	64675556	64675556	+	Silent	SNP	C	C	A	rs201056822	by1000genomes;alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	SYNE2	NM_182914	exon101	c.C18282A	p.S6094S	CGACTCCGATGCC		74	3	0.04	105	1	0.0095238095		577		225	0	0.00			
CILP	8483	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	65490079	65490079	+	Missense_Mutation	SNP	C	C	T	rs376060973		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	CILP	NM_003613	exon9	c.G2545A	p.V849I	GAGGGACGCCAAT		29	4	0.14	19	0	0		124		10	1	0.10			
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30749732	30749732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	SRCAP,NS,carcinoma,-1,1	SRCAP	NM_006662	exon34	c.C8371A	p.P2791T	GGAAGCCCGTCTG		65	11	0.17	56	0	0		-1	1	142	32	0.23			
PIEZO1	9780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88786808	88786808	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PIEZO1	NM_001142864	exon41	c.C5934T	p.G1978G	CCAGAAGCCAAAA		46	7	0.15	70	0	0		79		28	6	0.21			
NEURL4	84461	mdanderson.org	37	17	7226392	7226392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001005408	exon15	c.G2468A	p.C823Y	AGGTCACACCCAT		48	3	0.06	70	0	0				22	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		146	6	0.04	210	7	0.0333333333				23	12	0.52			
CNP	1267	mdanderson.org	37	17	40125872	40125872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_033133	exon4	c.G1196T	p.G399V	ACTACGGGAAAGG		37	3	0.08	32	0	0				99	0	0.00			
SLC4A1	6521	mdanderson.org	37	17	42330687	42330687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_000342	exon17	c.C2110A	p.L704M	GGTCCAGGTGGAA		55	3	0.05	63	0	0				1	0	0.00			
RGS9	8787	mdanderson.org	37	17	63221584	63221584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	RGS9,NS,carcinoma,0,1	RGS9	NM_003835	exon18	c.G1872T	p.L624F	ACGATTGAAATCC		17	2	0.12	21	0	0		0	1	0	0				
AFMID	125061	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	76198677	76198677	+	Silent	SNP	G	G	T	rs189378031	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	AFMID,NS,carcinoma,+1,1	AFMID	NM_001145526	exon3	c.G252T	p.S84S	CGAGTCGTCTGAA		67	8	0.12	83	0	0		1	1	17	4	0.24			
MUC16	94025	mdanderson.org	37	19	9025604	9025604	+	Silent	SNP	A	A	G	rs200791776		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_024690	exon15	c.T36850C	p.L12284L	AGGTCAATCTGCA		91	7	0.08	119	3	0.025210084				0	0				
GREB1	9687	ucsc.edu	37	2	11720844	11720844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	GREB1	NM_148903	exon7	c.C787T	p.H263Y	TCTGATCACCCCT		47	5	0.11	59	0	0		308		12	0	0.00			
CREG2	200407	mdanderson.org	37	2	102003876	102003876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_153836	exon1	c.G44A	p.R15H	GAGAGGCGGGTCC		18	2	0.11	23	0	0				1	0	0.00			
FMNL2	114793	mdanderson.org	37	2	153497328	153497328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_052905	exon25	c.G3069T	p.R1023S	AAAGAGGCAGCAG		47	3	0.06	66	0	0				143	0	0.00			
FAP	2191	mdanderson.org	37	2	163075681	163075681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_004460	exon8	c.C499A	p.Q167K	TGTTTTGATAGAC		38	3	0.08	60	0	0				0	0				
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	173349559	173349559	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001079818	exon12	c.A1599G	p.L533L	TGGGCTATCCTCA		117	21	0.18	102	0	0				198	40	0.20			
ATIC	471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	216209567	216209568	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	ATIC	NM_004044	exon13	c.1292_1293del	p.431_431del	GTCTAACTCTGTG		114	19	0.17	116	0	0		84		691	0	0.00			
TMEM169	92691	broad.mit.edu	37	2	216965258	216965258	+	Missense_Mutation	SNP	C	C	T	rs142015527	bycluster;by1000genomes	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	TMEM169	NM_001142310	exon4	c.C887T	p.T296M	CCTCCACGGTCTA		70	4	0.06	62	0	0		46		4	0	0.00			
EMILIN3	90187	mdanderson.org	37	20	39993681	39993681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_052846	exon2	c.C284A	p.T95K	GTGACTGTCCCGG		49	3	0.06	70	0	0				0	0				
DEPDC5	9681	broad.mit.edu	37	22	32302245	32302245	+	Missense_Mutation	SNP	G	G	A	rs370366925		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	DEPDC5_ENST00000535622,NS,carcinoma,0,1	DEPDC5	NM_001242896	exon43	c.G4574A	p.R1525Q	AGCAGCGGCGGCG		303	5	0.02	221	0	0		266	1	52	0	0.00			
KIF15	56992	mdanderson.org	37	3	44872428	44872428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_020242	exon26	c.G3089T	p.R1030I	AGAGCAGAGTGTT		48	3	0.06	48	0	0				34	0	0.00			
UMPS	7372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124456529	124456529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	UMPS	NM_000373	exon3	c.A425C	p.E142A	AGAAGGAGGGCTT		151	15	0.10	155	1	0.0064516129		43		135	33	0.24			
KCNMB3	27094	mdanderson.org	37	3	178962476	178962476	+	Missense_Mutation	SNP	T	T	C	rs4080958	byhapmap	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_014407	exon3	c.A266G	p.Q89R	TCTCTCTGAATGC		177	9	0.05	181	4	0.0220994475				4	0	0.00			
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	DSPP	NM_014208	exon5	c.C3456T	p.D1152D	CAGCGACAGCAGT		106	8	0.08	93	1	0.0107526882		174		0	0				
DPYSL3	1809	mdanderson.org	37	5	146777272	146777272	+	Missense_Mutation	SNP	G	G	T	rs373475070	alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001197294	exon12	c.C1760A	p.P587Q	GAGAACGGGCTGC		44	3	0.07	77	0	0				38	0	0.00			
CAMK2A	815	mdanderson.org	37	5	149607840	149607840	+	Nonsense_Mutation	SNP	G	G	T	rs375087065	alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_015981	exon17	c.C1152A	p.C384X	AGGGTCGCACATC		27	3	0.11	49	0	0				0	0				
PRRC2A	7916	mdanderson.org	37	6	31596000	31596000	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_004638	exon12	c.C1749T	p.S583S	TGGCAGCTTCGAA		46	3	0.07	32	0	0				291	1	0.00			
CUL9	23113	mdanderson.org	37	6	43156418	43156418	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	CUL9,colon,carcinoma,+2,1	CUL9	NM_015089	exon8	c.G2145T	p.R715R	TGAGCGGGACCAC		79	5	0.06	65	0	0		2	1	5	0	0.00			
RAET1L	154064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	150346542	150346542	+	Missense_Mutation	SNP	C	C	G	rs200401216	bycluster;by1000genomes	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_130900	exon1	c.G66C	p.W22C	CCGGGACCAGCCG		75	6	0.08	48	0	0	0.001			0	0				
HGC6.3	0	broad.mit.edu	37	6	168376821	168376821	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001129895	exon1	c.A512G	p.E171G	GGTCACTCCCCCT		206	7	0.03	249	2	0.0080321285				32	0	0.00			
PMS2	5395	broad.mit.edu	37	7	6026444	6026444	+	Missense_Mutation	SNP	T	T	C	rs267608167		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PMS2	NM_000535	exon11	c.A1952G	p.K651R	CAAATCTTTGCCC		520	4	0.01	371	1	0.0026954178		88		45	1	0.02			
NYAP1	222950	mdanderson.org	37	7	100086606	100086606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_173564	exon4	c.A1262G	p.E421G	GGGGGGAGCGGGA		20	5	0.25	21	1	0.0476190476				2	0	0.00			
CUX1	1523	mdanderson.org	37	7	101877521	101877521	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001202543	exon22	c.3655+1G>T	.	AGAAAGGTAAGTC		50	3	0.06	46	0	0				0	0				
NEFL	4747	broad.mit.edu	37	8	24814108	24814108	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	NEFL	.	.	.	.	AGGGGGAGGATGG		48	3	0.06	48	0	0		47		6	0	0.00			
FGFR1	2260	mdanderson.org	37	8	38273576	38273576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001174067	exon14	c.C1759A	p.P587T	ACAAGGGACCTGC		38	3	0.08	34	0	0				192	0	0.00			
PCMTD1	115294	bcgsc.ca	37	8	52733110	52733110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PCMTD1	NM_052937	exon6	c.G875A	p.G292D	TGATTACCCACAA		178	10	0.06	156	2	0.0128205128		73		51	0	0.00			
PCMTD1	115294	bcgsc.ca	37	8	52733144	52733144	+	Missense_Mutation	SNP	C	C	T	rs200246241		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PCMTD1	NM_052937	exon6	c.G841A	p.V281I	GTTTAACTCTCTT		169	11	0.07	146	4	0.0273972603		73		79	0	0.00			
PKHD1L1	93035	mdanderson.org	37	8	110374854	110374854	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_177531	exon1	c.G45A	p.L15L	TGGGCTGCTCCTG		83	4	0.05	110	0	0				0	0				
MROH5	389690	broad.mit.edu	37	8	142444238	142444238	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	.	.	.	.	GGGGGGTGGGGGG		27	7	0.26	16	1	0.0625				0	0				
AQP7	364	bcgsc.ca	37	9	33385740	33385740	+	Missense_Mutation	SNP	A	A	T	rs201773300		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	AQP7	NM_001170	exon7	c.T650A	p.L217H	ATGCCAAGGGACA		30	7	0.23	33	0	0		58		0	0				
TMEM8B	51754	broad.mit.edu;mdanderson.org	37	9	35846298	35846298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	TMEM8B	NM_001042590	exon8	c.G417T	p.R139S	CACCAGGGTTGCC		78	4	0.05	96	0	0		53		10	0	0.00			
FKBP15	23307	mdanderson.org	37	9	115955813	115955813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_015258	exon11	c.A1024G	p.T342A	ATTTGGTACGAAG		58	3	0.05	81	0	0				21	1	0.05			
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139360565	139360565	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	SEC16A	NM_014866	exon8	c.T4152C	p.N1384N	AGCCACATTGTGG		42	4	0.10	61	0	0		249		49	5	0.10			
RBM10	8241	broad.mit.edu	37	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG		59	3	0.05	68	1	0.0147058824		117		13	0	0.00			
FGD1	2245	broad.mit.edu	37	X	54496515	54496515	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	FGD1	NM_004463	exon4	c.G1035C	p.E345D	CTCCTCCTCGTCG		141	4	0.03	133	0	0		99		187	0	0.00			
ZFP92	139735	mdanderson.org	37	X	152686627	152686627	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001136273	exon4	c.C792T	p.Y264Y	GCCCTACGCGTGC		36	3	0.08	44	0	0				0	0