Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF COL11A1 0 genome.wustl.edu 37 1 103385904 103385904 + Missense_Mutation SNP G G T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 103385904 103385904 G T SNP COL11A1 ENST00000358392 human ensembl 74_37 -1 known missense c.3761 p.P1254Q 0.991 NULL pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C - no_errors COL11A1 HGNC ENSG00000060718 142 0 0 96 10 9.43396 DRAM2 0 genome.wustl.edu 37 1 111661418 111661418 + RNA SNP C C A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 111661418 111661418 C A SNP DRAM2 ENST00000477588 human ensembl 74_37 -1 known rna NULL NULL 0.057 - - - no_errors DRAM2 HGNC ENSG00000156171 26 0 0 13 2 13.3333 ATP8B2 0 genome.wustl.edu 37 1 154317185 154317185 + Missense_Mutation SNP T T G TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 154317185 154317185 T G SNP ATP8B2 ENST00000368489 human ensembl 74_37 +1 known missense c.2309 p.L770R 0.007 superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP8B2 HGNC ENSG00000143515 123 0 0 98 21 17.6471 RUSC1-AS1 0 genome.wustl.edu 37 1 155291183 155291183 + RNA SNP A A G TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 155291183 155291183 A G SNP RUSC1-AS1 ENST00000446880 human ensembl 74_37 -1 known rna NULL NULL 0.003 - - - no_errors RUSC1-AS1 HGNC ENSG00000225855 23 0 0 22 2 8.33333 XPR1 0 genome.wustl.edu 37 1 180794410 180794410 + Missense_Mutation SNP T T A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 180794410 180794410 T A SNP XPR1 ENST00000367590 human ensembl 74_37 +1 known missense c.1064 p.M355K 1.000 pfam_EXS_C pfam_EXS_C,pfam_SPX_N - no_errors XPR1 HGNC ENSG00000143324 135 0 0 103 12 10.4348 SLC26A9 0 genome.wustl.edu 37 1 205884254 205884254 + Silent SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 205884254 205884254 G A SNP SLC26A9 ENST00000340781 human ensembl 74_37 -1 known silent c.2430 p.S810 0.000 NULL pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt - no_errors SLC26A9 HGNC ENSG00000174502 59 0 0 76 5 6.17284 DLGAP3 0 genome.wustl.edu 37 1 35365313 35365313 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 35365313 35365313 C T SNP DLGAP3 ENST00000235180 human ensembl 74_37 -1 known missense c.1343 p.R448Q 1.000 NULL pfam_GKAP - no_errors DLGAP3 HGNC ENSG00000116544 132 0 0 117 18 13.3333 GLIS1 0 genome.wustl.edu 37 1 53980408 53980408 + Silent SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 53980408 53980408 G A SNP GLIS1 ENST00000312233 human ensembl 74_37 -1 known silent c.1248 p.G416 0.017 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLIS1 HGNC ENSG00000174332 64 0 0 59 5 7.8125 LRRC7 0 genome.wustl.edu 37 1 70509665 70509665 + Missense_Mutation SNP A A G TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 1 70509665 70509665 A G SNP LRRC7 ENST00000035383 human ensembl 74_37 +1 known missense c.3884 p.N1295S 1.000 NULL pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ - no_errors LRRC7 HGNC ENSG00000033122 67 0 0 52 7 11.8644 FAM196A 0 genome.wustl.edu 37 10 128974037 128974037 + Missense_Mutation SNP G G T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 10 128974037 128974037 G T SNP FAM196A ENST00000522781 human ensembl 74_37 -1 known missense c.623 p.A208E 0.002 NULL NULL - no_errors FAM196A HGNC ENSG00000188916 56 0 0 66 6 8.33333 HSD17B7P2 0 genome.wustl.edu 37 10 38654432 38654432 + RNA SNP A A G TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 10 38654432 38654432 A G SNP HSD17B7P2 ENST00000494540 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors HSD17B7P2 HGNC ENSG00000099251 45 0 0 51 3 5.55556 FBXO18 0 genome.wustl.edu 37 10 5978466 5978466 + Silent SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 10 5978466 5978466 C T SNP FBXO18 ENST00000379999 human ensembl 74_37 +1 known silent c.3030 p.G1010 0.920 NULL pfam_UvrD-like_ATP-bd,pfam_F-box_dom,superfamily_P-loop_NTPase,superfamily_F-box_dom,pfscan_F-box_dom - no_errors FBXO18 HGNC ENSG00000134452 77 0 0 69 4 5.47945 ATM 0 genome.wustl.edu 37 11 108235869 108235869 + Nonsense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 11 108235869 108235869 C T SNP ATM ENST00000278616 human ensembl 74_37 +1 known nonsense c.8911 p.Q2971* 1.000 superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom - no_errors ATM HGNC ENSG00000149311 59 0 0 50 9 15.2542 C11orf57 0 genome.wustl.edu 37 11 111951135 111951135 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 11 111951135 111951135 G A SNP C11orf57 ENST00000393047 human ensembl 74_37 +1 known missense c.173 p.R58Q 1.000 NULL NULL - no_errors C11orf57 HGNC ENSG00000150776 71 0 0 68 6 8.10811 CADM1 0 genome.wustl.edu 37 11 115049385 115049385 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 11 115049385 115049385 G A SNP CADM1 ENST00000452722 human ensembl 74_37 -1 known missense c.1189 p.R397C 1.000 smart_Neurexin-like pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom - no_errors CADM1 HGNC ENSG00000182985 180 1 0.552486 176 14 7.36842 USP2 0 genome.wustl.edu 37 11 119243689 119243689 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 11 119243689 119243689 G A SNP USP2 ENST00000260187 human ensembl 74_37 -1 known missense c.502 p.R168C 1.000 NULL pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 - no_errors USP2 HGNC ENSG00000036672 107 0 0 111 8 6.72269 OR5AR1 0 genome.wustl.edu 37 11 56431602 56431602 + Silent SNP C C A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 11 56431602 56431602 C A SNP OR5AR1 ENST00000302969 human ensembl 74_37 +1 known silent c.441 p.G147 0.560 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR5AR1 HGNC ENSG00000172459 148 0 0 134 11 7.58621 HECTD4 0 genome.wustl.edu 37 12 112605326 112605326 + Missense_Mutation SNP G G T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 12 112605326 112605326 G T SNP HECTD4 ENST00000377560 human ensembl 74_37 -1 known missense c.11813 p.T3938N 1.000 pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT - no_errors HECTD4 HGNC ENSG00000173064 24 0 0 18 3 14.2857 NOS1 0 genome.wustl.edu 37 12 117672461 117672461 + Silent SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 12 117672461 117672461 G A SNP NOS1 ENST00000317775 human ensembl 74_37 -1 known silent c.3144 p.L1048 0.709 pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin - no_errors NOS1 HGNC ENSG00000089250 61 0 0 43 15 25.8621 MSI1 0 genome.wustl.edu 37 12 120784004 120784004 + Silent SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 12 120784004 120784004 C T SNP MSI1 ENST00000257552 human ensembl 74_37 -1 known silent c.981 p.S327 0.680 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors MSI1 HGNC ENSG00000135097 11 0 0 5 10 66.6667 HNRNPA1 0 genome.wustl.edu 37 12 54677679 54677679 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 12 54677679 54677679 G A SNP HNRNPA1 ENST00000340913 human ensembl 74_37 +1 known missense c.991 p.G331R 1.000 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors HNRNPA1 HGNC ENSG00000135486 124 0 0 133 11 7.63889 PLXNC1 0 genome.wustl.edu 37 12 94673283 94673283 + Silent SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 12 94673283 94673283 C T SNP PLXNC1 ENST00000258526 human ensembl 74_37 +1 known silent c.3633 p.N1211 0.885 pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom - no_errors PLXNC1 HGNC ENSG00000136040 65 0 0 47 8 14.5455 ATP12A 0 genome.wustl.edu 37 13 25275019 25275019 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 13 25275019 25275019 G A SNP ATP12A ENST00000218548 human ensembl 74_37 +1 known missense c.1858 p.V620M 1.000 pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP12A HGNC ENSG00000075673 92 0 0 69 7 9.21053 EEF1DP3 0 genome.wustl.edu 37 13 32527529 32527529 + RNA SNP A A G TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 13 32527529 32527529 A G SNP EEF1DP3 ENST00000428783 human ensembl 74_37 +1 known rna NULL NULL 0.009 - - - no_errors EEF1DP3 HGNC ENSG00000229715 28 0 0 42 3 6.66667 MYO9A 0 genome.wustl.edu 37 15 72227788 72227788 + Missense_Mutation SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 15 72227788 72227788 T C SNP MYO9A ENST00000424560 human ensembl 74_37 -1 known missense c.2416 p.I806V 0.992 superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom - no_errors MYO9A HGNC ENSG00000066933 71 0 0 59 4 6.34921 CREBBP 0 genome.wustl.edu 37 16 3778427 3778427 + Silent SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 16 3778427 3778427 T C SNP CREBBP ENST00000262367 human ensembl 74_37 -1 known silent c.6621 p.Q2207 0.992 NULL pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain - no_errors CREBBP HGNC ENSG00000005339 30 0 0 32 3 8.57143 PNMT 0 genome.wustl.edu 37 17 37826401 37826401 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 17 37826401 37826401 C T SNP PNMT ENST00000269582 human ensembl 74_37 +1 known missense c.608 p.T203M 0.723 pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans - no_errors PNMT HGNC ENSG00000141744 32 0 0 33 23 41.0714 ZNF652 0 genome.wustl.edu 37 17 47394442 47394442 + Missense_Mutation SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 17 47394442 47394442 T C SNP ZNF652 ENST00000362063 human ensembl 74_37 -1 known missense c.646 p.S216G 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF652 HGNC ENSG00000198740 56 0 0 51 3 5.55556 KCNH6 0 genome.wustl.edu 37 17 61613406 61613406 + Missense_Mutation SNP C C A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 17 61613406 61613406 C A SNP KCNH6 ENST00000583023 human ensembl 74_37 +1 known missense c.1478 p.S493Y 1.000 pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_2pore_dom_K_chnl pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom - no_errors KCNH6 HGNC ENSG00000173826 88 0 0 82 5 5.74713 SCN4A 0 genome.wustl.edu 37 17 62018184 62018184 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 17 62018184 62018184 C T SNP SCN4A ENST00000435607 human ensembl 74_37 -1 known missense c.5458 p.A1820T 0.000 NULL pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2 - no_errors SCN4A HGNC ENSG00000007314 68 0 0 57 5 8.06452 TSPAN10 0 genome.wustl.edu 37 17 79609404 79609404 + RNA SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 17 79609404 79609404 G A SNP TSPAN10 ENST00000540189 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors TSPAN10 HGNC ENSG00000182612 93 0 0 69 11 13.75 SLC25A10 0 genome.wustl.edu 37 17 79686876 79686876 + Missense_Mutation SNP G G T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 17 79686876 79686876 G T SNP SLC25A10 ENST00000541223 human ensembl 74_37 +1 known missense c.1186 p.A396S 0.024 pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier pfam_Mitochondrial_sb/sol_carrier,pfam_Ribosomal_L7/L12_C,superfamily_Mt_carrier_dom,superfamily_Ribosomal_L7/L12_oligo,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling - no_errors SLC25A10 HGNC ENSG00000183048 353 0 0 271 28 9.36455 ANKRD30B 0 genome.wustl.edu 37 18 14752957 14752957 + Silent SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 18 14752957 14752957 G A SNP ANKRD30B ENST00000358984 human ensembl 74_37 +1 known silent c.456 p.L152 0.000 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD30B HGNC ENSG00000180777 13 0 0 6 15 71.4286 CXXC1 0 genome.wustl.edu 37 18 47812529 47812529 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 18 47812529 47812529 C T SNP CXXC1 ENST00000412036 human ensembl 74_37 -1 known missense c.322 p.G108R 1.000 NULL pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC - no_errors CXXC1 HGNC ENSG00000154832 151 0 0 129 10 7.19424 CDH7 0 genome.wustl.edu 37 18 63548075 63548075 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 18 63548075 63548075 G A SNP CDH7 ENST00000323011 human ensembl 74_37 +1 known missense c.2303 p.R768H 0.998 pfam_Cadherin_cytoplasmic-dom pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH7 HGNC ENSG00000081138 100 0 0 68 5 6.84932 ZNF480 0 genome.wustl.edu 37 19 52817462 52817462 + Silent SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 19 52817462 52817462 C T SNP ZNF480 ENST00000468240 human ensembl 74_37 +1 known silent c.129 p.C43 0.293 pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF480 HGNC ENSG00000198464 137 0 0 130 11 7.80142 MAP2K7 0 genome.wustl.edu 37 19 7975916 7975916 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 19 7975916 7975916 G A SNP MAP2K7 ENST00000545011 human ensembl 74_37 +1 known missense c.853 p.D285N 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors MAP2K7 HGNC ENSG00000076984 59 0 0 46 7 13.2075 SCN9A 0 genome.wustl.edu 37 2 167141099 167141099 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 2 167141099 167141099 G A SNP SCN9A ENST00000303354 human ensembl 74_37 -1 known missense c.1841 p.P614L 1.000 pfam_DUF3451 pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2 - no_errors SCN9A HGNC ENSG00000169432 79 0 0 64 6 8.57143 TTN 0 genome.wustl.edu 37 2 179646964 179646964 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 2 179646964 179646964 C T SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.3355 p.G1119S 1.000 pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 67 0 0 59 4 6.34921 KCNS3 0 genome.wustl.edu 37 2 18112991 18112991 + Missense_Mutation SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 2 18112991 18112991 T C SNP KCNS3 ENST00000304101 human ensembl 74_37 +1 known missense c.716 p.V239A 0.998 pfam_Ion_trans_dom,prints_K_chnl pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2 - no_errors KCNS3 HGNC ENSG00000170745 115 0 0 128 14 9.85915 PLCL1 0 genome.wustl.edu 37 2 198949991 198949991 + Missense_Mutation SNP G G C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 2 198949991 198949991 G C SNP PLCL1 ENST00000428675 human ensembl 74_37 +1 known missense c.1750 p.E584Q 1.000 pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C - no_errors PLCL1 HGNC ENSG00000115896 88 0 0 75 5 6.25 COL6A3 0 genome.wustl.edu 37 2 238268749 238268749 + Silent SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 2 238268749 238268749 C T SNP COL6A3 ENST00000295550 human ensembl 74_37 -1 known silent c.6264 p.P2088 0.002 pfam_Collagen pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m - no_errors COL6A3 HGNC ENSG00000163359 42 0 0 34 6 15 PARD6B 0 genome.wustl.edu 37 20 49354417 49354417 + Silent SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 20 49354417 49354417 T C SNP PARD6B ENST00000371610 human ensembl 74_37 +1 known silent c.90 p.F30 1.000 pfam_OPR_PB1,smart_OPR_PB1 pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ - no_errors PARD6B HGNC ENSG00000124171 63 0 0 58 4 6.45161 FAM209A 0 genome.wustl.edu 37 20 55100887 55100887 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 20 55100887 55100887 G A SNP FAM209A ENST00000371328 human ensembl 74_37 +1 known missense c.277 p.G93S 0.004 NULL NULL - no_errors FAM209A HGNC ENSG00000124103 175 0 0 172 10 5.49451 BAGE2 0 genome.wustl.edu 37 21 11098760 11098760 + RNA SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 21 11098760 11098760 T C SNP BAGE2 ENST00000470054 human ensembl 74_37 -1 known rna NULL NULL 0.015 - - - no_errors BAGE2 HGNC ENSG00000187172 188 0 0 157 13 7.64706 KRTAP10-2 0 genome.wustl.edu 37 21 45971079 45971079 + Missense_Mutation SNP G G T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 21 45971079 45971079 G T SNP KRTAP10-2 ENST00000391621 human ensembl 74_37 -1 known missense c.263 p.A88D 0.023 NULL NULL - no_errors KRTAP10-2 HGNC ENSG00000205445 136 0 0 124 9 6.76692 KRTAP10-2 0 genome.wustl.edu 37 21 45971206 45971206 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 21 45971206 45971206 C T SNP KRTAP10-2 ENST00000391621 human ensembl 74_37 -1 known missense c.136 p.V46I 0.015 NULL NULL - no_errors KRTAP10-2 HGNC ENSG00000205445 78 0 0 75 9 10.7143 DIP2A 0 genome.wustl.edu 37 21 47976977 47976977 + Silent SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 21 47976977 47976977 G A SNP DIP2A ENST00000318711 human ensembl 74_37 +1 known silent c.3627 p.L1209 0.885 pfam_AMP-dep_Synth/Lig pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd - no_errors DIP2A HGNC ENSG00000160305 16 0 0 14 2 12.5 FANCD2 0 genome.wustl.edu 37 3 10078003 10078003 + Missense_Mutation SNP G G T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 3 10078003 10078003 G T SNP FANCD2 ENST00000287647 human ensembl 74_37 +1 known missense c.471 p.L157F 1.000 NULL superfamily_ARM-type_fold - no_errors FANCD2 HGNC ENSG00000144554 49 0 0 41 3 6.81818 ARHGAP31 0 genome.wustl.edu 37 3 119135065 119135065 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 3 119135065 119135065 G A SNP ARHGAP31 ENST00000264245 human ensembl 74_37 +1 known missense c.4289 p.R1430Q 1.000 NULL pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom - no_errors ARHGAP31 HGNC ENSG00000031081 50 0 0 45 3 6.25 NRROS 0 genome.wustl.edu 37 3 196386798 196386798 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 3 196386798 196386798 G A SNP NRROS ENST00000328557 human ensembl 74_37 +1 known missense c.284 p.R95H 0.000 smart_Leu-rich_rpt_typical-subtyp pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors NRROS HGNC ENSG00000174004 49 0 0 55 3 5.17241 DLEC1 0 genome.wustl.edu 37 3 38139256 38139256 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 3 38139256 38139256 G A SNP DLEC1 ENST00000346219 human ensembl 74_37 +1 known missense c.2587 p.V863I 0.006 NULL superfamily_PapD-like - no_errors DLEC1 HGNC ENSG00000008226 66 0 0 64 6 8.57143 CCDC110 0 genome.wustl.edu 37 4 186380606 186380606 + Missense_Mutation SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 4 186380606 186380606 T C SNP CCDC110 ENST00000307588 human ensembl 74_37 -1 known missense c.1135 p.R379G 0.530 NULL superfamily_4_helix_cytokine-like_core - no_errors CCDC110 HGNC ENSG00000168491 149 0 0 137 8 5.51724 MIER3 0 genome.wustl.edu 37 5 56231537 56231537 + Missense_Mutation SNP C C A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 5 56231537 56231537 C A SNP MIER3 ENST00000381199 human ensembl 74_37 -1 known missense c.478 p.D160Y 1.000 NULL pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom - no_errors MIER3 HGNC ENSG00000155545 60 0 0 61 4 6.15385 REV3L 0 genome.wustl.edu 37 6 111702600 111702600 + Missense_Mutation SNP T T C TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 6 111702600 111702600 T C SNP REV3L ENST00000358835 human ensembl 74_37 -1 known missense c.1144 p.I382V 1.000 superfamily_RNaseH-like_dom pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B - no_errors REV3L HGNC ENSG00000009413 42 0 0 43 3 6.52174 SYNE1 0 genome.wustl.edu 37 6 152542605 152542605 + Silent SNP G G T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 6 152542605 152542605 G T SNP SYNE1 ENST00000265368 human ensembl 74_37 -1 known silent c.21612 p.P7204 0.979 pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE1 HGNC ENSG00000131018 107 0 0 96 8 7.69231 TAGAP 0 genome.wustl.edu 37 6 159456921 159456921 + Nonsense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 6 159456921 159456921 G A SNP TAGAP ENST00000367066 human ensembl 74_37 -1 known nonsense c.2134 p.R712* 0.000 NULL pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom - no_errors TAGAP HGNC ENSG00000164691 67 0 0 56 6 9.67742 CYP21A2 0 genome.wustl.edu 37 6 32006337 32006337 + Silent SNP C C A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 6 32006337 32006337 C A SNP CYP21A2 ENST00000418967 human ensembl 74_37 +1 known silent c.138 p.P46 0.067 superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B - no_errors CYP21A2 HGNC ENSG00000231852 14 0 0 6 8 57.1429 DNAH8 0 genome.wustl.edu 37 6 38905788 38905788 + Nonsense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 6 38905788 38905788 C T SNP DNAH8 ENST00000359357 human ensembl 74_37 +1 known nonsense c.10951 p.R3651* 0.018 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DNAH8 HGNC ENSG00000124721 65 0 0 71 8 10.1266 BACH2 0 genome.wustl.edu 37 6 90718472 90718472 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 6 90718472 90718472 C T SNP BACH2 ENST00000257749 human ensembl 74_37 -1 known missense c.92 p.R31Q 1.000 pfam_BTB_POZ,superfamily_BTB/POZ_fold pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP - no_errors BACH2 HGNC ENSG00000112182 101 0 0 87 7 7.44681 NPSR1 0 genome.wustl.edu 37 7 34867067 34867067 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 7 34867067 34867067 C T SNP NPSR1 ENST00000381539 human ensembl 74_37 +1 known missense c.533 p.S178F 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt - no_errors NPSR1 HGNC ENSG00000187258 79 0 0 76 5 6.17284 STEAP4 0 genome.wustl.edu 37 7 87913437 87913437 + Nonsense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 7 87913437 87913437 G A SNP STEAP4 ENST00000380079 human ensembl 74_37 -1 known nonsense c.148 p.R50* 1.000 NULL pfam_Fe3_Rdtase_TM_dom - no_errors STEAP4 HGNC ENSG00000127954 81 0 0 104 8 7.14286 ZNF804B 0 genome.wustl.edu 37 7 88963039 88963039 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 7 88963039 88963039 G A SNP ZNF804B ENST00000333190 human ensembl 74_37 +1 known missense c.743 p.C248Y 0.998 NULL pfam_Znf_C2H2_jaz - no_errors ZNF804B HGNC ENSG00000182348 45 0 0 42 5 10.6383 TBC1D31 0 genome.wustl.edu 37 8 124096483 124096483 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 124096483 124096483 C T SNP TBC1D31 ENST00000287380 human ensembl 74_37 +1 known missense c.422 p.A141V 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom - no_errors TBC1D31 HGNC ENSG00000156787 128 0 0 119 21 15 PLEC 0 genome.wustl.edu 37 8 144993544 144993544 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 144993544 144993544 C T SNP PLEC ENST00000322810 human ensembl 74_37 -1 known missense c.10856 p.R3619H 0.999 pfam_Plectin_repeat,smart_Plectin_repeat pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain - no_errors PLEC HGNC ENSG00000178209 102 0 0 86 12 12.2449 PLEC 0 genome.wustl.edu 37 8 145016602 145016602 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 145016602 145016602 G A SNP PLEC ENST00000357649 human ensembl 74_37 -1 known missense c.82 p.P28S 0.487 superfamily_CH-domain pfam_Plectin_repeat,pfam_CH-domain,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain - no_errors PLEC HGNC ENSG00000178209 27 0 0 23 2 8 SLC7A2 0 genome.wustl.edu 37 8 17415834 17415834 + Missense_Mutation SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 17415834 17415834 C T SNP SLC7A2 ENST00000004531 human ensembl 74_37 +1 known missense c.1346 p.A449V 0.996 pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease - no_errors SLC7A2 HGNC ENSG00000003989 81 0 0 88 5 5.37634 SNAI2 0 genome.wustl.edu 37 8 49832989 49832989 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 49832989 49832989 G A SNP SNAI2 ENST00000020945 human ensembl 74_37 -1 known missense c.91 p.P31S 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SNAI2 HGNC ENSG00000019549 127 0 0 97 15 13.3929 KCNB2 0 genome.wustl.edu 37 8 73850023 73850023 + Silent SNP C C T TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 73850023 73850023 C T SNP KCNB2 ENST00000523207 human ensembl 74_37 +1 known silent c.2433 p.D811 0.996 NULL pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8 - no_errors KCNB2 HGNC ENSG00000182674 57 0 0 54 7 11.4754 KIAA1429 0 genome.wustl.edu 37 8 95500939 95500939 + Nonsense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 95500939 95500939 G A SNP KIAA1429 ENST00000297591 human ensembl 74_37 -1 known nonsense c.5434 p.R1812* 0.998 NULL superfamily_ARM-type_fold - no_errors KIAA1429 HGNC ENSG00000164944 184 0 0 187 20 9.66184 GDF6 0 genome.wustl.edu 37 8 97172648 97172648 + Silent SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 8 97172648 97172648 G A SNP GDF6 ENST00000287020 human ensembl 74_37 -1 known silent c.273 p.R91 1.000 pfam_TGF-b_N pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C - no_errors GDF6 HGNC ENSG00000156466 142 0 0 92 13 12.381 COL15A1 0 genome.wustl.edu 37 9 101749597 101749597 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 9 101749597 101749597 G A SNP COL15A1 ENST00000375001 human ensembl 74_37 +1 known missense c.670 p.V224M 0.048 superfamily_ConA-like_lec_gl_sf,smart_Laminin_G pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G - no_errors COL15A1 HGNC ENSG00000204291 258 0 0 202 19 8.59729 NOTCH1 0 genome.wustl.edu 37 9 139391716 139391716 + Missense_Mutation SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 9 139391716 139391716 G A SNP NOTCH1 ENST00000277541 human ensembl 74_37 -1 known missense c.6475 p.R2159C 1.000 pirsf_Notch pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom - no_errors NOTCH1 HGNC ENSG00000148400 58 0 0 38 5 11.6279 PTPRD 0 genome.wustl.edu 37 9 8521482 8521482 + Silent SNP G G A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 9 8521482 8521482 G A SNP PTPRD ENST00000356435 human ensembl 74_37 -1 known silent c.756 p.S252 0.997 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRD HGNC ENSG00000153707 105 0 0 86 13 13.1313 PASD1 0 genome.wustl.edu 37 X 150773161 150773161 + Missense_Mutation SNP T T G TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 X 150773161 150773161 T G SNP PASD1 ENST00000370357 human ensembl 74_37 +1 known missense c.72 p.I24M 0.000 NULL superfamily_PAS,smart_PAS,pfscan_PAS - no_errors PASD1 HGNC ENSG00000166049 17 0 0 14 3 17.6471 PCDH11Y 0 genome.wustl.edu 37 Y 4925448 4925448 + Missense_Mutation SNP C C A TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 Y 4925448 4925448 C A SNP PCDH11Y ENST00000215473 human ensembl 74_37 +1 known missense c.584 p.A195D 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH11Y HGNC ENSG00000099715 49 0 0 39 13 25 PLEKHA5 0 genome.wustl.edu 37 12 19460408 19460408 + RNA DEL A A - TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 12 19460408 19460408 A - DEL PLEKHA5 ENST00000510738 human ensembl 74_37 +1 known rna NULL NULL 0.931 - - - no_errors PLEKHA5 HGNC ENSG00000052126 25 0 0 18 2 10 DLGAP1-AS1 0 genome.wustl.edu 37 18 3597090 3597090 + RNA DEL T T - TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 18 3597090 3597090 T - DEL DLGAP1-AS1 ENST00000317114 human ensembl 74_37 +1 known rna NULL NULL 0.002 - - - no_errors DLGAP1-AS1 HGNC ENSG00000177337 38 0 0 34 5 12.8205 PLSCR1 0 genome.wustl.edu 37 3 146234963 146234963 + RNA DEL A A - TCGA-BR-A4J7-01A-31D-A25D-08 TCGA-BR-A4J7-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq e358b764-e5be-4a59-b170-7b2fbac78c87 ccdd1844-901d-4cc3-bf77-b9552021fcd0 3 146234963 146234963 A - DEL PLSCR1 ENST00000484560 human ensembl 74_37 -1 putative rna NULL NULL 0.163 - - - no_errors PLSCR1 HGNC ENSG00000188313 34 0 0 32 4 11.1111