Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CELSR2	0	genome.wustl.edu	37	1	109806868	109806868	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	109806868	109806868	C	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.5170	p.Q1724K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				81	0	0	53	3	5.35714
SCNN1D	0	genome.wustl.edu	37	1	1226757	1226757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	1226757	1226757	G	A	SNP	SCNN1D	ENST00000379116	human	ensembl	74_37	+1	known	missense	c.2176	p.G726S	0.004	tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1D	HGNC	ENSG00000162572				10	0	0	9	3	25
PDE4DIP	0	genome.wustl.edu	37	1	144922018	144922018	+	Silent	SNP	T	T	C			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	144922018	144922018	T	C	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	silent	c.1011	p.Q337	0.789	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				96	0	0	79	6	7.05882
ECM1	0	genome.wustl.edu	37	1	150483405	150483405	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	150483405	150483405	G	T	SNP	ECM1	ENST00000369049	human	ensembl	74_37	+1	known	missense	c.520	p.A174S	0.025	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369				108	0	0	59	13	18.0556
PIGR	0	genome.wustl.edu	37	1	207112623	207112623	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	207112623	207112623	T	A	SNP	PIGR	ENST00000356495	human	ensembl	74_37	-1	known	nonsense	c.229	p.K77*	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PIGR	HGNC	ENSG00000162896				49	0	0	41	4	8.88889
LAMB3	0	genome.wustl.edu	37	1	209800260	209800260	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	209800260	209800260	G	T	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	missense	c.1549	p.R517S	0.990	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				42	0	0	35	2	5.40541
UBXN11	0	genome.wustl.edu	37	1	26608885	26608885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	26608885	26608885	C	T	SNP	UBXN11	ENST00000374221	human	ensembl	74_37	-1	known	missense	c.1468	p.G490S	0.000	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062				60	0	0	47	8	14.5455
INPP5B	0	genome.wustl.edu	37	1	38339763	38339763	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	38339763	38339763	T	C	SNP	INPP5B	ENST00000373023	human	ensembl	74_37	-1	known	missense	c.2093	p.Q698R	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084				39	0	0	28	4	12.5
SZT2	0	genome.wustl.edu	37	1	43907245	43907245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	43907245	43907245	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.7411	p.R2471C	0.986	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				136	1	0.729927	103	16	13.4454
SZT2	0	genome.wustl.edu	37	1	43913551	43913551	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	1	43913551	43913551	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	nonsense	c.9301	p.R3101*	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				111	0	0	99	7	6.60377
HSD17B7P2	0	genome.wustl.edu	37	10	38645343	38645343	+	RNA	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	10	38645343	38645343	C	T	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				14	0	0	7	4	36.3636
ALOX5	0	genome.wustl.edu	37	10	45891347	45891347	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	10	45891347	45891347	C	T	SNP	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	nonsense	c.394	p.R132*	0.999	superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779				53	0	0	39	4	9.30233
OR52N2	0	genome.wustl.edu	37	11	5841963	5841963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	11	5841963	5841963	G	A	SNP	OR52N2	ENST00000317037	human	ensembl	74_37	+1	known	missense	c.398	p.R133H	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988				74	0	0	54	10	15.625
RIMBP2	0	genome.wustl.edu	37	12	130935771	130935771	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	12	130935771	130935771	G	C	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.422	p.S141C	0.855	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				107	0	0	60	8	11.7647
SOX5	0	genome.wustl.edu	37	12	23687217	23687217	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	12	23687217	23687217	T	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.2228	p.E743V	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				176	0	0	108	16	12.9032
KCNA1	0	genome.wustl.edu	37	12	5021648	5021648	+	Silent	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	12	5021648	5021648	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	silent	c.1104	p.V368	0.988	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				200	0	0	126	14	10
WBP4	0	genome.wustl.edu	37	13	41657016	41657016	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	13	41657016	41657016	C	A	SNP	WBP4	ENST00000379487	human	ensembl	74_37	+1	known	missense	c.1097	p.S366Y	1.000	NULL	pfam_WW_dom,pfam_Znf_U1-C,superfamily_WW_dom,smart_Znf_U1,smart_WW_dom,pfscan_WW_dom,pfscan_Znf_C2H2_matrin	-	no_errors	WBP4	HGNC	ENSG00000120688				41	0	0	25	3	10.7143
CEBPE	0	genome.wustl.edu	37	14	23586911	23586911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	14	23586911	23586911	G	A	SNP	CEBPE	ENST00000206513	human	ensembl	74_37	-1	known	missense	c.631	p.R211W	1.000	pfam_bZIP,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	pfam_bZIP,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	-	no_errors	CEBPE	HGNC	ENSG00000092067				99	0	0	55	4	6.77966
CMTM5	0	genome.wustl.edu	37	14	23847888	23847888	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	14	23847888	23847888	A	T	SNP	CMTM5	ENST00000339180	human	ensembl	74_37	+1	known	missense	c.290	p.H97L	0.000	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091				42	0	0	31	2	6.06061
FANCM	0	genome.wustl.edu	37	14	45650889	45650889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	14	45650889	45650889	G	A	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.4367	p.R1456H	0.974	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				20	0	0	19	3	13.6364
SYNE2	0	genome.wustl.edu	37	14	64457685	64457685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	14	64457685	64457685	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.2498	p.A833V	0.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				46	0	0	26	5	16.129
GALNT16	0	genome.wustl.edu	37	14	69814660	69814660	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	14	69814660	69814660	A	G	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	missense	c.1480	p.M494V	0.076	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				99	0	0	56	6	9.67742
NEK9	0	genome.wustl.edu	37	14	75570609	75570609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	14	75570609	75570609	C	T	SNP	NEK9	ENST00000238616	human	ensembl	74_37	-1	known	missense	c.1667	p.C556Y	1.000	superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_RCC1/BLIP-II,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638				111	0	0	86	8	8.51064
SAMD15	0	genome.wustl.edu	37	14	77845346	77845346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	14	77845346	77845346	G	A	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	missense	c.1585	p.E529K	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583				55	0	0	37	5	11.9048
ITFG1	0	genome.wustl.edu	37	16	47345222	47345222	+	Silent	SNP	G	G	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	16	47345222	47345222	G	T	SNP	ITFG1	ENST00000320640	human	ensembl	74_37	-1	known	silent	c.999	p.T333	0.993	NULL	NULL	-	no_errors	ITFG1	HGNC	ENSG00000129636				52	0	0	34	2	5.55556
ULK2	0	genome.wustl.edu	37	17	19748626	19748626	+	Silent	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	17	19748626	19748626	C	T	SNP	ULK2	ENST00000361658	human	ensembl	74_37	-1	known	silent	c.534	p.P178	0.216	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290				104	0	0	75	7	8.53659
KRTAP4-9	0	genome.wustl.edu	37	17	39262083	39262083	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	17	39262083	39262083	A	C	SNP	KRTAP4-9	ENST00000391415	human	ensembl	74_37	+1	known	missense	c.443	p.N148T	0.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722				36	0	0	23	3	11.5385
AXIN2	0	genome.wustl.edu	37	17	63537662	63537662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	17	63537662	63537662	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	missense	c.970	p.P324S	1.000	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				95	0	0	61	4	6.15385
ZNF532	0	genome.wustl.edu	37	18	56648785	56648785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	18	56648785	56648785	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.3347	p.P1116L	0.968	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				61	0	0	33	2	5.71429
OR10H1	0	genome.wustl.edu	37	19	15918646	15918646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	19	15918646	15918646	C	T	SNP	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	missense	c.202	p.V68I	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723				45	0	0	31	8	20.5128
POU2F2	0	genome.wustl.edu	37	19	42597998	42597998	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	19	42597998	42597998	C	A	SNP	POU2F2	ENST00000342301	human	ensembl	74_37	-1	known	missense	c.1181	p.S394I	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277				291	0	0	191	18	8.61244
PNMAL2	0	genome.wustl.edu	37	19	46997652	46997652	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	19	46997652	46997652	G	C	SNP	PNMAL2	ENST00000599531	human	ensembl	74_37	-1	known	missense	c.1071	p.I357M	0.010	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851				111	0	0	79	9	10.2273
ZNF808	0	genome.wustl.edu	37	19	53057818	53057818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	19	53057818	53057818	G	A	SNP	ZNF808	ENST00000359798	human	ensembl	74_37	+1	known	missense	c.1649	p.R550H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF808	HGNC	ENSG00000198482				178	0	0	107	11	9.32203
ZNF835	0	genome.wustl.edu	37	19	57175150	57175150	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	19	57175150	57175150	G	T	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	missense	c.1417	p.P473T	0.936	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				175	0	0	126	11	8.0292
ZNF544	0	genome.wustl.edu	37	19	58774032	58774032	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	19	58774032	58774032	C	A	SNP	ZNF544	ENST00000269829	human	ensembl	74_37	+1	known	missense	c.2060	p.P687H	0.986	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131				278	0	0	181	22	10.8374
PSD4	0	genome.wustl.edu	37	2	113943470	113943470	+	Silent	SNP	A	A	G			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	2	113943470	113943470	A	G	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	silent	c.1266	p.G422	0.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				10	0	0	8	5	38.4615
ITGA4	0	genome.wustl.edu	37	2	182322476	182322476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	2	182322476	182322476	G	A	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	missense	c.95	p.R32H	0.010	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232				25	0	0	18	4	18.1818
DYTN	0	genome.wustl.edu	37	2	207527632	207527632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	2	207527632	207527632	G	A	SNP	DYTN	ENST00000452335	human	ensembl	74_37	-1	known	missense	c.1628	p.P543L	0.007	NULL	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125				191	1	0.520833	106	11	9.40171
VIL1	0	genome.wustl.edu	37	2	219290514	219290514	+	Silent	SNP	C	C	G			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	2	219290514	219290514	C	G	SNP	VIL1	ENST00000248444	human	ensembl	74_37	+1	known	silent	c.327	p.G109	0.998	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VIL1	HGNC	ENSG00000127831				63	0	0	41	4	8.88889
BIRC6	0	genome.wustl.edu	37	2	32824836	32824836	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	2	32824836	32824836	T	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.13861	p.Y4621N	1.000	pfam_UBQ-conjugat_E2,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				68	0	0	42	7	14.2857
POLR1A	0	genome.wustl.edu	37	2	86276114	86276114	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	2	86276114	86276114	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	nonsense	c.2527	p.R843*	0.995	pfam_RNA_pol_Rpb1_4	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				43	0	0	34	5	12.8205
BPIFB4	0	genome.wustl.edu	37	20	31678530	31678530	+	Silent	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	20	31678530	31678530	G	A	SNP	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	silent	c.1068	p.G356	0.971	superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191				57	0	0	30	4	11.7647
DSCAM	0	genome.wustl.edu	37	21	42064772	42064772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	21	42064772	42064772	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.472	p.V158I	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				88	0	0	55	6	9.83607
POTEH	0	genome.wustl.edu	37	22	16287790	16287790	+	Silent	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	22	16287790	16287790	G	A	SNP	POTEH	ENST00000343518	human	ensembl	74_37	-1	known	silent	c.96	p.F32	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062				110	0	0	69	21	23.3333
UPB1	0	genome.wustl.edu	37	22	24896190	24896190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	22	24896190	24896190	G	A	SNP	UPB1	ENST00000326010	human	ensembl	74_37	+1	known	missense	c.220	p.V74M	0.990	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024				57	0	0	33	8	19.5122
PLCH1	0	genome.wustl.edu	37	3	155282805	155282805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	3	155282805	155282805	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.932	p.A311V	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				105	0	0	58	8	12.1212
MUC4	0	genome.wustl.edu	37	3	195511273	195511273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	3	195511273	195511273	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.7178	p.A2393V	0.006	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				12	0	0	5	4	44.4444
CHL1	0	genome.wustl.edu	37	3	370003	370003	+	Silent	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	3	370003	370003	C	T	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	silent	c.351	p.I117	0.622	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121				101	0	0	65	6	8.4507
NOA1	0	genome.wustl.edu	37	4	57839516	57839516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	4	57839516	57839516	C	T	SNP	NOA1	ENST00000264230	human	ensembl	74_37	-1	known	missense	c.1313	p.R438K	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	NOA1	HGNC	ENSG00000084092				142	0	0	73	12	14.1176
UTP15	0	genome.wustl.edu	37	5	72875773	72875773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	5	72875773	72875773	G	A	SNP	UTP15	ENST00000296792	human	ensembl	74_37	+1	known	missense	c.1411	p.E471K	1.000	pfam_U3_snoRNA-assocProt_15_C	pfam_U3_snoRNA-assocProt_15_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP15	HGNC	ENSG00000164338				39	0	0	25	3	10.7143
FNDC1	0	genome.wustl.edu	37	6	159653822	159653822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	6	159653822	159653822	C	T	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.2278	p.R760W	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				55	0	0	37	3	7.5
DST	0	genome.wustl.edu	37	6	56535574	56535574	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	6	56535574	56535574	T	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.980	p.E327G	1.000	superfamily_CH-domain,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				24	0	0	7	4	36.3636
TRIM56	0	genome.wustl.edu	37	7	100732852	100732852	+	Silent	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	7	100732852	100732852	G	A	SNP	TRIM56	ENST00000306085	human	ensembl	74_37	+1	known	silent	c.2259	p.P753	0.108	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871				20	0	0	19	3	13.6364
IMMP2L	0	genome.wustl.edu	37	7	110303717	110303717	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	7	110303717	110303717	G	T	SNP	IMMP2L	ENST00000331762	human	ensembl	74_37	-1	known	missense	c.469	p.Q157K	1.000	superfamily_Peptidase_S24_S26A/B/C	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,prints_Pept_S26A_signal_pept_1,tigrfam_Pept_S26A_signal_pept_1	-	no_errors	IMMP2L	HGNC	ENSG00000184903				68	0	0	30	3	9.09091
GPR141	0	genome.wustl.edu	37	7	37780620	37780620	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	7	37780620	37780620	C	T	SNP	GPR141	ENST00000334425	human	ensembl	74_37	+1	known	nonsense	c.625	p.Q209*	0.031	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR141	HGNC	ENSG00000187037				129	0	0	70	5	6.66667
PRKAR1B	0	genome.wustl.edu	37	7	720223	720223	+	Silent	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	7	720223	720223	G	A	SNP	PRKAR1B	ENST00000360274	human	ensembl	74_37	-1	known	silent	c.318	p.T106	0.001	pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1B	HGNC	ENSG00000188191				37	0	0	25	3	10.7143
GSDMC	0	genome.wustl.edu	37	8	130763792	130763792	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	8	130763792	130763792	C	T	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	nonsense	c.939	p.W313*	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697				77	0	0	39	3	7.14286
ALDOB	0	genome.wustl.edu	37	9	104187734	104187734	+	Splice_Site	SNP	C	C	G			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	9	104187734	104187734	C	G	SNP	ALDOB	ENST00000374855	human	ensembl	74_37	-1	known	splice_site	c.799+1	e6+1	1.000	-	-	-	no_errors	ALDOB	HGNC	ENSG00000136872				72	0	0	55	3	5.17241
BRINP1	0	genome.wustl.edu	37	9	121930162	121930162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	9	121930162	121930162	C	T	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1486	p.D496N	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				62	0	0	39	5	11.3636
BARHL1	0	genome.wustl.edu	37	9	135464778	135464778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	9	135464778	135464778	G	A	SNP	BARHL1	ENST00000263610	human	ensembl	74_37	+1	known	missense	c.853	p.A285T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	BARHL1	HGNC	ENSG00000125492				57	0	0	33	4	10.8108
FAM214B	0	genome.wustl.edu	37	9	35107995	35107995	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	9	35107995	35107995	G	T	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	missense	c.277	p.P93T	1.000	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				56	0	0	35	5	12.5
KDM4C	0	genome.wustl.edu	37	9	7174616	7174616	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	9	7174616	7174616	A	T	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	nonsense	c.3058	p.R1020*	1.000	superfamily_Chorismate_mutase_type_II	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				160	0	0	68	8	10.5263
COL4A6	0	genome.wustl.edu	37	X	107403018	107403018	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	X	107403018	107403018	G	T	SNP	COL4A6	ENST00000418180	human	ensembl	74_37	-1	known	missense	c.91	p.P31T	0.027	superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565				63	0	0	44	4	8.33333
RBBP7	0	genome.wustl.edu	37	X	16870202	16870202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	X	16870202	16870202	C	T	SNP	RBBP7	ENST00000380087	human	ensembl	74_37	-1	known	missense	c.1007	p.G336D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP7	HGNC	ENSG00000102054				262	0	0	167	19	10.2151
IQSEC2	0	genome.wustl.edu	37	X	53280269	53280269	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	X	53280269	53280269	C	G	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	missense	c.1489	p.E497Q	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				159	0	0	105	8	7.07965
KAL1	0	genome.wustl.edu	37	X	8591678	8591678	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	X	8591678	8591678	T	C	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	missense	c.289	p.R97G	0.427	NULL	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				36	0	0	18	4	18.1818
PCDH19	0	genome.wustl.edu	37	X	99662755	99662755	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	X	99662755	99662755	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.841	p.V281I	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				137	0	0	90	13	12.6214
FAM111B	0	genome.wustl.edu	37	11	58892376	58892377	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	11	58892376	58892377	-	A	INS	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	frame_shift_ins	c.806_807	p.K273fs	0.000:0.000	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057				26	0	0	14	3	17.6471
KRTAP23-1	0	genome.wustl.edu	37	21	31720889	31720891	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	21	31720889	31720891	GGA	-	DEL	KRTAP23-1	ENST00000334160	human	ensembl	74_37	-1	known	in_frame_del	c.36_34	p.S12in_frame_del	0.072:0.101:0.242	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP23-1	HGNC	ENSG00000186980				120	0	0	93	7	7
PDLIM5	0	genome.wustl.edu	37	4	95539322	95539323	+	In_Frame_Ins	INS	-	-	GCA			TCGA-BR-7957-01A-11D-2201-08	TCGA-BR-7957-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2cbf629c-ae30-41c6-855b-a96ebeb809dd	6f504eb7-0b62-48f9-b223-0a7e8ec9a606	4	95539322	95539323	-	GCA	INS	PDLIM5	ENST00000317968	human	ensembl	74_37	+1	known	in_frame_ins	c.1088_1089	p.365in_frame_insQ	1.000:1.000	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110				68	0	0	51	4	7.27273