Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF DENND2C 0 genome.wustl.edu 37 1 115167929 115167929 + Missense_Mutation SNP G G A TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 1 115167929 115167929 G A SNP DENND2C ENST00000393274 human ensembl 74_37 -1 known missense c.677 p.T226M 0.000 NULL pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom - no_errors DENND2C HGNC ENSG00000175984 tier1 rs143833683 - 110 0 0.00 94 5 5.05 ENSG00000236817 0 genome.wustl.edu 37 1 247729207 247729207 + RNA DEL T T - TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 1 247729207 247729207 T - DEL ENSG00000236817 ENST00000435333 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors RP11-978I15.10 Clone_based_vega_gene ENSG00000236817 tier1 17 0 0.00 8 5 38.46 ENSG00000266156 0 genome.wustl.edu 37 19 20988370 20988370 + RNA DEL T T - TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 19 20988370 20988370 T - DEL ENSG00000266156 ENST00000582722 human ensembl 74_37 +1 novel rna NULL NULL 0.001 - - - no_errors AC010329.1 Clone_based_ensembl_gene ENSG00000266156 tier1 21 0 0.00 14 3 17.65 FAM46C 0 genome.wustl.edu 37 1 118166396 118166396 + Missense_Mutation SNP C C A TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 1 118166396 118166396 C A SNP FAM46C ENST00000369448 human ensembl 74_37 +1 known missense c.906 p.S302R 1.000 pfam_DUF1693 pfam_DUF1693 - no_errors FAM46C HGNC ENSG00000183508 37 0 0.00 37 4 9.76 FHOD3 0 genome.wustl.edu 37 18 34261459 34261460 + Frame_Shift_Del DEL AG AG - TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 AG AG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 18 34261459 34261460 AG - DEL FHOD3 ENST00000257209 human ensembl 74_37 +1 known frame_shift_del c.1371_1372 p.R461fs 0.879:1.000 NULL pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin - no_errors FHOD3 HGNC ENSG00000134775 tier1 44 0 0.00 34 3 8.11 GFM1 0 genome.wustl.edu 37 3 158383242 158383242 + Silent SNP A A G TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 3 158383242 158383242 A G SNP GFM1 ENST00000486715 human ensembl 74_37 +1 known silent c.1497 p.L499 0.997 superfamily_EFG_III-V,tigrfam_Transl_elong_EFG/EF2 pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom - no_errors GFM1 HGNC ENSG00000168827 tier1 - - 56 0 0.00 27 4 12.90 GGT3P 0 genome.wustl.edu 37 22 18769203 18769203 + RNA SNP G G A TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 22 18769203 18769203 G A SNP GGT3P ENST00000412448 human ensembl 74_37 -1 known rna NULL NULL 0.149 - - - no_errors GGT3P HGNC ENSG00000197421 tier1 rs111245818 - 35 0 0.00 50 9 15.25 ITIH6 0 genome.wustl.edu 37 X 54783556 54783556 + Missense_Mutation SNP A A T TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 X 54783556 54783556 A T SNP ITIH6 ENST00000218436 human ensembl 74_37 -1 known missense c.2951 p.L984Q 0.001 NULL pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A - no_errors ITIH6 HGNC ENSG00000102313 tier1 - - 31 0 0.00 35 4 10.26 KIF3B 0 genome.wustl.edu 37 20 30898763 30898765 + In_Frame_Del DEL GAG GAG - TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 GAG GAG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 20 30898763 30898765 GAG - DEL KIF3B ENST00000375712 human ensembl 74_37 +1 known in_frame_del c.1183_1185 p.E398in_frame_del 1.000:1.000:0.991 NULL pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF3B HGNC ENSG00000101350 tier1 32 0 0.00 33 4 10.81 MYL7 0 genome.wustl.edu 37 7 44179392 44179392 + Frame_Shift_Del DEL C C - TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 7 44179392 44179392 C - DEL MYL7 ENST00000223364 human ensembl 74_37 -1 known frame_shift_del c.366 p.N123fs 0.998 smart_EF_hand_dom,pfscan_EF_hand_dom smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors MYL7 HGNC ENSG00000106631 tier1 15 0 0.00 16 2 11.11 POM121 0 genome.wustl.edu 37 7 72412551 72412551 + Silent SNP C C A TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 7 72412551 72412551 C A SNP POM121 ENST00000434423 human ensembl 74_37 +1 known silent c.2019 p.A673 0.002 NULL NULL - no_errors POM121 HGNC ENSG00000196313 tier1 - - 45 0 0.00 25 4 13.79 PRDM14 0 genome.wustl.edu 37 8 70967556 70967556 + Nonsense_Mutation SNP G G T TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 8 70967556 70967556 G T SNP PRDM14 ENST00000276594 human ensembl 74_37 -1 known nonsense c.1467 p.Y489* 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2 - no_errors PRDM14 HGNC ENSG00000147596 tier1 - - 53 0 0.00 71 6 7.79 PTPN14 0 genome.wustl.edu 37 1 214557049 214557051 + In_Frame_Del DEL CCT CCT - TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 CCT CCT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 1 214557049 214557051 CCT - DEL PTPN14 ENST00000366956 human ensembl 74_37 -1 known in_frame_del c.2149_2147 p.E716in_frame_del 0.182:0.503:0.995 pirsf_Tyr_Pase_non-rcpt_typ-14/21 pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam - no_errors PTPN14 HGNC ENSG00000152104 tier1 38 0 0.00 30 3 9.09 TBC1D29 0 genome.wustl.edu 37 17 28890301 28890301 + Missense_Mutation SNP G G A TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 17 28890301 28890301 G A SNP TBC1D29 ENST00000579181 human ensembl 74_37 +1 known missense c.311 p.S104N 0.904 NULL superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D29 HGNC ENSG00000266733 24 0 0.00 16 6 27.27 TP53I3 0 genome.wustl.edu 37 2 24300469 24300469 + Missense_Mutation SNP C C T TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 2 24300469 24300469 C T SNP TP53I3 ENST00000238721 human ensembl 74_37 -1 known missense c.979 p.V327I 1.000 smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3 pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3 - no_errors TP53I3 HGNC ENSG00000115129 46 0 0.00 36 4 10.00 TUBBP5 0 genome.wustl.edu 37 9 141070768 141070768 + RNA SNP C C T TCGA-RD-A8N0-01A-12D-A364-08 TCGA-RD-A8N0-10A-01D-A362-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4e6ed210-3865-483c-8c33-bf11bc28d348 07b09eee-369e-4194-89b5-2c9d35250960 9 141070768 141070768 C T SNP TUBBP5 ENST00000290377 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors TUBBP5 HGNC ENSG00000159247 tier1 rs4609262 - 20 0 0.00 14 4 22.22