Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF SHE 0 genome.wustl.edu 37 1 154474183 154474183 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 154474183 154474183 C T SNP SHE ENST00000304760 human ensembl 74_37 -1 known missense c.320 p.S107N 1.000 NULL pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2 - no_errors SHE HGNC ENSG00000169291 19 0 0 13 3 18.75 PTPRC 0 genome.wustl.edu 37 1 198676006 198676006 + Nonsense_Mutation SNP A A T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 198676006 198676006 A T SNP PTPRC ENST00000442510 human ensembl 74_37 +1 known nonsense c.829 p.K277* 0.000 pirsf_Leukocyte_common_ag,pfam_Leukocyte_common_ag pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRC HGNC ENSG00000081237 67 0 0 80 9 10.1124 PRKCZ 0 genome.wustl.edu 37 1 2082347 2082347 + Missense_Mutation SNP T T C TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 2082347 2082347 T C SNP PRKCZ ENST00000378567 human ensembl 74_37 +1 known missense c.806 p.V269A 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd - no_errors PRKCZ HGNC ENSG00000067606 73 0 0 52 4 7.14286 DIEXF 0 genome.wustl.edu 37 1 210008472 210008472 + Silent SNP T T A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 210008472 210008472 T A SNP DIEXF ENST00000491415 human ensembl 74_37 +1 known silent c.615 p.A205 0.001 NULL pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase - no_errors DIEXF HGNC ENSG00000117597 53 0 0 63 4 5.97015 ARID1A 0 genome.wustl.edu 37 1 27057730 27057730 + Nonsense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 27057730 27057730 C T SNP ARID1A ENST00000324856 human ensembl 74_37 +1 known nonsense c.1438 p.Q480* 1.000 NULL pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID1A HGNC ENSG00000117713 285 1 0.34965 276 21 7.07071 C1orf109 0 genome.wustl.edu 37 1 38155399 38155399 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 38155399 38155399 C T SNP C1orf109 ENST00000358011 human ensembl 74_37 -1 known missense c.154 p.A52T 0.000 NULL NULL - no_errors C1orf109 HGNC ENSG00000116922 96 0 0 54 4 6.89655 USP24 0 genome.wustl.edu 37 1 55619860 55619860 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 55619860 55619860 C A SNP USP24 ENST00000407756 human ensembl 74_37 -1 known missense c.1312 p.D438Y 1.000 NULL pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67 - no_errors USP24 HGNC ENSG00000162402 26 0 0 32 5 13.5135 FPGT-TNNI3K 0 genome.wustl.edu 37 1 75009634 75009634 + Nonsense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 1 75009634 75009634 C T SNP FPGT-TNNI3K ENST00000557284 human ensembl 74_37 +1 known nonsense c.2818 p.R940* 0.914 NULL pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors FPGT-TNNI3K HGNC ENSG00000259030 43 0 0 29 3 9.375 HPS6 0 genome.wustl.edu 37 10 103826207 103826207 + Missense_Mutation SNP T T C TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 10 103826207 103826207 T C SNP HPS6 ENST00000299238 human ensembl 74_37 +1 known missense c.976 p.C326R 1.000 pirsf_BLOC-2_complex_Hps6_subunit pirsf_BLOC-2_complex_Hps6_subunit - no_errors HPS6 HGNC ENSG00000166189 112 0 0 55 3 5.17241 CCDC147 0 genome.wustl.edu 37 10 106159127 106159127 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 10 106159127 106159127 C A SNP CCDC147 ENST00000369704 human ensembl 74_37 +1 known missense c.1684 p.Q562K 1.000 NULL superfamily_Homeodomain-like - no_errors CCDC147 HGNC ENSG00000120051 33 0 0 23 4 14.8148 GPR158 0 genome.wustl.edu 37 10 25886899 25886899 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 10 25886899 25886899 G A SNP GPR158 ENST00000376351 human ensembl 74_37 +1 known missense c.2344 p.A782T 0.128 NULL pfam_GPCR_3_C,pfscan_GPCR_3_C - no_errors GPR158 HGNC ENSG00000151025 111 0 0 106 7 6.19469 WAPAL 0 genome.wustl.edu 37 10 88213535 88213535 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 10 88213535 88213535 C T SNP WAPAL ENST00000298767 human ensembl 74_37 -1 known missense c.2711 p.S904N 1.000 pfam_WAPL_prot,superfamily_ARM-type_fold pfam_WAPL_prot,superfamily_ARM-type_fold - no_errors WAPAL HGNC ENSG00000062650 38 0 0 45 3 6.25 NAV2 0 genome.wustl.edu 37 11 20113856 20113856 + Silent SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 11 20113856 20113856 G T SNP NAV2 ENST00000396087 human ensembl 74_37 +1 known silent c.5934 p.P1978 0.000 NULL pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain - no_errors NAV2 HGNC ENSG00000166833 120 0 0 126 7 5.26316 GYLTL1B 0 genome.wustl.edu 37 11 45949117 45949117 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 11 45949117 45949117 C A SNP GYLTL1B ENST00000325468 human ensembl 74_37 +1 known missense c.1577 p.P526H 1.000 NULL pfam_Glyco_trans_8 - no_errors GYLTL1B HGNC ENSG00000165905 180 0 0 129 9 6.52174 PATL1 0 genome.wustl.edu 37 11 59420345 59420345 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 11 59420345 59420345 C A SNP PATL1 ENST00000300146 human ensembl 74_37 -1 known missense c.1268 p.S423I 1.000 pfam_Topo_II-assoc_PAT1 pfam_Topo_II-assoc_PAT1 - no_errors PATL1 HGNC ENSG00000166889 57 0 0 46 4 8 TPCN2 0 genome.wustl.edu 37 11 68822759 68822759 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 11 68822759 68822759 G A SNP TPCN2 ENST00000294309 human ensembl 74_37 +1 known missense c.368 p.G123D 1.000 NULL pfam_Ion_trans_dom - no_errors TPCN2 HGNC ENSG00000162341 113 0 0 55 3 5.17241 KRT76 0 genome.wustl.edu 37 12 53169377 53169377 + Missense_Mutation SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 12 53169377 53169377 G T SNP KRT76 ENST00000332411 human ensembl 74_37 -1 known missense c.610 p.L204M 1.000 pfam_IF pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I - no_errors KRT76 HGNC ENSG00000185069 117 0 0 81 7 7.95455 MIP 0 genome.wustl.edu 37 12 56847476 56847476 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 12 56847476 56847476 C T SNP MIP ENST00000257979 human ensembl 74_37 -1 known missense c.424 p.V142M 1.000 pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP - no_errors MIP HGNC ENSG00000135517 66 0 0 30 3 9.09091 PTPRB 0 genome.wustl.edu 37 12 70956659 70956659 + Missense_Mutation SNP T T A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 12 70956659 70956659 T A SNP PTPRB ENST00000334414 human ensembl 74_37 -1 known missense c.4133 p.E1378V 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRB HGNC ENSG00000127329 57 0 0 58 8 12.1212 PPFIA2 0 genome.wustl.edu 37 12 81741521 81741521 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 12 81741521 81741521 C T SNP PPFIA2 ENST00000549396 human ensembl 74_37 -1 known missense c.2023 p.E675K 1.000 NULL pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM - no_errors PPFIA2 HGNC ENSG00000139220 81 0 0 80 5 5.88235 FREM2 0 genome.wustl.edu 37 13 39263660 39263660 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 13 39263660 39263660 C T SNP FREM2 ENST00000280481 human ensembl 74_37 +1 known missense c.2179 p.R727C 1.000 NULL pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta - no_errors FREM2 HGNC ENSG00000150893 64 0 0 49 3 5.76923 CYP46A1 0 genome.wustl.edu 37 14 100173033 100173033 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 14 100173033 100173033 G A SNP CYP46A1 ENST00000261835 human ensembl 74_37 +1 known missense c.493 p.V165M 1.000 pfam_Cyt_P450,superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV - no_errors CYP46A1 HGNC ENSG00000036530 86 0 0 54 3 5.26316 C14orf1 0 genome.wustl.edu 37 14 76118161 76118161 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 14 76118161 76118161 C T SNP C14orf1 ENST00000256319 human ensembl 74_37 -1 known missense c.296 p.G99E 0.986 pfam_Erg28 pfam_Erg28 - no_errors C14orf1 HGNC ENSG00000133935 86 0 0 71 5 6.57895 RYR3 0 genome.wustl.edu 37 15 34078174 34078174 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 15 34078174 34078174 C T SNP RYR3 ENST00000389232 human ensembl 74_37 +1 known missense c.9580 p.R3194C 1.000 superfamily_ARM-type_fold pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif - no_errors RYR3 HGNC ENSG00000198838 189 0 0 130 8 5.7971 HCN4 0 genome.wustl.edu 37 15 73616535 73616535 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 15 73616535 73616535 G A SNP HCN4 ENST00000261917 human ensembl 74_37 -1 known missense c.2038 p.R680C 1.000 pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom - no_errors HCN4 HGNC ENSG00000138622 72 0 0 71 5 6.57895 PTX4 0 genome.wustl.edu 37 16 1537353 1537353 + Silent SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 16 1537353 1537353 G T SNP PTX4 ENST00000447419 human ensembl 74_37 -1 known silent c.760 p.R254 0.005 NULL pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin - no_errors PTX4 HGNC ENSG00000251692 72 0 0 37 3 7.5 IRX6 0 genome.wustl.edu 37 16 55363168 55363168 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 16 55363168 55363168 G A SNP IRX6 ENST00000290552 human ensembl 74_37 +1 known silent c.1278 p.P426 0.003 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom - no_errors IRX6 HGNC ENSG00000159387 112 0 0 68 7 9.33333 POLR2C 0 genome.wustl.edu 37 16 57496981 57496981 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 16 57496981 57496981 C T SNP POLR2C ENST00000219252 human ensembl 74_37 +1 known missense c.127 p.P43S 0.999 pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3 pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3 - no_errors POLR2C HGNC ENSG00000102978 48 0 0 32 2 5.88235 SLC12A4 0 genome.wustl.edu 37 16 67986303 67986303 + Missense_Mutation SNP A A G TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 16 67986303 67986303 A G SNP SLC12A4 ENST00000422611 human ensembl 74_37 -1 known missense c.707 p.I236T 1.000 pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS - no_errors SLC12A4 HGNC ENSG00000124067 85 0 0 76 5 6.17284 CDH1 0 genome.wustl.edu 37 16 68847398 68847398 + Missense_Mutation SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 16 68847398 68847398 G T SNP CDH1 ENST00000261769 human ensembl 74_37 +1 known missense c.1320 p.K440N 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 269 1 0.37037 242 22 8.33333 FANCA 0 genome.wustl.edu 37 16 89857935 89857935 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 16 89857935 89857935 G A SNP FANCA ENST00000389301 human ensembl 74_37 -1 known missense c.1235 p.A412V 0.674 NULL pfam_Fanconia,prints_Fanconia - no_errors FANCA HGNC ENSG00000187741 36 0 0 18 4 18.1818 DNAH2 0 genome.wustl.edu 37 17 7646393 7646393 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 17 7646393 7646393 C T SNP DNAH2 ENST00000389173 human ensembl 74_37 +1 known missense c.1837 p.R613W 0.972 pfam_Dynein_heavy_dom-1 pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DNAH2 HGNC ENSG00000183914 90 0 0 38 4 9.52381 ODF4 0 genome.wustl.edu 37 17 8243564 8243564 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 17 8243564 8243564 G A SNP ODF4 ENST00000328248 human ensembl 74_37 +1 known silent c.195 p.P65 0.000 NULL NULL - no_errors ODF4 HGNC ENSG00000184650 41 0 0 31 5 13.8889 PIK3R6 0 genome.wustl.edu 37 17 8706636 8706636 + Silent SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 17 8706636 8706636 C T SNP PIK3R6 ENST00000311434 human ensembl 74_37 -1 known silent c.2217 p.K739 0.344 pfam_PI3K_1B_gamma_p101_su pfam_PI3K_1B_gamma_p101_su - no_errors PIK3R6 HGNC ENSG00000174083 79 0 0 51 4 7.27273 WDR16 0 genome.wustl.edu 37 17 9511501 9511501 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 17 9511501 9511501 G A SNP WDR16 ENST00000299764 human ensembl 74_37 +1 known silent c.849 p.L283 0.999 superfamily_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR16 HGNC ENSG00000166596 49 0 0 25 2 7.40741 ALPK2 0 genome.wustl.edu 37 18 56246747 56246747 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 18 56246747 56246747 C T SNP ALPK2 ENST00000361673 human ensembl 74_37 -1 known missense c.1261 p.G421S 0.001 NULL pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom - no_errors ALPK2 HGNC ENSG00000198796 98 0 0 74 5 6.32911 CDH20 0 genome.wustl.edu 37 18 59221602 59221602 + Missense_Mutation SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 18 59221602 59221602 G T SNP CDH20 ENST00000262717 human ensembl 74_37 +1 known missense c.2080 p.A694S 0.897 pfam_Cadherin_cytoplasmic-dom pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH20 HGNC ENSG00000101542 73 0 0 71 4 5.33333 CTDP1 0 genome.wustl.edu 37 18 77456043 77456043 + Silent SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 18 77456043 77456043 C T SNP CTDP1 ENST00000299543 human ensembl 74_37 +1 known silent c.465 p.S155 0.990 NULL pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk - no_errors CTDP1 HGNC ENSG00000060069 34 0 0 32 6 15.7895 ZNF44 0 genome.wustl.edu 37 19 12384413 12384413 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 19 12384413 12384413 G A SNP ZNF44 ENST00000393337 human ensembl 74_37 -1 known silent c.801 p.H267 1.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF44 HGNC ENSG00000197857 102 0 0 130 8 5.7971 ZNF546 0 genome.wustl.edu 37 19 40519650 40519650 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 19 40519650 40519650 C A SNP ZNF546 ENST00000347077 human ensembl 74_37 +1 known missense c.473 p.T158K 0.080 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF546 HGNC ENSG00000187187 22 0 0 52 3 5.45455 IRGC 0 genome.wustl.edu 37 19 44223776 44223776 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 19 44223776 44223776 C T SNP IRGC ENST00000244314 human ensembl 74_37 +1 known missense c.1066 p.R356W 0.913 NULL pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase - no_errors IRGC HGNC ENSG00000124449 57 0 0 36 2 5.26316 ZNF550 0 genome.wustl.edu 37 19 58058384 58058384 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 19 58058384 58058384 G A SNP ZNF550 ENST00000376230 human ensembl 74_37 -1 known missense c.1228 p.R410C 0.004 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF550 HGNC ENSG00000251369 94 0 0 57 4 6.55738 ZNF814 0 genome.wustl.edu 37 19 58385546 58385546 + Missense_Mutation SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 19 58385546 58385546 G T SNP ZNF814 ENST00000435989 human ensembl 74_37 -1 known missense c.1212 p.D404E 0.000 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF814 HGNC ENSG00000204514 8 0 0 13 3 18.75 ADAMTS10 0 genome.wustl.edu 37 19 8668717 8668717 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 19 8668717 8668717 C A SNP ADAMTS10 ENST00000270328 human ensembl 74_37 -1 known missense c.487 p.G163C 0.234 pfam_Peptidase_M12B_N pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS10 HGNC ENSG00000142303 58 0 0 41 3 6.81818 MYO7B 0 genome.wustl.edu 37 2 128377979 128377979 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 2 128377979 128377979 C T SNP MYO7B ENST00000389524 human ensembl 74_37 +1 known missense c.3385 p.R1129W 0.986 pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom - no_errors MYO7B HGNC ENSG00000169994 71 0 0 42 6 12.5 TTN 0 genome.wustl.edu 37 2 179395780 179395780 + Missense_Mutation SNP T T A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 2 179395780 179395780 T A SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.97858 p.I32620F 1.000 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 270 0 0 243 13 5.07812 UGT1A8 0 genome.wustl.edu 37 2 234669274 234669274 + Missense_Mutation SNP A A T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 2 234669274 234669274 A T SNP UGT1A8 ENST00000305208 human ensembl 74_37 +1 known missense c.341 p.K114M 0.000 pfam_UDP_glucos_trans pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C - no_errors UGT1A8 HGNC ENSG00000242366 127 0 0 91 5 5.20833 MTERFD2 0 genome.wustl.edu 37 2 242035431 242035431 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 2 242035431 242035431 G A SNP MTERFD2 ENST00000241527 human ensembl 74_37 -1 known silent c.1128 p.D376 0.027 NULL pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel - no_errors MTERFD2 HGNC ENSG00000122085 112 0 0 100 8 7.40741 TSSC1 0 genome.wustl.edu 37 2 3341900 3341900 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 2 3341900 3341900 G A SNP TSSC1 ENST00000382125 human ensembl 74_37 -1 known silent c.147 p.D49 0.414 NULL pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TSSC1 HGNC ENSG00000032389 37 0 0 42 3 6.66667 LRRTM1 0 genome.wustl.edu 37 2 80530382 80530382 + Missense_Mutation SNP T T C TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 2 80530382 80530382 T C SNP LRRTM1 ENST00000295057 human ensembl 74_37 -1 known missense c.563 p.K188R 1.000 pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRTM1 HGNC ENSG00000162951 85 0 0 89 5 5.31915 CPXM1 0 genome.wustl.edu 37 20 2777046 2777046 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 20 2777046 2777046 C A SNP CPXM1 ENST00000380605 human ensembl 74_37 -1 known missense c.1089 p.E363D 1.000 pfam_Peptidase_M14,prints_Peptidase_M14 pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14 - no_errors CPXM1 HGNC ENSG00000088882 116 0 0 81 5 5.81395 RBM12 0 genome.wustl.edu 37 20 34243149 34243149 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 20 34243149 34243149 G A SNP RBM12 ENST00000359646 human ensembl 74_37 -1 known silent c.96 p.G32 1.000 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RBM12 HGNC ENSG00000244462 49 0 0 31 3 8.82353 KRTAP12-2 0 genome.wustl.edu 37 21 46086407 46086407 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 21 46086407 46086407 C T SNP KRTAP12-2 ENST00000360770 human ensembl 74_37 -1 known missense c.397 p.V133I 0.003 NULL pfam_KRTAP_PMG - no_errors KRTAP12-2 HGNC ENSG00000221864 102 0 0 49 6 10.9091 COL18A1 0 genome.wustl.edu 37 21 46875460 46875460 + Missense_Mutation SNP T T C TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 21 46875460 46875460 T C SNP COL18A1 ENST00000359759 human ensembl 74_37 +1 known missense c.16 p.C6R 0.795 NULL pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom - no_errors COL18A1 HGNC ENSG00000182871 85 0 0 65 4 5.7971 ARFGAP3 0 genome.wustl.edu 37 22 43195060 43195060 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 22 43195060 43195060 G A SNP ARFGAP3 ENST00000263245 human ensembl 74_37 -1 known silent c.1518 p.V506 0.993 NULL pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP - no_errors ARFGAP3 HGNC ENSG00000242247 190 0 0 208 15 6.72646 SBF1 0 genome.wustl.edu 37 22 50900900 50900900 + Silent SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 22 50900900 50900900 C T SNP SBF1 ENST00000380817 human ensembl 74_37 -1 known silent c.2130 p.E710 0.988 pfam_SBF2 pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology - no_errors SBF1 HGNC ENSG00000100241 85 0 0 79 5 5.95238 KCNMB3 0 genome.wustl.edu 37 3 178962330 178962330 + Missense_Mutation SNP T T C TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 3 178962330 178962330 T C SNP KCNMB3 ENST00000314235 human ensembl 74_37 -1 known missense c.412 p.K138E 0.978 pfam_K_chnl_Ca-activ_BK_bsu pfam_K_chnl_Ca-activ_BK_bsu - no_errors KCNMB3 HGNC ENSG00000171121 124 0 0 70 7 9.09091 SATB1 0 genome.wustl.edu 37 3 18390940 18390940 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 3 18390940 18390940 C T SNP SATB1 ENST00000417717 human ensembl 74_37 -1 known missense c.2110 p.E704K 1.000 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT - no_errors SATB1 HGNC ENSG00000182568 167 1 0.595238 93 14 13.0841 APOD 0 genome.wustl.edu 37 3 195295971 195295971 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 3 195295971 195295971 C T SNP APOD ENST00000343267 human ensembl 74_37 -1 known missense c.370 p.D124N 1.000 pfam_Lipocln_cytosolic_FA-bd_dom,pfam_Triabin_pallidipin/procalin,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_Invtbrt_color,prints_Lipocalin pfam_Lipocln_cytosolic_FA-bd_dom,pfam_Triabin_pallidipin/procalin,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_ApolipopD,prints_Invtbrt_color,prints_Lipocalin,prints_Lipocalin_bac - no_errors APOD HGNC ENSG00000189058 116 0 0 84 6 6.66667 WDR17 0 genome.wustl.edu 37 4 177073081 177073081 + Missense_Mutation SNP T T A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 4 177073081 177073081 T A SNP WDR17 ENST00000280190 human ensembl 74_37 +1 known missense c.2495 p.I832N 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR17 HGNC ENSG00000150627 45 0 0 60 4 6.25 POLN 0 genome.wustl.edu 37 4 2082754 2082754 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 4 2082754 2082754 G A SNP POLN ENST00000382865 human ensembl 74_37 -1 known missense c.2318 p.A773V 0.139 pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A - no_errors POLN HGNC ENSG00000130997 100 0 0 67 4 5.6338 RGS12 0 genome.wustl.edu 37 4 3319265 3319265 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 4 3319265 3319265 G A SNP RGS12 ENST00000344733 human ensembl 74_37 +1 known silent c.1368 p.A456 0.104 NULL pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom - no_errors RGS12 HGNC ENSG00000159788 81 0 0 54 3 5.26316 SOWAHB 0 genome.wustl.edu 37 4 77817362 77817362 + Silent SNP T T C TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 4 77817362 77817362 T C SNP SOWAHB ENST00000334306 human ensembl 74_37 -1 known silent c.1641 p.L547 0.011 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors SOWAHB HGNC ENSG00000186212 65 0 0 37 4 9.7561 FGF5 0 genome.wustl.edu 37 4 81188284 81188284 + Missense_Mutation SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 4 81188284 81188284 G T SNP FGF5 ENST00000312465 human ensembl 74_37 +1 known missense c.306 p.Q102H 1.000 pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam - no_errors FGF5 HGNC ENSG00000138675 82 0 0 59 6 9.23077 SNCAIP 0 genome.wustl.edu 37 5 121759300 121759300 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 5 121759300 121759300 G A SNP SNCAIP ENST00000379533 human ensembl 74_37 +1 known missense c.1009 p.A337T 0.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors SNCAIP HGNC ENSG00000064692 64 0 0 54 4 6.89655 PCDHA7 0 genome.wustl.edu 37 5 140215247 140215247 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 5 140215247 140215247 G A SNP PCDHA7 ENST00000525929 human ensembl 74_37 +1 known missense c.1279 p.A427T 0.992 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA7 HGNC ENSG00000204963 212 0 0 128 9 6.56934 PCDHB10 0 genome.wustl.edu 37 5 140572186 140572186 + Missense_Mutation SNP T T G TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 5 140572186 140572186 T G SNP PCDHB10 ENST00000239446 human ensembl 74_37 +1 known missense c.61 p.W21G 0.000 NULL pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB10 HGNC ENSG00000120324 153 0 0 121 14 10.3704 ADCY2 0 genome.wustl.edu 37 5 7784525 7784525 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 5 7784525 7784525 C A SNP ADCY2 ENST00000338316 human ensembl 74_37 +1 known missense c.2432 p.S811Y 1.000 NULL pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase - no_errors ADCY2 HGNC ENSG00000078295 50 0 0 76 4 5 C6orf25 0 genome.wustl.edu 37 6 31691520 31691520 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 6 31691520 31691520 C A SNP C6orf25 ENST00000375806 human ensembl 74_37 +1 known missense c.166 p.L56M 0.715 NULL NULL - no_errors C6orf25 HGNC ENSG00000204420 84 0 0 43 4 8.51064 NOTCH4 0 genome.wustl.edu 37 6 32188872 32188872 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 6 32188872 32188872 C T SNP NOTCH4 ENST00000375023 human ensembl 74_37 -1 known missense c.682 p.G228S 0.303 pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom - no_errors NOTCH4 HGNC ENSG00000204301 68 0 0 51 3 5.55556 ZBTB22 0 genome.wustl.edu 37 6 33283022 33283022 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 6 33283022 33283022 G A SNP ZBTB22 ENST00000418724 human ensembl 74_37 -1 known missense c.1672 p.R558C 1.000 smart_Znf_C2H2-like pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB22 HGNC ENSG00000236104 100 0 0 68 4 5.55556 KCND2 0 genome.wustl.edu 37 7 119915599 119915599 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 7 119915599 119915599 C T SNP KCND2 ENST00000331113 human ensembl 74_37 +1 known missense c.913 p.R305C 1.000 pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3 - no_errors KCND2 HGNC ENSG00000184408 60 0 0 57 3 5 OR2A5 0 genome.wustl.edu 37 7 143747810 143747810 + Missense_Mutation SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 7 143747810 143747810 G T SNP OR2A5 ENST00000408906 human ensembl 74_37 +1 known missense c.316 p.A106S 0.997 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2A5 HGNC ENSG00000221836 206 1 0.483092 124 14 10.1449 ZNF467 0 genome.wustl.edu 37 7 149461947 149461947 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 7 149461947 149461947 G A SNP ZNF467 ENST00000302017 human ensembl 74_37 -1 known silent c.1644 p.C548 0.999 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF467 HGNC ENSG00000181444 62 0 0 24 4 14.2857 USP42 0 genome.wustl.edu 37 7 6189448 6189448 + Missense_Mutation SNP C C A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 7 6189448 6189448 C A SNP USP42 ENST00000306177 human ensembl 74_37 +1 known missense c.1621 p.L541I 0.002 NULL pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 - no_errors USP42 HGNC ENSG00000106346 55 0 0 75 4 5.06329 COL28A1 0 genome.wustl.edu 37 7 7484115 7484115 + Silent SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 7 7484115 7484115 C T SNP COL28A1 ENST00000399429 human ensembl 74_37 -1 known silent c.1515 p.E505 1.000 pfam_Collagen pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m - no_errors COL28A1 HGNC ENSG00000215018 77 0 0 47 6 11.3208 DLC1 0 genome.wustl.edu 37 8 12973125 12973125 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 8 12973125 12973125 C T SNP DLC1 ENST00000276297 human ensembl 74_37 -1 known missense c.1390 p.G464S 1.000 pfam_SAM_2 pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom - no_errors DLC1 HGNC ENSG00000164741 46 0 0 37 3 7.5 SARDH 0 genome.wustl.edu 37 9 136597555 136597555 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 9 136597555 136597555 C T SNP SARDH ENST00000371872 human ensembl 74_37 -1 known missense c.500 p.R167K 1.000 pfam_FAD-dep_OxRdtase pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C - no_errors SARDH HGNC ENSG00000123453 140 0 0 102 6 5.55556 FUT7 0 genome.wustl.edu 37 9 139925278 139925278 + Missense_Mutation SNP G G T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 9 139925278 139925278 G T SNP FUT7 ENST00000314412 human ensembl 74_37 -1 known missense c.913 p.L305I 0.041 pfam_Glyco_trans_10 pfam_Glyco_trans_10 - no_errors FUT7 HGNC ENSG00000180549 41 0 0 29 3 9.375 TAF1L 0 genome.wustl.edu 37 9 32634837 32634837 + Silent SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 9 32634837 32634837 G A SNP TAF1L ENST00000242310 human ensembl 74_37 -1 known silent c.741 p.T247 0.996 pirsf_TAF1_animal pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain - no_errors TAF1L HGNC ENSG00000122728 119 0 0 85 6 6.59341 FRMPD1 0 genome.wustl.edu 37 9 37707441 37707441 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 9 37707441 37707441 G A SNP FRMPD1 ENST00000377765 human ensembl 74_37 +1 known missense c.130 p.A44T 0.006 superfamily_PDZ pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ - no_errors FRMPD1 HGNC ENSG00000070601 93 0 0 49 4 7.54717 AUH 0 genome.wustl.edu 37 9 93983132 93983132 + Silent SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 9 93983132 93983132 C T SNP AUH ENST00000375731 human ensembl 74_37 -1 known silent c.798 p.A266 0.794 NULL pfam_Crotonase_core_superfam - no_errors AUH HGNC ENSG00000148090 101 0 0 75 6 7.40741 CDC14B 0 genome.wustl.edu 37 9 99266039 99266039 + Missense_Mutation SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 9 99266039 99266039 C T SNP CDC14B ENST00000375241 human ensembl 74_37 -1 known missense c.1493 p.R498H 1.000 NULL pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat - no_errors CDC14B HGNC ENSG00000081377 47 0 0 58 5 7.93651 DCAF12L1 0 genome.wustl.edu 37 X 125686436 125686436 + Silent SNP C C T TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 X 125686436 125686436 C T SNP DCAF12L1 ENST00000371126 human ensembl 74_37 -1 known silent c.156 p.A52 0.200 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DCAF12L1 HGNC ENSG00000198889 65 0 0 39 3 7.14286 CNGA2 0 genome.wustl.edu 37 X 150912737 150912737 + Missense_Mutation SNP G G A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 X 150912737 150912737 G A SNP CNGA2 ENST00000329903 human ensembl 74_37 +1 known missense c.1762 p.E588K 0.625 NULL pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom - no_errors CNGA2 HGNC ENSG00000183862 118 0 0 87 6 6.45161 MT1JP 0 genome.wustl.edu 37 16 56670909 56670909 + RNA DEL T T - TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 16 56670909 56670909 T - DEL MT1JP ENST00000563395 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors MT1JP HGNC ENSG00000255986 41 0 0 25 3 10.7143 ENSG00000266775 0 genome.wustl.edu 37 17 28885453 28885454 + RNA INS - - A TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 17 28885453 28885454 - A INS ENSG00000266775 ENST00000582125 human ensembl 74_37 -1 known rna NULL NULL 0.225:0.218 - - - no_errors RP11-218M11.6 Clone_based_vega_gene ENSG00000266775 13 0 0 4 3 42.8571 TGFBR2 0 genome.wustl.edu 37 3 30691872 30691872 + Frame_Shift_Del DEL A A - TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 3 30691872 30691872 A - DEL TGFBR2 ENST00000359013 human ensembl 74_37 +1 known frame_shift_del c.449 p.K153fs 1.000 pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,prints_TGFB_receptor pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom - no_errors TGFBR2 HGNC ENSG00000163513 69 0 0 69 14 16.8675 MLXIPL 0 genome.wustl.edu 37 7 73011627 73011627 + Frame_Shift_Del DEL G G - TCGA-BR-A453-01A-11D-A24D-08 TCGA-BR-A453-10A-01D-A24F-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq fa5128d6-fb5b-4fcc-be45-ed5e899d3dab 15c0649f-0d32-4f4f-bc84-be3217c0e789 7 73011627 73011627 G - DEL MLXIPL ENST00000313375 human ensembl 74_37 -1 known frame_shift_del c.1488 p.A497fs 0.002 NULL pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom - no_errors MLXIPL HGNC ENSG00000009950 8 0 0 4 2 33.3333