Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
MTOR	0	genome.wustl.edu	37	1	11204807	11204807	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	11204807	11204807	C	G	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.4770	p.M1590I	1.000	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				74	0	0	36	3	7.69231
ENSG00000203849	0	genome.wustl.edu	37	1	142621039	142621039	+	RNA	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	142621039	142621039	C	T	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				23	0	0	22	4	15.3846
CA14	0	genome.wustl.edu	37	1	150234696	150234696	+	Silent	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	150234696	150234696	A	C	SNP	CA14	ENST00000369111	human	ensembl	74_37	+1	known	silent	c.396	p.A132	0.995	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298				159	1	0.625	94	63	40.1274
ADAMTSL4	0	genome.wustl.edu	37	1	150529980	150529980	+	Silent	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	150529980	150529980	C	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	silent	c.2127	p.R709	0.999	superfamily_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				22	0	0	19	2	9.52381
CLK2	0	genome.wustl.edu	37	1	155235680	155235680	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	155235680	155235680	C	G	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	missense	c.904	p.D302H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				139	0	0	146	42	22.3404
KIRREL	0	genome.wustl.edu	37	1	158064804	158064804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	158064804	158064804	C	T	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	missense	c.2216	p.A739V	0.982	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853				32	0	0	15	8	34.7826
DARC	0	genome.wustl.edu	37	1	159176045	159176045	+	Silent	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	159176045	159176045	G	T	SNP	DARC	ENST00000368121	human	ensembl	74_37	+1	known	silent	c.822	p.L274	0.000	NULL	prints_Duffy_chemokine_rcpt	-	no_errors	DARC	HGNC	ENSG00000213088				157	0	0	147	55	27.2277
RNPEP	0	genome.wustl.edu	37	1	201965357	201965357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	201965357	201965357	G	A	SNP	RNPEP	ENST00000295640	human	ensembl	74_37	+1	known	missense	c.820	p.G274R	0.992	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393				178	0	0	188	58	23.5772
PGBD5	0	genome.wustl.edu	37	1	230498095	230498095	+	Silent	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	230498095	230498095	C	T	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	silent	c.345	p.E115	0.016	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				21	0	0	18	28	60.8696
CLIC4	0	genome.wustl.edu	37	1	25153587	25153587	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	25153587	25153587	C	G	SNP	CLIC4	ENST00000374379	human	ensembl	74_37	+1	known	nonsense	c.395	p.S132*	1.000	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC4	HGNC	ENSG00000169504				111	0	0	23	47	67.1429
ZMYM6	0	genome.wustl.edu	37	1	35452793	35452793	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	35452793	35452793	T	C	SNP	ZMYM6	ENST00000357182	human	ensembl	74_37	-1	known	missense	c.3890	p.K1297R	1.000	NULL	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				61	0	0	16	19	54.2857
GJA9	0	genome.wustl.edu	37	1	39341225	39341225	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	39341225	39341225	G	C	SNP	GJA9	ENST00000357771	human	ensembl	74_37	-1	known	missense	c.546	p.H182Q	0.992	pfam_Connexin_CCC	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233				97	0	0	31	44	58.6667
IL23R	0	genome.wustl.edu	37	1	67724851	67724851	+	RNA	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	67724851	67724851	A	C	SNP	IL23R	ENST00000473881	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL23R	HGNC	ENSG00000162594				27	0	0	26	16	38.0952
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74664041	74664041	+	Silent	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	74664041	74664041	A	C	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	silent	c.118	p.R40	0.916	NULL	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				28	0	0	25	11	30.5556
ZNHIT6	0	genome.wustl.edu	37	1	86123656	86123656	+	Splice_Site	SNP	T	T	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	1	86123656	86123656	T	G	SNP	ZNHIT6	ENST00000370574	human	ensembl	74_37	-1	known	splice_site	c.1248-2	e9-2	0.998	-	-	-	no_errors	ZNHIT6	HGNC	ENSG00000117174				30	0	0	15	15	50
ZNF33A	0	genome.wustl.edu	37	10	38305806	38305806	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	10	38305806	38305806	A	G	SNP	ZNF33A	ENST00000432900	human	ensembl	74_37	+1	known	missense	c.38	p.Q13R	0.880	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180				63	0	0	65	6	8.4507
AGAP6	0	genome.wustl.edu	37	10	51768695	51768695	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	10	51768695	51768695	G	T	SNP	AGAP6	ENST00000374056	human	ensembl	74_37	+1	known	missense	c.741	p.E247D	0.992	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149				318	3	0.934579	173	115	39.9306
IFIT1B	0	genome.wustl.edu	37	10	91143104	91143104	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	10	91143104	91143104	G	C	SNP	IFIT1B	ENST00000371809	human	ensembl	74_37	+1	known	missense	c.34	p.D12H	0.015	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1B	HGNC	ENSG00000204010				91	0	0	53	28	34.5679
B4GALNT4	0	genome.wustl.edu	37	11	379952	379952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	379952	379952	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	missense	c.2575	p.V859I	0.986	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				28	0	0	20	9	31.0345
ZNF408	0	genome.wustl.edu	37	11	46726634	46726634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	46726634	46726634	C	T	SNP	ZNF408	ENST00000311764	human	ensembl	74_37	+1	known	missense	c.1384	p.P462S	0.075	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213				42	0	0	29	16	35.5556
NR1H3	0	genome.wustl.edu	37	11	47282926	47282926	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	47282926	47282926	G	T	SNP	NR1H3	ENST00000441012	human	ensembl	74_37	+1	known	missense	c.634	p.G212C	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Ecdystd_rcpt	-	no_errors	NR1H3	HGNC	ENSG00000025434				48	0	0	30	25	45.4545
OR5F1	0	genome.wustl.edu	37	11	55761793	55761793	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	55761793	55761793	G	T	SNP	OR5F1	ENST00000278409	human	ensembl	74_37	-1	known	missense	c.309	p.F103L	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133				143	0	0	83	41	33.0645
TRIM22	0	genome.wustl.edu	37	11	5730579	5730579	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	5730579	5730579	A	T	SNP	TRIM22	ENST00000379965	human	ensembl	74_37	+1	known	nonsense	c.1198	p.R400*	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM22	HGNC	ENSG00000132274				82	0	0	45	28	38.3562
SYT7	0	genome.wustl.edu	37	11	61300595	61300595	+	Silent	SNP	A	A	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	61300595	61300595	A	G	SNP	SYT7	ENST00000263846	human	ensembl	74_37	-1	known	silent	c.217	p.L73	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT7	HGNC	ENSG00000011347				51	0	0	28	13	31.7073
CDHR5	0	genome.wustl.edu	37	11	618098	618098	+	Silent	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	618098	618098	C	T	SNP	CDHR5	ENST00000358353	human	ensembl	74_37	-1	known	silent	c.1974	p.S658	0.000	NULL	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834				20	0	0	14	13	48.1481
MYO7A	0	genome.wustl.edu	37	11	76925670	76925670	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	11	76925670	76925670	C	A	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	missense	c.6577	p.L2193I	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				14	0	0	10	2	16.6667
BTBD11	0	genome.wustl.edu	37	12	108045467	108045467	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	108045467	108045467	A	C	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.3008	p.K1003T	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				37	0	0	25	19	43.1818
NOS1	0	genome.wustl.edu	37	12	117657958	117657958	+	Silent	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	117657958	117657958	G	C	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.4092	p.L1364	1.000	pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				177	0	0	179	59	24.7899
RNF10	0	genome.wustl.edu	37	12	121013630	121013630	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	121013630	121013630	A	G	SNP	RNF10	ENST00000413266	human	ensembl	74_37	+1	known	missense	c.2251	p.S751G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840				350	0	0	189	187	49.734
OGFOD2	0	genome.wustl.edu	37	12	123463763	123463763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	123463763	123463763	G	A	SNP	OGFOD2	ENST00000228922	human	ensembl	74_37	+1	known	missense	c.923	p.R308Q	0.998	smart_Pro_4_hyd_alph	smart_Pro_4_hyd_alph	-	no_errors	OGFOD2	HGNC	ENSG00000111325				39	0	0	19	27	58.6957
TMEM132C	0	genome.wustl.edu	37	12	128899732	128899732	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	128899732	128899732	G	T	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	missense	c.541	p.V181L	1.000	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234				21	0	0	15	18	54.5455
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				26	0	0	7	19	73.0769
KMT2D	0	genome.wustl.edu	37	12	49424548	49424548	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	49424548	49424548	G	C	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.13675	p.L4559V	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				55	0	0	38	33	46.4789
TESPA1	0	genome.wustl.edu	37	12	55356379	55356379	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	12	55356379	55356379	T	A	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	nonsense	c.1303	p.K435*	0.988	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				175	0	0	139	59	29.798
DCT	0	genome.wustl.edu	37	13	95118904	95118904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	13	95118904	95118904	G	A	SNP	DCT	ENST00000446125	human	ensembl	74_37	-1	known	missense	c.604	p.R202C	1.000	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166				57	0	0	33	14	29.7872
HS6ST3	0	genome.wustl.edu	37	13	96743492	96743492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	13	96743492	96743492	C	T	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	missense	c.376	p.R126C	0.995	superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352				14	0	0	7	3	30
EXOC3L4	0	genome.wustl.edu	37	14	103566569	103566569	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	14	103566569	103566569	C	G	SNP	EXOC3L4	ENST00000380069	human	ensembl	74_37	+1	known	missense	c.13	p.Q5E	0.000	NULL	pfam_Sec6	-	no_errors	EXOC3L4	HGNC	ENSG00000205436				12	0	0	13	5	27.7778
TRIM9	0	genome.wustl.edu	37	14	51448802	51448802	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	14	51448802	51448802	G	C	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.1866	p.D622E	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				44	0	0	30	20	40
RPL13AP3	0	genome.wustl.edu	37	14	56233336	56233336	+	RNA	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	14	56233336	56233336	G	T	SNP	RPL13AP3	ENST00000494676	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL13AP3	HGNC	ENSG00000177350				25	0	0	12	8	40
RYR3	0	genome.wustl.edu	37	15	33878223	33878223	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	15	33878223	33878223	T	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.1694	p.I565N	1.000	pfam_Ca-rel_channel,prints_Ryan_recept	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				74	0	0	59	7	10.6061
SHC4	0	genome.wustl.edu	37	15	49254628	49254628	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	15	49254628	49254628	C	A	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	missense	c.585	p.R195S	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,prints_PID_Shc-like	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634				71	0	0	34	2	5.55556
IDH3A	0	genome.wustl.edu	37	15	78454614	78454614	+	Silent	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	15	78454614	78454614	C	T	SNP	IDH3A	ENST00000299518	human	ensembl	74_37	+1	known	silent	c.516	p.T172	0.838	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3A	HGNC	ENSG00000166411				58	0	0	22	28	56
RRN3	0	genome.wustl.edu	37	16	15155664	15155664	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	15155664	15155664	G	T	SNP	RRN3	ENST00000198767	human	ensembl	74_37	-1	known	missense	c.1893	p.F631L	0.955	NULL	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721				48	0	0	33	17	34
DNAH3	0	genome.wustl.edu	37	16	20975848	20975848	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	20975848	20975848	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	nonsense	c.9358	p.Q3120*	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				185	0	0	120	72	37.5
ADCY9	0	genome.wustl.edu	37	16	4164838	4164838	+	Silent	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	4164838	4164838	G	A	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.606	p.G202	0.002	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				50	0	0	52	19	26.7606
BRD7	0	genome.wustl.edu	37	16	50354623	50354623	+	Silent	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	50354623	50354623	C	A	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	silent	c.1566	p.L522	0.975	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164				210	1	0.473934	141	97	40.7563
CES5A	0	genome.wustl.edu	37	16	55899941	55899941	+	Silent	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	55899941	55899941	G	A	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	silent	c.726	p.F242	0.992	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				47	0	0	25	21	45.6522
HYDIN	0	genome.wustl.edu	37	16	70934955	70934955	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	70934955	70934955	G	T	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	nonsense	c.9000	p.Y3000*	0.989	superfamily_PapD-like	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				163	1	0.609756	121	30	19.8675
ZNF19	0	genome.wustl.edu	37	16	71512174	71512174	+	Silent	SNP	T	T	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	71512174	71512174	T	A	SNP	ZNF19	ENST00000288177	human	ensembl	74_37	-1	known	silent	c.231	p.A77	0.963	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF19	HGNC	ENSG00000157429				46	0	0	21	11	34.375
KCNG4	0	genome.wustl.edu	37	16	84270603	84270603	+	Silent	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	16	84270603	84270603	C	A	SNP	KCNG4	ENST00000308251	human	ensembl	74_37	-1	known	silent	c.489	p.R163	0.041	superfamily_BTB/POZ_fold,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418				34	0	0	27	12	30.7692
UBB	0	genome.wustl.edu	37	17	16285491	16285491	+	Silent	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	17	16285491	16285491	C	T	SNP	UBB	ENST00000302182	human	ensembl	74_37	+1	novel	silent	c.270	p.T90	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,prints_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBB	HGNC	ENSG00000170315				140	0	0	76	4	5
UBB	0	genome.wustl.edu	37	17	16285497	16285497	+	Silent	SNP	A	A	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	17	16285497	16285497	A	G	SNP	UBB	ENST00000302182	human	ensembl	74_37	+1	novel	silent	c.276	p.E92	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,prints_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBB	HGNC	ENSG00000170315				144	1	0.689655	74	4	5.12821
ITGB3	0	genome.wustl.edu	37	17	45362061	45362061	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	17	45362061	45362061	A	C	SNP	ITGB3	ENST00000559488	human	ensembl	74_37	+1	known	missense	c.614	p.D205A	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207				182	0	0	163	13	7.38636
MIB1	0	genome.wustl.edu	37	18	19418419	19418419	+	Silent	SNP	T	T	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	18	19418419	19418419	T	G	SNP	MIB1	ENST00000261537	human	ensembl	74_37	+1	known	silent	c.1923	p.L641	0.971	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt	-	no_errors	MIB1	HGNC	ENSG00000101752				64	0	0	43	35	44.8718
SMAD4	0	genome.wustl.edu	37	18	48591919	48591919	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	18	48591919	48591919	G	C	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.1082	p.R361P	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				63	0	0	18	34	65.3846
PCSK4	0	genome.wustl.edu	37	19	1481839	1481839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	1481839	1481839	C	T	SNP	PCSK4	ENST00000300954	human	ensembl	74_37	-1	known	missense	c.2187	p.M729I	0.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257				17	0	0	8	7	46.6667
UNC13A	0	genome.wustl.edu	37	19	17738735	17738735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	17738735	17738735	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.4032	p.M1344I	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				631	1	0.158228	395	234	37.2019
ZNF607	0	genome.wustl.edu	37	19	38190035	38190035	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	38190035	38190035	C	G	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	missense	c.997	p.G333R	0.992	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				158	0	0	115	47	29.0123
RYR1	0	genome.wustl.edu	37	19	38968395	38968395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	38968395	38968395	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.4339	p.V1447M	1.000	pfam_SPRY_rcpt,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				59	0	0	28	20	41.6667
SPTBN4	0	genome.wustl.edu	37	19	41003482	41003482	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	41003482	41003482	T	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.755	p.L252Q	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				53	0	0	43	21	32.8125
CREB3L3	0	genome.wustl.edu	37	19	4159760	4159760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	4159760	4159760	C	T	SNP	CREB3L3	ENST00000078445	human	ensembl	74_37	+1	known	missense	c.557	p.S186L	0.145	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566				61	0	0	36	18	33.3333
ATP5SL	0	genome.wustl.edu	37	19	41938220	41938220	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	41938220	41938220	C	G	SNP	ATP5SL	ENST00000417807	human	ensembl	74_37	-1	known	missense	c.708	p.E236D	0.577	NULL	NULL	-	no_errors	ATP5SL	HGNC	ENSG00000105341				65	0	0	39	18	31.5789
SLC8A2	0	genome.wustl.edu	37	19	47969322	47969322	+	Silent	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	47969322	47969322	G	A	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	silent	c.339	p.N113	0.518	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				47	0	0	50	6	10.7143
FCGRT	0	genome.wustl.edu	37	19	50017644	50017644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	50017644	50017644	G	A	SNP	FCGRT	ENST00000221466	human	ensembl	74_37	+1	known	missense	c.502	p.D168N	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	FCGRT	HGNC	ENSG00000104870				12	0	0	7	3	30
RRAS	0	genome.wustl.edu	37	19	50138991	50138991	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	50138991	50138991	C	G	SNP	RRAS	ENST00000246792	human	ensembl	74_37	-1	known	missense	c.572	p.R191P	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAS	HGNC	ENSG00000126458				63	0	0	44	16	26.6667
CLEC11A	0	genome.wustl.edu	37	19	51228703	51228703	+	Silent	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	51228703	51228703	C	T	SNP	CLEC11A	ENST00000250340	human	ensembl	74_37	+1	known	silent	c.951	p.Y317	0.995	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC11A	HGNC	ENSG00000105472				16	0	0	4	5	55.5556
NEB	0	genome.wustl.edu	37	2	152581987	152581987	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	2	152581987	152581987	C	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.382	p.V128L	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				124	0	0	97	38	28.1481
ZDBF2	0	genome.wustl.edu	37	2	207175935	207175935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	2	207175935	207175935	C	T	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.6683	p.S2228L	0.006	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				27	0	0	27	11	28.9474
CPS1	0	genome.wustl.edu	37	2	211507237	211507237	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	2	211507237	211507237	G	T	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.3007	p.V1003F	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				82	0	0	53	26	32.9114
KCNG3	0	genome.wustl.edu	37	2	42671708	42671708	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	2	42671708	42671708	G	C	SNP	KCNG3	ENST00000306078	human	ensembl	74_37	-1	known	missense	c.677	p.A226G	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG3	HGNC	ENSG00000171126				130	0	0	87	50	36.4964
EPB41L1	0	genome.wustl.edu	37	20	34797562	34797562	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	20	34797562	34797562	C	A	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	missense	c.1821	p.S607R	1.000	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367				42	0	0	29	11	27.5
RTFDC1	0	genome.wustl.edu	37	20	55048432	55048432	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	20	55048432	55048432	G	C	SNP	RTFDC1	ENST00000357348	human	ensembl	74_37	+1	known	missense	c.235	p.V79L	1.000	pfam_Rtf2_RING-finger	pfam_Rtf2_RING-finger	-	no_errors	RTFDC1	HGNC	ENSG00000022277				72	0	0	46	27	36.9863
CDH4	0	genome.wustl.edu	37	20	60503257	60503257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	20	60503257	60503257	C	T	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	missense	c.1781	p.P594L	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				83	0	0	52	29	35.8025
FAM3B	0	genome.wustl.edu	37	21	42710319	42710319	+	Silent	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	21	42710319	42710319	A	C	SNP	FAM3B	ENST00000357985	human	ensembl	74_37	+1	known	silent	c.178	p.R60	1.000	NULL	NULL	-	no_errors	FAM3B	HGNC	ENSG00000183844				169	0	0	103	56	35.2201
PI4KA	0	genome.wustl.edu	37	22	21106010	21106010	+	Silent	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	22	21106010	21106010	C	A	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	silent	c.3021	p.L1007	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				52	0	0	29	2	6.45161
SLC7A4	0	genome.wustl.edu	37	22	21385414	21385414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	22	21385414	21385414	C	T	SNP	SLC7A4	ENST00000382932	human	ensembl	74_37	-1	known	missense	c.688	p.A230T	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960				50	0	0	20	27	57.4468
ENSG00000206532	0	genome.wustl.edu	37	3	110612008	110612008	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	3	110612008	110612008	C	G	SNP	ENSG00000206532	ENST00000383686	human	ensembl	74_37	-1	known	missense	c.202	p.D68H	0.000	NULL	NULL	-	no_errors	RP11-553A10.1	Clone_based_vega_gene	ENSG00000206532				13	0	0	7	4	36.3636
SATB1	0	genome.wustl.edu	37	3	18391129	18391129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	3	18391129	18391129	G	A	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.1921	p.P641S	0.581	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				8	0	0	11	5	31.25
GOLGA4	0	genome.wustl.edu	37	3	37368748	37368748	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	3	37368748	37368748	C	G	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	missense	c.5371	p.Q1791E	0.597	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				164	0	0	99	49	33.1081
VPRBP	0	genome.wustl.edu	37	3	51458366	51458366	+	Silent	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	3	51458366	51458366	G	A	SNP	VPRBP	ENST00000335891	human	ensembl	74_37	-1	known	silent	c.711	p.I237	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041				196	0	0	126	89	41.3953
ARAP2	0	genome.wustl.edu	37	4	36189098	36189098	+	Silent	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	4	36189098	36189098	A	C	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.1653	p.T551	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				41	0	0	32	3	8.57143
AMBN	0	genome.wustl.edu	37	4	71468517	71468517	+	Silent	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	4	71468517	71468517	C	A	SNP	AMBN	ENST00000322937	human	ensembl	74_37	+1	known	silent	c.573	p.L191	0.000	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522				23	0	0	27	2	6.89655
MARCH6	0	genome.wustl.edu	37	5	10411480	10411480	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	10411480	10411480	A	T	SNP	MARCH6	ENST00000274140	human	ensembl	74_37	+1	known	missense	c.1727	p.E576V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495				64	0	0	72	19	20.8791
APC	0	genome.wustl.edu	37	5	112174631	112174631	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	112174631	112174631	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.3340	p.R1114*	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				94	0	0	29	24	45.283
SLC6A18	0	genome.wustl.edu	37	5	1243688	1243688	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	1243688	1243688	C	G	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	missense	c.1150	p.L384V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363				36	0	0	25	15	37.5
PCDHB8	0	genome.wustl.edu	37	5	140558485	140558485	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	140558485	140558485	C	G	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.870	p.S290R	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				151	0	0	78	43	35.5372
HRH2	0	genome.wustl.edu	37	5	175110463	175110463	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	175110463	175110463	C	A	SNP	HRH2	ENST00000377291	human	ensembl	74_37	+1	known	missense	c.227	p.A76D	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT6_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H2_rcpt,prints_GPCR_Rhodpsn,prints_5HT6_rcpt	-	no_errors	HRH2	HGNC	ENSG00000113749				100	0	0	76	24	24
NUP155	0	genome.wustl.edu	37	5	37342678	37342678	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	37342678	37342678	A	T	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.1066	p.C356S	1.000	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569				59	0	0	20	12	37.5
RAB3C	0	genome.wustl.edu	37	5	58021913	58021913	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	58021913	58021913	A	T	SNP	RAB3C	ENST00000282878	human	ensembl	74_37	+1	known	missense	c.337	p.T113S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932				115	0	0	92	44	32.3529
CMYA5	0	genome.wustl.edu	37	5	79034978	79034978	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	79034978	79034978	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.10390	p.N3464H	0.042	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				73	0	0	44	24	35.2941
VCAN	0	genome.wustl.edu	37	5	82876239	82876239	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	82876239	82876239	G	C	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.10177	p.E3393Q	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				43	0	0	26	17	39.5349
ELL2	0	genome.wustl.edu	37	5	95278749	95278749	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	5	95278749	95278749	A	T	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	nonsense	c.152	p.L51*	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985				25	0	0	26	16	38.0952
MED23	0	genome.wustl.edu	37	6	131914216	131914216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	6	131914216	131914216	C	T	SNP	MED23	ENST00000368058	human	ensembl	74_37	-1	known	missense	c.3346	p.V1116M	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				90	0	0	22	36	62.069
SYNE1	0	genome.wustl.edu	37	6	152644706	152644706	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	6	152644706	152644706	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.15824	p.T5275N	0.982	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				39	0	0	22	3	12
CDKAL1	0	genome.wustl.edu	37	6	20846367	20846367	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	6	20846367	20846367	C	G	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	missense	c.700	p.P234A	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996				75	0	0	56	46	45.098
OR2J2	0	genome.wustl.edu	37	6	29141694	29141694	+	Silent	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	6	29141694	29141694	G	A	SNP	OR2J2	ENST00000377167	human	ensembl	74_37	+1	known	silent	c.282	p.S94	0.050	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700				187	0	0	160	50	23.8095
CDYL	0	genome.wustl.edu	37	6	4935819	4935819	+	Silent	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	6	4935819	4935819	G	C	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	silent	c.924	p.V308	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				123	0	0	116	52	30.9524
GSTA5	0	genome.wustl.edu	37	6	52701078	52701078	+	Silent	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	6	52701078	52701078	G	C	SNP	GSTA5	ENST00000284562	human	ensembl	74_37	-1	known	silent	c.228	p.A76	0.992	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA5	HGNC	ENSG00000182793				222	0	0	206	51	19.8444
FBXO24	0	genome.wustl.edu	37	7	100192033	100192033	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	7	100192033	100192033	T	C	SNP	FBXO24	ENST00000427939	human	ensembl	74_37	+1	known	missense	c.935	p.V312A	1.000	superfamily_RCC1/BLIP-II	pfam_F-box_dom,pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336				69	0	0	48	25	34.2466
MUC17	0	genome.wustl.edu	37	7	100686417	100686417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	7	100686417	100686417	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.11720	p.T3907I	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				139	0	0	80	40	33.3333
GPR37	0	genome.wustl.edu	37	7	124386683	124386683	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	7	124386683	124386683	T	G	SNP	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	missense	c.1738	p.S580R	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775				175	0	0	103	37	26.4286
ADCY8	0	genome.wustl.edu	37	8	132052171	132052171	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	8	132052171	132052171	T	G	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.409	p.S137R	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				13	0	0	18	4	18.1818
TEX15	0	genome.wustl.edu	37	8	30699691	30699691	+	Silent	SNP	A	A	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	8	30699691	30699691	A	T	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	silent	c.6843	p.P2281	0.005	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				47	0	0	38	19	33.3333
OSR2	0	genome.wustl.edu	37	8	99961741	99961741	+	Silent	SNP	G	G	A			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	8	99961741	99961741	G	A	SNP	OSR2	ENST00000457907	human	ensembl	74_37	+1	known	silent	c.924	p.L308	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920				196	0	0	141	55	28.0612
ALAD	0	genome.wustl.edu	37	9	116151266	116151266	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	9	116151266	116151266	G	T	SNP	ALAD	ENST00000409155	human	ensembl	74_37	-1	known	missense	c.922	p.R308S	1.000	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	-	no_errors	ALAD	HGNC	ENSG00000148218				54	0	0	38	6	13.6364
TNFSF15	0	genome.wustl.edu	37	9	117568086	117568086	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	9	117568086	117568086	G	C	SNP	TNFSF15	ENST00000374045	human	ensembl	74_37	-1	known	missense	c.207	p.F69L	0.060	NULL	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF	-	no_errors	TNFSF15	HGNC	ENSG00000181634				37	0	0	14	16	53.3333
LOC100996870	0	genome.wustl.edu	37	9	66457330	66457330	+	RNA	SNP	G	G	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	9	66457330	66457330	G	T	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.200	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				26	0	0	26	4	13.3333
TLR7	0	genome.wustl.edu	37	X	12906522	12906522	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	X	12906522	12906522	A	C	SNP	TLR7	ENST00000380659	human	ensembl	74_37	+1	known	missense	c.2895	p.E965D	0.179	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664				154	0	0	37	130	77.8443
ELF4	0	genome.wustl.edu	37	X	129208703	129208703	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	X	129208703	129208703	C	G	SNP	ELF4	ENST00000308167	human	ensembl	74_37	-1	known	missense	c.100	p.A34P	1.000	pfam_TF_Elf_N	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF4	HGNC	ENSG00000102034				45	0	0	10	24	70.5882
GRIPAP1	0	genome.wustl.edu	37	X	48837686	48837686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	X	48837686	48837686	C	T	SNP	GRIPAP1	ENST00000376441	human	ensembl	74_37	-1	known	missense	c.1871	p.R624Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400				18	0	0	5	14	73.6842
WDR45	0	genome.wustl.edu	37	X	48934155	48934155	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	X	48934155	48934155	A	G	SNP	WDR45	ENST00000322995	human	ensembl	74_37	-1	known	missense	c.370	p.Y124H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45	HGNC	ENSG00000196998				72	0	0	61	6	8.95522
AKAP4	0	genome.wustl.edu	37	X	49957932	49957932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	X	49957932	49957932	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.1432	p.D478N	0.114	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				87	0	0	22	64	74.4186
DOCK6	0	genome.wustl.edu	37	19	11343974	11343976	+	In_Frame_Del	DEL	GGT	GGT	-			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	GGT	GGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	19	11343974	11343976	GGT	-	DEL	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	in_frame_del	c.2623_2621	p.Y874in_frame_del	1.000:0.997:0.996	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				25	0	0	15	2	11.7647
PRUNE2	0	genome.wustl.edu	37	9	79461440	79461458	+	Frame_Shift_Del	DEL	GATGAGCCAGTTGCTCGGT	GATGAGCCAGTTGCTCGGT	-			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	GATGAGCCAGTTGCTCGGT	GATGAGCCAGTTGCTCGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	9	79461440	79461458	GATGAGCCAGTTGCTCGGT	-	DEL	PRUNE2	ENST00000376718	human	ensembl	74_37	-1	novel	frame_shift_del	c.499_481	p.T161fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:0.988:0.790:1.000:1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				77	0	0	45	3	6.25
TLE4	0	genome.wustl.edu	37	9	82335151	82335163	+	Frame_Shift_Del	DEL	CATGCTGCAGCGA	CATGCTGCAGCGA	-			TCGA-BR-4267-01A-01D-1126-08	TCGA-BR-4267-11A-01D-1126-08	CATGCTGCAGCGA	CATGCTGCAGCGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a28c27a6-9a08-4262-bb11-28b611e84d29	50fe780e-876b-46e8-87c3-9f7315fa8c7d	9	82335151	82335163	CATGCTGCAGCGA	-	DEL	TLE4	ENST00000376520	human	ensembl	74_37	+1	known	frame_shift_del	c.1877_1889	p.C627fs	1.000:0.406:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.280:1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829				61	0	0	42	7	14.2857