Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RGS16	0	genome.wustl.edu	37	1	182569616	182569616	+	Silent	SNP	C	C	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	1	182569616	182569616	C	T	SNP	RGS16	ENST00000367558	human	ensembl	74_37	-1	known	silent	c.420	p.T140	0.006	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS16	HGNC	ENSG00000143333				76	0	0	92	5	5.15464
SORCS1	0	genome.wustl.edu	37	10	108389086	108389086	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	10	108389086	108389086	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.2536	p.V846I	0.990	pfam_PKD_dom,superfamily_PKD_dom,pfscan_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				56	0	0	53	4	7.01754
CWF19L2	0	genome.wustl.edu	37	11	107288936	107288936	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	11	107288936	107288936	T	C	SNP	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	missense	c.1511	p.E504G	1.000	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404				92	0	0	81	5	5.81395
DCLK1	0	genome.wustl.edu	37	13	36396972	36396972	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	13	36396972	36396972	T	C	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.1448	p.Y483C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				108	0	0	105	13	11.0169
DIAPH3	0	genome.wustl.edu	37	13	60453471	60453471	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	13	60453471	60453471	G	T	SNP	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	missense	c.2499	p.S833R	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				55	0	0	93	9	8.82353
RRN3P2	0	genome.wustl.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	16	29110458	29110458	T	C	SNP	RRN3P2	ENST00000427965	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	RRN3P2	HGNC	ENSG00000103472				45	0	0	74	5	6.32911
CDK5R1	0	genome.wustl.edu	37	17	30815527	30815527	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	17	30815527	30815527	G	T	SNP	CDK5R1	ENST00000313401	human	ensembl	74_37	+1	known	missense	c.889	p.D297Y	1.000	pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R1	HGNC	ENSG00000176749				109	1	0.909091	74	4	5.12821
TUBG2	0	genome.wustl.edu	37	17	40817732	40817732	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	17	40817732	40817732	C	T	SNP	TUBG2	ENST00000251412	human	ensembl	74_37	+1	known	missense	c.730	p.R244C	1.000	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG2	HGNC	ENSG00000037042				114	0	0	119	7	5.55556
TPO	0	genome.wustl.edu	37	2	1488414	1488414	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	2	1488414	1488414	C	T	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.1385	p.A462V	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				48	0	0	45	4	8.16327
POM121L9P	0	genome.wustl.edu	37	22	24659593	24659593	+	RNA	SNP	C	C	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	22	24659593	24659593	C	T	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				37	0	0	31	3	8.82353
TRIOBP	0	genome.wustl.edu	37	22	38151603	38151603	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	22	38151603	38151603	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.5624	p.R1875Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				67	0	0	68	4	5.55556
ATG12	0	genome.wustl.edu	37	5	115177189	115177189	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	5	115177189	115177189	C	G	SNP	ATG12	ENST00000274459	human	ensembl	74_37	-1	known	missense	c.202	p.G68R	0.916	NULL	pfam_Atg12,pfam_Atg8_fam	-	no_errors	ATG12	HGNC	ENSG00000145782				123	0	0	111	8	6.72269
DNAH5	0	genome.wustl.edu	37	5	13793818	13793818	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	5	13793818	13793818	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.8030	p.R2677Q	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				97	0	0	101	7	6.48148
AIM1	0	genome.wustl.edu	37	6	106960219	106960219	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	6	106960219	106960219	G	T	SNP	AIM1	ENST00000369066	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297				22	0	0	33	3	8.33333
DOCK4	0	genome.wustl.edu	37	7	111381245	111381245	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	7	111381245	111381245	G	A	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	nonsense	c.4945	p.R1649*	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				266	0	0	230	14	5.7377
DLC1	0	genome.wustl.edu	37	8	12957206	12957206	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	8	12957206	12957206	G	C	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.2640	p.D880E	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				38	0	0	41	13	24.0741
NTNG2	0	genome.wustl.edu	37	9	135073844	135073844	+	Silent	SNP	G	G	A			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	9	135073844	135073844	G	A	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	silent	c.705	p.T235	0.993	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				113	0	0	100	11	9.90991
MAGEC2	0	genome.wustl.edu	37	X	141291626	141291626	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	X	141291626	141291626	A	T	SNP	MAGEC2	ENST00000247452	human	ensembl	74_37	-1	known	missense	c.148	p.F50I	0.001	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774				90	0	0	99	6	5.71429
SREBF2	0	genome.wustl.edu	37	22	42262949	42262951	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-CG-5716-01A-21D-1800-08	TCGA-CG-5716-10A-01D-1800-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bb5aa549-e6a0-4488-afab-baa6fd7a95f2	c5250011-60a8-4f17-b54c-86a0186eee67	22	42262949	42262951	GCA	-	DEL	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	in_frame_del	c.203_205	p.S72in_frame_del	0.037:0.043:0.048	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				106	0	0	98	7	6.66667