Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SLC6A10P	0	genome.wustl.edu	37	16	32890613	32890613	+	RNA	SNP	G	G	A			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	16	32890613	32890613	G	A	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617				31	0	0	21	3	12.5
SLC6A10P	0	genome.wustl.edu	37	16	32890622	32890622	+	RNA	SNP	T	T	G			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	16	32890622	32890622	T	G	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617				34	0	0	22	3	12
MUC4	0	genome.wustl.edu	37	3	195505813	195505813	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	3	195505813	195505813	T	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12638	p.D4213G	0.061	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				15	0	0	15	3	16.6667
MUC4	0	genome.wustl.edu	37	3	195505814	195505814	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	3	195505814	195505814	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12637	p.D4213N	0.103	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				15	0	0	15	3	16.6667
LMOD2	0	genome.wustl.edu	37	7	123302918	123302918	+	Silent	SNP	T	T	C			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	7	123302918	123302918	T	C	SNP	LMOD2	ENST00000458573	human	ensembl	74_37	+1	known	silent	c.1278	p.P426	0.000	NULL	pfam_Tropomodulin,pfscan_WH2_dom	-	no_errors	LMOD2	HGNC	ENSG00000170807				21	0	0	18	3	14.2857
FAM83A	0	genome.wustl.edu	37	8	124195202	124195202	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	8	124195202	124195202	C	T	SNP	FAM83A	ENST00000318462	human	ensembl	74_37	+1	known	missense	c.106	p.R36W	0.988	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83A	HGNC	ENSG00000147689				51	0	0	39	3	7.14286
MT-ND5	0	genome.wustl.edu	37	MT	13249	13249	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	MT	13249	13249	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.913	p.S305P	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				72	0	0	38	4	9.52381
PASD1	0	genome.wustl.edu	37	X	150840969	150840969	+	Missense_Mutation	SNP	G	G	T			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	X	150840969	150840969	G	T	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.1752	p.Q584H	0.000	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				134	0	0	105	7	6.25
PAK1	0	genome.wustl.edu	37	11	77069990	77069992	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-HU-A4GJ-01A-11D-A25D-08	TCGA-HU-A4GJ-10A-01D-A25E-08	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b1a0dd0-c91c-44ed-8615-df3241a61ae7	9b73fc2d-58f6-48cb-b68d-96d6596cf47a	11	77069990	77069992	CAT	-	DEL	PAK1	ENST00000278568	human	ensembl	74_37	-1	known	in_frame_del	c.550_548	p.D183in_frame_del	0.896:0.906:0.926	superfamily_WASP_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK1	HGNC	ENSG00000149269				172	0	0	139	8	5.44218