Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF C1orf43 0 genome.wustl.edu 37 1 154179817 154179817 + RNA SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 154179817 154179817 G A SNP C1orf43 ENST00000483282 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors C1orf43 HGNC ENSG00000143612 55 0 0 23 6 20.6897 DCST2 0 genome.wustl.edu 37 1 155002981 155002981 + Missense_Mutation SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 155002981 155002981 G T SNP DCST2 ENST00000368424 human ensembl 74_37 -1 known missense c.946 p.L316M 0.997 NULL pfam_DC_STAMP-like - no_errors DCST2 HGNC ENSG00000163354 82 0 0 31 18 36.7347 WDR26 0 genome.wustl.edu 37 1 224606064 224606064 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 224606064 224606064 C T SNP WDR26 ENST00000414423 human ensembl 74_37 -1 known missense c.917 p.R306Q 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR26 HGNC ENSG00000162923 119 0 0 42 32 43.2432 AGT 0 genome.wustl.edu 37 1 230839016 230839016 + Silent SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 230839016 230839016 G T SNP AGT ENST00000366667 human ensembl 74_37 -1 known silent c.1329 p.T443 0.001 pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Angiotensinogen - no_errors AGT HGNC ENSG00000135744 221 0 0 81 34 29.5652 OPRD1 0 genome.wustl.edu 37 1 29185501 29185501 + Missense_Mutation SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 29185501 29185501 T C SNP OPRD1 ENST00000234961 human ensembl 74_37 +1 known missense c.263 p.I88T 1.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_NPY_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt - no_errors OPRD1 HGNC ENSG00000116329 200 1 0.497512 85 23 21.2963 AGO3 0 genome.wustl.edu 37 1 36520681 36520681 + Silent SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 36520681 36520681 A C SNP AGO3 ENST00000373191 human ensembl 74_37 +1 known silent c.2409 p.P803 1.000 pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi - no_errors AGO3 HGNC ENSG00000126070 44 0 0 44 6 12 DMRTB1 0 genome.wustl.edu 37 1 53925618 53925618 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 53925618 53925618 G A SNP DMRTB1 ENST00000371445 human ensembl 74_37 +1 known silent c.492 p.A164 0.003 NULL pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd - no_errors DMRTB1 HGNC ENSG00000143006 24 0 0 7 4 36.3636 TAS1R1 0 genome.wustl.edu 37 1 6631130 6631130 + Missense_Mutation SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 6631130 6631130 T C SNP TAS1R1 ENST00000333172 human ensembl 74_37 +1 known missense c.353 p.V118A 0.019 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3 - no_errors TAS1R1 HGNC ENSG00000173662 303 0 0 128 35 21.4724 KCNK18 0 genome.wustl.edu 37 10 118969314 118969314 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 10 118969314 118969314 G A SNP KCNK18 ENST00000334549 human ensembl 74_37 +1 known missense c.659 p.R220H 0.047 NULL pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl - no_errors KCNK18 HGNC ENSG00000186795 173 0 0 70 15 17.6471 EIF3A 0 genome.wustl.edu 37 10 120802173 120802173 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 10 120802173 120802173 G A SNP EIF3A ENST00000369144 human ensembl 74_37 -1 known silent c.2859 p.D953 0.876 NULL pfam_PCI_dom,smart_PCI_dom - no_errors EIF3A HGNC ENSG00000107581 373 0 0 114 67 37.0166 MYO3A 0 genome.wustl.edu 37 10 26457674 26457674 + Missense_Mutation SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 10 26457674 26457674 A C SNP MYO3A ENST00000265944 human ensembl 74_37 +1 known missense c.3145 p.N1049H 1.000 superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom - no_errors MYO3A HGNC ENSG00000095777 93 0 0 25 5 16.6667 LRRC37A6P 0 genome.wustl.edu 37 10 27540714 27540714 + RNA SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 10 27540714 27540714 A G SNP LRRC37A6P ENST00000574795 human ensembl 74_37 -1 known rna NULL NULL 0.001 - - - no_errors LRRC37A6P HGNC ENSG00000230445 38 0 0 17 5 22.7273 SLC18A3 0 genome.wustl.edu 37 10 50819913 50819913 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 10 50819913 50819913 C T SNP SLC18A3 ENST00000374115 human ensembl 74_37 +1 known missense c.1127 p.A376V 1.000 pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC18A3 HGNC ENSG00000187714 98 0 0 41 26 38.806 ZWINT 0 genome.wustl.edu 37 10 58119237 58119237 + Missense_Mutation SNP C C G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 10 58119237 58119237 C G SNP ZWINT ENST00000373944 human ensembl 74_37 -1 known missense c.480 p.Q160H 1.000 NULL NULL - no_errors ZWINT HGNC ENSG00000122952 130 0 0 43 6 12.2449 ZWINT 0 genome.wustl.edu 37 10 58119261 58119261 + Silent SNP G G C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 10 58119261 58119261 G C SNP ZWINT ENST00000373944 human ensembl 74_37 -1 known silent c.456 p.V152 0.861 NULL NULL - no_errors ZWINT HGNC ENSG00000122952 139 0 0 51 5 8.92857 MRGPRX4 0 genome.wustl.edu 37 11 18194815 18194815 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 18194815 18194815 C T SNP MRGPRX4 ENST00000314254 human ensembl 74_37 +1 known silent c.12 p.T4 0.000 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors MRGPRX4 HGNC ENSG00000179817 337 0 0 117 21 15.2174 OR8H3 0 genome.wustl.edu 37 11 55890770 55890770 + Silent SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 55890770 55890770 A C SNP OR8H3 ENST00000313472 human ensembl 74_37 +1 known silent c.922 p.R308 0.000 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR8H3 HGNC ENSG00000181761 191 0 0 42 15 26.3158 OR8J1 0 genome.wustl.edu 37 11 56128326 56128326 + Missense_Mutation SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 56128326 56128326 T C SNP OR8J1 ENST00000303039 human ensembl 74_37 +1 known missense c.604 p.S202P 0.375 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR8J1 HGNC ENSG00000172487 87 0 0 23 9 28.125 OR56B1 0 genome.wustl.edu 37 11 5758675 5758675 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 5758675 5758675 C T SNP OR56B1 ENST00000317121 human ensembl 74_37 +1 known missense c.929 p.A310V 0.005 pfam_7TM_GPCR_olfarory/Srsx pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM - no_errors OR56B1 HGNC ENSG00000181023 336 1 0.296736 107 87 44.8454 TMEM258 0 genome.wustl.edu 37 11 61557967 61557967 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 61557967 61557967 G A SNP TMEM258 ENST00000257262 human ensembl 74_37 -1 known silent c.111 p.F37 1.000 pfam_UPF0197 pfam_UPF0197 - no_errors TMEM258 HGNC ENSG00000134825 59 0 0 13 4 23.5294 SLC22A10 0 genome.wustl.edu 37 11 63066406 63066406 + Missense_Mutation SNP C C G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 63066406 63066406 C G SNP SLC22A10 ENST00000332793 human ensembl 74_37 +1 known missense c.845 p.S282C 0.998 pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC22A10 HGNC ENSG00000184999 124 0 0 62 5 7.46269 CABP4 0 genome.wustl.edu 37 11 67225880 67225880 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 67225880 67225880 G A SNP CABP4 ENST00000325656 human ensembl 74_37 +1 known silent c.690 p.E230 1.000 pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors CABP4 HGNC ENSG00000175544 228 0 0 70 8 10.2564 AQP11 0 genome.wustl.edu 37 11 77314623 77314623 + Silent SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 77314623 77314623 A C SNP AQP11 ENST00000313578 human ensembl 74_37 +1 known silent c.642 p.V214 0.542 pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_MIP pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_11,prints_MIP - no_errors AQP11 HGNC ENSG00000178301 253 0 0 74 33 30.8411 UTP20 0 genome.wustl.edu 37 12 101759386 101759386 + Silent SNP G G C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 12 101759386 101759386 G C SNP UTP20 ENST00000261637 human ensembl 74_37 +1 known silent c.6108 p.L2036 0.999 superfamily_ARM-type_fold pfam_DRIM,superfamily_ARM-type_fold - no_errors UTP20 HGNC ENSG00000120800 45 0 0 16 3 15.7895 GPRC5A 0 genome.wustl.edu 37 12 13061831 13061831 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 12 13061831 13061831 G A SNP GPRC5A ENST00000014914 human ensembl 74_37 +1 known silent c.648 p.T216 0.002 pfam_GPCR_3_C pfam_GPCR_3_C - no_errors GPRC5A HGNC ENSG00000013588 286 0 0 94 68 41.9753 CAPRIN2 0 genome.wustl.edu 37 12 30872159 30872159 + Missense_Mutation SNP C C A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 12 30872159 30872159 C A SNP CAPRIN2 ENST00000251071 human ensembl 74_37 -1 known missense c.2149 p.A717S 1.000 pfam_Caprin-1_C pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q - no_errors CAPRIN2 HGNC ENSG00000110888 187 0 0 75 21 21.875 SHMT2 0 genome.wustl.edu 37 12 57628067 57628067 + Nonsense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 12 57628067 57628067 C T SNP SHMT2 ENST00000328923 human ensembl 74_37 +1 known nonsense c.1438 p.Q480* 0.845 superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase - no_errors SHMT2 HGNC ENSG00000182199 308 1 0.323625 98 53 35.0993 ALOX5AP 0 genome.wustl.edu 37 13 31338224 31338224 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 13 31338224 31338224 C T SNP ALOX5AP ENST00000380490 human ensembl 74_37 +1 known missense c.467 p.P156L 1.000 NULL pfam_Membr-assoc_MAPEG,prints_5_LipOase_AP - no_errors ALOX5AP HGNC ENSG00000132965 140 0 0 67 46 40.708 AHNAK2 0 genome.wustl.edu 37 14 105418917 105418917 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 14 105418917 105418917 G A SNP AHNAK2 ENST00000333244 human ensembl 74_37 -1 known silent c.2871 p.G957 0.000 NULL superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors AHNAK2 HGNC ENSG00000185567 519 0 0 103 117 53.1818 HSPA2 0 genome.wustl.edu 37 14 65009426 65009426 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 14 65009426 65009426 G A SNP HSPA2 ENST00000247207 human ensembl 74_37 +1 known missense c.1859 p.G620D 0.754 NULL pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam - no_errors HSPA2 HGNC ENSG00000126803 57 0 0 9 17 65.3846 HEATR4 0 genome.wustl.edu 37 14 73989212 73989212 + Silent SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 14 73989212 73989212 G T SNP HEATR4 ENST00000334988 human ensembl 74_37 -1 known silent c.645 p.A215 0.863 NULL pfam_HEAT,superfamily_ARM-type_fold - no_errors HEATR4 HGNC ENSG00000187105 61 0 0 27 9 25 SNORD115-15 0 genome.wustl.edu 37 15 25442727 25442727 + RNA SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 15 25442727 25442727 C T SNP SNORD115-15 ENST00000364809 human ensembl 74_37 +1 known rna NULL NULL 0.001 - - - no_errors SNORD115-15 HGNC ENSG00000201679 582 1 0.171527 172 56 24.5614 PIAS1 0 genome.wustl.edu 37 15 68445992 68445992 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 15 68445992 68445992 G A SNP PIAS1 ENST00000249636 human ensembl 74_37 +1 known missense c.893 p.R298Q 1.000 NULL pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom - no_errors PIAS1 HGNC ENSG00000033800 65 0 0 5 3 37.5 PTX4 0 genome.wustl.edu 37 16 1538406 1538406 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 16 1538406 1538406 G A SNP PTX4 ENST00000293922 human ensembl 74_37 -1 known silent c.63 p.P21 0.000 NULL pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin - no_errors PTX4 HGNC ENSG00000251692 157 0 0 61 5 7.57576 RRN3P2 0 genome.wustl.edu 37 16 29110438 29110438 + RNA SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 16 29110438 29110438 T C SNP RRN3P2 ENST00000427965 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors RRN3P2 HGNC ENSG00000103472 60 0 0 30 3 9.09091 NAA60 0 genome.wustl.edu 37 16 3534809 3534809 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 16 3534809 3534809 C T SNP NAA60 ENST00000407558 human ensembl 74_37 +1 known missense c.683 p.S228L 1.000 NULL pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom - no_errors NAA60 HGNC ENSG00000122390 18 0 0 6 3 33.3333 GSE1 0 genome.wustl.edu 37 16 85695249 85695249 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 16 85695249 85695249 G A SNP GSE1 ENST00000253458 human ensembl 74_37 +1 known missense c.2138 p.R713Q 0.512 NULL pfam_GSE-like - no_errors GSE1 HGNC ENSG00000131149 60 0 0 10 3 23.0769 ZCCHC14 0 genome.wustl.edu 37 16 87525317 87525317 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 16 87525317 87525317 G A SNP ZCCHC14 ENST00000268616 human ensembl 74_37 -1 known silent c.117 p.P39 0.985 NULL pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC - no_errors ZCCHC14 HGNC ENSG00000140948 23 0 0 2 4 66.6667 ABAT 0 genome.wustl.edu 37 16 8858686 8858686 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 16 8858686 8858686 G A SNP ABAT ENST00000268251 human ensembl 74_37 +1 known missense c.539 p.R180Q 1.000 pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk - no_errors ABAT HGNC ENSG00000183044 90 0 0 23 23 50 WDR81 0 genome.wustl.edu 37 17 1640709 1640709 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 17 1640709 1640709 C T SNP WDR81 ENST00000409644 human ensembl 74_37 +1 known silent c.5556 p.T1852 0.621 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR81 HGNC ENSG00000167716 95 0 0 37 4 9.7561 RECQL5 0 genome.wustl.edu 37 17 73625286 73625286 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 17 73625286 73625286 G A SNP RECQL5 ENST00000317905 human ensembl 74_37 -1 known silent c.2217 p.S739 0.000 pfam_RecQ_helicase-like_5 pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ - no_errors RECQL5 HGNC ENSG00000108469 65 0 0 31 3 8.82353 TP53 0 genome.wustl.edu 37 17 7578529 7578529 + Missense_Mutation SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 17 7578529 7578529 A C SNP TP53 ENST00000269305 human ensembl 74_37 -1 known missense c.401 p.F134C 1.000 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 77 0 0 26 12 31.5789 SYNGR2 0 genome.wustl.edu 37 17 76167103 76167103 + Missense_Mutation SNP A A T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 17 76167103 76167103 A T SNP SYNGR2 ENST00000225777 human ensembl 74_37 +1 known missense c.305 p.K102M 1.000 pfam_Marvel,pirsf_Synaptogyrin pfam_Marvel,pirsf_Synaptogyrin - no_errors SYNGR2 HGNC ENSG00000108639 100 0 0 47 13 21.6667 SLC14A2 0 genome.wustl.edu 37 18 43248324 43248324 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 18 43248324 43248324 G A SNP SLC14A2 ENST00000255226 human ensembl 74_37 +1 known missense c.1918 p.A640T 1.000 pfam_Urea_transporter pfam_Urea_transporter - no_errors SLC14A2 HGNC ENSG00000132874 84 0 0 49 16 24.6154 LAMA1 0 genome.wustl.edu 37 18 7037694 7037694 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 18 7037694 7037694 C T SNP LAMA1 ENST00000389658 human ensembl 74_37 -1 known silent c.1620 p.P540 0.002 pfscan_Laminin_B_type_IV pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N - no_errors LAMA1 HGNC ENSG00000101680 122 1 0.813008 34 27 44.2623 RGL3 0 genome.wustl.edu 37 19 11526765 11526765 + Missense_Mutation SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 11526765 11526765 G T SNP RGL3 ENST00000393423 human ensembl 74_37 -1 known missense c.485 p.P162H 0.960 pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N - no_errors RGL3 HGNC ENSG00000205517 95 0 0 40 6 13.0435 BRD4 0 genome.wustl.edu 37 19 15353741 15353741 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 15353741 15353741 G A SNP BRD4 ENST00000263377 human ensembl 74_37 -1 known missense c.3139 p.R1047W 1.000 NULL pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain - no_errors BRD4 HGNC ENSG00000141867 29 0 0 8 4 33.3333 IFI30 0 genome.wustl.edu 37 19 18285919 18285919 + Missense_Mutation SNP T T A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 18285919 18285919 T A SNP IFI30 ENST00000407280 human ensembl 74_37 +1 known missense c.202 p.Y68N 1.000 pfam_Interferon-induced_GILT pfam_Interferon-induced_GILT - no_errors IFI30 HGNC ENSG00000216490 78 0 0 66 6 8.33333 PDE4C 0 genome.wustl.edu 37 19 18329839 18329839 + Missense_Mutation SNP C C A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 18329839 18329839 C A SNP PDE4C ENST00000355502 human ensembl 74_37 -1 known missense c.976 p.D326Y 1.000 NULL pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE4C HGNC ENSG00000105650 103 0 0 63 25 28.4091 KMT2B 0 genome.wustl.edu 37 19 36218478 36218478 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 36218478 36218478 C T SNP KMT2B ENST00000222270 human ensembl 74_37 +1 known silent c.4257 p.G1419 0.996 pirsf_MeTrfase_trithorax,superfamily_Bromodomain pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC - no_errors KMT2B Uniprot_gn ENSG00000272333 102 0 0 38 6 13.6364 KLC3 0 genome.wustl.edu 37 19 45852836 45852836 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 45852836 45852836 C T SNP KLC3 ENST00000470402 human ensembl 74_37 +1 known silent c.1161 p.N387 0.959 pfscan_TPR-contain_dom,prints_Kinesin_light pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light - no_errors KLC3 HGNC ENSG00000104892 108 0 0 35 10 22.2222 CD33 0 genome.wustl.edu 37 19 51742771 51742771 + Splice_Site SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 51742771 51742771 A C SNP CD33 ENST00000262262 human ensembl 74_37 +1 known splice_site c.925-2 e7-2 0.008 - - - no_errors CD33 HGNC ENSG00000105383 72 0 0 28 5 15.1515 ZNF560 0 genome.wustl.edu 37 19 9577900 9577900 + Missense_Mutation SNP T T G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 19 9577900 9577900 T G SNP ZNF560 ENST00000301480 human ensembl 74_37 -1 known missense c.1723 p.M575L 0.018 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF560 HGNC ENSG00000198028 195 0 0 37 68 64.7619 SCN9A 0 genome.wustl.edu 37 2 167134663 167134663 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 2 167134663 167134663 C T SNP SCN9A ENST00000303354 human ensembl 74_37 -1 known missense c.2507 p.R836Q 1.000 pfam_Ion_trans_dom pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2 - no_errors SCN9A HGNC ENSG00000169432 133 0 0 37 6 13.9535 ICA1L 0 genome.wustl.edu 37 2 203680659 203680659 + Missense_Mutation SNP T T G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 2 203680659 203680659 T G SNP ICA1L ENST00000358299 human ensembl 74_37 -1 known missense c.758 p.H253P 0.182 NULL pfam_Islet_autoAg_Ica1_C,pfam_AH_dom,pfscan_AH_dom - no_errors ICA1L HGNC ENSG00000163596 155 0 0 49 9 15.5172 AQP12B 0 genome.wustl.edu 37 2 241621908 241621908 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 2 241621908 241621908 G A SNP AQP12B ENST00000407834 human ensembl 74_37 -1 known missense c.347 p.A116V 0.031 pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12 pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP - no_errors AQP12B HGNC ENSG00000185176 58 0 0 35 2 5.40541 KIF3C 0 genome.wustl.edu 37 2 26203307 26203307 + Missense_Mutation SNP C C G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 2 26203307 26203307 C G SNP KIF3C ENST00000264712 human ensembl 74_37 -1 known missense c.1480 p.E494Q 1.000 NULL pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF3C HGNC ENSG00000084731 123 0 0 53 7 11.6667 HEATR5B 0 genome.wustl.edu 37 2 37296009 37296009 + Missense_Mutation SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 2 37296009 37296009 A C SNP HEATR5B ENST00000233099 human ensembl 74_37 -1 known missense c.992 p.L331R 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors HEATR5B HGNC ENSG00000008869 74 0 0 79 34 30.0885 TMEM178A 0 genome.wustl.edu 37 2 39893487 39893487 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 2 39893487 39893487 C T SNP TMEM178A ENST00000281961 human ensembl 74_37 +1 known missense c.373 p.R125W 1.000 NULL NULL - no_errors TMEM178A HGNC ENSG00000152154 18 0 0 3 2 40 PNPT1 0 genome.wustl.edu 37 2 55872550 55872550 + Silent SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 2 55872550 55872550 A G SNP PNPT1 ENST00000415374 human ensembl 74_37 -1 known silent c.1756 p.L586 0.895 superfamily_ExoRNase_PH_dom2,pirsf_PNPase,tigrfam_PNPase pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase - no_errors PNPT1 HGNC ENSG00000138035 77 0 0 27 16 37.2093 FASTKD5 0 genome.wustl.edu 37 20 3129655 3129655 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 20 3129655 3129655 G A SNP FASTKD5 ENST00000380266 human ensembl 74_37 -1 known missense c.62 p.A21V 0.045 NULL pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP - no_errors FASTKD5 HGNC ENSG00000215251 150 0 0 66 36 35.2941 PTPRT 0 genome.wustl.edu 37 20 40710603 40710603 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 20 40710603 40710603 C T SNP PTPRT ENST00000373198 human ensembl 74_37 -1 known missense c.4248 p.M1416I 1.000 pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom - no_errors PTPRT HGNC ENSG00000196090 141 0 0 90 22 19.6429 KRTAP10-2 0 genome.wustl.edu 37 21 45971299 45971299 + Missense_Mutation SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 21 45971299 45971299 T C SNP KRTAP10-2 ENST00000391621 human ensembl 74_37 -1 known missense c.43 p.N15D 0.198 NULL NULL - no_errors KRTAP10-2 HGNC ENSG00000205445 305 0 0 90 5 5.26316 TUBA3FP 0 genome.wustl.edu 37 22 21363306 21363306 + RNA SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 22 21363306 21363306 G A SNP TUBA3FP ENST00000292748 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors TUBA3FP HGNC ENSG00000161149 141 0 0 59 4 6.34921 RAB36 0 genome.wustl.edu 37 22 23503113 23503113 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 22 23503113 23503113 G A SNP RAB36 ENST00000263116 human ensembl 74_37 +1 known missense c.865 p.E289K 1.000 superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors RAB36 HGNC ENSG00000100228 175 0 0 47 20 29.8507 IGSF11 0 genome.wustl.edu 37 3 118621614 118621614 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 3 118621614 118621614 C T SNP IGSF11 ENST00000393775 human ensembl 74_37 -1 known missense c.1049 p.G350D 0.921 NULL pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors IGSF11 HGNC ENSG00000144847 205 0 0 100 57 36.3057 IFT122 0 genome.wustl.edu 37 3 129221675 129221675 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 3 129221675 129221675 G A SNP IFT122 ENST00000296266 human ensembl 74_37 +1 known missense c.2650 p.D884N 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT122 HGNC ENSG00000163913 160 0 0 51 33 39.2857 FGD5 0 genome.wustl.edu 37 3 14861698 14861698 + Missense_Mutation SNP T T G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 3 14861698 14861698 T G SNP FGD5 ENST00000285046 human ensembl 74_37 +1 known missense c.1120 p.S374A 0.642 NULL pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain - no_errors FGD5 HGNC ENSG00000154783 147 0 0 74 12 13.9535 RTP1 0 genome.wustl.edu 37 3 186917605 186917605 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 3 186917605 186917605 G A SNP RTP1 ENST00000312295 human ensembl 74_37 +1 known missense c.539 p.R180H 1.000 NULL NULL - no_errors RTP1 HGNC ENSG00000175077 45 0 0 35 19 35.1852 CDC25A 0 genome.wustl.edu 37 3 48224509 48224509 + Missense_Mutation SNP C C G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 3 48224509 48224509 C G SNP CDC25A ENST00000302506 human ensembl 74_37 -1 known missense c.339 p.L113F 1.000 pfam_MPI_Phosphatase pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase - no_errors CDC25A HGNC ENSG00000164045 105 0 0 42 21 33.3333 UBA7 0 genome.wustl.edu 37 3 49847484 49847484 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 3 49847484 49847484 G A SNP UBA7 ENST00000333486 human ensembl 74_37 -1 known missense c.1766 p.A589V 0.000 pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1 pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1 - no_errors UBA7 HGNC ENSG00000182179 158 0 0 89 9 9.18367 ANK2 0 genome.wustl.edu 37 4 114223992 114223992 + Nonsense_Mutation SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 4 114223992 114223992 G T SNP ANK2 ENST00000357077 human ensembl 74_37 +1 known nonsense c.2545 p.E849* 1.000 NULL pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt - no_errors ANK2 HGNC ENSG00000145362 159 0 0 33 4 10.8108 FABP2 0 genome.wustl.edu 37 4 120241826 120241826 + Missense_Mutation SNP C C A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 4 120241826 120241826 C A SNP FABP2 ENST00000274024 human ensembl 74_37 -1 known missense c.239 p.R80M 0.000 pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd - no_errors FABP2 HGNC ENSG00000145384 134 0 0 25 5 16.6667 PCDH10 0 genome.wustl.edu 37 4 134073167 134073167 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 4 134073167 134073167 C T SNP PCDH10 ENST00000264360 human ensembl 74_37 +1 known silent c.1872 p.N624 0.998 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH10 HGNC ENSG00000138650 143 0 0 35 27 43.5484 ADAM29 0 genome.wustl.edu 37 4 175897990 175897990 + Silent SNP T T G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 4 175897990 175897990 T G SNP ADAM29 ENST00000359240 human ensembl 74_37 +1 known silent c.1314 p.A438 0.998 pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,prints_Blood-coag_inhib_Disintegrin pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin - no_errors ADAM29 HGNC ENSG00000168594 155 0 0 43 27 38.5714 ASB5 0 genome.wustl.edu 37 4 177146474 177146474 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 4 177146474 177146474 G A SNP ASB5 ENST00000296525 human ensembl 74_37 -1 known missense c.215 p.S72L 1.000 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C - no_errors ASB5 HGNC ENSG00000164122 120 0 0 19 32 62.7451 RGS12 0 genome.wustl.edu 37 4 3432142 3432142 + Nonsense_Mutation SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 4 3432142 3432142 G T SNP RGS12 ENST00000344733 human ensembl 74_37 +1 known nonsense c.3574 p.E1192* 1.000 pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom - no_errors RGS12 HGNC ENSG00000159788 228 0 0 51 19 27.1429 CTNND2 0 genome.wustl.edu 37 5 11346621 11346621 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 11346621 11346621 G A SNP CTNND2 ENST00000304623 human ensembl 74_37 -1 known silent c.1491 p.S497 1.000 NULL pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo - no_errors CTNND2 HGNC ENSG00000169862 242 0 0 142 36 20.2247 DNAH5 0 genome.wustl.edu 37 5 13716678 13716678 + Missense_Mutation SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 13716678 13716678 A G SNP DNAH5 ENST00000265104 human ensembl 74_37 -1 known missense c.12827 p.M4276T 1.000 pfam_Dynein_heavy_dom pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DNAH5 HGNC ENSG00000039139 84 0 0 46 12 20.6897 PCDHA6 0 genome.wustl.edu 37 5 140207976 140207976 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 140207976 140207976 G A SNP PCDHA6 ENST00000529310 human ensembl 74_37 +1 known silent c.300 p.A100 0.000 pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA6 HGNC ENSG00000081842 469 0 0 130 50 27.7778 PCDHB4 0 genome.wustl.edu 37 5 140502259 140502259 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 140502259 140502259 G A SNP PCDHB4 ENST00000194152 human ensembl 74_37 +1 known missense c.679 p.V227I 0.003 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB4 HGNC ENSG00000081818 167 0 0 51 22 30.137 PCDHB14 0 genome.wustl.edu 37 5 140604697 140604697 + Silent SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 140604697 140604697 G T SNP PCDHB14 ENST00000239449 human ensembl 74_37 +1 known silent c.1620 p.A540 0.631 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB14 HGNC ENSG00000120327 201 0 0 74 4 5.12821 PCDHGA4 0 genome.wustl.edu 37 5 140736094 140736094 + Missense_Mutation SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 140736094 140736094 A G SNP PCDHGA4 ENST00000571252 human ensembl 74_37 +1 known missense c.1327 p.M443V 0.014 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA4 HGNC ENSG00000262576 149 0 0 42 5 10.6383 C5orf42 0 genome.wustl.edu 37 5 37169353 37169353 + Missense_Mutation SNP C C A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 37169353 37169353 C A SNP C5orf42 ENST00000425232 human ensembl 74_37 -1 known missense c.6773 p.R2258I 0.948 NULL superfamily_Quino_amine_DH_bsu - no_errors C5orf42 HGNC ENSG00000197603 173 0 0 123 23 15.7534 ADAMTS16 0 genome.wustl.edu 37 5 5235251 5235251 + Nonsense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 5235251 5235251 C T SNP ADAMTS16 ENST00000274181 human ensembl 74_37 +1 known nonsense c.1975 p.R659* 0.975 NULL pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS16 HGNC ENSG00000145536 150 0 0 58 45 43.6893 IQGAP2 0 genome.wustl.edu 37 5 75967731 75967731 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 75967731 75967731 G A SNP IQGAP2 ENST00000274364 human ensembl 74_37 +1 known silent c.2991 p.S997 0.979 pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP - no_errors IQGAP2 HGNC ENSG00000145703 69 0 0 10 10 50 ATP6AP1L 0 genome.wustl.edu 37 5 81613993 81613993 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 81613993 81613993 C T SNP ATP6AP1L ENST00000380167 human ensembl 74_37 +1 known silent c.549 p.I183 0.000 NULL NULL - no_errors ATP6AP1L HGNC ENSG00000205464 110 0 0 36 3 7.69231 TAS2R1 0 genome.wustl.edu 37 5 9629277 9629277 + Nonsense_Mutation SNP T T A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 9629277 9629277 T A SNP TAS2R1 ENST00000382492 human ensembl 74_37 -1 known nonsense c.868 p.K290* 0.000 pfam_TAS2_rcpt pfam_TAS2_rcpt - no_errors TAS2R1 HGNC ENSG00000169777 160 0 0 90 20 18.1818 AHI1 0 genome.wustl.edu 37 6 135784313 135784313 + Missense_Mutation SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 135784313 135784313 T C SNP AHI1 ENST00000265602 human ensembl 74_37 -1 known missense c.881 p.Q294R 0.919 NULL pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain - no_errors AHI1 HGNC ENSG00000135541 102 0 0 41 4 8.88889 PHACTR2 0 genome.wustl.edu 37 6 144075049 144075049 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 144075049 144075049 G A SNP PHACTR2 ENST00000440869 human ensembl 74_37 +1 known missense c.454 p.E152K 1.000 NULL pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat - no_errors PHACTR2 HGNC ENSG00000112419 49 0 0 16 6 27.2727 SYNE1 0 genome.wustl.edu 37 6 152725384 152725384 + Silent SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 152725384 152725384 T C SNP SYNE1 ENST00000265368 human ensembl 74_37 -1 known silent c.6789 p.E2263 1.000 superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE1 HGNC ENSG00000131018 132 1 0.75188 44 18 29.0323 TIAM2 0 genome.wustl.edu 37 6 155504497 155504497 + Missense_Mutation SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 155504497 155504497 A G SNP TIAM2 ENST00000456144 human ensembl 74_37 +1 known missense c.2927 p.D976G 0.000 superfamily_PDZ,smart_PDZ,pfscan_PDZ pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain - no_errors TIAM2 HGNC ENSG00000146426 135 0 0 114 13 10.2362 SCGN 0 genome.wustl.edu 37 6 25670264 25670264 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 25670264 25670264 C T SNP SCGN ENST00000377961 human ensembl 74_37 +1 known missense c.431 p.A144V 0.002 NULL smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors SCGN HGNC ENSG00000079689 314 0 0 160 31 16.2304 VPS52 0 genome.wustl.edu 37 6 33231791 33231791 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 33231791 33231791 C T SNP VPS52 ENST00000445902 human ensembl 74_37 -1 known silent c.1614 p.Q538 1.000 pfam_Vps52 pfam_Vps52,pfam_Exocyst_Exoc1/SEC3 - no_errors VPS52 HGNC ENSG00000223501 289 0 0 155 28 15.3005 DST 0 genome.wustl.edu 37 6 56716385 56716385 + Silent SNP G G C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 56716385 56716385 G C SNP DST ENST00000370754 human ensembl 74_37 -1 known silent c.435 p.S145 1.000 superfamily_ABC1_TM_dom pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom - no_errors DST HGNC ENSG00000151914 55 0 0 29 5 14.7059 PRIM2 0 genome.wustl.edu 37 6 57372310 57372310 + Missense_Mutation SNP C C A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 57372310 57372310 C A SNP PRIM2 ENST00000607273 human ensembl 74_37 +1 known missense c.716 p.A239D 0.995 pfam_DNA_primase_lsu_euk/arc pfam_DNA_primase_lsu_euk/arc - no_errors PRIM2 HGNC ENSG00000146143 111 0 0 49 9 15.5172 LHFPL3 0 genome.wustl.edu 37 7 104377349 104377349 + Nonsense_Mutation SNP G G T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 7 104377349 104377349 G T SNP LHFPL3 ENST00000535008 human ensembl 74_37 +1 known nonsense c.673 p.E225* 1.000 NULL pfam_Lipome_HGMIC_fus_partner-like - no_errors LHFPL3 HGNC ENSG00000187416 21 0 0 7 3 30 DGKB 0 genome.wustl.edu 37 7 14613993 14613993 + Silent SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 7 14613993 14613993 G A SNP DGKB ENST00000258767 human ensembl 74_37 -1 known silent c.1617 p.Y539 1.000 pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd - no_errors DGKB HGNC ENSG00000136267 140 0 0 47 12 20.339 SPAG1 0 genome.wustl.edu 37 8 101237549 101237549 + Missense_Mutation SNP C C G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 8 101237549 101237549 C G SNP SPAG1 ENST00000251809 human ensembl 74_37 +1 known missense c.1837 p.R613G 0.000 NULL pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors SPAG1 HGNC ENSG00000104450 65 0 0 29 19 39.5833 EIF3H 0 genome.wustl.edu 37 8 117658748 117658748 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 8 117658748 117658748 G A SNP EIF3H ENST00000521861 human ensembl 74_37 -1 known missense c.923 p.P308L 0.230 NULL pfam_JAB_MPN_dom,smart_JAB_MPN_dom - no_errors EIF3H HGNC ENSG00000147677 386 0 0 127 74 36.8159 MSR1 0 genome.wustl.edu 37 8 16021687 16021687 + Missense_Mutation SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 8 16021687 16021687 T C SNP MSR1 ENST00000262101 human ensembl 74_37 -1 known missense c.704 p.H235R 0.071 superfamily_STAT_TF_coiled-coil pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR - no_errors MSR1 HGNC ENSG00000038945 76 0 0 6 9 60 ADAM7 0 genome.wustl.edu 37 8 24358343 24358343 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 8 24358343 24358343 C T SNP ADAM7 ENST00000175238 human ensembl 74_37 +1 known silent c.2043 p.V681 0.000 NULL pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin - no_errors ADAM7 HGNC ENSG00000069206 174 0 0 56 11 16.4179 RUNX1T1 0 genome.wustl.edu 37 8 92983012 92983012 + Silent SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 8 92983012 92983012 C T SNP RUNX1T1 ENST00000436581 human ensembl 74_37 -1 known silent c.1446 p.A482 0.012 prints_ETO pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8 - no_errors RUNX1T1 HGNC ENSG00000079102 91 0 0 35 10 22.2222 SUSD1 0 genome.wustl.edu 37 9 114840902 114840902 + Missense_Mutation SNP G G A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 114840902 114840902 G A SNP SUSD1 ENST00000374264 human ensembl 74_37 -1 known missense c.1669 p.R557C 0.033 superfamily_Fibronectin_type3 pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP - no_errors SUSD1 HGNC ENSG00000106868 173 0 0 41 35 46.0526 SH2D3C 0 genome.wustl.edu 37 9 130504085 130504085 + Silent SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 130504085 130504085 A G SNP SH2D3C ENST00000314830 human ensembl 74_37 -1 known silent c.2070 p.G690 0.975 pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25 pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25 - no_errors SH2D3C HGNC ENSG00000095370 79 0 0 59 13 18.0556 GBGT1 0 genome.wustl.edu 37 9 136029548 136029548 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 136029548 136029548 C T SNP GBGT1 ENST00000372040 human ensembl 74_37 -1 known missense c.460 p.V154I 0.067 pfam_Glyco_trans_6 pfam_Glyco_trans_6 - no_errors GBGT1 HGNC ENSG00000148288 85 0 0 20 18 47.3684 ADAMTS13 0 genome.wustl.edu 37 9 136320437 136320437 + Missense_Mutation SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 136320437 136320437 C T SNP ADAMTS13 ENST00000371929 human ensembl 74_37 +1 known missense c.3280 p.R1094C 0.332 pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS13 HGNC ENSG00000160323 335 0 0 127 36 22.0859 DCAF10 0 genome.wustl.edu 37 9 37861563 37861563 + RNA SNP T T A TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 37861563 37861563 T A SNP DCAF10 ENST00000483167 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors DCAF10 HGNC ENSG00000122741 91 0 0 32 6 15.7895 TJP2 0 genome.wustl.edu 37 9 71840295 71840295 + Missense_Mutation SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 71840295 71840295 A G SNP TJP2 ENST00000539225 human ensembl 74_37 +1 known missense c.1121 p.N374S 1.000 pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens - no_errors TJP2 HGNC ENSG00000119139 61 0 0 25 12 32.4324 C9orf135 0 genome.wustl.edu 37 9 72521031 72521031 + Silent SNP T T C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 72521031 72521031 T C SNP C9orf135 ENST00000377197 human ensembl 74_37 +1 known silent c.669 p.S223 0.000 NULL NULL - no_errors C9orf135 HGNC ENSG00000204711 155 0 0 44 9 16.9811 FBP1 0 genome.wustl.edu 37 9 97367856 97367856 + Missense_Mutation SNP A A C TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 9 97367856 97367856 A C SNP FBP1 ENST00000375326 human ensembl 74_37 -1 known missense c.708 p.D236E 1.000 pfam_FBPase_class-1/SBPase,prints_FBPtase pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase - no_errors FBP1 HGNC ENSG00000165140 52 0 0 19 3 13.6364 BRS3 0 genome.wustl.edu 37 X 135572290 135572290 + Splice_Site SNP A A G TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 X 135572290 135572290 A G SNP BRS3 ENST00000370648 human ensembl 74_37 +1 known splice_site c.435-2 e2-2 1.000 - - - no_errors BRS3 HGNC ENSG00000102239 138 0 0 61 4 6.15385 CSAG4 0 genome.wustl.edu 37 X 151896273 151896273 + RNA SNP C C T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 X 151896273 151896273 C T SNP CSAG4 ENST00000361201 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors CSAG4 HGNC ENSG00000242599 231 0 0 73 4 5.19481 SYCP1 0 genome.wustl.edu 37 1 115428813 115428813 + Frame_Shift_Del DEL A A - TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 115428813 115428813 A - DEL SYCP1 ENST00000369518 human ensembl 74_37 +1 known frame_shift_del c.1073 p.E360fs 1.000 pfam_SCP-1 pfam_SCP-1 - no_errors SYCP1 HGNC ENSG00000198765 161 0 0 47 10 17.5439 TAF5L 0 genome.wustl.edu 37 1 229730496 229730521 + Frame_Shift_Del DEL AGTTTGAATTAGGGTGGAATTTGACA AGTTTGAATTAGGGTGGAATTTGACA - TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 AGTTTGAATTAGGGTGGAATTTGACA AGTTTGAATTAGGGTGGAATTTGACA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 229730496 229730521 AGTTTGAATTAGGGTGGAATTTGACA - DEL TAF5L ENST00000258281 human ensembl 74_37 -1 known frame_shift_del c.1318_1293 p.C431fs 1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.998:1.000:1.000:0.705:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.982:0.992:0.997:0.997:1.000:1.000:0.996 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TAF5L HGNC ENSG00000135801 284 0 0 125 11 8.08824 AGO4 0 genome.wustl.edu 37 1 36297027 36297028 + Frame_Shift_Ins INS - - T TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 1 36297027 36297028 - T INS AGO4 ENST00000373210 human ensembl 74_37 +1 known frame_shift_ins c.850_849 p.P286fs 1.000:1.000 pfam_PAZ_dom,superfamily_PAZ_dom,smart_PAZ_dom,pfscan_PAZ_dom pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi - no_errors AGO4 HGNC ENSG00000134698 132 0 0 35 12 25.5319 SLCO2B1 0 genome.wustl.edu 37 11 74880733 74880748 + Frame_Shift_Del DEL GATGGGGCCAGGCCTG GATGGGGCCAGGCCTG - TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 GATGGGGCCAGGCCTG GATGGGGCCAGGCCTG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 11 74880733 74880748 GATGGGGCCAGGCCTG - DEL SLCO2B1 ENST00000289575 human ensembl 74_37 +1 known frame_shift_del c.705_720 p.M236fs 1.000:1.000:1.000:0.998:1.000:1.000:0.992:1.000:1.000:0.971:0.983:0.972:0.665:0.243:0.995:1.000 pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter - no_errors SLCO2B1 HGNC ENSG00000137491 249 0 0 98 7 6.66667 ADH6 0 genome.wustl.edu 37 4 100128701 100128702 + In_Frame_Ins INS - - CCC TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 4 100128701 100128702 - CCC INS ADH6 ENST00000394899 human ensembl 74_37 -1 known in_frame_ins c.866_865 p.289in_frame_insG 0.204:0.203 pfam_ADH_C,smart_PKS_ER pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER - no_errors ADH6 HGNC ENSG00000172955 125 0 0 48 10 17.2414 BTNL3 0 genome.wustl.edu 37 5 180432479 180432479 + Frame_Shift_Del DEL C C - TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 5 180432479 180432479 C - DEL BTNL3 ENST00000342868 human ensembl 74_37 +1 known frame_shift_del c.1008 p.Q337fs 0.372 superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin - no_errors BTNL3 HGNC ENSG00000168903 179 0 0 49 22 30.9859 PRRC2A 0 genome.wustl.edu 37 6 31601316 31601316 + Frame_Shift_Del DEL G G - TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 6 31601316 31601316 G - DEL PRRC2A ENST00000376007 human ensembl 74_37 +1 known frame_shift_del c.4480 p.G1495fs 1.000 NULL pfam_BAT2_N - no_errors PRRC2A HGNC ENSG00000204469 114 0 0 47 8 14.5455 OR2A25 0 genome.wustl.edu 37 7 143772005 143772005 + Frame_Shift_Del DEL G G - TCGA-BR-8373-01A-11D-2340-08 TCGA-BR-8373-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1f2a8889-4374-4037-bb56-0f20733380e3 2c5cc2c4-1c45-478b-9575-8e0206bb7de3 7 143772005 143772005 G - DEL OR2A25 ENST00000408898 human ensembl 74_37 +1 known frame_shift_del c.693 p.C233fs 0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2A25 HGNC ENSG00000221933 174 0 0 75 41 35.3448