Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000215304	0	genome.wustl.edu	37	15	32716905	32716905	+	RNA	SNP	A	A	C			TCGA-RD-A8N2-01A-12D-A364-08	TCGA-RD-A8N2-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4f2fe156-deb5-4063-9912-0b909ccbe7be	5dcbd469-16fa-47d3-afe9-bfaa2dfbde7c	15	32716905	32716905	A	C	SNP	ENSG00000215304	ENST00000562108	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP13-395E19.3	Clone_based_vega_gene	ENSG00000215304	tier1	-	-	17	0	0.00	13	4	23.53
NCAPG	0	genome.wustl.edu	37	4	17836015	17836015	+	Frame_Shift_Del	DEL	A	A	-			TCGA-RD-A8N2-01A-12D-A364-08	TCGA-RD-A8N2-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4f2fe156-deb5-4063-9912-0b909ccbe7be	5dcbd469-16fa-47d3-afe9-bfaa2dfbde7c	4	17836015	17836015	A	-	DEL	NCAPG	ENST00000251496	human	ensembl	74_37	+1	known	frame_shift_del	c.1978	p.I662fs	0.236	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805	tier1			44	0	0.00	30	2	6.25
PADI1	0	genome.wustl.edu	37	1	17559358	17559358	+	Silent	SNP	T	T	A			TCGA-RD-A8N2-01A-12D-A364-08	TCGA-RD-A8N2-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4f2fe156-deb5-4063-9912-0b909ccbe7be	5dcbd469-16fa-47d3-afe9-bfaa2dfbde7c	1	17559358	17559358	T	A	SNP	PADI1	ENST00000375471	human	ensembl	74_37	+1	known	silent	c.1206	p.G402	0.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI1	HGNC	ENSG00000142623	tier1	-	-	27	0	0.00	19	5	20.83
PARP4	0	genome.wustl.edu	37	13	25044054	25044054	+	Missense_Mutation	SNP	T	T	C			TCGA-RD-A8N2-01A-12D-A364-08	TCGA-RD-A8N2-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4f2fe156-deb5-4063-9912-0b909ccbe7be	5dcbd469-16fa-47d3-afe9-bfaa2dfbde7c	13	25044054	25044054	T	C	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.2024	p.N675S	1.000	pfam_VIT,smart_VIT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				43	0	0.00	46	5	9.80
RAD54L2	0	genome.wustl.edu	37	3	51664755	51664756	+	Frame_Shift_Ins	INS	-	-	A			TCGA-RD-A8N2-01A-12D-A364-08	TCGA-RD-A8N2-10A-01D-A362-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4f2fe156-deb5-4063-9912-0b909ccbe7be	5dcbd469-16fa-47d3-afe9-bfaa2dfbde7c	3	51664755	51664756	-	A	INS	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	frame_shift_ins	c.633_634	p.L211fs	0.955:1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	tier1			31	0	0.00	21	2	8.70
SIGLEC14	0	genome.wustl.edu	37	19	52149165	52149165	+	Silent	SNP	G	G	A			TCGA-RD-A8N2-01A-12D-A364-08	TCGA-RD-A8N2-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4f2fe156-deb5-4063-9912-0b909ccbe7be	5dcbd469-16fa-47d3-afe9-bfaa2dfbde7c	19	52149165	52149165	G	A	SNP	SIGLEC14	ENST00000360844	human	ensembl	74_37	-1	known	silent	c.570	p.P190	0.000	pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC14	HGNC	ENSG00000254415	tier1	rs71358847	-	9	0	0.00	7	8	53.33
ZNF106	0	genome.wustl.edu	37	15	42713331	42713331	+	Splice_Site	SNP	C	C	T			TCGA-RD-A8N2-01A-12D-A364-08	TCGA-RD-A8N2-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4f2fe156-deb5-4063-9912-0b909ccbe7be	5dcbd469-16fa-47d3-afe9-bfaa2dfbde7c	15	42713331	42713331	C	T	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	splice_site	c.5377-1	e17-1	1.000	-	-	-	no_errors	ZNF106	HGNC	ENSG00000103994	tier1	-	-	105	0	0.00	86	5	5.49