Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF ENSG00000203849 0 genome.wustl.edu 37 1 142635984 142635984 + RNA SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 1 142635984 142635984 G A SNP ENSG00000203849 ENST00000369381 human ensembl 74_37 -1 known rna NULL NULL 0.052 - - - no_errors RP11-417J8.6 Clone_based_vega_gene ENSG00000203849 9 0 0 3 3 50 KIRREL 0 genome.wustl.edu 37 1 158045982 158045982 + Silent SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 1 158045982 158045982 G A SNP KIRREL ENST00000368173 human ensembl 74_37 +1 known silent c.132 p.L44 1.000 pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors KIRREL HGNC ENSG00000183853 39 0 0 42 21 33.3333 PLXNA2 0 genome.wustl.edu 37 1 208216499 208216499 + Missense_Mutation SNP G G C TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 1 208216499 208216499 G C SNP PLXNA2 ENST00000367033 human ensembl 74_37 -1 known missense c.3924 p.D1308E 1.000 NULL pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom - no_errors PLXNA2 HGNC ENSG00000076356 56 0 0 71 21 22.8261 CAMTA1 0 genome.wustl.edu 37 1 7725006 7725006 + Missense_Mutation SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 1 7725006 7725006 G A SNP CAMTA1 ENST00000303635 human ensembl 74_37 +1 known missense c.2399 p.S800N 0.004 NULL pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS - no_errors CAMTA1 HGNC ENSG00000171735 101 1 0.980392 6 64 91.4286 CWF19L1 0 genome.wustl.edu 37 10 102006563 102006563 + Missense_Mutation SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 10 102006563 102006563 G A SNP CWF19L1 ENST00000354105 human ensembl 74_37 -1 known missense c.838 p.L280F 0.013 NULL pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like - no_errors CWF19L1 HGNC ENSG00000095485 52 0 0 24 21 46.6667 C10orf54 0 genome.wustl.edu 37 10 73521610 73521610 + Missense_Mutation SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 10 73521610 73521610 G A SNP C10orf54 ENST00000394957 human ensembl 74_37 -1 known missense c.256 p.R86C 1.000 pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom - no_errors C10orf54 HGNC ENSG00000107738 33 0 0 44 6 12 ITIH5 0 genome.wustl.edu 37 10 7608308 7608308 + Missense_Mutation SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 10 7608308 7608308 G A SNP ITIH5 ENST00000256861 human ensembl 74_37 -1 known missense c.2212 p.R738C 1.000 pfam_ITI_HC_C pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A - no_errors ITIH5 HGNC ENSG00000123243 44 0 0 32 23 41.8182 RNLS 0 genome.wustl.edu 37 10 90341418 90341418 + Silent SNP C C T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 10 90341418 90341418 C T SNP RNLS ENST00000331772 human ensembl 74_37 -1 known silent c.273 p.S91 0.972 NULL pfam_Amino_oxidase - no_errors RNLS HGNC ENSG00000184719 54 0 0 21 9 30 PHLDA2 0 genome.wustl.edu 37 11 2950367 2950367 + Missense_Mutation SNP G G T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 11 2950367 2950367 G T SNP PHLDA2 ENST00000314222 human ensembl 74_37 -1 known missense c.228 p.D76E 1.000 pfam_Pleckstrin_homology,smart_Pleckstrin_homology pfam_Pleckstrin_homology,smart_Pleckstrin_homology - no_errors PHLDA2 HGNC ENSG00000181649 18 0 0 2 10 83.3333 PAMR1 0 genome.wustl.edu 37 11 35513643 35513643 + Missense_Mutation SNP C C G TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 11 35513643 35513643 C G SNP PAMR1 ENST00000278360 human ensembl 74_37 -1 known missense c.329 p.G110A 1.000 smart_EG-like_dom pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1 - no_errors PAMR1 HGNC ENSG00000149090 263 1 0.378788 47 71 60.1695 TMEM126B 0 genome.wustl.edu 37 11 85347202 85347202 + Missense_Mutation SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 11 85347202 85347202 G A SNP TMEM126B ENST00000358867 human ensembl 74_37 +1 known missense c.622 p.G208R 0.980 pfam_DUF1370_TMEM126 pfam_DUF1370_TMEM126 - no_errors TMEM126B HGNC ENSG00000171204 61 0 0 2 18 90 BTBD11 0 genome.wustl.edu 37 12 108004034 108004034 + Missense_Mutation SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 12 108004034 108004034 G A SNP BTBD11 ENST00000280758 human ensembl 74_37 +1 known missense c.1711 p.D571N 1.000 NULL pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like - no_errors BTBD11 HGNC ENSG00000151136 113 0 0 103 11 9.64912 ZBTB39 0 genome.wustl.edu 37 12 57397688 57397688 + Silent SNP C C T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 12 57397688 57397688 C T SNP ZBTB39 ENST00000300101 human ensembl 74_37 -1 known silent c.1014 p.R338 0.977 NULL pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB39 HGNC ENSG00000166860 154 0 0 79 59 42.7536 SPRED1 0 genome.wustl.edu 37 15 38643405 38643405 + Missense_Mutation SNP A A T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 15 38643405 38643405 A T SNP SPRED1 ENST00000299084 human ensembl 74_37 +1 known missense c.875 p.Y292F 1.000 NULL pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1 - no_errors SPRED1 HGNC ENSG00000166068 94 0 0 10 33 76.7442 STX4 0 genome.wustl.edu 37 16 31051116 31051116 + Missense_Mutation SNP G G T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 16 31051116 31051116 G T SNP STX4 ENST00000313843 human ensembl 74_37 +1 known missense c.886 p.V296F 0.000 NULL pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom - no_errors STX4 HGNC ENSG00000103496 145 0 0 85 5 5.55556 FTO 0 genome.wustl.edu 37 16 53913791 53913791 + Silent SNP C C T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 16 53913791 53913791 C T SNP FTO ENST00000471389 human ensembl 74_37 +1 known silent c.1011 p.R337 0.994 NULL NULL - no_errors FTO HGNC ENSG00000140718 122 0 0 1 33 97.0588 USP7 0 genome.wustl.edu 37 16 9009114 9009114 + Missense_Mutation SNP T T A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 16 9009114 9009114 T A SNP USP7 ENST00000344836 human ensembl 74_37 -1 known missense c.1075 p.N359Y 1.000 pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67 - no_errors USP7 HGNC ENSG00000187555 64 0 0 26 4 13.3333 LRRC46 0 genome.wustl.edu 37 17 45913414 45913414 + Missense_Mutation SNP G G C TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 17 45913414 45913414 G C SNP LRRC46 ENST00000269025 human ensembl 74_37 +1 known missense c.398 p.S133T 1.000 NULL pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC46 HGNC ENSG00000141294 29 0 0 15 11 42.3077 MED13 0 genome.wustl.edu 37 17 60140634 60140634 + Missense_Mutation SNP T T A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 17 60140634 60140634 T A SNP MED13 ENST00000397786 human ensembl 74_37 -1 known missense c.95 p.K32I 1.000 pfam_Mediator_Med13_N_met/fun pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun - no_errors MED13 HGNC ENSG00000108510 102 1 0.970874 39 45 53.5714 RNF213 0 genome.wustl.edu 37 17 78282871 78282871 + Missense_Mutation SNP A A C TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 17 78282871 78282871 A C SNP RNF213 ENST00000582970 human ensembl 74_37 +1 known missense c.2555 p.H852P 0.325 NULL superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF213 HGNC ENSG00000173821 122 0 0 84 11 11.5789 NCAN 0 genome.wustl.edu 37 19 19338422 19338422 + Missense_Mutation SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 19 19338422 19338422 G A SNP NCAN ENST00000252575 human ensembl 74_37 +1 known missense c.1993 p.A665T 0.000 NULL pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII - no_errors NCAN HGNC ENSG00000130287 66 0 0 42 49 53.8462 RBM42 0 genome.wustl.edu 37 19 36128233 36128233 + Missense_Mutation SNP C C T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 19 36128233 36128233 C T SNP RBM42 ENST00000262633 human ensembl 74_37 +1 known missense c.1309 p.R437C 0.987 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RBM42 HGNC ENSG00000126254 41 0 0 67 4 5.6338 UHRF1 0 genome.wustl.edu 37 19 4930825 4930825 + RNA SNP C C A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 19 4930825 4930825 C A SNP UHRF1 ENST00000262952 human ensembl 74_37 +1 known rna NULL NULL 0.977 - - - no_errors UHRF1 HGNC ENSG00000034063 28 0 0 24 3 11.1111 ZNF534 0 genome.wustl.edu 37 19 52941686 52941686 + Missense_Mutation SNP C C A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 19 52941686 52941686 C A SNP ZNF534 ENST00000332323 human ensembl 74_37 +1 known missense c.1012 p.P338T 1.000 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF534 HGNC ENSG00000198633 23 0 0 14 10 41.6667 MUC16 0 genome.wustl.edu 37 19 9085666 9085666 + Missense_Mutation SNP G G T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 19 9085666 9085666 G T SNP MUC16 ENST00000397910 human ensembl 74_37 -1 known missense c.6149 p.S2050Y 0.067 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom - no_errors MUC16 HGNC ENSG00000181143 186 0 0 88 59 40.1361 BUB1 0 genome.wustl.edu 37 2 111419292 111419292 + Missense_Mutation SNP C C A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 2 111419292 111419292 C A SNP BUB1 ENST00000302759 human ensembl 74_37 -1 known missense c.1084 p.V362F 0.000 NULL pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom - no_errors BUB1 HGNC ENSG00000169679 83 0 0 46 37 44.5783 ST3GAL5 0 genome.wustl.edu 37 2 86075089 86075089 + Missense_Mutation SNP T T C TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 2 86075089 86075089 T C SNP ST3GAL5 ENST00000377332 human ensembl 74_37 -1 known missense c.557 p.H186R 0.997 pfam_Glyco_trans_29,pirsf_Sialyl_trans pfam_Glyco_trans_29,pirsf_Sialyl_trans - no_errors ST3GAL5 HGNC ENSG00000115525 182 0 0 103 40 27.972 FRG1B 0 genome.wustl.edu 37 20 29625971 29625971 + Missense_Mutation SNP C C A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 20 29625971 29625971 C A SNP FRG1B ENST00000278882 human ensembl 74_37 +1 known missense c.215 p.P72Q 1.000 pfam_FRG1,superfamily_Actin_cross-linking pfam_FRG1,superfamily_Actin_cross-linking - no_errors FRG1B HGNC ENSG00000149531 176 1 0.564972 126 7 5.26316 APCDD1L 0 genome.wustl.edu 37 20 57045664 57045664 + Splice_Site SNP C C A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 20 57045664 57045664 C A SNP APCDD1L ENST00000439429 human ensembl 74_37 -1 known splice_site c.221+1 e2+1 1.000 - - - no_errors APCDD1L HGNC ENSG00000198768 12 0 0 25 3 10.7143 IGHV1OR21-1 0 genome.wustl.edu 37 21 10862639 10862639 + Missense_Mutation SNP G G T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 21 10862639 10862639 G T SNP IGHV1OR21-1 ENST00000559480 human ensembl 74_37 +1 known missense c.18 p.R6S 0.000 NULL pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom - no_errors IGHV1OR21-1 HGNC ENSG00000169861 497 0 0 336 45 11.811 DSCR10 0 genome.wustl.edu 37 21 39580370 39580370 + RNA SNP C C A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 21 39580370 39580370 C A SNP DSCR10 ENST00000432141 human ensembl 74_37 +1 known rna NULL NULL 0.004 - - - no_errors DSCR10 HGNC ENSG00000233316 166 0 0 84 66 44 POM121L9P 0 genome.wustl.edu 37 22 24659512 24659512 + RNA SNP A A G TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 22 24659512 24659512 A G SNP POM121L9P ENST00000414583 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors POM121L9P HGNC ENSG00000128262 18 0 0 16 3 15.7895 LMOD3 0 genome.wustl.edu 37 3 69168781 69168781 + Missense_Mutation SNP T T A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 3 69168781 69168781 T A SNP LMOD3 ENST00000420581 human ensembl 74_37 -1 known missense c.725 p.D242V 1.000 NULL pfam_Tropomodulin - no_errors LMOD3 HGNC ENSG00000163380 132 1 0.75188 109 8 6.83761 LMOD3 0 genome.wustl.edu 37 3 69168783 69168783 + Silent SNP C C A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 3 69168783 69168783 C A SNP LMOD3 ENST00000420581 human ensembl 74_37 -1 known silent c.723 p.L241 0.991 NULL pfam_Tropomodulin - no_errors LMOD3 HGNC ENSG00000163380 133 0 0 110 7 5.98291 BAI3 0 genome.wustl.edu 37 6 70064152 70064152 + Silent SNP A A C TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 6 70064152 70064152 A C SNP BAI3 ENST00000370598 human ensembl 74_37 +1 known silent c.3487 p.R1163 1.000 NULL pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like - no_errors BAI3 HGNC ENSG00000135298 120 1 0.826446 15 29 65.9091 TAF1L 0 genome.wustl.edu 37 9 32631710 32631710 + Missense_Mutation SNP C C T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 9 32631710 32631710 C T SNP TAF1L ENST00000242310 human ensembl 74_37 -1 known missense c.3868 p.G1290R 1.000 pirsf_TAF1_animal pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain - no_errors TAF1L HGNC ENSG00000122728 159 0 0 79 62 43.9716 KIAA2026 0 genome.wustl.edu 37 9 5922218 5922218 + Missense_Mutation SNP C C T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 9 5922218 5922218 C T SNP KIAA2026 ENST00000399933 human ensembl 74_37 -1 novel missense c.3778 p.A1260T 0.002 NULL superfamily_Bromodomain - no_errors KIAA2026 HGNC ENSG00000183354 59 0 0 40 7 14.8936 AGTPBP1 0 genome.wustl.edu 37 9 88193991 88193991 + Silent SNP G G A TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 9 88193991 88193991 G A SNP AGTPBP1 ENST00000376109 human ensembl 74_37 -1 known silent c.3222 p.S1074 1.000 pfam_Peptidase_M14 pfam_Peptidase_M14,superfamily_ARM-type_fold - no_errors AGTPBP1 HGNC ENSG00000135049 55 0 0 33 2 5.71429 MED12 0 genome.wustl.edu 37 X 70349258 70349258 + Missense_Mutation SNP C C T TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 X 70349258 70349258 C T SNP MED12 ENST00000333646 human ensembl 74_37 +1 known missense c.3670 p.L1224F 1.000 NULL pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12 - no_errors MED12 HGNC ENSG00000184634 17 0 0 1 15 93.75 SPHKAP 0 genome.wustl.edu 37 2 228886570 228886571 + Frame_Shift_Ins INS - - CCAG TCGA-BR-4294-01A-01D-1126-08 TCGA-BR-4294-11A-01D-1126-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq cb82319e-a676-4d80-b3e6-95f29d9266b3 5afac6e7-55d3-49a2-89e4-6509ed424a83 2 228886570 228886571 - CCAG INS SPHKAP ENST00000392056 human ensembl 74_37 -1 known frame_shift_ins c.554_553 p.V185fs 0.962:1.000 NULL pfam_AKAP_110_C - no_errors SPHKAP HGNC ENSG00000153820 102 0 0 68 7 9.33333