Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF DENND2D 0 genome.wustl.edu 37 1 111737247 111737247 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 111737247 111737247 G A SNP DENND2D ENST00000357640 human ensembl 74_37 -1 known silent c.747 p.A249 1.000 pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom - no_errors DENND2D HGNC ENSG00000162777 62 0 0 44 20 31.25 HRNR 0 genome.wustl.edu 37 1 152189237 152189237 + Missense_Mutation SNP C C G TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 152189237 152189237 C G SNP HRNR ENST00000368801 human ensembl 74_37 -1 known missense c.4868 p.S1623T 0.000 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom - no_errors HRNR HGNC ENSG00000197915 15 0 0 8 3 27.2727 CELA2A 0 genome.wustl.edu 37 1 15789290 15789290 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 15789290 15789290 C T SNP CELA2A ENST00000359621 human ensembl 74_37 +1 known missense c.290 p.S97L 0.022 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors CELA2A HGNC ENSG00000142615 145 0 0 127 14 9.92908 OR10X1 0 genome.wustl.edu 37 1 158549420 158549420 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 158549420 158549420 C T SNP OR10X1 ENST00000368150 human ensembl 74_37 -1 known silent c.270 p.T90 0.001 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10X1 HGNC ENSG00000186400 73 0 0 64 8 11.1111 TFB2M 0 genome.wustl.edu 37 1 246729331 246729331 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 246729331 246729331 G A SNP TFB2M ENST00000366514 human ensembl 74_37 -1 known missense c.110 p.P37L 0.000 pirsf_Mt_di-Me-Ado_Trfase_2_prcur pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur - no_errors TFB2M HGNC ENSG00000162851 91 0 0 64 20 23.8095 OR2T4 0 genome.wustl.edu 37 1 248524923 248524923 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 248524923 248524923 C T SNP OR2T4 ENST00000366475 human ensembl 74_37 +1 known missense c.41 p.S14L 0.002 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2T4 HGNC ENSG00000196944 99 0 0 52 11 17.4603 C1orf123 0 genome.wustl.edu 37 1 53684566 53684566 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 53684566 53684566 C T SNP C1orf123 ENST00000294360 human ensembl 74_37 -1 known silent c.120 p.S40 0.730 pfam_DUF866_euk pfam_DUF866_euk - no_errors C1orf123 HGNC ENSG00000162384 98 0 0 54 14 20.5882 C8B 0 genome.wustl.edu 37 1 57399077 57399077 + Nonsense_Mutation SNP C C A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 57399077 57399077 C A SNP C8B ENST00000371237 human ensembl 74_37 -1 known nonsense c.1483 p.E495* 1.000 pfam_MACPF,smart_MACPF,prints_MAC_perforin pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin - no_errors C8B HGNC ENSG00000021852 87 0 0 57 16 21.9178 FAM175B 0 genome.wustl.edu 37 10 126517346 126517346 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 10 126517346 126517346 C T SNP FAM175B ENST00000298492 human ensembl 74_37 +1 known silent c.480 p.L160 0.866 prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175 prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175 - no_errors FAM175B HGNC ENSG00000165660 53 0 0 51 4 7.27273 NEBL 0 genome.wustl.edu 37 10 21097582 21097582 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 10 21097582 21097582 G A SNP NEBL ENST00000377122 human ensembl 74_37 -1 known missense c.2618 p.A873V 0.999 NULL pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain - no_errors NEBL HGNC ENSG00000078114 119 1 0.833333 108 28 20.5882 C10orf71 0 genome.wustl.edu 37 10 50530877 50530877 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 10 50530877 50530877 C T SNP C10orf71 ENST00000374144 human ensembl 74_37 +1 known missense c.287 p.A96V 0.998 NULL NULL - no_errors C10orf71 HGNC ENSG00000177354 127 0 0 119 25 17.3611 CTNNA3 0 genome.wustl.edu 37 10 69299327 69299327 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 10 69299327 69299327 C T SNP CTNNA3 ENST00000373744 human ensembl 74_37 -1 known silent c.393 p.A131 0.999 pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin - no_errors CTNNA3 HGNC ENSG00000183230 89 0 0 91 17 15.7407 ITIH5 0 genome.wustl.edu 37 10 7684001 7684001 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 10 7684001 7684001 C T SNP ITIH5 ENST00000256861 human ensembl 74_37 -1 known missense c.188 p.R63H 1.000 pfam_VIT,smart_VIT pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A - no_errors ITIH5 HGNC ENSG00000123243 109 0 0 86 22 20.3704 RGR 0 genome.wustl.edu 37 10 86008690 86008690 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 10 86008690 86008690 C T SNP RGR ENST00000372092 human ensembl 74_37 +1 known missense c.211 p.R71W 0.985 NULL NULL - no_errors RGR HGNC ENSG00000148604 82 0 0 96 15 13.5135 TCTN3 0 genome.wustl.edu 37 10 97444352 97444352 + Silent SNP A A T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 10 97444352 97444352 A T SNP TCTN3 ENST00000371217 human ensembl 74_37 -1 known silent c.999 p.T333 0.996 pfam_DUF1619 pfam_DUF1619 - no_errors TCTN3 HGNC ENSG00000119977 71 0 0 40 8 16.6667 HECTD4 0 genome.wustl.edu 37 12 112711519 112711519 + Missense_Mutation SNP G G C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 12 112711519 112711519 G C SNP HECTD4 ENST00000377560 human ensembl 74_37 -1 known missense c.1336 p.Q446E 1.000 NULL pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT - no_errors HECTD4 HGNC ENSG00000173064 135 0 0 90 26 22.4138 SRRM4 0 genome.wustl.edu 37 12 119588837 119588837 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 12 119588837 119588837 G A SNP SRRM4 ENST00000267260 human ensembl 74_37 +1 known silent c.1092 p.P364 0.072 NULL NULL - no_errors SRRM4 HGNC ENSG00000139767 47 0 0 44 6 12 ENSG00000256577 0 genome.wustl.edu 37 12 313901 313901 + RNA SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 12 313901 313901 G A SNP ENSG00000256577 ENST00000539568 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors RP11-283I3.2 Clone_based_vega_gene ENSG00000256577 24 0 0 23 7 23.3333 CPNE8 0 genome.wustl.edu 37 12 39154659 39154659 + Nonsense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 12 39154659 39154659 G A SNP CPNE8 ENST00000331366 human ensembl 74_37 -1 known nonsense c.712 p.R238* 1.000 pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A - no_errors CPNE8 HGNC ENSG00000139117 115 0 0 49 14 22.2222 FMNL3 0 genome.wustl.edu 37 12 50052242 50052242 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 12 50052242 50052242 C T SNP FMNL3 ENST00000293590 human ensembl 74_37 -1 known silent c.588 p.A196 0.999 superfamily_ARM-type_fold pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin - no_errors FMNL3 HGNC ENSG00000161791 52 0 0 43 5 10.4167 ANO2 0 genome.wustl.edu 37 12 5672628 5672628 + Missense_Mutation SNP A A C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 12 5672628 5672628 A C SNP ANO2 ENST00000356134 human ensembl 74_37 -1 known missense c.2837 p.F946C 1.000 NULL pfam_Anoctamin - no_errors ANO2 HGNC ENSG00000047617 49 0 0 43 9 17.3077 WASF3 0 genome.wustl.edu 37 13 27256755 27256755 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 13 27256755 27256755 C T SNP WASF3 ENST00000335327 human ensembl 74_37 +1 known missense c.995 p.A332V 0.962 NULL pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom - no_errors WASF3 HGNC ENSG00000132970 280 0 0 338 64 15.9204 DCLK1 0 genome.wustl.edu 37 13 36410272 36410272 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 13 36410272 36410272 G A SNP DCLK1 ENST00000360631 human ensembl 74_37 -1 known missense c.1127 p.S376L 0.900 superfamily_Kinase-like_dom pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom - no_errors DCLK1 HGNC ENSG00000133083 165 1 0.60241 135 28 17.1779 DZIP1 0 genome.wustl.edu 37 13 96237021 96237021 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 13 96237021 96237021 G A SNP DZIP1 ENST00000347108 human ensembl 74_37 -1 known silent c.2493 p.G831 0.003 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors DZIP1 HGNC ENSG00000134874 124 0 0 101 28 21.7054 SIX4 0 genome.wustl.edu 37 14 61186876 61186876 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 14 61186876 61186876 C T SNP SIX4 ENST00000216513 human ensembl 74_37 -1 known missense c.1151 p.G384E 1.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors SIX4 HGNC ENSG00000100625 83 0 0 46 10 17.8571 ZNF106 0 genome.wustl.edu 37 15 42716889 42716889 + RNA SNP G G C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 15 42716889 42716889 G C SNP ZNF106 ENST00000565660 human ensembl 74_37 -1 known rna NULL NULL 0.026 - - - no_errors ZNF106 HGNC ENSG00000103994 9 0 0 5 5 50 C15orf26 0 genome.wustl.edu 37 15 81428869 81428869 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 15 81428869 81428869 G A SNP C15orf26 ENST00000286732 human ensembl 74_37 +1 known missense c.172 p.V58I 0.000 NULL NULL - no_errors C15orf26 HGNC ENSG00000156206 66 0 0 45 10 18.1818 SNX29 0 genome.wustl.edu 37 16 12293530 12293530 + Silent SNP A A G TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 12293530 12293530 A G SNP SNX29 ENST00000306030 human ensembl 74_37 +1 known silent c.513 p.Q171 0.960 NULL pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox - no_errors SNX29 HGNC ENSG00000048471 22 0 0 18 3 14.2857 PLK1 0 genome.wustl.edu 37 16 23698880 23698880 + Missense_Mutation SNP A A G TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 23698880 23698880 A G SNP PLK1 ENST00000300093 human ensembl 74_37 +1 known missense c.1127 p.D376G 1.000 NULL pfam_Prot_kinase_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom - no_errors PLK1 HGNC ENSG00000166851 153 0 0 126 9 6.66667 LUC7L 0 genome.wustl.edu 37 16 240114 240114 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 240114 240114 C T SNP LUC7L ENST00000293872 human ensembl 74_37 -1 known missense c.827 p.R276H 1.000 NULL pfam_Luc7-rel - no_errors LUC7L HGNC ENSG00000007392 31 0 0 23 7 23.3333 AXIN1 0 genome.wustl.edu 37 16 347940 347940 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 347940 347940 C T SNP AXIN1 ENST00000262320 human ensembl 74_37 -1 known silent c.1566 p.A522 0.000 NULL pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom - no_errors AXIN1 HGNC ENSG00000103126 44 0 0 22 7 24.1379 SALL1 0 genome.wustl.edu 37 16 51174418 51174418 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 51174418 51174418 G A SNP SALL1 ENST00000251020 human ensembl 74_37 -1 known missense c.1715 p.T572M 0.999 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SALL1 HGNC ENSG00000103449 79 0 0 48 13 21.3115 TRADD 0 genome.wustl.edu 37 16 67189149 67189149 + Nonsense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 67189149 67189149 G A SNP TRADD ENST00000345057 human ensembl 74_37 -1 known nonsense c.478 p.R160* 0.001 pfam_TRADD_N,superfamily_TRADD_N pfam_TRADD_N,pfam_Death_domain,superfamily_TRADD_N,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain - no_errors TRADD HGNC ENSG00000102871 20 0 0 13 7 35 PRR25 0 genome.wustl.edu 37 16 855739 855739 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 855739 855739 G A SNP PRR25 ENST00000301698 human ensembl 74_37 +1 known silent c.297 p.P99 0.005 NULL NULL - no_errors PRR25 HGNC ENSG00000167945 47 0 0 40 13 24.5283 TBC1D3 0 genome.wustl.edu 37 17 36340138 36340138 + Silent SNP A A G TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 17 36340138 36340138 A G SNP TBC1D3 ENST00000354664 human ensembl 74_37 -1 known silent c.889 p.L297 0.353 pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D3 HGNC ENSG00000197681 12 0 0 7 5 41.6667 CDC27 0 genome.wustl.edu 37 17 45249321 45249321 + Nonsense_Mutation SNP G G T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 17 45249321 45249321 G T SNP CDC27 ENST00000531206 human ensembl 74_37 -1 known nonsense c.213 p.C71* 1.000 NULL pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors CDC27 HGNC ENSG00000004897 36 0 0 31 3 8.82353 KAT7 0 genome.wustl.edu 37 17 47903390 47903390 + Missense_Mutation SNP A A C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 17 47903390 47903390 A C SNP KAT7 ENST00000259021 human ensembl 74_37 +1 known missense c.1509 p.K503N 1.000 pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase - no_errors KAT7 HGNC ENSG00000136504 120 0 0 78 25 24.2718 TP53 0 genome.wustl.edu 37 17 7577022 7577022 + Nonsense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 17 7577022 7577022 G A SNP TP53 ENST00000269305 human ensembl 74_37 -1 known nonsense c.916 p.R306* 1.000 NULL pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 118 0 0 60 17 22.0779 SLC5A5 0 genome.wustl.edu 37 19 17994560 17994560 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 17994560 17994560 C T SNP SLC5A5 ENST00000222248 human ensembl 74_37 +1 known missense c.1313 p.P438L 0.997 pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr - no_errors SLC5A5 HGNC ENSG00000105641 102 0 0 66 23 25.8427 KIAA1683 0 genome.wustl.edu 37 19 18378091 18378091 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 18378091 18378091 C T SNP KIAA1683 ENST00000392413 human ensembl 74_37 -1 known missense c.259 p.E87K 0.721 NULL pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS - no_errors KIAA1683 HGNC ENSG00000130518 137 0 0 93 32 25.6 ZNF536 0 genome.wustl.edu 37 19 31040026 31040026 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 31040026 31040026 C T SNP ZNF536 ENST00000355537 human ensembl 74_37 +1 known missense c.3500 p.S1167L 0.999 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF536 HGNC ENSG00000198597 99 0 0 92 8 8 GGN 0 genome.wustl.edu 37 19 38876902 38876902 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 38876902 38876902 G A SNP GGN ENST00000334928 human ensembl 74_37 -1 known missense c.1000 p.R334W 0.000 NULL NULL - no_errors GGN HGNC ENSG00000179168 36 0 0 25 6 19.3548 LILRB5 0 genome.wustl.edu 37 19 54754820 54754820 + Missense_Mutation SNP T T G TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 54754820 54754820 T G SNP LILRB5 ENST00000450632 human ensembl 74_37 -1 known missense c.1815 p.L605F 0.000 NULL smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors LILRB5 HGNC ENSG00000105609 59 0 0 55 5 8.33333 INSR 0 genome.wustl.edu 37 19 7132311 7132311 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 7132311 7132311 G A SNP INSR ENST00000302850 human ensembl 74_37 -1 known silent c.2700 p.V900 0.257 pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom - no_errors INSR HGNC ENSG00000171105 38 0 0 39 4 9.30233 OR1M1 0 genome.wustl.edu 37 19 9204290 9204290 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 9204290 9204290 G A SNP OR1M1 ENST00000429566 human ensembl 74_37 +1 known missense c.370 p.V124M 0.985 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR1M1 HGNC ENSG00000170929 127 0 0 112 23 17.037 SCTR 0 genome.wustl.edu 37 2 120236430 120236430 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 2 120236430 120236430 C T SNP SCTR ENST00000019103 human ensembl 74_37 -1 known silent c.258 p.E86 0.987 pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_secretin_rcpt,prints_GPCR_2_VIP_rcpt_1 - no_errors SCTR HGNC ENSG00000080293 77 0 0 60 15 20 STAT4 0 genome.wustl.edu 37 2 191934456 191934456 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 2 191934456 191934456 G A SNP STAT4 ENST00000358470 human ensembl 74_37 -1 known silent c.507 p.D169 0.965 pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2 - no_errors STAT4 HGNC ENSG00000138378 113 0 0 62 13 17.3333 CASP10 0 genome.wustl.edu 37 2 202050848 202050848 + Splice_Site SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 2 202050848 202050848 G A SNP CASP10 ENST00000286186 human ensembl 74_37 +1 known splice_site c.347+1 e1+1 1.000 - - - no_errors CASP10 HGNC ENSG00000003400 37 0 0 16 9 36 SLC30A6 0 genome.wustl.edu 37 2 32422820 32422820 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 2 32422820 32422820 G A SNP SLC30A6 ENST00000282587 human ensembl 74_37 +1 known missense c.590 p.R197Q 1.000 pfam_Cation_efflux,tigrfam_Cation_efflux pfam_Cation_efflux,tigrfam_Cation_efflux - no_errors SLC30A6 HGNC ENSG00000152683 124 0 0 56 11 16.4179 NLRC4 0 genome.wustl.edu 37 2 32475567 32475567 + Missense_Mutation SNP T T C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 2 32475567 32475567 T C SNP NLRC4 ENST00000360906 human ensembl 74_37 -1 known missense c.1366 p.S456G 0.996 NULL pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD - no_errors NLRC4 HGNC ENSG00000091106 105 0 0 73 22 23.1579 NRXN1 0 genome.wustl.edu 37 2 50733718 50733718 + Silent SNP G G C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 2 50733718 50733718 G C SNP NRXN1 ENST00000402717 human ensembl 74_37 -1 known silent c.2388 p.L796 1.000 pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors NRXN1 HGNC ENSG00000179915 37 0 0 24 6 20 BMP10 0 genome.wustl.edu 37 2 69093087 69093087 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 2 69093087 69093087 G A SNP BMP10 ENST00000295379 human ensembl 74_37 -1 known silent c.951 p.N317 0.110 NULL pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu - no_errors BMP10 HGNC ENSG00000163217 69 0 0 51 14 21.5385 KIF16B 0 genome.wustl.edu 37 20 16336990 16336990 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 20 16336990 16336990 G A SNP KIF16B ENST00000354981 human ensembl 74_37 -1 known silent c.3606 p.F1202 1.000 pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox pfam_Kinesin_motor_dom,pfam_Phox,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,superfamily_Phox,smart_Kinesin_motor_dom,smart_Phox,pfscan_Phox,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF16B HGNC ENSG00000089177 66 0 0 38 4 9.52381 XKR7 0 genome.wustl.edu 37 20 30584454 30584454 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 20 30584454 30584454 G A SNP XKR7 ENST00000562532 human ensembl 74_37 +1 known missense c.934 p.A312T 0.998 pfam_Transport_prot_XK pfam_Transport_prot_XK - no_errors XKR7 HGNC ENSG00000260903 68 0 0 75 44 36.9748 MYL9 0 genome.wustl.edu 37 20 35176528 35176528 + Missense_Mutation SNP A A C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 20 35176528 35176528 A C SNP MYL9 ENST00000279022 human ensembl 74_37 +1 known missense c.278 p.K93T 1.000 NULL pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors MYL9 HGNC ENSG00000101335 52 0 0 71 5 6.57895 ZHX3 0 genome.wustl.edu 37 20 39832810 39832810 + Missense_Mutation SNP G G T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 20 39832810 39832810 G T SNP ZHX3 ENST00000309060 human ensembl 74_37 -1 known missense c.747 p.N249K 0.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors ZHX3 HGNC ENSG00000174306 116 0 0 139 22 13.6646 NCOA3 0 genome.wustl.edu 37 20 46266482 46266482 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 20 46266482 46266482 C T SNP NCOA3 ENST00000371998 human ensembl 74_37 +1 known missense c.2467 p.H823Y 1.000 pirsf_Nuclear_rcpt_coactivator pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom - no_errors NCOA3 HGNC ENSG00000124151 155 0 0 111 14 11.2 PAK7 0 genome.wustl.edu 37 20 9561532 9561532 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 20 9561532 9561532 C T SNP PAK7 ENST00000353224 human ensembl 74_37 -1 known missense c.250 p.G84S 1.000 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom - no_errors PAK7 HGNC ENSG00000101349 163 0 0 118 38 24.359 TMPRSS3 0 genome.wustl.edu 37 21 43805630 43805630 + Missense_Mutation SNP C C A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 21 43805630 43805630 C A SNP TMPRSS3 ENST00000380399 human ensembl 74_37 -1 known missense c.712 p.D238Y 0.003 pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR pfam_Peptidase_S1,pfam_SRCR,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors TMPRSS3 HGNC ENSG00000160183 184 0 0 168 39 18.8406 PRAME 0 genome.wustl.edu 37 22 22890846 22890846 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 22 22890846 22890846 C T SNP PRAME ENST00000398741 human ensembl 74_37 -1 known silent c.1173 p.T391 0.068 NULL NULL - no_errors PRAME HGNC ENSG00000185686 102 0 0 106 17 13.8211 PLCXD2 0 genome.wustl.edu 37 3 111432963 111432963 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 3 111432963 111432963 C T SNP PLCXD2 ENST00000477665 human ensembl 74_37 +1 known missense c.854 p.T285M 0.993 superfamily_PLC-like_Pdiesterase_TIM-brl pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom - no_errors PLCXD2 HGNC ENSG00000240891 54 0 0 30 17 36.1702 WNT7A 0 genome.wustl.edu 37 3 13916592 13916592 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 3 13916592 13916592 C T SNP WNT7A ENST00000285018 human ensembl 74_37 -1 known silent c.150 p.A50 0.925 pfam_Wnt,smart_Wnt pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7 - no_errors WNT7A HGNC ENSG00000154764 63 0 0 60 22 26.8293 PLCH1 0 genome.wustl.edu 37 3 155198891 155198891 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 3 155198891 155198891 G A SNP PLCH1 ENST00000340059 human ensembl 74_37 -1 known missense c.4948 p.R1650W 1.000 NULL pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C - no_errors PLCH1 HGNC ENSG00000114805 64 0 0 53 13 19.697 SLC26A6 0 genome.wustl.edu 37 3 48664446 48664446 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 3 48664446 48664446 C T SNP SLC26A6 ENST00000395550 human ensembl 74_37 -1 known missense c.1936 p.G646S 0.002 pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt - no_errors SLC26A6 HGNC ENSG00000225697 206 0 0 139 31 18.2353 DUSP7 0 genome.wustl.edu 37 3 52090146 52090146 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 3 52090146 52090146 C T SNP DUSP7 ENST00000296483 human ensembl 74_37 -1 known silent c.84 p.P28 0.927 pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat - no_errors DUSP7 HGNC ENSG00000164086 16 0 0 18 2 10 CCDC66 0 genome.wustl.edu 37 3 56597954 56597954 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 3 56597954 56597954 C T SNP CCDC66 ENST00000394672 human ensembl 74_37 +1 known silent c.345 p.T115 0.000 NULL NULL - no_errors CCDC66 HGNC ENSG00000180376 53 0 0 33 4 10.8108 ROBO1 0 genome.wustl.edu 37 3 78763664 78763664 + Nonsense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 3 78763664 78763664 G A SNP ROBO1 ENST00000464233 human ensembl 74_37 -1 known nonsense c.928 p.R310* 1.000 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors ROBO1 HGNC ENSG00000169855 38 0 0 27 9 25 C4orf33 0 genome.wustl.edu 37 4 130030644 130030644 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 4 130030644 130030644 C T SNP C4orf33 ENST00000281146 human ensembl 74_37 +1 known missense c.311 p.S104L 0.793 NULL NULL - no_errors C4orf33 HGNC ENSG00000151470 61 0 0 37 4 9.7561 GPM6A 0 genome.wustl.edu 37 4 176555966 176555966 + RNA SNP T T A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 4 176555966 176555966 T A SNP GPM6A ENST00000506219 human ensembl 74_37 -1 known rna NULL NULL 0.992 - - - no_errors GPM6A HGNC ENSG00000150625 23 0 0 18 8 30.7692 KLF3 0 genome.wustl.edu 37 4 38690545 38690545 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 4 38690545 38690545 C T SNP KLF3 ENST00000261438 human ensembl 74_37 +1 known missense c.397 p.R133W 0.286 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors KLF3 HGNC ENSG00000109787 95 0 0 67 22 24.7191 TMEM150C 0 genome.wustl.edu 37 4 83406787 83406787 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 4 83406787 83406787 G A SNP TMEM150C ENST00000449862 human ensembl 74_37 -1 known silent c.627 p.G209 1.000 pfam_Frag1/DRAM/Sfk1 pfam_Frag1/DRAM/Sfk1 - no_errors TMEM150C HGNC ENSG00000249242 17 0 0 12 5 29.4118 HELQ 0 genome.wustl.edu 37 4 84376457 84376457 + RNA SNP A A C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 4 84376457 84376457 A C SNP HELQ ENST00000440639 human ensembl 74_37 -1 putative rna NULL NULL 0.001 - - - no_errors HELQ HGNC ENSG00000163312 49 0 0 32 9 21.9512 IRF1 0 genome.wustl.edu 37 5 131822699 131822699 + Nonsense_Mutation SNP G G T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 5 131822699 131822699 G T SNP IRF1 ENST00000245414 human ensembl 74_37 -1 known nonsense c.311 p.S104* 0.996 pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2 pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom - no_errors IRF1 HGNC ENSG00000125347 427 1 0.233645 351 20 5.39084 FSTL4 0 genome.wustl.edu 37 5 132545910 132545910 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 5 132545910 132545910 G A SNP FSTL4 ENST00000265342 human ensembl 74_37 -1 known silent c.1689 p.D563 0.293 NULL pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal_dom,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom - no_errors FSTL4 HGNC ENSG00000053108 67 0 0 40 6 13.0435 GRIA1 0 genome.wustl.edu 37 5 153085359 153085359 + Nonsense_Mutation SNP A A T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 5 153085359 153085359 A T SNP GRIA1 ENST00000448073 human ensembl 74_37 +1 known nonsense c.1585 p.K529* 1.000 pfam_SBP_bac_3,smart_Iontro_glu_rcpt pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIA1 HGNC ENSG00000155511 148 0 0 74 24 24.4898 RFPL4B 0 genome.wustl.edu 37 6 112671190 112671190 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 6 112671190 112671190 C T SNP RFPL4B ENST00000441065 human ensembl 74_37 +1 known missense c.280 p.R94W 0.000 superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin - no_errors RFPL4B HGNC ENSG00000251258 66 0 0 51 13 20.3125 HEY2 0 genome.wustl.edu 37 6 126080849 126080849 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 6 126080849 126080849 G A SNP HEY2 ENST00000368364 human ensembl 74_37 +1 known silent c.915 p.P305 0.025 NULL pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom,prints_Antifreeze_1 - no_errors HEY2 HGNC ENSG00000135547 170 0 0 126 46 26.7442 MOXD1 0 genome.wustl.edu 37 6 132649655 132649655 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 6 132649655 132649655 C T SNP MOXD1 ENST00000367963 human ensembl 74_37 -1 known missense c.742 p.D248N 0.997 pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase - no_errors MOXD1 HGNC ENSG00000079931 75 0 0 45 16 26.2295 PHACTR2 0 genome.wustl.edu 37 6 144086652 144086652 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 6 144086652 144086652 G A SNP PHACTR2 ENST00000440869 human ensembl 74_37 +1 known missense c.949 p.E317K 0.095 NULL pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat - no_errors PHACTR2 HGNC ENSG00000112419 65 0 0 62 15 19.4805 CFB 0 genome.wustl.edu 37 6 31901495 31901495 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 6 31901495 31901495 C T SNP CFB ENST00000556679 human ensembl 74_37 +1 known missense c.365 p.T122M 0.378 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,pfscan_Sushi_SCR_CCP pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors CFB HGNC ENSG00000243649 101 0 0 67 24 26.3736 TNXB 0 genome.wustl.edu 37 6 32017048 32017048 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 6 32017048 32017048 C T SNP TNXB ENST00000375247 human ensembl 74_37 -1 known silent c.9750 p.T3250 0.632 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3 - no_errors TNXB HGNC ENSG00000168477 29 0 0 20 5 20 NCR2 0 genome.wustl.edu 37 6 41309565 41309565 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 6 41309565 41309565 G A SNP NCR2 ENST00000373089 human ensembl 74_37 +1 known missense c.428 p.R143H 0.000 NULL pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom - no_errors NCR2 HGNC ENSG00000096264 93 0 0 68 25 26.8817 CAV1 0 genome.wustl.edu 37 7 116199088 116199088 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 7 116199088 116199088 C T SNP CAV1 ENST00000341049 human ensembl 74_37 +1 known missense c.284 p.T95M 1.000 pfam_Caveolin pfam_Caveolin - no_errors CAV1 HGNC ENSG00000105974 48 0 0 26 23 46.9388 ENSG00000229533 0 genome.wustl.edu 37 7 19184993 19184993 + RNA SNP G G T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 7 19184993 19184993 G T SNP ENSG00000229533 ENST00000452700 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors AC003986.5 Clone_based_vega_gene ENSG00000229533 37 0 0 35 9 20.4545 FIGNL1 0 genome.wustl.edu 37 7 50514267 50514267 + Missense_Mutation SNP A A T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 7 50514267 50514267 A T SNP FIGNL1 ENST00000356889 human ensembl 74_37 -1 known missense c.719 p.V240E 0.746 NULL pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors FIGNL1 HGNC ENSG00000132436 131 0 0 65 43 39.8148 LMTK2 0 genome.wustl.edu 37 7 97823365 97823365 + Silent SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 7 97823365 97823365 C T SNP LMTK2 ENST00000297293 human ensembl 74_37 +1 known silent c.3588 p.D1196 0.000 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors LMTK2 HGNC ENSG00000164715 94 0 0 76 11 12.6437 CSMD3 0 genome.wustl.edu 37 8 113569062 113569062 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 8 113569062 113569062 G A SNP CSMD3 ENST00000297405 human ensembl 74_37 -1 known silent c.4164 p.H1388 1.000 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP - no_errors CSMD3 HGNC ENSG00000164796 90 0 0 77 5 6.09756 TRPA1 0 genome.wustl.edu 37 8 72970030 72970030 + Missense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 8 72970030 72970030 C T SNP TRPA1 ENST00000262209 human ensembl 74_37 -1 known missense c.1015 p.D339N 0.994 superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors TRPA1 HGNC ENSG00000104321 76 0 0 45 13 22.4138 RALYL 0 genome.wustl.edu 37 8 85774574 85774574 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 8 85774574 85774574 G A SNP RALYL ENST00000521268 human ensembl 74_37 +1 known missense c.457 p.V153I 0.537 pirsf_hnRNP_C_Raly pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom - no_errors RALYL HGNC ENSG00000184672 31 0 0 29 4 12.1212 FOXE1 0 genome.wustl.edu 37 9 100616580 100616580 + Silent SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 9 100616580 100616580 G A SNP FOXE1 ENST00000375123 human ensembl 74_37 +1 known silent c.384 p.A128 0.999 pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXE1 HGNC ENSG00000178919 54 0 0 46 48 51.0638 OLFM1 0 genome.wustl.edu 37 9 138011806 138011806 + Missense_Mutation SNP G G A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 9 138011806 138011806 G A SNP OLFM1 ENST00000371793 human ensembl 74_37 +1 known missense c.1240 p.V414I 1.000 pfam_Olfac-like,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like - no_errors OLFM1 HGNC ENSG00000130558 115 0 0 74 51 40.8 KIAA1210 0 genome.wustl.edu 37 X 118219449 118219449 + Missense_Mutation SNP G G T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 X 118219449 118219449 G T SNP KIAA1210 ENST00000402510 human ensembl 74_37 -1 known missense c.4745 p.A1582E 0.000 NULL NULL - no_errors KIAA1210 HGNC ENSG00000250423 58 0 0 13 15 53.5714 USP11 0 genome.wustl.edu 37 X 47107237 47107237 + Nonsense_Mutation SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 X 47107237 47107237 C T SNP USP11 ENST00000218348 human ensembl 74_37 +1 known nonsense c.2800 p.R934* 0.015 NULL pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67 - no_errors USP11 HGNC ENSG00000102226 40 0 0 36 2 5.26316 ZNF41 0 genome.wustl.edu 37 X 47308224 47308224 + Missense_Mutation SNP A A C TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 X 47308224 47308224 A C SNP ZNF41 ENST00000397050 human ensembl 74_37 -1 known missense c.975 p.D325E 0.000 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF41 HGNC ENSG00000147124 88 0 0 46 5 9.80392 XIST 0 genome.wustl.edu 37 X 73069809 73069809 + RNA SNP C C T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 X 73069809 73069809 C T SNP XIST ENST00000429829 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors XIST HGNC ENSG00000229807 24 0 0 8 13 61.9048 CD34 0 genome.wustl.edu 37 1 208063101 208063101 + Frame_Shift_Del DEL A A - TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 1 208063101 208063101 A - DEL CD34 ENST00000367036 human ensembl 74_37 -1 known frame_shift_del c.82 p.S28fs 0.000 NULL pfam_CD34/Podocalyxin,prints_CD34 - no_errors CD34 HGNC ENSG00000174059 25 0 0 19 2 9.52381 MMP12 0 genome.wustl.edu 37 11 102738795 102738796 + Splice_Site INS - - T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 11 102738795 102738796 - T INS MMP12 ENST00000326227 human ensembl 74_37 -1 known splice_site_ins c.NULL NULL 0.978:0.973 - - - no_errors MMP12 HGNC ENSG00000110347 19 0 0 5 4 44.4444 PHKB 0 genome.wustl.edu 37 16 47694577 47694578 + Frame_Shift_Ins INS - - T TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 16 47694577 47694578 - T INS PHKB ENST00000299167 human ensembl 74_37 +1 known frame_shift_ins c.2043_2044 p.K682fs 1.000:1.000 pfam_Glyco_hydro_15 pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like - no_errors PHKB HGNC ENSG00000102893 99 0 0 61 13 17.5676 KRTAP4-12 0 genome.wustl.edu 37 17 39280351 39280352 + Frame_Shift_Del DEL AG AG - TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 AG AG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 17 39280351 39280352 AG - DEL KRTAP4-12 ENST00000394014 human ensembl 74_37 -1 known frame_shift_del c.24_23 p.S8fs 0.004:0.804 NULL pfam_Keratin-assoc - no_errors KRTAP4-12 HGNC ENSG00000213416 159 0 0 180 21 10.4478 UNK 0 genome.wustl.edu 37 17 73819366 73819367 + Frame_Shift_Del DEL AG AG - TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 AG AG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 17 73819366 73819367 AG - DEL UNK ENST00000293218 human ensembl 74_37 +1 known frame_shift_del c.2268_2269 p.E757fs 0.964:1.000 NULL pfam_Znf_CCCH,smart_Znf_CCCH - no_errors UNK HGNC ENSG00000132478 71 0 0 62 11 15.0685 ZNF569 0 genome.wustl.edu 37 19 37905170 37905171 + Frame_Shift_Ins INS - - A TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 19 37905170 37905171 - A INS ZNF569 ENST00000316950 human ensembl 74_37 -1 known frame_shift_ins c.390_389 p.S132fs 0.000:0.001 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF569 HGNC ENSG00000196437 107 0 0 50 11 18.0328 SEL1L3 0 genome.wustl.edu 37 4 25780725 25780725 + Frame_Shift_Del DEL A A - TCGA-BR-8682-01A-11D-2394-08 TCGA-BR-8682-10A-01D-2394-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ea2055d1-7b8b-4aaf-9a70-8802f4deef9b e959d24d-aab8-4a7e-a29c-5e2370ddcad8 4 25780725 25780725 A - DEL SEL1L3 ENST00000399878 human ensembl 74_37 -1 known frame_shift_del c.2558 p.F853fs 0.998 pfam_Sel1-like,smart_Sel1-like pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like - no_errors SEL1L3 HGNC ENSG00000091490 130 0 0 61 20 24.6914