Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF SPAG17 0 genome.wustl.edu 37 1 118550748 118550748 + Silent SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 1 118550748 118550748 G A SNP SPAG17 ENST00000336338 human ensembl 74_37 -1 known silent c.4506 p.I1502 1.000 NULL NULL - no_errors SPAG17 HGNC ENSG00000155761 80 0 0 59 8 11.9403 CADM3 0 genome.wustl.edu 37 1 159166790 159166790 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 1 159166790 159166790 G A SNP CADM3 ENST00000368124 human ensembl 74_37 +1 known missense c.994 p.G332S 0.963 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom - no_errors CADM3 HGNC ENSG00000162706 132 0 0 83 5 5.68182 CFH 0 genome.wustl.edu 37 1 196696029 196696029 + Missense_Mutation SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 1 196696029 196696029 C T SNP CFH ENST00000367429 human ensembl 74_37 +1 known missense c.2195 p.T732M 0.000 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CFH HGNC ENSG00000000971 129 0 0 86 8 8.51064 OBSCN 0 genome.wustl.edu 37 1 228430947 228430947 + Missense_Mutation SNP C C G TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 1 228430947 228430947 C G SNP OBSCN ENST00000422127 human ensembl 74_37 +1 known missense c.2993 p.A998G 0.015 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain - no_errors OBSCN HGNC ENSG00000154358 61 0 0 6 13 68.4211 HMGN2 0 genome.wustl.edu 37 1 26801762 26801762 + RNA SNP G G T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 1 26801762 26801762 G T SNP HMGN2 ENST00000460563 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors HMGN2 HGNC ENSG00000198830 17 0 0 6 10 62.5 C8B 0 genome.wustl.edu 37 1 57406638 57406638 + Nonsense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 1 57406638 57406638 G A SNP C8B ENST00000371237 human ensembl 74_37 -1 known nonsense c.1282 p.R428* 0.969 pfam_MACPF,smart_MACPF pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin - no_errors C8B HGNC ENSG00000021852 61 0 0 28 4 12.5 CHST15 0 genome.wustl.edu 37 10 125805683 125805683 + Missense_Mutation SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 10 125805683 125805683 C T SNP CHST15 ENST00000346248 human ensembl 74_37 -1 known missense c.46 p.A16T 0.000 NULL pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase - no_errors CHST15 HGNC ENSG00000182022 114 0 0 56 12 17.6471 DENND5A 0 genome.wustl.edu 37 11 9199806 9199806 + Missense_Mutation SNP A A T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 11 9199806 9199806 A T SNP DENND5A ENST00000328194 human ensembl 74_37 -1 known missense c.1779 p.D593E 0.998 NULL pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run - no_errors DENND5A HGNC ENSG00000184014 195 0 0 165 17 9.34066 CMKLR1 0 genome.wustl.edu 37 12 108686331 108686331 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 12 108686331 108686331 G A SNP CMKLR1 ENST00000312143 human ensembl 74_37 -1 known missense c.409 p.R137C 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_DEZorph_rcpt,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt - no_errors CMKLR1 HGNC ENSG00000174600 106 0 0 50 8 13.7931 LINC00477 0 genome.wustl.edu 37 12 24736768 24736768 + RNA SNP C C A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 12 24736768 24736768 C A SNP LINC00477 ENST00000483544 human ensembl 74_37 -1 known rna NULL NULL 0.001 - - - no_errors LINC00477 HGNC ENSG00000197503 108 1 0.917431 54 13 19.403 SPRYD4 0 genome.wustl.edu 37 12 56862905 56862905 + Missense_Mutation SNP G G T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 12 56862905 56862905 G T SNP SPRYD4 ENST00000338146 human ensembl 74_37 +1 known missense c.168 p.L56F 1.000 superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin - no_errors SPRYD4 HGNC ENSG00000176422 134 0 0 63 4 5.97015 MDM2 0 genome.wustl.edu 37 12 69230464 69230464 + Missense_Mutation SNP A A C TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 12 69230464 69230464 A C SNP MDM2 ENST00000462284 human ensembl 74_37 +1 known missense c.853 p.T285P 1.000 superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4 pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING - no_errors MDM2 HGNC ENSG00000135679 180 1 0.552486 131 28 17.6101 COMMD6 0 genome.wustl.edu 37 13 76111694 76111694 + RNA SNP G G C TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 13 76111694 76111694 G C SNP COMMD6 ENST00000471682 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors COMMD6 HGNC ENSG00000188243 19 0 0 0 6 100 SLITRK5 0 genome.wustl.edu 37 13 88329455 88329455 + Silent SNP C C A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 13 88329455 88329455 C A SNP SLITRK5 ENST00000325089 human ensembl 74_37 +1 known silent c.1812 p.R604 0.361 smart_Cys-rich_flank_reg_C pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C - no_errors SLITRK5 HGNC ENSG00000165300 312 0 0 185 20 9.7561 AP1G2 0 genome.wustl.edu 37 14 24030613 24030613 + Missense_Mutation SNP G G T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 14 24030613 24030613 G T SNP AP1G2 ENST00000308724 human ensembl 74_37 -1 known missense c.1885 p.L629I 1.000 pirsf_AP1_complex_gsu pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app - no_errors AP1G2 HGNC ENSG00000213983 111 0 0 66 4 5.71429 GPATCH2L 0 genome.wustl.edu 37 14 76620846 76620846 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 14 76620846 76620846 G A SNP GPATCH2L ENST00000261530 human ensembl 74_37 +1 known missense c.140 p.R47H 1.000 NULL NULL - no_errors GPATCH2L HGNC ENSG00000089916 80 0 0 52 5 8.77193 SEPT12 0 genome.wustl.edu 37 16 4833960 4833960 + Missense_Mutation SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 16 4833960 4833960 C T SNP SEPT12 ENST00000268231 human ensembl 74_37 -1 known missense c.484 p.V162M 0.955 pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin pfam_Cell_div_GTP-bd,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin - no_errors SEPT12 HGNC ENSG00000140623 131 0 0 53 7 11.6667 RNF166 0 genome.wustl.edu 37 16 88767873 88767873 + RNA SNP C C A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 16 88767873 88767873 C A SNP RNF166 ENST00000564894 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors RNF166 HGNC ENSG00000158717 10 0 0 7 7 50 TBC1D26 0 genome.wustl.edu 37 17 15644506 15644506 + Missense_Mutation SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 17 15644506 15644506 C T SNP TBC1D26 ENST00000437605 human ensembl 74_37 +1 known missense c.617 p.A206V 0.996 pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D26 HGNC ENSG00000214946 93 0 0 48 4 7.69231 SPATA20 0 genome.wustl.edu 37 17 48628511 48628511 + Silent SNP C C A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 17 48628511 48628511 C A SNP SPATA20 ENST00000006658 human ensembl 74_37 +1 known silent c.1536 p.P512 0.001 superfamily_6-hairpin_glycosidase-like pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold - no_errors SPATA20 HGNC ENSG00000006282 61 0 0 16 12 42.8571 KCNH6 0 genome.wustl.edu 37 17 61601589 61601589 + Nonsense_Mutation SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 17 61601589 61601589 C T SNP KCNH6 ENST00000583023 human ensembl 74_37 +1 known nonsense c.166 p.R56* 1.000 pfam_PAS_fold,superfamily_PAS pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom - no_errors KCNH6 HGNC ENSG00000173826 318 0 0 171 31 15.3465 PITPNC1 0 genome.wustl.edu 37 17 65628319 65628319 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 17 65628319 65628319 G A SNP PITPNC1 ENST00000335257 human ensembl 74_37 +1 known missense c.427 p.D143N 1.000 pfam_PI_transfer pfam_PI_transfer,prints_PI_transfer - no_errors PITPNC1 HGNC ENSG00000154217 89 0 0 45 5 10 CDC37 0 genome.wustl.edu 37 19 10506724 10506724 + Silent SNP G G C TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 19 10506724 10506724 G C SNP CDC37 ENST00000222005 human ensembl 74_37 -1 known silent c.258 p.A86 0.182 pfam_Cdc37_N_dom pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C - no_errors CDC37 HGNC ENSG00000105401 277 0 0 108 22 16.9231 CCDC97 0 genome.wustl.edu 37 19 41822433 41822433 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 19 41822433 41822433 G A SNP CCDC97 ENST00000269967 human ensembl 74_37 +1 known missense c.191 p.S64N 0.053 NULL pfam_DUF2052_coiled-coil - no_errors CCDC97 HGNC ENSG00000142039 65 0 0 39 5 11.3636 FUT2 0 genome.wustl.edu 37 19 49206674 49206674 + Nonsense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 19 49206674 49206674 G A SNP FUT2 ENST00000391876 human ensembl 74_37 +1 known nonsense c.461 p.W154* 1.000 pfam_Glyco_trans_11 pfam_Glyco_trans_11 - no_errors FUT2 HGNC ENSG00000176920 120 0 0 70 8 10.2564 TUBB4A 0 genome.wustl.edu 37 19 6495726 6495726 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 19 6495726 6495726 G A SNP TUBB4A ENST00000264071 human ensembl 74_37 -1 known missense c.784 p.R262C 0.999 pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Alpha_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin - no_errors TUBB4A HGNC ENSG00000104833 124 0 0 92 14 13.2075 GALNT13 0 genome.wustl.edu 37 2 155099307 155099307 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 2 155099307 155099307 G A SNP GALNT13 ENST00000409237 human ensembl 74_37 +1 known missense c.575 p.R192H 1.000 pfam_Glyco_trans_2 pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors GALNT13 HGNC ENSG00000144278 72 0 0 36 4 10 TTN 0 genome.wustl.edu 37 2 179634421 179634421 + Missense_Mutation SNP T T G TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 2 179634421 179634421 T G SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.8887 p.T2963P 1.000 superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 118 1 0.840336 36 44 55 CERKL 0 genome.wustl.edu 37 2 182409462 182409462 + Missense_Mutation SNP T T G TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 2 182409462 182409462 T G SNP CERKL ENST00000339098 human ensembl 74_37 -1 known missense c.1408 p.K470Q 1.000 NULL pfam_Diacylglycerol_kinase_cat_dom - no_errors CERKL HGNC ENSG00000188452 48 0 0 42 6 12.5 CLK1 0 genome.wustl.edu 37 2 201722526 201722526 + Silent SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 2 201722526 201722526 G A SNP CLK1 ENST00000321356 human ensembl 74_37 -1 known silent c.747 p.Y249 0.997 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors CLK1 HGNC ENSG00000013441 103 0 0 77 15 16.3043 HJURP 0 genome.wustl.edu 37 2 234749948 234749948 + Missense_Mutation SNP T T C TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 2 234749948 234749948 T C SNP HJURP ENST00000411486 human ensembl 74_37 -1 known missense c.1478 p.K493R 0.000 NULL pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N - no_errors HJURP HGNC ENSG00000123485 139 0 0 63 10 13.6986 PRR21 0 genome.wustl.edu 37 2 240981487 240981487 + Missense_Mutation SNP A A G TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 2 240981487 240981487 A G SNP PRR21 ENST00000408934 human ensembl 74_37 -1 known missense c.913 p.C305R 0.000 NULL NULL - no_errors PRR21 HGNC ENSG00000221961 93 0 0 38 3 7.31707 NRXN1 0 genome.wustl.edu 37 2 51254918 51254918 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 2 51254918 51254918 G A SNP NRXN1 ENST00000402717 human ensembl 74_37 -1 known missense c.494 p.A165V 0.448 pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors NRXN1 HGNC ENSG00000179915 32 0 0 26 2 7.14286 ASTE1 0 genome.wustl.edu 37 3 130737361 130737361 + Missense_Mutation SNP A A C TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 3 130737361 130737361 A C SNP ASTE1 ENST00000264992 human ensembl 74_37 -1 known missense c.1502 p.I501S 0.000 NULL pfam_XPG_DNA_repair_N - no_errors ASTE1 HGNC ENSG00000034533 168 0 0 105 18 14.6341 GPR87 0 genome.wustl.edu 37 3 151012949 151012949 + Missense_Mutation SNP C C G TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 3 151012949 151012949 C G SNP GPR87 ENST00000260843 human ensembl 74_37 -1 known missense c.85 p.G29R 0.002 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt - no_errors GPR87 HGNC ENSG00000138271 176 0 0 97 18 15.6522 FAM212A 0 genome.wustl.edu 37 3 49842272 49842272 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 3 49842272 49842272 G A SNP FAM212A ENST00000333323 human ensembl 74_37 +1 known missense c.716 p.R239K 1.000 NULL NULL - no_errors FAM212A HGNC ENSG00000185614 271 0 0 67 31 31.6327 HDAC3 0 genome.wustl.edu 37 5 141014457 141014457 + Missense_Mutation SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 5 141014457 141014457 C T SNP HDAC3 ENST00000305264 human ensembl 74_37 -1 known missense c.202 p.D68N 1.000 pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1 pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse - no_errors HDAC3 HGNC ENSG00000171720 179 0 0 114 16 12.3077 SYNGAP1 0 genome.wustl.edu 37 6 33410696 33410696 + Silent SNP A A C TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 6 33410696 33410696 A C SNP SYNGAP1 ENST00000418600 human ensembl 74_37 +1 known silent c.2367 p.P789 1.000 pfam_DUF3498 pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP - no_errors SYNGAP1 HGNC ENSG00000197283 218 0 0 108 17 13.6 DST 0 genome.wustl.edu 37 6 56422200 56422200 + Missense_Mutation SNP C C A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 6 56422200 56422200 C A SNP DST ENST00000370754 human ensembl 74_37 -1 known missense c.14464 p.V4822L 0.094 pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom - no_errors DST HGNC ENSG00000151914 203 0 0 102 9 8.10811 FBXL13 0 genome.wustl.edu 37 7 102572363 102572363 + Nonsense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 7 102572363 102572363 G A SNP FBXL13 ENST00000313221 human ensembl 74_37 -1 known nonsense c.742 p.Q248* 1.000 smart_Leu-rich_rpt_Cys-con_subtyp smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom - no_errors FBXL13 HGNC ENSG00000161040 92 0 0 84 10 10.6383 HOXA6 0 genome.wustl.edu 37 7 27186928 27186928 + Silent SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 7 27186928 27186928 C T SNP HOXA6 ENST00000222728 human ensembl 74_37 -1 known silent c.441 p.A147 1.000 superfamily_Homeodomain-like pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia - no_errors HOXA6 HGNC ENSG00000106006 120 0 0 57 4 6.55738 DDX56 0 genome.wustl.edu 37 7 44611094 44611094 + Missense_Mutation SNP G G T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 7 44611094 44611094 G T SNP DDX56 ENST00000258772 human ensembl 74_37 -1 known missense c.887 p.S296Y 1.000 pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX56 HGNC ENSG00000136271 112 0 0 67 6 8.21918 WIPI2 0 genome.wustl.edu 37 7 5266933 5266933 + Missense_Mutation SNP G G C TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 7 5266933 5266933 G C SNP WIPI2 ENST00000288828 human ensembl 74_37 +1 known missense c.971 p.R324P 1.000 superfamily_WD40_repeat_dom,smart_WD40_repeat pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat - no_errors WIPI2 HGNC ENSG00000157954 123 1 0.806452 40 17 29.8246 NCALD 0 genome.wustl.edu 37 8 102731642 102731642 + Silent SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 8 102731642 102731642 G A SNP NCALD ENST00000311028 human ensembl 74_37 -1 known silent c.216 p.F72 0.441 pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin - no_errors NCALD HGNC ENSG00000104490 292 0 0 199 21 9.54545 FAM86B2 0 genome.wustl.edu 37 8 12283473 12283473 + Missense_Mutation SNP C C T TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 8 12283473 12283473 C T SNP FAM86B2 ENST00000393715 human ensembl 74_37 -1 known missense c.376 p.G126R 0.000 NULL NULL - no_errors FAM86B2 HGNC ENSG00000145002 9 0 0 6 3 33.3333 PDE7A 0 genome.wustl.edu 37 8 66635813 66635813 + Silent SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 8 66635813 66635813 G A SNP PDE7A ENST00000401827 human ensembl 74_37 -1 known silent c.1206 p.C402 1.000 pfam_PDEase_catalytic_dom pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE7A HGNC ENSG00000205268 85 0 0 31 2 6.06061 SEC16A 0 genome.wustl.edu 37 9 139370971 139370971 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 9 139370971 139370971 G A SNP SEC16A ENST00000313050 human ensembl 74_37 -1 known missense c.1097 p.S366L 0.954 NULL NULL - no_errors SEC16A HGNC ENSG00000148396 38 0 0 18 3 14.2857 SATL1 0 genome.wustl.edu 37 X 84363373 84363373 + Missense_Mutation SNP G G A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e X 84363373 84363373 G A SNP SATL1 ENST00000509231 human ensembl 74_37 -1 known missense c.602 p.P201L 0.001 NULL superfamily_Acyl_CoA_acyltransferase - no_errors SATL1 HGNC ENSG00000184788 194 0 0 109 11 9.16667 ARID1A 0 genome.wustl.edu 37 1 27057721 27057722 + Frame_Shift_Ins INS - - A TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 1 27057721 27057722 - A INS ARID1A ENST00000324856 human ensembl 74_37 +1 known frame_shift_ins c.1429_1430 p.H477fs 1.000:1.000 NULL pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID1A HGNC ENSG00000117713 621 0 0 211 40 15.9363 OR7E24 0 genome.wustl.edu 37 19 9361741 9361741 + Frame_Shift_Del DEL T T - TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 19 9361741 9361741 T - DEL OR7E24 ENST00000456448 human ensembl 74_37 +1 known frame_shift_del c.22 p.F11fs 0.000 NULL pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR7E24 HGNC ENSG00000237521 23 0 0 16 4 20 GNL1 0 genome.wustl.edu 37 6 30514006 30514008 + In_Frame_Del DEL TCC TCC - TCGA-BR-8365-01A-21D-2340-08 TCGA-BR-8365-10A-01D-2341-08 TCC TCC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 094f7fc0-9c0c-4dad-aad5-d1b4d91b976a 10f5d5aa-736e-4108-a459-c3274df8814e 6 30514006 30514008 TCC - DEL GNL1 ENST00000376621 human ensembl 74_37 -1 known in_frame_del c.1667_1665 p.E559in_frame_del 1.000:1.000:0.957 NULL pfam_GTP_binding_domain,superfamily_P-loop_NTPase - no_errors GNL1 HGNC ENSG00000204590 12 0 0 8 2 20