Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ADAMTSL4	0	genome.wustl.edu	37	1	150531579	150531579	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	1	150531579	150531579	C	T	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	missense	c.2770	p.R924C	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				40	0	0	26	2	7.14286
HSD17B7P2	0	genome.wustl.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	10	38654432	38654432	A	G	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				80	0	0	74	4	5.12821
KRT8	0	genome.wustl.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	12	53298699	53298699	G	A	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	missense	c.67	p.R23C	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				37	0	0	32	4	11.1111
MMP14	0	genome.wustl.edu	37	14	23315134	23315134	+	Silent	SNP	C	C	A			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	14	23315134	23315134	C	A	SNP	MMP14	ENST00000311852	human	ensembl	74_37	+1	known	silent	c.1635	p.P545	0.047	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP14	HGNC	ENSG00000157227				17	0	0	30	3	9.09091
POLR2A	0	genome.wustl.edu	37	17	7411625	7411625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	17	7411625	7411625	C	T	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	missense	c.3296	p.A1099V	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				44	0	0	32	3	8.57143
HDX	0	genome.wustl.edu	37	X	83723683	83723683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	X	83723683	83723683	G	A	SNP	HDX	ENST00000297977	human	ensembl	74_37	-1	known	missense	c.1048	p.P350S	0.479	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HDX	HGNC	ENSG00000165259				42	0	0	35	2	5.40541
SCN4A	0	genome.wustl.edu	37	17	62029035	62029052	+	In_Frame_Del	DEL	CAGCCTCCCCGGCCCCGT	CAGCCTCCCCGGCCCCGT	-			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	CAGCCTCCCCGGCCCCGT	CAGCCTCCCCGGCCCCGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	17	62029035	62029052	CAGCCTCCCCGGCCCCGT	-	DEL	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	in_frame_del	c.2602_2585	p.DGAGEA862in_frame_del	0.008:0.005:0.250:0.361:0.282:0.266:0.235:0.003:0.005:0.178:0.123:0.161:0.177:0.124:0.135:0.124:0.015:0.012	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				10	0	0	12	4	25
UHRF1	0	genome.wustl.edu	37	19	4960949	4960949	+	RNA	DEL	T	T	-			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	19	4960949	4960949	T	-	DEL	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.404	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				8	0	0	6	3	33.3333
HLA-V	0	genome.wustl.edu	37	6	29760353	29760373	+	RNA	DEL	GCGGGCGCCGTGGATGGAGCA	GCGGGCGCCGTGGATGGAGCA	-			TCGA-BR-6710-01A-11D-1882-08	TCGA-BR-6710-10A-01D-1882-08	GCGGGCGCCGTGGATGGAGCA	GCGGGCGCCGTGGATGGAGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9ac26947-8faf-433c-bc25-025d9a45c055	d0a9ab78-b60a-427b-8e96-c761aecea65d	6	29760353	29760373	GCGGGCGCCGTGGATGGAGCA	-	DEL	HLA-V	ENST00000446817	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991:0.990:0.990:0.987:0.989:0.988:0.988:0.988:0.990:0.993:0.996:0.997:0.996:0.993:0.998:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	HLA-V	HGNC	ENSG00000181126				8	0	0	4	2	33.3333