Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF PEX14 0 genome.wustl.edu 37 1 10687392 10687392 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 10687392 10687392 A G SNP PEX14 ENST00000356607 human ensembl 74_37 +1 known missense c.649 p.N217D 0.997 NULL pfam_Pex14_N - no_errors PEX14 HGNC ENSG00000142655 84 0 0 60 36 37.5 ADORA3 0 genome.wustl.edu 37 1 112045631 112045631 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 112045631 112045631 C T SNP ADORA3 ENST00000369716 human ensembl 74_37 -1 known missense c.346 p.V116I 0.296 pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A3_rcpt,prints_GPCR_Rhodpsn - no_errors ADORA3 HGNC ENSG00000121933 47 0 0 30 7 18.9189 HRNR 0 genome.wustl.edu 37 1 152185618 152185618 + Silent SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152185618 152185618 G C SNP HRNR ENST00000368801 human ensembl 74_37 -1 known silent c.8487 p.L2829 0.000 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom - no_errors HRNR HGNC ENSG00000197915 63 0 0 92 6 6.12245 HRNR 0 genome.wustl.edu 37 1 152185707 152185707 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152185707 152185707 G C SNP HRNR ENST00000368801 human ensembl 74_37 -1 known missense c.8398 p.Q2800E 0.000 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom - no_errors HRNR HGNC ENSG00000197915 165 0 0 214 23 9.70464 HRNR 0 genome.wustl.edu 37 1 152185775 152185775 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152185775 152185775 G C SNP HRNR ENST00000368801 human ensembl 74_37 -1 known missense c.8330 p.S2777C 0.001 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom - no_errors HRNR HGNC ENSG00000197915 109 0 0 197 17 7.94393 FLG 0 genome.wustl.edu 37 1 152286772 152286772 + Missense_Mutation SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152286772 152286772 C A SNP FLG ENST00000368799 human ensembl 74_37 -1 known missense c.590 p.R197M 0.000 NULL pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin - no_errors FLG HGNC ENSG00000143631 53 0 0 113 6 5.04202 FLG2 0 genome.wustl.edu 37 1 152330090 152330090 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152330090 152330090 T C SNP FLG2 ENST00000388718 human ensembl 74_37 -1 known missense c.172 p.M58V 1.000 pfscan_EF_hand_dom pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin - no_errors FLG2 HGNC ENSG00000143520 77 0 0 86 6 6.52174 LCE2B 0 genome.wustl.edu 37 1 152659558 152659558 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152659558 152659558 T C SNP LCE2B ENST00000368780 human ensembl 74_37 +1 known missense c.239 p.L80P 0.000 NULL NULL - no_errors LCE2B HGNC ENSG00000159455 131 0 0 151 8 5.03145 KPRP 0 genome.wustl.edu 37 1 152732493 152732493 + Silent SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152732493 152732493 T G SNP KPRP ENST00000368773 human ensembl 74_37 +1 known silent c.429 p.T143 0.000 NULL NULL - no_errors KPRP HGNC ENSG00000203786 154 0 0 170 37 17.8744 SPRR3 0 genome.wustl.edu 37 1 152975747 152975747 + Missense_Mutation SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 152975747 152975747 A C SNP SPRR3 ENST00000295367 human ensembl 74_37 +1 known missense c.251 p.K84T 0.000 pfam_Cornifin pfam_Cornifin - no_errors SPRR3 HGNC ENSG00000163209 55 0 0 59 5 7.8125 OR10K2 0 genome.wustl.edu 37 1 158390620 158390620 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 158390620 158390620 T A SNP OR10K2 ENST00000314902 human ensembl 74_37 -1 known missense c.37 p.I13F 0.704 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10K2 HGNC ENSG00000180708 55 0 0 56 4 6.66667 OR10K1 0 genome.wustl.edu 37 1 158435654 158435654 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 158435654 158435654 G A SNP OR10K1 ENST00000289451 human ensembl 74_37 +1 known missense c.303 p.M101I 0.971 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10K1 HGNC ENSG00000173285 157 0 0 162 10 5.81395 SPTA1 0 genome.wustl.edu 37 1 158639573 158639573 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 158639573 158639573 C T SNP SPTA1 ENST00000368147 human ensembl 74_37 -1 known missense c.1603 p.V535I 0.959 pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3 - no_errors SPTA1 HGNC ENSG00000163554 143 0 0 166 19 10.2703 SPEN 0 genome.wustl.edu 37 1 16248837 16248837 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 16248837 16248837 G A SNP SPEN ENST00000375759 human ensembl 74_37 +1 known missense c.1843 p.E615K 1.000 NULL pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom - no_errors SPEN HGNC ENSG00000065526 45 0 0 65 5 7.14286 LMX1A 0 genome.wustl.edu 37 1 165175151 165175151 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 165175151 165175151 C T SNP LMX1A ENST00000294816 human ensembl 74_37 -1 known missense c.938 p.R313Q 1.000 NULL pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom - no_errors LMX1A HGNC ENSG00000162761 83 0 0 83 18 17.8218 TPR 0 genome.wustl.edu 37 1 186324590 186324590 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 186324590 186324590 C T SNP TPR ENST00000367478 human ensembl 74_37 -1 known missense c.2123 p.R708Q 1.000 NULL pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm - no_errors TPR HGNC ENSG00000047410 50 0 0 51 6 10.5263 CFHR3 0 genome.wustl.edu 37 1 196748352 196748352 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 196748352 196748352 G A SNP CFHR3 ENST00000367425 human ensembl 74_37 +1 known missense c.119 p.R40K 0.000 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CFHR3 HGNC ENSG00000116785 75 0 0 67 10 12.987 CFHR3 0 genome.wustl.edu 37 1 196749078 196749078 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 196749078 196749078 T C SNP CFHR3 ENST00000367425 human ensembl 74_37 +1 known silent c.405 p.S135 0.035 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CFHR3 HGNC ENSG00000116785 103 0 0 83 6 6.74157 PTPRC 0 genome.wustl.edu 37 1 198711490 198711490 + Silent SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 198711490 198711490 A G SNP PTPRC ENST00000442510 human ensembl 74_37 +1 known silent c.2691 p.Q897 1.000 pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRC HGNC ENSG00000081237 87 0 0 104 12 10.3448 INTS7 0 genome.wustl.edu 37 1 212156066 212156066 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 212156066 212156066 G A SNP INTS7 ENST00000440600 human ensembl 74_37 -1 known missense c.937 p.H313Y 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors INTS7 HGNC ENSG00000143493 112 0 0 96 16 14.2857 RAP1GAP 0 genome.wustl.edu 37 1 21929359 21929359 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 21929359 21929359 C T SNP RAP1GAP ENST00000290101 human ensembl 74_37 -1 known silent c.1668 p.P556 0.003 NULL pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom - no_errors RAP1GAP HGNC ENSG00000076864 64 0 0 57 19 25 ACTN2 0 genome.wustl.edu 37 1 236914822 236914822 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 236914822 236914822 G C SNP ACTN2 ENST00000366578 human ensembl 74_37 +1 known missense c.1709 p.G570A 0.078 pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom - no_errors ACTN2 HGNC ENSG00000077522 85 0 0 65 8 10.9589 RYR2 0 genome.wustl.edu 37 1 237617865 237617865 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 237617865 237617865 C T SNP RYR2 ENST00000360064 human ensembl 74_37 +1 known silent c.1461 p.F487 1.000 pfam_Ca-rel_channel pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif - no_errors RYR2 HGNC ENSG00000198626 22 0 0 11 5 31.25 RYR2 0 genome.wustl.edu 37 1 237675029 237675029 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 237675029 237675029 G A SNP RYR2 ENST00000360064 human ensembl 74_37 +1 known silent c.2754 p.E918 0.997 pfam_Ryanodine_rcpt pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif - no_errors RYR2 HGNC ENSG00000198626 12 0 0 2 6 75 OR2T6 0 genome.wustl.edu 37 1 248551074 248551074 + Silent SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 248551074 248551074 C A SNP OR2T6 ENST00000355728 human ensembl 74_37 +1 known silent c.165 p.L55 0.987 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM - no_errors OR2T6 HGNC ENSG00000198104 73 0 0 29 33 53.2258 OR2T10 0 genome.wustl.edu 37 1 248756332 248756332 + Silent SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 248756332 248756332 T A SNP OR2T10 ENST00000330500 human ensembl 74_37 -1 known silent c.738 p.T246 0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2T10 HGNC ENSG00000184022 43 0 0 48 9 15.7895 SZT2 0 genome.wustl.edu 37 1 43908169 43908169 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 43908169 43908169 G A SNP SZT2 ENST00000562955 human ensembl 74_37 +1 known silent c.7860 p.A2620 0.051 NULL NULL - no_errors SZT2 HGNC ENSG00000198198 66 0 0 44 7 13.7255 AJAP1 0 genome.wustl.edu 37 1 4832465 4832465 + Missense_Mutation SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 4832465 4832465 C A SNP AJAP1 ENST00000378190 human ensembl 74_37 +1 known missense c.1043 p.T348K 1.000 NULL NULL - no_errors AJAP1 HGNC ENSG00000196581 64 0 0 38 3 7.31707 PER3 0 genome.wustl.edu 37 1 7879395 7879395 + Missense_Mutation SNP G G T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 7879395 7879395 G T SNP PER3 ENST00000361923 human ensembl 74_37 +1 known missense c.1549 p.V517L 0.000 NULL pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS - no_errors PER3 HGNC ENSG00000049246 107 0 0 144 10 6.49351 GBP7 0 genome.wustl.edu 37 1 89617985 89617985 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 89617985 89617985 A T SNP GBP7 ENST00000294671 human ensembl 74_37 -1 known missense c.591 p.D197E 0.994 pfam_Guanylate-bd_N,superfamily_P-loop_NTPase pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase - no_errors GBP7 HGNC ENSG00000213512 140 0 0 94 6 6 DPYD 0 genome.wustl.edu 37 1 97915676 97915676 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 1 97915676 97915676 T G SNP DPYD ENST00000370192 human ensembl 74_37 -1 known missense c.1844 p.E615A 1.000 pfam_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH - no_errors DPYD HGNC ENSG00000188641 96 0 0 71 7 8.97436 PDCD11 0 genome.wustl.edu 37 10 105199528 105199528 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 105199528 105199528 G C SNP PDCD11 ENST00000369797 human ensembl 74_37 +1 known missense c.4051 p.A1351P 0.738 superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1 - no_errors PDCD11 HGNC ENSG00000148843 183 0 0 134 11 7.58621 CALHM1 0 genome.wustl.edu 37 10 105215108 105215108 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 105215108 105215108 C T SNP CALHM1 ENST00000329905 human ensembl 74_37 -1 known missense c.952 p.E318K 0.996 NULL NULL - no_errors CALHM1 HGNC ENSG00000185933 43 0 0 27 3 10 SORCS3 0 genome.wustl.edu 37 10 106401694 106401694 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 106401694 106401694 G C SNP SORCS3 ENST00000369701 human ensembl 74_37 +1 known missense c.609 p.W203C 1.000 NULL pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom - no_errors SORCS3 HGNC ENSG00000156395 25 0 0 19 3 13.6364 DCLRE1A 0 genome.wustl.edu 37 10 115605541 115605541 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 115605541 115605541 T A SNP DCLRE1A ENST00000361384 human ensembl 74_37 -1 known missense c.2281 p.N761Y 1.000 NULL pfam_DRMBL - no_errors DCLRE1A HGNC ENSG00000198924 98 0 0 74 28 27.451 TCERG1L 0 genome.wustl.edu 37 10 133107428 133107428 + Silent SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 133107428 133107428 A T SNP TCERG1L ENST00000368642 human ensembl 74_37 -1 known silent c.477 p.I159 0.182 NULL pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom - no_errors TCERG1L HGNC ENSG00000176769 58 0 0 28 5 15.1515 GPR123 0 genome.wustl.edu 37 10 134906618 134906618 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 134906618 134906618 T C SNP GPR123 ENST00000607359 human ensembl 74_37 +1 putative missense c.1889 p.L630P 0.002 NULL pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like - no_errors GPR123 HGNC ENSG00000197177 25 0 0 17 3 15 CUBN 0 genome.wustl.edu 37 10 16932369 16932369 + Splice_Site SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 16932369 16932369 C T SNP CUBN ENST00000377833 human ensembl 74_37 -1 known splice_site c.8755+1 e55+1 1.000 - - - no_errors CUBN HGNC ENSG00000107611 51 0 0 34 3 8.10811 ZNF248 0 genome.wustl.edu 37 10 38121107 38121107 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 38121107 38121107 C T SNP ZNF248 ENST00000357328 human ensembl 74_37 -1 known silent c.1176 p.K392 0.972 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF248 HGNC ENSG00000198105 99 0 0 88 10 10.2041 DNTT 0 genome.wustl.edu 37 10 98087281 98087281 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 10 98087281 98087281 G A SNP DNTT ENST00000371174 human ensembl 74_37 +1 known missense c.931 p.V311I 0.062 smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like - no_errors DNTT HGNC ENSG00000107447 235 1 0.423729 184 19 9.35961 ANGPTL5 0 genome.wustl.edu 37 11 101775550 101775550 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 101775550 101775550 G A SNP ANGPTL5 ENST00000334289 human ensembl 74_37 -1 known missense c.434 p.S145L 1.000 superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom - no_errors ANGPTL5 HGNC ENSG00000187151 63 0 0 59 6 9.23077 DYNC2H1 0 genome.wustl.edu 37 11 103152957 103152957 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 103152957 103152957 C T SNP DYNC2H1 ENST00000398093 human ensembl 74_37 +1 known missense c.10832 p.A3611V 1.000 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DYNC2H1 HGNC ENSG00000187240 40 0 0 33 4 10.8108 TTC12 0 genome.wustl.edu 37 11 113235630 113235630 + Silent SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 113235630 113235630 T G SNP TTC12 ENST00000314756 human ensembl 74_37 +1 known silent c.1890 p.G630 0.960 superfamily_ARM-type_fold pfam_TPR_1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors TTC12 HGNC ENSG00000149292 98 0 0 82 7 7.86517 ARHGEF12 0 genome.wustl.edu 37 11 120348905 120348905 + Missense_Mutation SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 120348905 120348905 A C SNP ARHGEF12 ENST00000356641 human ensembl 74_37 +1 known missense c.3516 p.K1172N 0.972 NULL pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain - no_errors ARHGEF12 HGNC ENSG00000196914 53 0 0 56 13 18.8406 NELL1 0 genome.wustl.edu 37 11 20948910 20948910 + Silent SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 20948910 20948910 T G SNP NELL1 ENST00000357134 human ensembl 74_37 +1 known silent c.816 p.T272 1.000 pfscan_VWF_C pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C - no_errors NELL1 HGNC ENSG00000165973 74 0 0 54 4 6.89655 NELL1 0 genome.wustl.edu 37 11 20959356 20959356 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 20959356 20959356 T G SNP NELL1 ENST00000357134 human ensembl 74_37 +1 known missense c.1022 p.V341G 1.000 smart_VWF_C pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C - no_errors NELL1 HGNC ENSG00000165973 84 0 0 59 5 7.8125 LRRC4C 0 genome.wustl.edu 37 11 40136487 40136487 + Silent SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 40136487 40136487 A T SNP LRRC4C ENST00000527150 human ensembl 74_37 -1 known silent c.1356 p.S452 0.464 NULL pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom - no_errors LRRC4C HGNC ENSG00000148948 113 0 0 109 9 7.62712 OR4A47 0 genome.wustl.edu 37 11 48511093 48511093 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 48511093 48511093 T A SNP OR4A47 ENST00000446524 human ensembl 74_37 +1 known missense c.749 p.V250D 0.901 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4A47 HGNC ENSG00000237388 155 0 0 153 14 8.38323 OR51L1 0 genome.wustl.edu 37 11 5020810 5020810 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 5020810 5020810 T C SNP OR51L1 ENST00000321543 human ensembl 74_37 +1 known missense c.598 p.Y200H 0.923 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR51L1 HGNC ENSG00000176798 78 0 0 56 9 13.8462 OR8H3 0 genome.wustl.edu 37 11 55890577 55890577 + Silent SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 55890577 55890577 T A SNP OR8H3 ENST00000313472 human ensembl 74_37 +1 known silent c.729 p.S243 0.565 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR8H3 HGNC ENSG00000181761 63 0 0 48 5 9.43396 OR8J1 0 genome.wustl.edu 37 11 56127847 56127847 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 56127847 56127847 A G SNP OR8J1 ENST00000303039 human ensembl 74_37 +1 known missense c.125 p.N42S 0.998 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR8J1 HGNC ENSG00000172487 120 0 0 111 7 5.9322 CLP1 0 genome.wustl.edu 37 11 57427134 57427134 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 57427134 57427134 G A SNP CLP1 ENST00000525602 human ensembl 74_37 +1 known silent c.186 p.K62 1.000 NULL pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase - no_errors CLP1 HGNC ENSG00000172409 53 0 0 49 3 5.76923 RBM4 0 genome.wustl.edu 37 11 66411193 66411193 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 66411193 66411193 C T SNP RBM4 ENST00000310092 human ensembl 74_37 +1 known missense c.685 p.R229W 1.000 NULL pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom - no_errors RBM4 HGNC ENSG00000173933 53 0 0 40 21 34.4262 OR10A5 0 genome.wustl.edu 37 11 6867680 6867680 + Missense_Mutation SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 6867680 6867680 C G SNP OR10A5 ENST00000379831 human ensembl 74_37 +1 known missense c.779 p.S260C 0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10A5 HGNC ENSG00000166363 167 0 0 157 9 5.42169 OR10A5 0 genome.wustl.edu 37 11 6867694 6867694 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 6867694 6867694 T G SNP OR10A5 ENST00000379831 human ensembl 74_37 +1 known missense c.793 p.F265V 0.010 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10A5 HGNC ENSG00000166363 169 0 0 158 10 5.95238 P2RY6 0 genome.wustl.edu 37 11 73008014 73008014 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 73008014 73008014 G A SNP P2RY6 ENST00000349767 human ensembl 74_37 +1 known missense c.451 p.V151M 0.996 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y6_rcpt,prints_GPCR_Rhodpsn,prints_P2Y3_rcpt,prints_Protea_act_rcpt - no_errors P2RY6 HGNC ENSG00000171631 60 0 0 58 7 10.7692 C2CD3 0 genome.wustl.edu 37 11 73844002 73844002 + Silent SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 73844002 73844002 A G SNP C2CD3 ENST00000334126 human ensembl 74_37 -1 known silent c.1104 p.S368 0.006 NULL pfam_C2_dom,superfamily_C2_dom,smart_C2_dom - no_errors C2CD3 HGNC ENSG00000168014 60 0 0 43 15 25.8621 OVCH2 0 genome.wustl.edu 37 11 7718031 7718031 + Silent SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 7718031 7718031 A T SNP OVCH2 ENST00000454689 human ensembl 74_37 -1 known silent c.1122 p.S374 0.996 pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors OVCH2 HGNC ENSG00000183378 44 0 0 42 4 8.69565 HEPHL1 0 genome.wustl.edu 37 11 93808527 93808527 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 11 93808527 93808527 C T SNP HEPHL1 ENST00000315765 human ensembl 74_37 +1 known silent c.1692 p.G564 0.000 superfamily_Cupredoxin pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin - no_errors HEPHL1 HGNC ENSG00000181333 52 0 0 48 4 7.69231 CHPT1 0 genome.wustl.edu 37 12 102117024 102117024 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 102117024 102117024 A G SNP CHPT1 ENST00000229266 human ensembl 74_37 +1 known missense c.859 p.T287A 1.000 pirsf_CHOPT pfam_CDP-OH_P_trans,pirsf_CHOPT - no_errors CHPT1 HGNC ENSG00000111666 65 0 0 35 14 28.5714 NUAK1 0 genome.wustl.edu 37 12 106464550 106464550 + Splice_Site SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 106464550 106464550 A C SNP NUAK1 ENST00000261402 human ensembl 74_37 -1 known splice_site c.832+2 e6+2 1.000 - - - no_errors NUAK1 HGNC ENSG00000074590 114 0 0 91 9 9 TMEM132D 0 genome.wustl.edu 37 12 129822217 129822217 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 129822217 129822217 T A SNP TMEM132D ENST00000422113 human ensembl 74_37 -1 known missense c.1261 p.S421C 1.000 NULL NULL - no_errors TMEM132D HGNC ENSG00000151952 211 0 0 167 17 9.23913 CASC1 0 genome.wustl.edu 37 12 25261681 25261681 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 25261681 25261681 T C SNP CASC1 ENST00000395987 human ensembl 74_37 -1 known missense c.1970 p.Q657R 0.995 prints_Casc1 pfam_Casc1_domain,prints_Casc1 - no_errors CASC1 HGNC ENSG00000118307 47 0 0 60 13 17.8082 SMARCC2 0 genome.wustl.edu 37 12 56568472 56568472 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 56568472 56568472 G A SNP SMARCC2 ENST00000267064 human ensembl 74_37 -1 known missense c.1459 p.R487C 1.000 pfam_SWIRM,superfamily_Homeodomain-like,superfamily_Chromodomain-like,pfscan_SWIRM pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom - no_errors SMARCC2 HGNC ENSG00000139613 136 0 0 117 7 5.64516 CD4 0 genome.wustl.edu 37 12 6924049 6924049 + Silent SNP G G T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 6924049 6924049 G T SNP CD4 ENST00000011653 human ensembl 74_37 +1 known silent c.498 p.G166 0.000 pfam_Ig_C2-set,smart_Ig_sub,smart_Ig_sub2 pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4 - no_errors CD4 HGNC ENSG00000010610 70 0 0 76 4 5 LRRC10 0 genome.wustl.edu 37 12 70003953 70003953 + Silent SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 70003953 70003953 A G SNP LRRC10 ENST00000361484 human ensembl 74_37 -1 known silent c.666 p.N222 1.000 NULL pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC10 HGNC ENSG00000198812 56 0 0 35 5 12.5 NAV3 0 genome.wustl.edu 37 12 78604244 78604244 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 78604244 78604244 A G SNP NAV3 ENST00000397909 human ensembl 74_37 +1 known missense c.7105 p.S2369G 1.000 NULL pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain - no_errors NAV3 HGNC ENSG00000067798 47 0 0 33 3 8.33333 IFT88 0 genome.wustl.edu 37 13 21205209 21205209 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 21205209 21205209 G C SNP IFT88 ENST00000319980 human ensembl 74_37 +1 known missense c.1381 p.A461P 1.000 smart_TPR_repeat,smart_Sel1-like,pfscan_TPR-contain_dom pfam_TPR_1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors IFT88 HGNC ENSG00000032742 99 0 0 91 7 7.14286 TRPC4 0 genome.wustl.edu 37 13 38211114 38211114 + Missense_Mutation SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 38211114 38211114 C A SNP TRPC4 ENST00000379681 human ensembl 74_37 -1 known missense c.2875 p.D959Y 0.967 NULL pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel - no_errors TRPC4 HGNC ENSG00000133107 71 0 0 79 9 10.2273 TRPC4 0 genome.wustl.edu 37 13 38211582 38211582 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 38211582 38211582 C T SNP TRPC4 ENST00000379681 human ensembl 74_37 -1 known missense c.2407 p.D803N 1.000 prints_TRPC4_channel pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel - no_errors TRPC4 HGNC ENSG00000133107 69 0 0 71 8 10.1266 ENOX1 0 genome.wustl.edu 37 13 43896599 43896599 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 43896599 43896599 G A SNP ENOX1 ENST00000261488 human ensembl 74_37 -1 known silent c.1182 p.I394 1.000 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors ENOX1 HGNC ENSG00000120658 77 0 0 40 11 21.5686 PCDH17 0 genome.wustl.edu 37 13 58298909 58298909 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 58298909 58298909 C T SNP PCDH17 ENST00000377918 human ensembl 74_37 +1 known silent c.2961 p.Y987 0.967 NULL pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH17 HGNC ENSG00000118946 62 0 0 52 3 5.45455 TDRD3 0 genome.wustl.edu 37 13 61084866 61084866 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 61084866 61084866 A T SNP TDRD3 ENST00000535286 human ensembl 74_37 +1 known missense c.1118 p.K373I 1.000 NULL pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk - no_errors TDRD3 HGNC ENSG00000083544 93 0 0 51 4 7.27273 DACH1 0 genome.wustl.edu 37 13 72440223 72440223 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 72440223 72440223 G A SNP DACH1 ENST00000359684 human ensembl 74_37 -1 known missense c.685 p.H229Y 1.000 pfam_Transform_Ski,superfamily_DNA-bd_dom_put pfam_Transform_Ski,superfamily_DNA-bd_dom_put - no_errors DACH1 HGNC ENSG00000165659 120 1 0.826446 78 8 9.30233 EDNRB 0 genome.wustl.edu 37 13 78477411 78477411 + Silent SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 78477411 78477411 C A SNP EDNRB ENST00000334286 human ensembl 74_37 -1 known silent c.681 p.V227 0.998 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt - no_errors EDNRB HGNC ENSG00000136160 191 0 0 128 13 9.21986 SLITRK1 0 genome.wustl.edu 37 13 84454439 84454439 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 13 84454439 84454439 T G SNP SLITRK1 ENST00000377084 human ensembl 74_37 -1 known missense c.1204 p.I402L 0.994 pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C - no_errors SLITRK1 HGNC ENSG00000178235 318 1 0.31348 215 19 8.11966 INF2 0 genome.wustl.edu 37 14 105180624 105180624 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 14 105180624 105180624 G A SNP INF2 ENST00000392634 human ensembl 74_37 +1 known missense c.3125 p.S1042N 0.000 NULL pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom - no_errors INF2 HGNC ENSG00000203485 11 0 0 2 2 50 NPAS3 0 genome.wustl.edu 37 14 34269031 34269031 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 14 34269031 34269031 G A SNP NPAS3 ENST00000356141 human ensembl 74_37 +1 known silent c.1518 p.A506 0.972 NULL pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom - no_errors NPAS3 HGNC ENSG00000151322 30 0 0 28 3 9.67742 KTN1 0 genome.wustl.edu 37 14 56107659 56107659 + Silent SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 14 56107659 56107659 T A SNP KTN1 ENST00000395309 human ensembl 74_37 +1 known silent c.1992 p.A664 0.996 NULL NULL - no_errors KTN1 HGNC ENSG00000126777 51 0 0 56 6 9.67742 ATP6V1D 0 genome.wustl.edu 37 14 67826414 67826414 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 14 67826414 67826414 A T SNP ATP6V1D ENST00000216442 human ensembl 74_37 -1 known missense c.2 p.M1K 1.000 NULL pfam_V_ATPase_D,tigrfam_V_ATPase_D - no_errors ATP6V1D HGNC ENSG00000100554 45 0 0 47 6 11.3208 DPF3 0 genome.wustl.edu 37 14 73140966 73140966 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 14 73140966 73140966 C T SNP DPF3 ENST00000366353 human ensembl 74_37 -1 known missense c.1018 p.A340T 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors DPF3 HGNC ENSG00000205683 24 0 0 8 4 33.3333 BCL11B 0 genome.wustl.edu 37 14 99640530 99640530 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 14 99640530 99640530 C T SNP BCL11B ENST00000357195 human ensembl 74_37 -1 known silent c.2643 p.L881 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors BCL11B HGNC ENSG00000127152 67 0 0 40 3 6.97674 MAP1A 0 genome.wustl.edu 37 15 43817620 43817620 + Missense_Mutation SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 15 43817620 43817620 C G SNP MAP1A ENST00000399453 human ensembl 74_37 +1 known missense c.3949 p.L1317V 0.981 NULL NULL - no_errors MAP1A HGNC ENSG00000166963 71 0 0 38 9 19.1489 RFX7 0 genome.wustl.edu 37 15 56387980 56387980 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 15 56387980 56387980 G C SNP RFX7 ENST00000423270 human ensembl 74_37 -1 known missense c.1946 p.P649R 0.040 NULL pfam_DNA-bd_RFX - no_errors RFX7 HGNC ENSG00000181827 65 0 0 37 8 17.7778 TLN2 0 genome.wustl.edu 37 15 63089448 63089448 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 15 63089448 63089448 G A SNP TLN2 ENST00000306829 human ensembl 74_37 +1 known silent c.6081 p.L2027 1.000 superfamily_Vinculin/catenin pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom - no_errors TLN2 HGNC ENSG00000171914 99 0 0 55 16 22.5352 MYO9A 0 genome.wustl.edu 37 15 72302748 72302748 + Missense_Mutation SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 15 72302748 72302748 A C SNP MYO9A ENST00000424560 human ensembl 74_37 -1 known missense c.1196 p.F399C 1.000 pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom - no_errors MYO9A HGNC ENSG00000066933 92 0 0 58 18 23.6842 TPSG1 0 genome.wustl.edu 37 16 1272743 1272743 + Silent SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 16 1272743 1272743 C G SNP TPSG1 ENST00000234798 human ensembl 74_37 -1 known silent c.420 p.R140 0.103 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors TPSG1 HGNC ENSG00000116176 54 0 0 44 4 8.33333 ACSM2A 0 genome.wustl.edu 37 16 20497938 20497938 + Missense_Mutation SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 16 20497938 20497938 A C SNP ACSM2A ENST00000219054 human ensembl 74_37 +1 known missense c.1672 p.I558L 0.999 NULL pfam_AMP-dep_Synth/Lig - no_errors ACSM2A HGNC ENSG00000183747 232 0 0 182 11 5.69948 ITGAM 0 genome.wustl.edu 37 16 31332822 31332822 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 16 31332822 31332822 T G SNP ITGAM ENST00000544665 human ensembl 74_37 +1 known missense c.1879 p.F627V 0.489 pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha - no_errors ITGAM HGNC ENSG00000169896 339 0 0 294 20 6.36943 ENSG00000261727 0 genome.wustl.edu 37 16 32095637 32095637 + RNA SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 16 32095637 32095637 G C SNP ENSG00000261727 ENST00000566806 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors RP11-1166P10.6 Clone_based_vega_gene ENSG00000261727 31 0 0 19 7 26.9231 C16orf71 0 genome.wustl.edu 37 16 4790653 4790653 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 16 4790653 4790653 C T SNP C16orf71 ENST00000299320 human ensembl 74_37 +1 known missense c.776 p.S259L 0.930 NULL NULL - no_errors C16orf71 HGNC ENSG00000166246 54 0 0 37 5 11.9048 PSKH1 0 genome.wustl.edu 37 16 67943234 67943234 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 16 67943234 67943234 C T SNP PSKH1 ENST00000291041 human ensembl 74_37 +1 known silent c.582 p.D194 0.915 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors PSKH1 HGNC ENSG00000159792 39 0 0 23 3 11.5385 KARS 0 genome.wustl.edu 37 16 75662592 75662592 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 16 75662592 75662592 C T SNP KARS ENST00000319410 human ensembl 74_37 -1 known missense c.1654 p.D552N 1.000 pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Lys-tRNA-ligase_II pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Lys-tRNA-synth_II_C,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-ligase_II - no_errors KARS HGNC ENSG00000065427 49 0 0 50 4 7.40741 DNAH9 0 genome.wustl.edu 37 17 11684386 11684386 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 11684386 11684386 A G SNP DNAH9 ENST00000262442 human ensembl 74_37 +1 known missense c.7613 p.K2538R 1.000 superfamily_P-loop_NTPase,smart_AAA+_ATPase pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DNAH9 HGNC ENSG00000007174 42 0 0 27 4 12.9032 SLC43A2 0 genome.wustl.edu 37 17 1489235 1489235 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 1489235 1489235 C T SNP SLC43A2 ENST00000382147 human ensembl 74_37 -1 known missense c.1201 p.E401K 0.998 superfamily_MFS_dom_general_subst_transpt pfam_MFS,superfamily_MFS_dom_general_subst_transpt - no_errors SLC43A2 HGNC ENSG00000167703 40 0 0 19 7 26.9231 RAB34 0 genome.wustl.edu 37 17 27043058 27043058 + Silent SNP G G T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 27043058 27043058 G T SNP RAB34 ENST00000447716 human ensembl 74_37 -1 known silent c.336 p.V112 1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors RAB34 HGNC ENSG00000109113 87 0 0 95 7 6.86275 MYO18A 0 genome.wustl.edu 37 17 27493224 27493224 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 27493224 27493224 G A SNP MYO18A ENST00000354329 human ensembl 74_37 -1 known silent c.735 p.P245 0.075 pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom - no_errors MYO18A HGNC ENSG00000196535 81 0 0 74 4 5.12821 EFCAB5 0 genome.wustl.edu 37 17 28418902 28418902 + Silent SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 28418902 28418902 C G SNP EFCAB5 ENST00000394835 human ensembl 74_37 +1 known silent c.3951 p.V1317 0.001 NULL pfscan_EF_hand_dom - no_errors EFCAB5 HGNC ENSG00000176927 84 0 0 41 5 10.8696 EVI2A 0 genome.wustl.edu 37 17 29646016 29646016 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 29646016 29646016 C T SNP EVI2A ENST00000247270 human ensembl 74_37 -1 known missense c.85 p.E29K 0.794 pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A - no_errors EVI2A HGNC ENSG00000126860 271 0 0 256 19 6.90909 MMD 0 genome.wustl.edu 37 17 53481221 53481221 + Missense_Mutation SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 53481221 53481221 A C SNP MMD ENST00000262065 human ensembl 74_37 -1 known missense c.353 p.L118R 1.000 pfam_HlyIII-related,tigrfam_HylIII pfam_HlyIII-related,tigrfam_HylIII - no_errors MMD HGNC ENSG00000108960 84 0 0 63 26 29.2135 ERN1 0 genome.wustl.edu 37 17 62122824 62122824 + Nonsense_Mutation SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 62122824 62122824 C A SNP ERN1 ENST00000433197 human ensembl 74_37 -1 known nonsense c.2548 p.E850* 1.000 pfam_KEN_dom,superfamily_Kinase-like_dom pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom - no_errors ERN1 HGNC ENSG00000178607 77 0 0 67 6 8.21918 TP53 0 genome.wustl.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 7577120 7577120 C T SNP TP53 ENST00000269305 human ensembl 74_37 -1 known missense c.818 p.R273H 0.864 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 21 0 0 13 6 31.5789 PFAS 0 genome.wustl.edu 37 17 8167849 8167849 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 17 8167849 8167849 G C SNP PFAS ENST00000314666 human ensembl 74_37 +1 known missense c.1979 p.S660T 0.445 superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth - no_errors PFAS HGNC ENSG00000178921 97 0 0 69 6 8 GAREM 0 genome.wustl.edu 37 18 29867375 29867375 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 18 29867375 29867375 G A SNP GAREM ENST00000269209 human ensembl 74_37 -1 known silent c.1185 p.L395 1.000 NULL superfamily_SAM/pointed - no_errors GAREM HGNC ENSG00000141441 76 0 0 67 12 15.1899 ONECUT2 0 genome.wustl.edu 37 18 55143752 55143752 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 18 55143752 55143752 C T SNP ONECUT2 ENST00000491143 human ensembl 74_37 +1 known missense c.1312 p.R438C 1.000 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT - no_errors ONECUT2 HGNC ENSG00000119547 56 0 0 46 8 14.8148 ZNF236 0 genome.wustl.edu 37 18 74607072 74607072 + Silent SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 18 74607072 74607072 C A SNP ZNF236 ENST00000253159 human ensembl 74_37 +1 known silent c.1515 p.T505 0.998 pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF236 HGNC ENSG00000130856 148 0 0 92 35 27.5591 ZNF236 0 genome.wustl.edu 37 18 74607093 74607093 + Missense_Mutation SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 18 74607093 74607093 C G SNP ZNF236 ENST00000253159 human ensembl 74_37 +1 known missense c.1536 p.C512W 0.998 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF236 HGNC ENSG00000130856 132 0 0 82 28 25.4545 ZNF844 0 genome.wustl.edu 37 19 12187443 12187443 + Missense_Mutation SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 12187443 12187443 C G SNP ZNF844 ENST00000439326 human ensembl 74_37 +1 known missense c.1508 p.P503R 0.024 NULL pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF844 HGNC ENSG00000223547 84 0 0 64 5 7.24638 CCDC130 0 genome.wustl.edu 37 19 13869729 13869729 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 13869729 13869729 C T SNP CCDC130 ENST00000221554 human ensembl 74_37 +1 known missense c.305 p.T102M 0.999 pfam_CWC16 pfam_CWC16 - no_errors CCDC130 HGNC ENSG00000104957 30 0 0 18 2 10 TPM4 0 genome.wustl.edu 37 19 16204371 16204371 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 16204371 16204371 A G SNP TPM4 ENST00000344824 human ensembl 74_37 +1 known missense c.665 p.E222G 1.000 pfam_Tropomyosin pfam_Tropomyosin,prints_Tropomyosin - no_errors TPM4 HGNC ENSG00000167460 98 0 0 74 10 11.9048 GTPBP3 0 genome.wustl.edu 37 19 17451926 17451926 + Missense_Mutation SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 17451926 17451926 C A SNP GTPBP3 ENST00000358792 human ensembl 74_37 +1 known missense c.1144 p.L382M 1.000 pfam_GTP_binding_domain,superfamily_P-loop_NTPase pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom - no_errors GTPBP3 HGNC ENSG00000130299 62 0 0 46 3 6.12245 REXO1 0 genome.wustl.edu 37 19 1816466 1816466 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 1816466 1816466 G A SNP REXO1 ENST00000170168 human ensembl 74_37 -1 known silent c.3420 p.I1140 0.946 pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease - no_errors REXO1 HGNC ENSG00000079313 40 0 0 29 5 14.7059 ZNF574 0 genome.wustl.edu 37 19 42585010 42585010 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 42585010 42585010 C T SNP ZNF574 ENST00000222339 human ensembl 74_37 +1 known missense c.2522 p.T841M 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF574 HGNC ENSG00000105732 209 0 0 141 20 12.4224 RTN2 0 genome.wustl.edu 37 19 45997476 45997476 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 45997476 45997476 C T SNP RTN2 ENST00000245923 human ensembl 74_37 -1 known silent c.762 p.Q254 0.992 NULL pfam_Reticulon,pfscan_Reticulon - no_errors RTN2 HGNC ENSG00000125744 92 0 0 91 9 9 QPCTL 0 genome.wustl.edu 37 19 46195984 46195984 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 46195984 46195984 G C SNP QPCTL ENST00000012049 human ensembl 74_37 +1 known missense c.23 p.R8P 1.000 NULL pfam_Peptidase_M28 - no_errors QPCTL HGNC ENSG00000011478 18 0 0 13 4 23.5294 FEM1A 0 genome.wustl.edu 37 19 4793212 4793212 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 4793212 4793212 G A SNP FEM1A ENST00000269856 human ensembl 74_37 +1 known missense c.1346 p.R449Q 0.984 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors FEM1A HGNC ENSG00000141965 197 0 0 133 14 9.52381 ZNF613 0 genome.wustl.edu 37 19 52447732 52447732 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 52447732 52447732 A T SNP ZNF613 ENST00000293471 human ensembl 74_37 +1 known missense c.596 p.N199I 0.674 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF613 HGNC ENSG00000176024 361 0 0 275 34 11.0032 ZNF347 0 genome.wustl.edu 37 19 53643983 53643983 + Nonsense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 53643983 53643983 G A SNP ZNF347 ENST00000452676 human ensembl 74_37 -1 known nonsense c.2101 p.Q701* 0.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF347 HGNC ENSG00000197937 147 0 0 120 12 9.09091 NLRP8 0 genome.wustl.edu 37 19 56466706 56466706 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 56466706 56466706 G A SNP NLRP8 ENST00000291971 human ensembl 74_37 +1 known missense c.1282 p.V428I 0.037 NULL pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN - no_errors NLRP8 HGNC ENSG00000179709 124 0 0 58 50 46.2963 CATSPERD 0 genome.wustl.edu 37 19 5778566 5778566 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 5778566 5778566 C T SNP CATSPERD ENST00000381624 human ensembl 74_37 +1 known missense c.2276 p.A759V 0.000 NULL superfamily_WD40_repeat_dom - no_errors CATSPERD HGNC ENSG00000174898 77 0 0 44 4 8.33333 ZNF550 0 genome.wustl.edu 37 19 58059343 58059343 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 58059343 58059343 T C SNP ZNF550 ENST00000376230 human ensembl 74_37 -1 known missense c.269 p.H90R 0.000 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF550 HGNC ENSG00000251369 128 0 0 112 14 11.1111 AFF3 0 genome.wustl.edu 37 2 100623915 100623915 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 100623915 100623915 T A SNP AFF3 ENST00000356421 human ensembl 74_37 -1 known missense c.257 p.K86M 1.000 pfam_TF_AF4/FMR2 pfam_TF_AF4/FMR2 - no_errors AFF3 HGNC ENSG00000144218 122 0 0 106 9 7.82609 RANBP2 0 genome.wustl.edu 37 2 109380603 109380603 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 109380603 109380603 G A SNP RANBP2 ENST00000283195 human ensembl 74_37 +1 known missense c.3608 p.R1203H 1.000 pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom - no_errors RANBP2 HGNC ENSG00000153201 83 0 0 91 9 9 DPP10 0 genome.wustl.edu 37 2 116548896 116548896 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 116548896 116548896 T G SNP DPP10 ENST00000393147 human ensembl 74_37 +1 known missense c.1676 p.F559C 1.000 NULL pfam_Peptidase_S9B,pfam_Peptidase_S9 - no_errors DPP10 HGNC ENSG00000175497 117 0 0 86 13 13.1313 LCT 0 genome.wustl.edu 37 2 136575081 136575081 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 136575081 136575081 C T SNP LCT ENST00000264162 human ensembl 74_37 -1 known missense c.1537 p.E513K 0.907 pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1 - no_errors LCT HGNC ENSG00000115850 57 0 0 66 5 7.04225 SPOPL 0 genome.wustl.edu 37 2 139326627 139326627 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 139326627 139326627 C T SNP SPOPL ENST00000280098 human ensembl 74_37 +1 known missense c.1156 p.R386C 1.000 NULL pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH - no_errors SPOPL HGNC ENSG00000144228 315 0 0 311 17 5.18293 ZEB2 0 genome.wustl.edu 37 2 145156214 145156214 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 145156214 145156214 T G SNP ZEB2 ENST00000303660 human ensembl 74_37 -1 known missense c.2540 p.N847T 1.000 NULL superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2 - no_errors ZEB2 HGNC ENSG00000169554 91 0 0 78 6 7.14286 GRB14 0 genome.wustl.edu 37 2 165365252 165365252 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 165365252 165365252 C T SNP GRB14 ENST00000263915 human ensembl 74_37 -1 known silent c.927 p.K309 1.000 pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2 - no_errors GRB14 HGNC ENSG00000115290 81 0 0 70 6 7.89474 WIPF1 0 genome.wustl.edu 37 2 175437098 175437098 + Silent SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 175437098 175437098 A G SNP WIPF1 ENST00000272746 human ensembl 74_37 -1 known silent c.435 p.S145 0.996 NULL smart_WH2_dom,pfscan_WH2_dom - no_errors WIPF1 HGNC ENSG00000115935 54 0 0 30 7 18.9189 HOXD10 0 genome.wustl.edu 37 2 176983843 176983843 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 176983843 176983843 G A SNP HOXD10 ENST00000249501 human ensembl 74_37 +1 known missense c.907 p.V303I 1.000 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom - no_errors HOXD10 HGNC ENSG00000128710 156 1 0.636943 89 29 24.5763 ZNF804A 0 genome.wustl.edu 37 2 185801262 185801262 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 185801262 185801262 T G SNP ZNF804A ENST00000302277 human ensembl 74_37 +1 known missense c.1139 p.V380G 0.000 NULL pfam_Znf_C2H2_jaz - no_errors ZNF804A HGNC ENSG00000170396 42 0 0 48 7 12.7273 MYT1L 0 genome.wustl.edu 37 2 1926913 1926913 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 1926913 1926913 T C SNP MYT1L ENST00000399161 human ensembl 74_37 -1 known missense c.628 p.K210E 1.000 NULL pfam_Myelin_TF,pfam_Znf_C2HC - no_errors MYT1L HGNC ENSG00000186487 42 0 0 33 4 10.8108 CDK15 0 genome.wustl.edu 37 2 202672278 202672278 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 202672278 202672278 C T SNP CDK15 ENST00000374598 human ensembl 74_37 +1 known missense c.185 p.A62V 0.035 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors CDK15 HGNC ENSG00000138395 156 0 0 107 23 17.6923 INO80D 0 genome.wustl.edu 37 2 206892937 206892937 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 206892937 206892937 C T SNP INO80D ENST00000403263 human ensembl 74_37 -1 known missense c.1196 p.R399Q 1.000 NULL NULL - no_errors INO80D HGNC ENSG00000114933 13 0 0 12 4 25 ERBB4 0 genome.wustl.edu 37 2 212251754 212251754 + Missense_Mutation SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 212251754 212251754 A C SNP ERBB4 ENST00000342788 human ensembl 74_37 -1 known missense c.3305 p.F1102C 0.992 pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors ERBB4 HGNC ENSG00000178568 104 0 0 70 6 7.89474 SMARCAL1 0 genome.wustl.edu 37 2 217279594 217279594 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 217279594 217279594 A G SNP SMARCAL1 ENST00000357276 human ensembl 74_37 +1 known missense c.167 p.N56S 0.000 NULL pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors SMARCAL1 HGNC ENSG00000138375 153 0 0 83 6 6.74157 TUBA4B 0 genome.wustl.edu 37 2 220136767 220136767 + RNA SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 220136767 220136767 C T SNP TUBA4B ENST00000490341 human ensembl 74_37 +1 known rna NULL NULL 0.373 - - - no_errors TUBA4B HGNC ENSG00000243910 41 0 0 27 4 12.9032 AAK1 0 genome.wustl.edu 37 2 69870090 69870090 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 69870090 69870090 G A SNP AAK1 ENST00000409085 human ensembl 74_37 -1 known missense c.83 p.S28L 1.000 superfamily_Kinase-like_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors AAK1 HGNC ENSG00000115977 31 0 0 26 9 25.7143 C2orf42 0 genome.wustl.edu 37 2 70377631 70377631 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 2 70377631 70377631 G C SNP C2orf42 ENST00000264434 human ensembl 74_37 -1 known missense c.1582 p.P528A 1.000 NULL NULL - no_errors C2orf42 HGNC ENSG00000115998 77 0 0 73 4 5.19481 MYH7B 0 genome.wustl.edu 37 20 33585431 33585431 + Silent SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 20 33585431 33585431 G C SNP MYH7B ENST00000262873 human ensembl 74_37 +1 novel silent c.3861 p.L1287 1.000 pfam_Myosin_tail,superfamily_Prefoldin pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH7B HGNC ENSG00000078814 51 0 0 59 5 7.8125 SEMG1 0 genome.wustl.edu 37 20 43837052 43837052 + Missense_Mutation SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 20 43837052 43837052 C A SNP SEMG1 ENST00000372781 human ensembl 74_37 +1 known missense c.1114 p.R372S 0.001 pfam_Semenogelin pfam_Semenogelin - no_errors SEMG1 HGNC ENSG00000124233 56 0 0 72 5 6.49351 ATP9A 0 genome.wustl.edu 37 20 50238633 50238633 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 20 50238633 50238633 C T SNP ATP9A ENST00000338821 human ensembl 74_37 -1 known missense c.2095 p.D699N 1.000 pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP9A HGNC ENSG00000054793 134 0 0 162 12 6.89655 LRRN4 0 genome.wustl.edu 37 20 6022187 6022187 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 20 6022187 6022187 G C SNP LRRN4 ENST00000378858 human ensembl 74_37 -1 known missense c.1704 p.C568W 0.880 NULL pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors LRRN4 HGNC ENSG00000125872 105 0 0 100 6 5.66038 KRTAP13-3 0 genome.wustl.edu 37 21 31797958 31797958 + Silent SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 21 31797958 31797958 A G SNP KRTAP13-3 ENST00000390690 human ensembl 74_37 -1 known silent c.273 p.S91 0.002 pfam_KRTAP_PMG pfam_KRTAP_PMG - no_errors KRTAP13-3 HGNC ENSG00000240432 60 0 0 48 6 11.1111 TIAM1 0 genome.wustl.edu 37 21 32493072 32493072 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 21 32493072 32493072 C T SNP TIAM1 ENST00000286827 human ensembl 74_37 -1 known missense c.4390 p.A1464T 0.236 NULL pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain - no_errors TIAM1 HGNC ENSG00000156299 122 0 0 69 12 14.8148 DSCAM 0 genome.wustl.edu 37 21 42080477 42080477 + Silent SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 21 42080477 42080477 A C SNP DSCAM ENST00000400454 human ensembl 74_37 -1 known silent c.264 p.P88 1.000 smart_Ig_sub2 pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors DSCAM HGNC ENSG00000171587 103 0 0 77 12 13.4831 TRMT2A 0 genome.wustl.edu 37 22 20103938 20103938 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 22 20103938 20103938 T C SNP TRMT2A ENST00000252136 human ensembl 74_37 -1 known silent c.222 p.K74 1.000 pfscan_RRM_dom pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom - no_errors TRMT2A HGNC ENSG00000099899 64 0 0 37 6 13.9535 IGLV11-55 0 genome.wustl.edu 37 22 22556244 22556244 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 22 22556244 22556244 C T SNP IGLV11-55 ENST00000390286 human ensembl 74_37 +1 known missense c.58 p.R20W 0.000 NULL pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom - no_errors IGLV11-55 HGNC ENSG00000211641 34 0 0 27 19 41.3043 MAPK8IP2 0 genome.wustl.edu 37 22 51045110 51045110 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 22 51045110 51045110 G A SNP MAPK8IP2 ENST00000329492 human ensembl 74_37 +1 known missense c.2146 p.V716I 0.998 pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain - no_errors MAPK8IP2 HGNC ENSG00000008735 15 0 0 9 3 25 IMPG2 0 genome.wustl.edu 37 3 100951814 100951814 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 100951814 100951814 T A SNP IMPG2 ENST00000193391 human ensembl 74_37 -1 known missense c.3044 p.K1015M 1.000 smart_SEA_dom,pfscan_EG-like_dom pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom - no_errors IMPG2 HGNC ENSG00000081148 87 0 0 77 12 13.4831 CNTN6 0 genome.wustl.edu 37 3 1269633 1269633 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 1269633 1269633 T G SNP CNTN6 ENST00000350110 human ensembl 74_37 +1 known missense c.314 p.L105R 0.882 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors CNTN6 HGNC ENSG00000134115 181 0 0 148 27 15.4286 IQSEC1 0 genome.wustl.edu 37 3 12977720 12977720 + Missense_Mutation SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 12977720 12977720 C G SNP IQSEC1 ENST00000273221 human ensembl 74_37 -1 known missense c.838 p.E280Q 1.000 NULL pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom - no_errors IQSEC1 HGNC ENSG00000144711 132 0 0 96 9 8.57143 ZFYVE20 0 genome.wustl.edu 37 3 15115837 15115837 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 15115837 15115837 G A SNP ZFYVE20 ENST00000253699 human ensembl 74_37 -1 known missense c.1807 p.P603S 0.017 NULL pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2 - no_errors ZFYVE20 HGNC ENSG00000131381 46 0 0 31 2 6.06061 BCHE 0 genome.wustl.edu 37 3 165547928 165547928 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 165547928 165547928 T G SNP BCHE ENST00000264381 human ensembl 74_37 -1 known missense c.894 p.Q298H 0.998 pfam_CarbesteraseB pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase - no_errors BCHE HGNC ENSG00000114200 69 0 0 75 10 11.7647 CNTN4 0 genome.wustl.edu 37 3 2908441 2908441 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 2908441 2908441 A G SNP CNTN4 ENST00000397461 human ensembl 74_37 +1 known missense c.460 p.S154G 1.000 smart_Ig_sub,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors CNTN4 HGNC ENSG00000144619 102 0 0 109 23 17.4242 ULK4 0 genome.wustl.edu 37 3 41938397 41938397 + Nonsense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 41938397 41938397 G A SNP ULK4 ENST00000301831 human ensembl 74_37 -1 known nonsense c.1447 p.R483* 0.943 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors ULK4 HGNC ENSG00000168038 100 0 0 80 13 13.9785 CDCP1 0 genome.wustl.edu 37 3 45132693 45132693 + Missense_Mutation SNP G G T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 45132693 45132693 G T SNP CDCP1 ENST00000296129 human ensembl 74_37 -1 known missense c.1965 p.F655L 1.000 NULL superfamily_CUB_dom - no_errors CDCP1 HGNC ENSG00000163814 82 0 0 75 4 5.06329 QRICH1 0 genome.wustl.edu 37 3 49094328 49094328 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 49094328 49094328 C T SNP QRICH1 ENST00000357496 human ensembl 74_37 -1 known silent c.1305 p.Q435 0.956 NULL pfam_DUF3504,superfamily_DEATH-like_dom - no_errors QRICH1 HGNC ENSG00000198218 57 0 0 51 3 5.55556 QRICH1 0 genome.wustl.edu 37 3 49094329 49094329 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 49094329 49094329 T G SNP QRICH1 ENST00000357496 human ensembl 74_37 -1 known missense c.1304 p.Q435P 0.948 NULL pfam_DUF3504,superfamily_DEATH-like_dom - no_errors QRICH1 HGNC ENSG00000198218 59 0 0 51 3 5.55556 ACTR8 0 genome.wustl.edu 37 3 53909990 53909990 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 53909990 53909990 G C SNP ACTR8 ENST00000335754 human ensembl 74_37 -1 known missense c.896 p.S299C 1.000 pfam_Actin-related,smart_Actin-related pfam_Actin-related,smart_Actin-related - no_errors ACTR8 HGNC ENSG00000113812 108 0 0 90 10 10 FAT4 0 genome.wustl.edu 37 4 126412149 126412149 + Silent SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 4 126412149 126412149 T A SNP FAT4 ENST00000394329 human ensembl 74_37 +1 known silent c.14172 p.P4724 0.000 NULL pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT4 HGNC ENSG00000196159 97 0 0 75 7 8.53659 ACSL1 0 genome.wustl.edu 37 4 185691577 185691577 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 4 185691577 185691577 G A SNP ACSL1 ENST00000281455 human ensembl 74_37 -1 known silent c.969 p.A323 0.998 pfam_AMP-dep_Synth/Lig pfam_AMP-dep_Synth/Lig - no_errors ACSL1 HGNC ENSG00000151726 62 0 0 73 6 7.59494 SLIT2 0 genome.wustl.edu 37 4 20618698 20618698 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 4 20618698 20618698 A T SNP SLIT2 ENST00000504154 human ensembl 74_37 +1 known missense c.4013 p.K1338M 1.000 smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors SLIT2 HGNC ENSG00000145147 38 0 0 37 3 7.5 ZBTB49 0 genome.wustl.edu 37 4 4303731 4303731 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 4 4303731 4303731 T A SNP ZBTB49 ENST00000337872 human ensembl 74_37 +1 known missense c.168 p.N56K 0.949 pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB49 HGNC ENSG00000168826 68 0 0 52 4 7.14286 LRRC66 0 genome.wustl.edu 37 4 52883456 52883456 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 4 52883456 52883456 T C SNP LRRC66 ENST00000343457 human ensembl 74_37 -1 known silent c.324 p.L108 0.000 smart_Leu-rich_rpt_typical-subtyp pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC66 HGNC ENSG00000188993 101 0 0 68 15 18.0723 PPP2R2C 0 genome.wustl.edu 37 4 6374386 6374386 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 4 6374386 6374386 G C SNP PPP2R2C ENST00000335585 human ensembl 74_37 -1 known missense c.489 p.S163R 1.000 superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55 - no_errors PPP2R2C HGNC ENSG00000074211 183 1 0.543478 123 11 8.20896 SLCO6A1 0 genome.wustl.edu 37 5 101834337 101834337 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 101834337 101834337 T C SNP SLCO6A1 ENST00000379807 human ensembl 74_37 -1 known missense c.212 p.K71R 0.000 NULL pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter - no_errors SLCO6A1 HGNC ENSG00000205359 157 0 0 79 9 10.2273 PCDHB7 0 genome.wustl.edu 37 5 140553947 140553947 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 140553947 140553947 G A SNP PCDHB7 ENST00000231137 human ensembl 74_37 +1 known missense c.1531 p.G511S 0.990 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB7 HGNC ENSG00000113212 133 0 0 112 8 6.66667 SH3PXD2B 0 genome.wustl.edu 37 5 171766824 171766824 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 171766824 171766824 T C SNP SH3PXD2B ENST00000311601 human ensembl 74_37 -1 known missense c.1285 p.S429G 1.000 superfamily_SH3_domain pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain - no_errors SH3PXD2B HGNC ENSG00000174705 49 0 0 18 5 21.7391 C6 0 genome.wustl.edu 37 5 41149516 41149516 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 41149516 41149516 T G SNP C6 ENST00000263413 human ensembl 74_37 -1 known missense c.2450 p.K817T 0.180 pfam_Kazal_dom,smart_FacI_MAC pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt - no_errors C6 HGNC ENSG00000039537 158 0 0 210 20 8.69565 ZDHHC11 0 genome.wustl.edu 37 5 837555 837555 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 837555 837555 G A SNP ZDHHC11 ENST00000283441 human ensembl 74_37 -1 known silent c.825 p.N275 0.000 NULL pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase - no_errors ZDHHC11 HGNC ENSG00000188818 202 0 0 246 13 5.01931 NBPF22P 0 genome.wustl.edu 37 5 85578690 85578690 + RNA SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 85578690 85578690 G A SNP NBPF22P ENST00000590707 human ensembl 74_37 +1 known rna NULL NULL 0.001 - - - no_errors NBPF22P HGNC ENSG00000205449 38 0 0 16 3 15.7895 PRDM13 0 genome.wustl.edu 37 6 100054924 100054924 + Missense_Mutation SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 100054924 100054924 C G SNP PRDM13 ENST00000369215 human ensembl 74_37 +1 known missense c.14 p.A5G 0.491 NULL smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2 - no_errors PRDM13 HGNC ENSG00000112238 21 0 0 11 5 31.25 FYN 0 genome.wustl.edu 37 6 112020843 112020843 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 112020843 112020843 G A SNP FYN ENST00000368678 human ensembl 74_37 -1 known missense c.728 p.T243I 1.000 pfscan_SH2 pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain - no_errors FYN HGNC ENSG00000010810 57 0 0 43 5 10.4167 CEP85L 0 genome.wustl.edu 37 6 118886759 118886759 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 118886759 118886759 T G SNP CEP85L ENST00000368488 human ensembl 74_37 -1 known missense c.962 p.Y321S 0.985 NULL NULL - no_errors CEP85L HGNC ENSG00000111860 96 0 0 81 6 6.89655 RNF217 0 genome.wustl.edu 37 6 125397989 125397989 + Nonsense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 125397989 125397989 C T SNP RNF217 ENST00000560949 human ensembl 74_37 +1 known nonsense c.763 p.R255* 1.000 NULL pfam_Znf_C6HC,smart_Znf_C6HC - no_errors RNF217 HGNC ENSG00000146373 125 0 0 114 12 9.52381 EYA4 0 genome.wustl.edu 37 6 133769263 133769263 + Missense_Mutation SNP G G T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 133769263 133769263 G T SNP EYA4 ENST00000355167 human ensembl 74_37 +1 known missense c.223 p.V75F 1.000 NULL pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA - no_errors EYA4 HGNC ENSG00000112319 53 0 0 53 4 7.01754 SYNE1 0 genome.wustl.edu 37 6 152542686 152542686 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 152542686 152542686 T G SNP SYNE1 ENST00000265368 human ensembl 74_37 -1 known missense c.21531 p.Q7177H 0.993 pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE1 HGNC ENSG00000131018 98 0 0 71 8 10.1266 HIST1H3G 0 genome.wustl.edu 37 6 26271499 26271499 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 26271499 26271499 T C SNP HIST1H3G ENST00000305910 human ensembl 74_37 -1 known silent c.114 p.K38 1.000 superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3 pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3 - no_errors HIST1H3G HGNC ENSG00000256018 88 0 0 42 31 42.4658 ZSCAN31 0 genome.wustl.edu 37 6 28294500 28294500 + Nonsense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 28294500 28294500 G A SNP ZSCAN31 ENST00000344279 human ensembl 74_37 -1 known nonsense c.664 p.R222* 0.004 NULL pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN - no_errors ZSCAN31 HGNC ENSG00000235109 69 0 0 100 7 6.54206 OR2W1 0 genome.wustl.edu 37 6 29012626 29012626 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 29012626 29012626 T C SNP OR2W1 ENST00000377175 human ensembl 74_37 -1 known silent c.327 p.S109 0.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2W1 HGNC ENSG00000204704 40 0 0 58 4 6.45161 IMPG1 0 genome.wustl.edu 37 6 76712691 76712691 + Missense_Mutation SNP A A C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 76712691 76712691 A C SNP IMPG1 ENST00000369950 human ensembl 74_37 -1 known missense c.1235 p.L412R 0.390 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom - no_errors IMPG1 HGNC ENSG00000112706 61 0 0 51 12 19.0476 DOPEY1 0 genome.wustl.edu 37 6 83806789 83806789 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 6 83806789 83806789 C T SNP DOPEY1 ENST00000349129 human ensembl 74_37 +1 known silent c.93 p.S31 1.000 pfam_Dopey_N pfam_Dopey_N,superfamily_ARM-type_fold - no_errors DOPEY1 HGNC ENSG00000083097 168 0 0 139 9 6.08108 BCAP29 0 genome.wustl.edu 37 7 107254166 107254166 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 107254166 107254166 G A SNP BCAP29 ENST00000379119 human ensembl 74_37 +1 known missense c.758 p.G253D 0.079 NULL pfam_Bap31 - no_errors BCAP29 HGNC ENSG00000075790 53 0 0 43 4 8.51064 GPER1 0 genome.wustl.edu 37 7 1132151 1132151 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 1132151 1132151 G A SNP GPER1 ENST00000297469 human ensembl 74_37 +1 known missense c.787 p.A263T 0.734 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors GPER1 HGNC ENSG00000164850 58 0 0 48 5 9.43396 THSD7A 0 genome.wustl.edu 37 7 11676533 11676533 + Missense_Mutation SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 11676533 11676533 C A SNP THSD7A ENST00000423059 human ensembl 74_37 -1 known missense c.246 p.R82S 1.000 superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt - no_errors THSD7A HGNC ENSG00000005108 169 0 0 156 9 5.45455 CTTNBP2 0 genome.wustl.edu 37 7 117432038 117432038 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 117432038 117432038 G A SNP CTTNBP2 ENST00000160373 human ensembl 74_37 -1 known silent c.1212 p.N404 0.000 NULL pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors CTTNBP2 HGNC ENSG00000077063 179 0 0 141 15 9.61538 TRA2A 0 genome.wustl.edu 37 7 23547125 23547125 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 23547125 23547125 C T SNP TRA2A ENST00000297071 human ensembl 74_37 -1 known silent c.555 p.L185 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors TRA2A HGNC ENSG00000164548 173 0 0 195 18 8.4507 GLI3 0 genome.wustl.edu 37 7 42004358 42004358 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 42004358 42004358 T G SNP GLI3 ENST00000395925 human ensembl 74_37 -1 known missense c.4313 p.N1438T 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLI3 HGNC ENSG00000106571 97 0 0 100 8 7.40741 ADCY1 0 genome.wustl.edu 37 7 45701777 45701777 + Silent SNP C C A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 45701777 45701777 C A SNP ADCY1 ENST00000297323 human ensembl 74_37 +1 known silent c.1569 p.P523 0.992 NULL pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase - no_errors ADCY1 HGNC ENSG00000164742 23 0 0 14 23 62.1622 ZPBP 0 genome.wustl.edu 37 7 50070871 50070871 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 50070871 50070871 C T SNP ZPBP ENST00000046087 human ensembl 74_37 -1 known missense c.523 p.A175T 1.000 pfam_Sp38-bd pfam_Sp38-bd,pfscan_Ig-like_dom - no_errors ZPBP HGNC ENSG00000042813 26 0 0 49 3 5.76923 ZNF479 0 genome.wustl.edu 37 7 57187980 57187980 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 57187980 57187980 T C SNP ZNF479 ENST00000331162 human ensembl 74_37 -1 known missense c.1142 p.Y381C 0.156 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF479 HGNC ENSG00000185177 44 0 0 51 4 7.27273 TBL2 0 genome.wustl.edu 37 7 72984996 72984996 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 72984996 72984996 C T SNP TBL2 ENST00000305632 human ensembl 74_37 -1 known silent c.1185 p.A395 0.008 superfamily_WD40_repeat_dom,smart_WD40_repeat pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TBL2 HGNC ENSG00000106638 42 0 0 40 5 11.1111 SEMA3D 0 genome.wustl.edu 37 7 84727149 84727149 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 84727149 84727149 A T SNP SEMA3D ENST00000284136 human ensembl 74_37 -1 known missense c.284 p.L95Q 1.000 pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom - no_errors SEMA3D HGNC ENSG00000153993 170 0 0 128 7 5.18519 ABCB1 0 genome.wustl.edu 37 7 87179355 87179355 + Nonsense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 87179355 87179355 G A SNP ABCB1 ENST00000265724 human ensembl 74_37 -1 known nonsense c.1366 p.Q456* 1.000 pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom - no_errors ABCB1 HGNC ENSG00000085563 73 0 0 50 5 9.09091 COL1A2 0 genome.wustl.edu 37 7 94039585 94039585 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 7 94039585 94039585 A T SNP COL1A2 ENST00000297268 human ensembl 74_37 +1 known missense c.1067 p.E356V 0.999 NULL pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C - no_errors COL1A2 HGNC ENSG00000164692 72 0 0 45 9 16.6667 ANGPT1 0 genome.wustl.edu 37 8 108334284 108334284 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 108334284 108334284 T G SNP ANGPT1 ENST00000517746 human ensembl 74_37 -1 known missense c.648 p.K216N 1.000 NULL pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom - no_errors ANGPT1 HGNC ENSG00000154188 47 0 0 43 7 14 TRPS1 0 genome.wustl.edu 37 8 116617214 116617214 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 116617214 116617214 T G SNP TRPS1 ENST00000395715 human ensembl 74_37 -1 known missense c.982 p.T328P 1.000 NULL pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA - no_errors TRPS1 HGNC ENSG00000104447 100 0 0 81 15 15.625 FAM83H 0 genome.wustl.edu 37 8 144812561 144812561 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 144812561 144812561 C T SNP FAM83H ENST00000388913 human ensembl 74_37 -1 known silent c.192 p.V64 1.000 pfam_DUF1669 pfam_DUF1669 - no_errors FAM83H HGNC ENSG00000180921 78 0 0 83 8 8.79121 SPATC1 0 genome.wustl.edu 37 8 145096245 145096245 + Silent SNP C C G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 145096245 145096245 C G SNP SPATC1 ENST00000377470 human ensembl 74_37 +1 known silent c.1419 p.V473 1.000 NULL NULL - no_errors SPATC1 HGNC ENSG00000186583 46 0 0 39 3 7.14286 ARHGAP39 0 genome.wustl.edu 37 8 145770695 145770695 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 145770695 145770695 T A SNP ARHGAP39 ENST00000377307 human ensembl 74_37 -1 known missense c.2459 p.K820M 1.000 pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom - no_errors ARHGAP39 HGNC ENSG00000147799 71 0 0 63 6 8.69565 NRG1 0 genome.wustl.edu 37 8 32599561 32599561 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 32599561 32599561 A G SNP NRG1 ENST00000338921 human ensembl 74_37 +1 known missense c.668 p.E223G 1.000 NULL pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin - no_errors NRG1 HGNC ENSG00000157168 64 0 0 45 4 8.16327 PREX2 0 genome.wustl.edu 37 8 68931899 68931899 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 68931899 68931899 T C SNP PREX2 ENST00000288368 human ensembl 74_37 +1 known missense c.329 p.L110P 1.000 pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain - no_errors PREX2 HGNC ENSG00000046889 37 0 0 26 4 13.3333 PREX2 0 genome.wustl.edu 37 8 69069612 69069612 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 69069612 69069612 T C SNP PREX2 ENST00000288368 human ensembl 74_37 +1 known silent c.4287 p.F1429 1.000 NULL pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain - no_errors PREX2 HGNC ENSG00000046889 81 0 0 63 6 8.69565 TPD52 0 genome.wustl.edu 37 8 80954873 80954873 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 80954873 80954873 T C SNP TPD52 ENST00000537855 human ensembl 74_37 -1 known silent c.537 p.E179 1.000 pfam_TPD52 pfam_TPD52,pfam_Ribosomal_S28_mit,superfamily_NA-bd_OB-fold - no_errors TPD52 HGNC ENSG00000076554 55 0 0 52 4 7.14286 CNBD1 0 genome.wustl.edu 37 8 88365898 88365898 + Missense_Mutation SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 88365898 88365898 T C SNP CNBD1 ENST00000518476 human ensembl 74_37 +1 known missense c.1187 p.L396P 0.229 pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom - no_errors CNBD1 HGNC ENSG00000176571 49 0 0 34 5 12.8205 KIAA1429 0 genome.wustl.edu 37 8 95539023 95539023 + Silent SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 8 95539023 95539023 G A SNP KIAA1429 ENST00000297591 human ensembl 74_37 -1 known silent c.1449 p.I483 0.931 NULL superfamily_ARM-type_fold - no_errors KIAA1429 HGNC ENSG00000164944 78 0 0 53 13 19.697 GPR21 0 genome.wustl.edu 37 9 125796920 125796920 + Silent SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 9 125796920 125796920 C T SNP GPR21 ENST00000373642 human ensembl 74_37 +1 known silent c.75 p.V25 0.841 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors GPR21 HGNC ENSG00000188394 117 0 0 107 8 6.95652 DDX31 0 genome.wustl.edu 37 9 135505739 135505739 + Missense_Mutation SNP C C T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 9 135505739 135505739 C T SNP DDX31 ENST00000372159 human ensembl 74_37 -1 known missense c.1858 p.A620T 1.000 pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX31 HGNC ENSG00000125485 141 0 0 81 9 10 PNPLA7 0 genome.wustl.edu 37 9 140438250 140438250 + Missense_Mutation SNP G G T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 9 140438250 140438250 G T SNP PNPLA7 ENST00000406427 human ensembl 74_37 -1 known missense c.291 p.N97K 0.014 NULL pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom - no_errors PNPLA7 HGNC ENSG00000130653 73 0 0 64 4 5.88235 SLC24A2 0 genome.wustl.edu 37 9 19786062 19786062 + Missense_Mutation SNP A A T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 9 19786062 19786062 A T SNP SLC24A2 ENST00000341998 human ensembl 74_37 -1 known missense c.803 p.L268H 0.946 pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger - no_errors SLC24A2 HGNC ENSG00000155886 64 0 0 40 9 18.3673 FOCAD 0 genome.wustl.edu 37 9 20916932 20916932 + Missense_Mutation SNP G G T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 9 20916932 20916932 G T SNP FOCAD ENST00000338382 human ensembl 74_37 +1 known missense c.2848 p.A950S 1.000 superfamily_ARM-type_fold pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold - no_errors FOCAD HGNC ENSG00000188352 32 0 0 28 2 6.66667 PTPRD 0 genome.wustl.edu 37 9 8521544 8521544 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 9 8521544 8521544 G A SNP PTPRD ENST00000356435 human ensembl 74_37 -1 known missense c.694 p.R232C 1.000 NULL pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRD HGNC ENSG00000153707 75 0 0 69 13 15.8537 MAGEC1 0 genome.wustl.edu 37 X 140996300 140996300 + Missense_Mutation SNP T T A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e X 140996300 140996300 T A SNP MAGEC1 ENST00000285879 human ensembl 74_37 +1 known missense c.3110 p.F1037Y 0.024 pfam_MAGE,pfscan_MAGE pfam_MAGE,pfscan_MAGE - no_errors MAGEC1 HGNC ENSG00000155495 45 0 0 47 7 12.963 MAGEC2 0 genome.wustl.edu 37 X 141291458 141291458 + Missense_Mutation SNP A A G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e X 141291458 141291458 A G SNP MAGEC2 ENST00000247452 human ensembl 74_37 -1 known missense c.316 p.S106P 0.002 pfam_Melanoma_ass_antigen_N pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE - no_errors MAGEC2 HGNC ENSG00000046774 25 0 0 31 3 8.82353 ATP6AP1 0 genome.wustl.edu 37 X 153664188 153664188 + Missense_Mutation SNP G G A TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e X 153664188 153664188 G A SNP ATP6AP1 ENST00000369762 human ensembl 74_37 +1 known missense c.1364 p.R455H 1.000 NULL pfam_BIG/ATPase_V1_suS1 - no_errors ATP6AP1 HGNC ENSG00000071553 161 0 0 147 18 10.9091 MAGEB6 0 genome.wustl.edu 37 X 26212113 26212113 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e X 26212113 26212113 T C SNP MAGEB6 ENST00000379034 human ensembl 74_37 +1 known silent c.150 p.G50 0.000 pfam_Melanoma_ass_antigen_N pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE - no_errors MAGEB6 HGNC ENSG00000176746 39 0 0 32 6 15.7895 PAGE4 0 genome.wustl.edu 37 X 49597160 49597160 + Missense_Mutation SNP G G C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e X 49597160 49597160 G C SNP PAGE4 ENST00000218068 human ensembl 74_37 +1 known missense c.199 p.D67H 0.002 pfam_GAGE pfam_GAGE - no_errors PAGE4 HGNC ENSG00000101951 17 0 0 33 5 13.1579 KLHL4 0 genome.wustl.edu 37 X 86924353 86924353 + Missense_Mutation SNP T T G TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e X 86924353 86924353 T G SNP KLHL4 ENST00000373114 human ensembl 74_37 +1 known missense c.2122 p.F708V 0.003 smart_Kelch_1 pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like - no_errors KLHL4 HGNC ENSG00000102271 33 0 0 26 9 25.7143 PCDH11X 0 genome.wustl.edu 37 X 91131794 91131794 + Silent SNP T T C TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e X 91131794 91131794 T C SNP PCDH11X ENST00000373094 human ensembl 74_37 +1 known silent c.555 p.F185 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH11X HGNC ENSG00000102290 29 0 0 32 6 15.7895 PTHLH 0 genome.wustl.edu 37 12 28114898 28114898 + Frame_Shift_Del DEL T T - TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 28114898 28114898 T - DEL PTHLH ENST00000354417 human ensembl 74_37 -1 known frame_shift_del c.557 p.K186fs 0.135 NULL pfam_PTH/PTH-rel,smart_PTH/PTH-rel - no_errors PTHLH HGNC ENSG00000087494 8 0 0 16 2 11.1111 GRASP 0 genome.wustl.edu 37 12 52409005 52409008 + RNA DEL TATT TATT - TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 TATT TATT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 12 52409005 52409008 TATT - DEL GRASP ENST00000552963 human ensembl 74_37 +1 known rna NULL NULL 0.950:0.992:0.999:1.000 - - - no_errors GRASP HGNC ENSG00000161835 33 0 0 21 2 8.69565 EPOR 0 genome.wustl.edu 37 19 11488878 11488883 + In_Frame_Del DEL GCAAGA GCAAGA - TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 GCAAGA GCAAGA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 19 11488878 11488883 GCAAGA - DEL EPOR ENST00000222139 human ensembl 74_37 -1 known in_frame_del c.1309_1304 p.LL435in_frame_del 0.749:0.766:0.740:0.718:0.760:0.856 pirsf_Erythropoietin_rcpt pirsf_Erythropoietin_rcpt,pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors EPOR HGNC ENSG00000187266 58 0 0 21 7 25 MIR644A 0 genome.wustl.edu 37 20 33054129 33054130 + RNA INS - - T TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 20 33054129 33054130 - T INS MIR644A ENST00000385262 human ensembl 74_37 +1 known rna NULL NULL 0.024:0.030 - - - no_errors MIR644A HGNC ENSG00000207997 11 0 0 17 4 19.0476 GOLGA4 0 genome.wustl.edu 37 3 37360697 37360697 + RNA DEL T T - TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 3 37360697 37360697 T - DEL GOLGA4 ENST00000435830 human ensembl 74_37 +1 known rna NULL NULL 0.005 - - - no_errors GOLGA4 HGNC ENSG00000144674 52 0 0 39 4 9.30233 USP38 0 genome.wustl.edu 37 4 144135153 144135153 + Frame_Shift_Del DEL A A - TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 4 144135153 144135153 A - DEL USP38 ENST00000307017 human ensembl 74_37 +1 known frame_shift_del c.2024 p.T677fs 0.991 pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 - no_errors USP38 HGNC ENSG00000170185 134 0 0 116 26 18.3099 PCDHAC1 0 genome.wustl.edu 37 5 140306935 140306936 + In_Frame_Ins INS - - GGG TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 140306935 140306936 - GGG INS PCDHAC1 ENST00000253807 human ensembl 74_37 +1 known in_frame_ins c.458_459 p.155in_frame_insG 0.997:0.984 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHAC1 HGNC ENSG00000248383 138 0 0 72 18 20 SPINK5 0 genome.wustl.edu 37 5 147499875 147499875 + Frame_Shift_Del DEL A A - TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 5 147499875 147499875 A - DEL SPINK5 ENST00000359874 human ensembl 74_37 +1 known frame_shift_del c.2459 p.K823fs 0.998 pfam_Kazal_dom,smart_Kazal_dom pfam_Kazal_dom,smart_Kazal_dom - no_errors SPINK5 HGNC ENSG00000133710 26 0 0 20 4 16.6667 CDK5RAP2 0 genome.wustl.edu 37 9 123205914 123205915 + In_Frame_Ins INS - - TGC TCGA-BR-7901-01A-11D-2201-08 TCGA-BR-7901-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1 bf460fea-4897-4f6b-a171-649f443ff56e 9 123205914 123205915 - TGC INS CDK5RAP2 ENST00000349780 human ensembl 74_37 -1 known in_frame_ins c.3132_3131 p.1045in_frame_insQ 0.010:0.703 NULL pfam_Spindle_assoc - no_errors CDK5RAP2 HGNC ENSG00000136861 168 0 0 116 43 27.044