Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF PAPPA2 0 genome.wustl.edu 37 1 176659380 176659380 + Missense_Mutation SNP A A G TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 1 176659380 176659380 A G SNP PAPPA2 ENST00000367662 human ensembl 74_37 +1 known missense c.2245 p.S749G 1.000 pfam_Peptidase_M43 pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt - no_errors PAPPA2 HGNC ENSG00000116183 165 0 0 120 52 30.2326 UBR4 0 genome.wustl.edu 37 1 19513771 19513771 + Missense_Mutation SNP C C A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 1 19513771 19513771 C A SNP UBR4 ENST00000375267 human ensembl 74_37 -1 known missense c.1519 p.A507S 1.000 NULL superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin - no_errors UBR4 HGNC ENSG00000127481 60 0 0 56 22 28.2051 SH2D5 0 genome.wustl.edu 37 1 21048371 21048371 + Missense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 1 21048371 21048371 C T SNP SH2D5 ENST00000444387 human ensembl 74_37 -1 known missense c.1186 p.D396N 1.000 NULL pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH2 - no_errors SH2D5 HGNC ENSG00000189410 38 0 0 27 15 35.7143 OXCT2 0 genome.wustl.edu 37 1 40235448 40235448 + Missense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 1 40235448 40235448 C T SNP OXCT2 ENST00000327582 human ensembl 74_37 -1 known missense c.1480 p.D494N 0.171 pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A - no_errors OXCT2 HGNC ENSG00000198754 43 0 0 41 5 10.8696 CAMTA1 0 genome.wustl.edu 37 1 7812581 7812581 + Missense_Mutation SNP G G A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 1 7812581 7812581 G A SNP CAMTA1 ENST00000303635 human ensembl 74_37 +1 known missense c.4946 p.R1649H 1.000 NULL pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS - no_errors CAMTA1 HGNC ENSG00000171735 32 0 0 33 2 5.71429 ENSG00000233547 0 genome.wustl.edu 37 10 114710732 114710732 + RNA SNP G G T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 10 114710732 114710732 G T SNP ENSG00000233547 ENST00000369391 human ensembl 74_37 -1 known rna NULL NULL 0.001 - - - no_errors RP11-57H14.2 Clone_based_vega_gene ENSG00000233547 13 0 0 20 6 23.0769 VPS11 0 genome.wustl.edu 37 11 118944008 118944008 + Missense_Mutation SNP G G T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 11 118944008 118944008 G T SNP VPS11 ENST00000300793 human ensembl 74_37 +1 known missense c.982 p.D328Y 1.000 superfamily_WD40_repeat_dom,pirsf_VPS11 pfam_VPS11_C,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_RING,pirsf_VPS11,pfscan_Znf_RING - no_errors VPS11 HGNC ENSG00000160695 34 0 0 28 14 33.3333 NELL1 0 genome.wustl.edu 37 11 21596581 21596581 + RNA SNP G G T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 11 21596581 21596581 G T SNP NELL1 ENST00000529218 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors NELL1 HGNC ENSG00000165973 46 0 0 30 3 9.09091 KLRAP1 0 genome.wustl.edu 37 12 10748442 10748442 + RNA SNP T T C TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 12 10748442 10748442 T C SNP KLRAP1 ENST00000535939 human ensembl 74_37 -1 known rna NULL NULL 0.019 - - - no_errors KLRAP1 HGNC ENSG00000256667 30 0 0 37 10 21.2766 PTPN11 0 genome.wustl.edu 37 12 112892407 112892407 + Missense_Mutation SNP T T G TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 12 112892407 112892407 T G SNP PTPN11 ENST00000351677 human ensembl 74_37 +1 known missense c.565 p.S189A 1.000 pfam_SH2,smart_SH2,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,prints_SH2 pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2 - no_errors PTPN11 HGNC ENSG00000179295 46 0 0 52 4 7.14286 OAS1 0 genome.wustl.edu 37 12 113355547 113355547 + Silent SNP T T A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 12 113355547 113355547 T A SNP OAS1 ENST00000452357 human ensembl 74_37 +1 known silent c.1080 p.P360 0.000 NULL pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N - no_errors OAS1 HGNC ENSG00000089127 89 0 0 45 26 36.6197 DDX11 0 genome.wustl.edu 37 12 31237978 31237978 + Missense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 12 31237978 31237978 C T SNP DDX11 ENST00000407793 human ensembl 74_37 +1 known missense c.556 p.R186W 0.002 superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3 pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3 - no_errors DDX11 HGNC ENSG00000013573 16 0 0 25 4 13.7931 ARID2 0 genome.wustl.edu 37 12 46245720 46245720 + Nonsense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 12 46245720 46245720 C T SNP ARID2 ENST00000334344 human ensembl 74_37 +1 known nonsense c.3814 p.R1272* 1.000 NULL pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID2 HGNC ENSG00000189079 51 0 0 20 21 51.2195 XRCC3 0 genome.wustl.edu 37 14 104165276 104165276 + Silent SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 14 104165276 104165276 C T SNP XRCC3 ENST00000352127 human ensembl 74_37 -1 known silent c.900 p.R300 0.004 pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pirsf_DNA_recomb/repair_RecA-like pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd - no_errors XRCC3 HGNC ENSG00000126215 10 0 0 8 6 42.8571 TEP1 0 genome.wustl.edu 37 14 20849537 20849537 + Missense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 14 20849537 20849537 C T SNP TEP1 ENST00000262715 human ensembl 74_37 -1 known missense c.4582 p.A1528T 1.000 NULL pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TEP1 HGNC ENSG00000129566 188 0 0 132 54 29.0323 ZNF592 0 genome.wustl.edu 37 15 85327029 85327029 + Missense_Mutation SNP G G A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 15 85327029 85327029 G A SNP ZNF592 ENST00000299927 human ensembl 74_37 +1 known missense c.1123 p.V375M 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF592 HGNC ENSG00000166716 79 0 0 51 20 28.169 CHST6 0 genome.wustl.edu 37 16 75513350 75513350 + Missense_Mutation SNP C C A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 16 75513350 75513350 C A SNP CHST6 ENST00000332272 human ensembl 74_37 -1 known missense c.377 p.S126I 1.000 pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase - no_errors CHST6 HGNC ENSG00000183196 89 0 0 59 23 28.0488 KIAA0513 0 genome.wustl.edu 37 16 85120758 85120758 + Missense_Mutation SNP G G C TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 16 85120758 85120758 G C SNP KIAA0513 ENST00000258180 human ensembl 74_37 +1 known missense c.1172 p.G391A 1.000 NULL pfam_SBF2 - no_errors KIAA0513 HGNC ENSG00000135709 61 0 0 40 10 20 SLC13A2 0 genome.wustl.edu 37 17 26823469 26823469 + Missense_Mutation SNP C C A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 17 26823469 26823469 C A SNP SLC13A2 ENST00000444914 human ensembl 74_37 +1 known missense c.1619 p.A540D 1.000 pfam_Na/sul_symport,pfam_Cit_transptr-like_dom pfam_Na/sul_symport,pfam_Cit_transptr-like_dom - no_errors SLC13A2 HGNC ENSG00000007216 229 0 0 148 51 25.6281 CCDC40 0 genome.wustl.edu 37 17 78013901 78013901 + Silent SNP A A G TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 17 78013901 78013901 A G SNP CCDC40 ENST00000397545 human ensembl 74_37 +1 known silent c.384 p.A128 0.000 NULL pfam_E3_ubiquit_lig_BRE1 - no_errors CCDC40 HGNC ENSG00000141519 80 0 0 80 7 8.04598 COLEC12 0 genome.wustl.edu 37 18 331713 331713 + Missense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 18 331713 331713 C T SNP COLEC12 ENST00000400256 human ensembl 74_37 -1 known missense c.2018 p.R673H 0.002 pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin - no_errors COLEC12 HGNC ENSG00000158270 47 0 0 47 16 25.3968 SMAD4 0 genome.wustl.edu 37 18 48593406 48593406 + Missense_Mutation SNP G G A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 18 48593406 48593406 G A SNP SMAD4 ENST00000342988 human ensembl 74_37 +1 known missense c.1157 p.G386D 1.000 pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type - no_errors SMAD4 HGNC ENSG00000141646 128 0 0 41 35 46.0526 SALL3 0 genome.wustl.edu 37 18 76753965 76753965 + Silent SNP G G A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 18 76753965 76753965 G A SNP SALL3 ENST00000537592 human ensembl 74_37 +1 known silent c.1974 p.T658 0.943 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SALL3 HGNC ENSG00000256463 17 0 0 4 5 55.5556 STK11 0 genome.wustl.edu 37 19 1221993 1221993 + Missense_Mutation SNP T T A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 19 1221993 1221993 T A SNP STK11 ENST00000326873 human ensembl 74_37 +1 known missense c.908 p.I303N 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors STK11 HGNC ENSG00000118046 11 0 0 5 3 37.5 RBM42 0 genome.wustl.edu 37 19 36120513 36120513 + Missense_Mutation SNP G G T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 19 36120513 36120513 G T SNP RBM42 ENST00000262633 human ensembl 74_37 +1 known missense c.220 p.A74S 0.957 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RBM42 HGNC ENSG00000126254 125 0 0 87 25 22.3214 MUC16 0 genome.wustl.edu 37 19 9089662 9089662 + Missense_Mutation SNP G G T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 19 9089662 9089662 G T SNP MUC16 ENST00000397910 human ensembl 74_37 -1 known missense c.2153 p.T718N 0.000 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom - no_errors MUC16 HGNC ENSG00000181143 72 0 0 53 24 31.1688 MZT2A 0 genome.wustl.edu 37 2 132249846 132249846 + Missense_Mutation SNP G G C TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 2 132249846 132249846 G C SNP MZT2A ENST00000309451 human ensembl 74_37 -1 known missense c.104 p.T35S 1.000 NULL NULL - no_errors MZT2A HGNC ENSG00000173272 9 0 0 8 6 42.8571 MMADHC 0 genome.wustl.edu 37 2 150426628 150426628 + Missense_Mutation SNP G G A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 2 150426628 150426628 G A SNP MMADHC ENST00000303319 human ensembl 74_37 -1 known missense c.751 p.H251Y 0.999 pfam_MMADHC pfam_MMADHC - no_errors MMADHC HGNC ENSG00000168288 52 0 0 34 37 52.1127 TTN 0 genome.wustl.edu 37 2 179452394 179452394 + Silent SNP A A G TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 2 179452394 179452394 A G SNP TTN ENST00000342992 human ensembl 74_37 -1 known silent c.55938 p.D18646 1.000 pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 38 0 0 32 12 27.2727 DNAJC5G 0 genome.wustl.edu 37 2 27499657 27499657 + Missense_Mutation SNP G G A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 2 27499657 27499657 G A SNP DNAJC5G ENST00000296097 human ensembl 74_37 +1 known missense c.61 p.V21M 1.000 superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain - no_errors DNAJC5G HGNC ENSG00000163793 98 0 0 59 14 19.1781 ENSG00000161103 0 genome.wustl.edu 37 22 18844763 18844763 + RNA SNP T T C TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 22 18844763 18844763 T C SNP ENSG00000161103 ENST00000412938 human ensembl 74_37 +1 known rna NULL NULL 0.006 - - - no_errors AC008132.13 Clone_based_vega_gene ENSG00000161103 15 0 0 15 3 16.6667 KIAA1524 0 genome.wustl.edu 37 3 108298210 108298210 + Missense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 3 108298210 108298210 C T SNP KIAA1524 ENST00000295746 human ensembl 74_37 -1 known missense c.736 p.D246N 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors KIAA1524 HGNC ENSG00000163507 114 0 0 116 32 21.6216 ATR 0 genome.wustl.edu 37 3 142268402 142268402 + Silent SNP T T G TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 3 142268402 142268402 T G SNP ATR ENST00000350721 human ensembl 74_37 -1 known silent c.3090 p.I1030 1.000 superfamily_ARM-type_fold pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom - no_errors ATR HGNC ENSG00000175054 32 0 0 32 3 8.57143 HYAL2 0 genome.wustl.edu 37 3 50357457 50357457 + Nonsense_Mutation SNP G G T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 3 50357457 50357457 G T SNP HYAL2 ENST00000357750 human ensembl 74_37 -1 known nonsense c.464 p.S155* 1.000 pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase - no_errors HYAL2 HGNC ENSG00000068001 166 0 0 110 47 29.9363 FYN 0 genome.wustl.edu 37 6 112035642 112035642 + Silent SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 6 112035642 112035642 C T SNP FYN ENST00000354650 human ensembl 74_37 -1 known silent c.252 p.V84 0.998 superfamily_SH3_domain,pfscan_SH3_domain pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain - no_errors FYN HGNC ENSG00000010810 53 0 0 50 15 23.0769 FAM65B 0 genome.wustl.edu 37 6 24861261 24861261 + Missense_Mutation SNP T T A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 6 24861261 24861261 T A SNP FAM65B ENST00000259698 human ensembl 74_37 -1 known missense c.568 p.M190L 0.999 NULL superfamily_ARM-type_fold - no_errors FAM65B HGNC ENSG00000111913 26 0 0 13 14 51.8519 FAM131B 0 genome.wustl.edu 37 7 143056064 143056064 + Missense_Mutation SNP C C T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 7 143056064 143056064 C T SNP FAM131B ENST00000443739 human ensembl 74_37 -1 known missense c.322 p.G108S 1.000 NULL NULL - no_errors FAM131B HGNC ENSG00000159784 38 0 0 28 9 24.3243 PCLO 0 genome.wustl.edu 37 7 82784907 82784907 + Silent SNP T T C TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 7 82784907 82784907 T C SNP PCLO ENST00000333891 human ensembl 74_37 -1 known silent c.1050 p.K350 0.000 NULL pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ - no_errors PCLO HGNC ENSG00000186472 31 0 0 19 13 40.625 AZGP1P1 0 genome.wustl.edu 37 7 99580937 99580937 + RNA SNP T T A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 7 99580937 99580937 T A SNP AZGP1P1 ENST00000425474 human ensembl 74_37 +1 known rna NULL NULL 0.984 - - - no_errors AZGP1P1 HGNC ENSG00000214313 29 0 0 19 5 20.8333 OR13D1 0 genome.wustl.edu 37 9 107457321 107457321 + Missense_Mutation SNP G G T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 9 107457321 107457321 G T SNP OR13D1 ENST00000318763 human ensembl 74_37 +1 known missense c.619 p.D207Y 0.455 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR13D1 HGNC ENSG00000179055 174 0 0 107 40 27.2109 SPTAN1 0 genome.wustl.edu 37 9 131329027 131329027 + Missense_Mutation SNP C C A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 9 131329027 131329027 C A SNP SPTAN1 ENST00000358161 human ensembl 74_37 +1 known missense c.8 p.P3Q 1.000 NULL pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain - no_errors SPTAN1 HGNC ENSG00000197694 115 0 0 77 43 35.8333 MAMDC2 0 genome.wustl.edu 37 9 72758553 72758553 + Silent SNP T T C TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 9 72758553 72758553 T C SNP MAMDC2 ENST00000377182 human ensembl 74_37 +1 known silent c.1222 p.L408 0.768 pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom - no_errors MAMDC2 HGNC ENSG00000165072 86 0 0 66 32 32.6531 KIF27 0 genome.wustl.edu 37 9 86514643 86514643 + Missense_Mutation SNP A A C TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 9 86514643 86514643 A C SNP KIF27 ENST00000297814 human ensembl 74_37 -1 known missense c.1535 p.M512R 0.525 NULL pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF27 HGNC ENSG00000165115 92 0 0 83 16 16.1616 USP51 0 genome.wustl.edu 37 X 55513296 55513296 + Silent SNP A A G TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 X 55513296 55513296 A G SNP USP51 ENST00000500968 human ensembl 74_37 -1 known silent c.2077 p.L693 1.000 pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67 - no_errors USP51 HGNC ENSG00000247746 61 0 0 38 17 30.9091 MIR620 0 genome.wustl.edu 37 12 116586415 116586418 + RNA DEL TATA TATA - TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 TATA TATA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 12 116586415 116586418 TATA - DEL MIR620 ENST00000385232 human ensembl 74_37 -1 known rna NULL NULL 0.000:0.000:0.000:0.000 - - - no_errors MIR620 HGNC ENSG00000207967 9 0 0 0 5 100 TTLL5 0 genome.wustl.edu 37 14 76420882 76420882 + RNA DEL T T - TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 14 76420882 76420882 T - DEL TTLL5 ENST00000554972 human ensembl 74_37 +1 known rna NULL NULL 0.005 - - - no_errors TTLL5 HGNC ENSG00000119685 34 0 0 15 4 21.0526 LOC100130950 0 genome.wustl.edu 37 17 5126838 5126839 + RNA INS - - T TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 17 5126838 5126839 - T INS LOC100130950 ENST00000575601 human ensembl 74_37 +1 known rna NULL NULL 0.000:0.000 - - - no_errors RP11-333E1.1 Clone_based_vega_gene ENSG00000261879 25 0 0 23 4 14.8148 SLC22A3 0 genome.wustl.edu 37 6 160829854 160829855 + Frame_Shift_Ins INS - - A TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 6 160829854 160829855 - A INS SLC22A3 ENST00000392145 human ensembl 74_37 +1 known frame_shift_ins c.758_759 p.I254fs 0.924:0.960 pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp - no_errors SLC22A3 HGNC ENSG00000146477 92 0 0 54 23 29.8701 CLIP2 0 genome.wustl.edu 37 7 73790499 73790500 + In_Frame_Ins INS - - AGG TCGA-BR-A4J6-01A-11D-A25D-08 TCGA-BR-A4J6-10A-01D-A25E-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cdf42f08-5348-4fdf-916f-690fa42dbf1a d60221e2-c5fc-4d88-aa85-5b46712ce4c8 7 73790499 73790500 - AGG INS CLIP2 ENST00000223398 human ensembl 74_37 +1 known in_frame_ins c.1768_1769 p.592in_frame_insE 0.989:0.999 superfamily_t-SNARE pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain - no_errors CLIP2 HGNC ENSG00000106665 63 0 0 27 8 22.8571