Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF HSPG2 0 genome.wustl.edu 37 1 22199882 22199882 + Missense_Mutation SNP C C G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 1 22199882 22199882 C G SNP HSPG2 ENST00000374695 human ensembl 74_37 -1 known missense c.3779 p.G1260A 1.000 pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt - no_errors HSPG2 HGNC ENSG00000142798 303 1 0.328947 105 46 30.4636 OBSCN 0 genome.wustl.edu 37 1 228434292 228434292 + Missense_Mutation SNP C C G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 1 228434292 228434292 C G SNP OBSCN ENST00000422127 human ensembl 74_37 +1 known missense c.3821 p.A1274G 0.014 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain - no_errors OBSCN HGNC ENSG00000154358 189 0 0 55 30 35.2941 HMGN2 0 genome.wustl.edu 37 1 26801762 26801762 + RNA SNP G G T TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 1 26801762 26801762 G T SNP HMGN2 ENST00000460563 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors HMGN2 HGNC ENSG00000198830 19 0 0 6 6 50 MICAL2 0 genome.wustl.edu 37 11 12225829 12225829 + Missense_Mutation SNP G G T TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 11 12225829 12225829 G T SNP MICAL2 ENST00000256194 human ensembl 74_37 +1 known missense c.297 p.L99F 1.000 pfam_mOase_FAD-bd,pfam_FAD_bind_dom,prints_Rng_hydrolase-like pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like - no_errors MICAL2 HGNC ENSG00000133816 118 0 0 30 30 50 MICALCL 0 genome.wustl.edu 37 11 12315180 12315180 + Missense_Mutation SNP C C G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 11 12315180 12315180 C G SNP MICALCL ENST00000256186 human ensembl 74_37 +1 known missense c.202 p.R68G 0.003 NULL pfam_DUF3585,smart_ProQ/FinO - no_errors MICALCL HGNC ENSG00000133808 477 0 0 212 26 10.9244 KRT75 0 genome.wustl.edu 37 12 52822136 52822136 + Missense_Mutation SNP C C G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 12 52822136 52822136 C G SNP KRT75 ENST00000252245 human ensembl 74_37 -1 known missense c.1286 p.R429P 0.997 pfam_IF pfam_IF,superfamily_Prefoldin,prints_Keratin_II - no_errors KRT75 HGNC ENSG00000170454 156 0 0 18 26 59.0909 ATP8A2 0 genome.wustl.edu 37 13 26153950 26153950 + Missense_Mutation SNP G G T TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 13 26153950 26153950 G T SNP ATP8A2 ENST00000381655 human ensembl 74_37 +1 known missense c.1872 p.L624F 1.000 superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP8A2 HGNC ENSG00000132932 182 1 0.546448 42 46 52.2727 DMXL2 0 genome.wustl.edu 37 15 51766637 51766637 + Missense_Mutation SNP C C A TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 15 51766637 51766637 C A SNP DMXL2 ENST00000543779 human ensembl 74_37 -1 known missense c.7117 p.A2373S 1.000 NULL pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DMXL2 HGNC ENSG00000104093 130 1 0.763359 36 31 46.2687 SPATA20 0 genome.wustl.edu 37 17 48628510 48628510 + Missense_Mutation SNP C C A TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 17 48628510 48628510 C A SNP SPATA20 ENST00000006658 human ensembl 74_37 +1 known missense c.1535 p.P512H 1.000 superfamily_6-hairpin_glycosidase-like pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold - no_errors SPATA20 HGNC ENSG00000006282 58 0 0 14 7 33.3333 SPATA20 0 genome.wustl.edu 37 17 48628511 48628511 + Silent SNP C C A TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 17 48628511 48628511 C A SNP SPATA20 ENST00000006658 human ensembl 74_37 +1 known silent c.1536 p.P512 0.001 superfamily_6-hairpin_glycosidase-like pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold - no_errors SPATA20 HGNC ENSG00000006282 61 0 0 14 8 36.3636 NWD1 0 genome.wustl.edu 37 19 16860087 16860087 + Missense_Mutation SNP G G C TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 19 16860087 16860087 G C SNP NWD1 ENST00000379808 human ensembl 74_37 +1 known missense c.634 p.A212P 0.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors NWD1 HGNC ENSG00000188039 160 1 0.621118 57 18 24 JUND 0 genome.wustl.edu 37 19 18391902 18391902 + Silent SNP G G A TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 19 18391902 18391902 G A SNP JUND ENST00000252818 human ensembl 74_37 -1 known silent c.393 p.S131 0.997 pfam_JNK pfam_JNK,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun - no_errors JUND HGNC ENSG00000130522 33 0 0 12 3 20 NPHS1 0 genome.wustl.edu 37 19 36336437 36336437 + Missense_Mutation SNP T T C TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 19 36336437 36336437 T C SNP NPHS1 ENST00000378910 human ensembl 74_37 -1 known missense c.1763 p.E588G 0.908 pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors NPHS1 HGNC ENSG00000161270 33 0 0 8 12 60 CIC 0 genome.wustl.edu 37 19 42795827 42795827 + Missense_Mutation SNP G G C TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 19 42795827 42795827 G C SNP CIC ENST00000575354 human ensembl 74_37 +1 known missense c.2816 p.G939A 0.998 NULL pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom - no_errors CIC HGNC ENSG00000079432 191 1 0.520833 74 29 28.1553 ZSCAN18 0 genome.wustl.edu 37 19 58600105 58600105 + Missense_Mutation SNP C C G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 19 58600105 58600105 C G SNP ZSCAN18 ENST00000600404 human ensembl 74_37 -1 known missense c.671 p.S224T 0.023 NULL pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN - no_errors ZSCAN18 HGNC ENSG00000121413 109 1 0.909091 25 20 44.4444 TTC7A 0 genome.wustl.edu 37 2 47251469 47251469 + Missense_Mutation SNP G G C TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 2 47251469 47251469 G C SNP TTC7A ENST00000319190 human ensembl 74_37 +1 known missense c.1612 p.V538L 0.996 pfscan_TPR-contain_dom pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors TTC7A HGNC ENSG00000068724 55 0 0 32 4 11.1111 MCM8 0 genome.wustl.edu 37 20 5948171 5948171 + Missense_Mutation SNP G G A TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 20 5948171 5948171 G A SNP MCM8 ENST00000378886 human ensembl 74_37 +1 known missense c.965 p.S322N 1.000 superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase - no_errors MCM8 HGNC ENSG00000125885 186 0 0 58 36 38.2979 BRD8 0 genome.wustl.edu 37 5 137503737 137503737 + Missense_Mutation SNP C C A TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 5 137503737 137503737 C A SNP BRD8 ENST00000254900 human ensembl 74_37 -1 known missense c.673 p.G225C 1.000 NULL pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain - no_errors BRD8 HGNC ENSG00000112983 240 0 0 64 48 42.8571 BMPER 0 genome.wustl.edu 37 7 34118719 34118719 + Silent SNP G G C TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 7 34118719 34118719 G C SNP BMPER ENST00000297161 human ensembl 74_37 +1 known silent c.1329 p.S443 0.663 pfam_VWF_type-D,smart_VWF_type-D pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C - no_errors BMPER HGNC ENSG00000164619 202 1 0.492611 59 32 35.1648 WBSCR17 0 genome.wustl.edu 37 7 70800582 70800582 + Silent SNP T T G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 7 70800582 70800582 T G SNP WBSCR17 ENST00000333538 human ensembl 74_37 +1 known silent c.285 p.G95 0.999 NULL pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors WBSCR17 HGNC ENSG00000185274 104 0 0 41 19 31.6667 GLT6D1 0 genome.wustl.edu 37 9 138518015 138518015 + Missense_Mutation SNP C C G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 9 138518015 138518015 C G SNP GLT6D1 ENST00000371763 human ensembl 74_37 -1 known missense c.157 p.A53P 0.987 pfam_Glyco_trans_6 pfam_Glyco_trans_6 - no_errors GLT6D1 HGNC ENSG00000204007 196 1 0.507614 48 12 20 P2RY4 0 genome.wustl.edu 37 X 69478801 69478801 + Missense_Mutation SNP C C G TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff X 69478801 69478801 C G SNP P2RY4 ENST00000374519 human ensembl 74_37 -1 known missense c.674 p.R225P 0.999 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt - no_errors P2RY4 HGNC ENSG00000186912 50 0 0 13 10 43.4783 ARID1B 0 genome.wustl.edu 37 6 157100396 157100397 + In_Frame_Ins INS - - CGC TCGA-FP-8209-01A-11D-2340-08 TCGA-FP-8209-11A-01D-2340-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq b379db23-0a52-4758-8511-6ab09c95f18c 1b97b4d8-4c58-4014-8c82-7e933a3357ff 6 157100396 157100397 - CGC INS ARID1B ENST00000367148 human ensembl 74_37 +1 known in_frame_ins c.1333_1334 p.449in_frame_insP 1.000:1.000 NULL pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID1B HGNC ENSG00000049618 16 0 0 8 2 20