Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Genome_Change Annotation_Transcript Transcript_Strand Transcript_Exon Transcript_Position cDNA_Change Codon_Change Protein_Change Other_Transcripts Refseq_mRNA_Id Refseq_prot_Id SwissProt_acc_Id SwissProt_entry_Id Description UniProt_AApos UniProt_Region UniProt_Site UniProt_Natural_Variations UniProt_Experimental_Info GO_Biological_Process GO_Cellular_Component GO_Molecular_Function COSMIC_overlapping_mutations COSMIC_fusion_genes COSMIC_tissue_types_affected COSMIC_total_alterations_in_gene Tumorscape_Amplification_Peaks Tumorscape_Deletion_Peaks TCGAscape_Amplification_Peaks TCGAscape_Deletion_Peaks DrugBank ref_context gc_content CCLE_ONCOMAP_overlapping_mutations CCLE_ONCOMAP_total_mutations_in_gene CGC_Mutation_Type CGC_Translocation_Partner CGC_Tumor_Types_Somatic CGC_Tumor_Types_Germline CGC_Other_Diseases DNARepairGenes_Role FamilialCancerDatabase_Syndromes MUTSIG_Published_Results OREGANNO_ID OREGANNO_Values TNFRSF8 943 broad.mit.edu 37 1 12170181 12170181 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:12170181G>A uc001atq.2 + 6 818 c.596G>A c.(595-597)CGC>CAC p.R199H TNFRSF8_uc010obc.1_Missense_Mutation_p.R88H NM_001243 NP_001234 P28908 TNR8_HUMAN tumor necrosis factor receptor superfamily, 199 Extracellular (Potential). cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process cytoplasm|integral to membrane|plasma membrane skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1) 5 Ovarian(185;0.249) Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255) UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649) GGGGGCACCCGCCTCGCCCAG 0.622000 PADI2 11240 broad.mit.edu 37 1 17402248 17402248 + Nonsense_Mutation SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:17402248C>A uc001baf.2 - 12 1463 c.1381G>T c.(1381-1383)GAG>TAG p.E461* PADI2_uc010ocm.1_Nonsense_Mutation_p.E345* NM_007365 NP_031391 Q9Y2J8 PADI2_HUMAN peptidyl arginine deiminase, type II 461 peptidyl-citrulline biosynthetic process from peptidyl-arginine cytoplasm calcium ion binding|protein-arginine deiminase activity ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1) 6 Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255) UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201) L-Citrulline(DB00155) GAGTAGAGCTCCACGGGCGCC 0.602000 OREG0013145 type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip) PINK1 65018 broad.mit.edu 37 1 20971110 20971110 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:20971110C>T uc001bdm.2 + 4 998 c.904C>T c.(904-906)CGC>TGC p.R302C NM_032409 NP_115785 Q9BXM7 PINK1_HUMAN PTEN induced putative kinase 1 precursor 302 Protein kinase.|Cytoplasmic (Potential). cell death|intracellular protein kinase cascade|mitochondrion degradation|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of release of cytochrome c from mitochondria|regulation of protein complex assembly|regulation of protein ubiquitination|response to stress cytosol|integral to membrane|mitochondrial outer membrane ATP binding|C3HC4-type RING finger domain binding|calcium-dependent protein kinase activity|magnesium ion binding|protein serine/threonine kinase activity|ubiquitin protein ligase binding ovary(2)|central_nervous_system(1) 3 all_lung(284;2.72e-05)|Lung NSC(340;2.94e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255) UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.21e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000146)|Kidney(64;0.000182)|GBM - Glioblastoma multiforme(114;0.000497)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199) GCTGCCCTCACGCCTCCACCC 0.642000 SRRM1 10250 broad.mit.edu 37 1 24989244 24989244 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:24989244C>T uc001bjm.2 + 12 1801 c.1577C>T c.(1576-1578)TCC>TTC p.S526F SRRM1_uc010oel.1_Missense_Mutation_p.S524F|SRRM1_uc009vrh.1_Missense_Mutation_p.S485F|SRRM1_uc009vri.1_Missense_Mutation_p.S441F|SRRM1_uc010oem.1_RNA NM_005839 NP_005830 Q8IYB3 SRRM1_HUMAN serine/arginine repetitive matrix 1 526 Necessary for speckles and matrix localization.|Arg-rich.|Ser-rich. mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck DNA binding|protein binding|RNA binding ovary(2)|haematopoietic_and_lymphoid_tissue(1) 3 Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19) UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138) CATTCCCCTTCCCGGAGTGCT 0.502000 GMEB1 10691 broad.mit.edu 37 1 29040683 29040683 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:29040683C>T uc001bra.2 + 10 1258 c.1120C>T c.(1120-1122)CCT>TCT p.P374S GMEB1_uc001bqz.2_Missense_Mutation_p.P364S|GMEB1_uc001brb.2_Missense_Mutation_p.P364S NM_006582 NP_006573 Q9Y692 GMEB1_HUMAN glucocorticoid modulatory element binding 374 regulation of transcription, DNA-dependent|transcription, DNA-dependent cytoplasm|nucleus DNA binding|metal ion binding|transcription coactivator activity 0 Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123) Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649) TGTGAGCACTCCTAAGCCTCC 0.557000 LRRC7 57554 broad.mit.edu 37 1 70505053 70505053 + Silent SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:70505053C>A uc001dep.2 + 19 3462 c.3432C>A c.(3430-3432)GGC>GGA p.G1144G LRRC7_uc009wbg.2_Silent_p.G428G|LRRC7_uc001deq.2_Silent_p.G385G NM_020794 NP_065845 Q96NW7 LRRC7_HUMAN leucine rich repeat containing 7 1144 centrosome|focal adhesion|nucleolus protein binding ovary(9)|breast(2)|central_nervous_system(2)|liver(1) 14 ATAGGTACGGCAGACCCCCAT 0.547000 TNNI3K 51086 broad.mit.edu 37 1 74834948 74834948 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:74834948G>A uc001dgf.1 + 15 1523 c.1472G>A c.(1471-1473)CGT>CAT p.R491H TNNI3K_uc001dgc.1_Missense_Mutation_p.R592H|TNNI3K_uc001dgd.2_Missense_Mutation_p.R592H|TNNI3K_uc001dge.1_Missense_Mutation_p.R592H NM_015978 NP_057062 Q59H18 TNI3K_HUMAN TNNI3 interacting kinase isoform b 491 Protein kinase. cytoplasm|nucleus ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1) 10 GCTATAAAACGGTAAGCAAGC 0.328000 ELTD1 64123 broad.mit.edu 37 1 79357356 79357356 + Silent SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:79357356G>A uc001diq.3 - 14 2019 c.1863C>T c.(1861-1863)CTC>CTT p.L621L NM_022159 NP_071442 Q9HBW9 ELTD1_HUMAN EGF, latrophilin and seven transmembrane domain 621 Helical; Name=6; (Potential). neuropeptide signaling pathway integral to membrane|plasma membrane calcium ion binding|G-protein coupled receptor activity ovary(1)|skin(1) 2 COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148) ACAGAAGAGCGAGGGCTCCTC 0.463000 PEX19 5824 broad.mit.edu 37 1 160253356 160253356 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:160253356C>T uc001fvs.2 - 2 171 c.144G>A c.(142-144)TCG>TCA p.S48S DCAF8_uc010pjc.1_Intron|PEX19_uc010pje.1_RNA|PEX19_uc001fvt.2_Intron NM_002857 NP_002848 P40855 PEX19_HUMAN peroxisomal biogenesis factor 19 isoform a 48 Necessary for PEX19 function on peroxisome biogenesis.|Docking to the peroxisome membrane and binding to PEX3. peroxisome membrane biogenesis|peroxisome organization|protein targeting to peroxisome|transmembrane transport brush border membrane|cytosol|integral to membrane|nucleus|peroxisomal membrane protein binding|protein N-terminus binding 0 all_cancers(52;1.27e-18)|all_hematologic(112;0.093) BRCA - Breast invasive adenocarcinoma(70;0.111) TCTGGGGCCCCGAAGCATCAG 0.567000 HMCN1 83872 broad.mit.edu 37 1 185947011 185947011 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:185947011C>T uc001grq.1 + 16 2693 c.2464C>T c.(2464-2466)CCA>TCA p.P822S HMCN1_uc001grr.1_Missense_Mutation_p.P163S NM_031935 NP_114141 Q96RW7 HMCN1_HUMAN hemicentin 1 precursor 822 Ig-like C2-type 5. response to stimulus|visual perception basement membrane calcium ion binding ovary(22)|skin(1) 23 TTATCCAGAACCAACAATCAA 0.393000 NR5A2 2494 broad.mit.edu 37 1 200014579 200014579 + Silent SNP T T C TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:200014579T>C uc001gvb.2 + 4 536 c.330T>C c.(328-330)TTT>TTC p.F110F NR5A2_uc001gvc.2_Silent_p.F64F|NR5A2_uc009wzh.2_Silent_p.F70F|NR5A2_uc010pph.1_Silent_p.F38F NM_205860 NP_995582 O00482 NR5A2_HUMAN nuclear receptor subfamily 5, group A, member 2 110 Nuclear receptor. embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor cytoplasm|nucleoplasm lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding large_intestine(1)|ovary(1) 2 Prostate(682;0.19) AGGGATTTTTTAAGCGAACAG 0.338000 CR1L 1379 broad.mit.edu 37 1 207871117 207871117 + Silent SNP G G T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:207871117G>T uc001hga.3 + 7 1162 c.1041G>T c.(1039-1041)GTG>GTT p.V347V CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA NM_175710 NP_783641 Q2VPA4 CR1L_HUMAN complement component (3b/4b) receptor 1-like 347 Sushi 5. cytoplasm|extracellular region|membrane 0 TTTTTCCAGTGAAATCCTGTG 0.403000 OR2L3 391192 broad.mit.edu 37 1 248224695 248224695 + Missense_Mutation SNP C C G TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr1:248224695C>G uc001idx.1 + 1 712 c.712C>G c.(712-714)CTG>GTG p.L238V OR2L13_uc001ids.2_Intron NM_001004687 NP_001004687 Q8NG85 OR2L3_HUMAN olfactory receptor, family 2, subfamily L, 238 Helical; Name=6; (Potential). sensory perception of smell integral to membrane|plasma membrane olfactory receptor activity 0 all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136) OV - Ovarian serous cystadenocarcinoma(106;0.0278) GAAAGCCTACCTGACCTGCAG 0.473000 ABI1 10006 broad.mit.edu 37 10 27149760 27149760 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr10:27149760C>T uc001isx.2 - 1 200 c.33G>A c.(31-33)GAG>GAA p.E11E ABI1_uc001ite.2_Silent_p.E11E|ABI1_uc010qdh.1_Silent_p.E11E|ABI1_uc010qdi.1_Silent_p.E11E|ABI1_uc001isy.2_Silent_p.E11E|ABI1_uc001ita.2_Silent_p.E11E|ABI1_uc001isz.2_Silent_p.E11E|ABI1_uc001itb.2_Silent_p.E11E|ABI1_uc001itc.2_Silent_p.E11E|ABI1_uc010qdj.1_Silent_p.E11E|ABI1_uc001itd.2_Silent_p.E11E|ABI1_uc010qdk.1_Silent_p.E11E NM_005470 NP_005461 Q8IZP0 ABI1_HUMAN abl-interactor 1 isoform a 11 actin polymerization or depolymerization|cellular component movement|negative regulation of cell proliferation|peptidyl-tyrosine phosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway cell junction|cytoskeleton|cytosol|endoplasmic reticulum|filopodium|growth cone|lamellipodium|nucleus|soluble fraction|synapse|synaptosome cytoskeletal protein binding central_nervous_system(1) 1 CAGACGGGATCTCCTCCTCTA 0.567000 RASGEF1A 221002 broad.mit.edu 37 10 43693520 43693520 + Missense_Mutation SNP C C T rs138913845 TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr10:43693520C>T uc001jap.1 - 10 1237 c.1156G>A c.(1156-1158)GTT>ATT p.V386I RASGEF1A_uc001jao.1_Missense_Mutation_p.V394I NM_145313 NP_660356 Q8N9B8 RGF1A_HUMAN RasGEF domain family, member 1A 386 Ras-GEF. cell migration|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction intracellular Ras guanyl-nucleotide exchange factor activity 0 ATGTCCTTAACGAAGAGGTTG 0.552000 OREG0020135 type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip) ZMIZ1 57178 broad.mit.edu 37 10 81064968 81064968 + Silent SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr10:81064968C>A uc001kaf.2 + 20 2906 c.2334C>A c.(2332-2334)ACC>ACA p.T778T ZMIZ1_uc001kag.2_Silent_p.T654T|ZMIZ1_uc010qlq.1_5'Flank NM_020338 NP_065071 Q9ULJ6 ZMIZ1_HUMAN retinoic acid induced 17 778 SP-RING-type. transcription, DNA-dependent cytoplasm|nuclear speck zinc ion binding ovary(2)|breast(1)|skin(1) 4 all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985) Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229) AGAGAGGGACCTGGAGGTGTC 0.597000 MUC2 4583 broad.mit.edu 37 11 1093720 1093720 + Missense_Mutation SNP T T G TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr11:1093720T>G uc001lsx.1 + 33 12652 c.12625T>G c.(12625-12627)TTG>GTG p.L4209V NM_002457 NP_002448 Q02817 MUC2_HUMAN mucin 2 precursor 4209 inner mucus layer|outer mucus layer protein binding lung(1)|breast(1) 2 all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191) BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703) Pranlukast(DB01411) CATTGCTGAGTTGACCACATC 0.607000 GRIK4 2900 broad.mit.edu 37 11 120744839 120744839 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr11:120744839G>A uc001pxn.2 + 10 1258 c.971G>A c.(970-972)CGG>CAG p.R324Q GRIK4_uc009zav.1_Missense_Mutation_p.R324Q|GRIK4_uc009zaw.1_Missense_Mutation_p.R324Q|GRIK4_uc009zax.1_Missense_Mutation_p.R324Q NM_014619 NP_055434 Q16099 GRIK4_HUMAN glutamate receptor KA1 precursor 324 Extracellular (Potential). glutamate signaling pathway|synaptic transmission cell junction|postsynaptic membrane extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity ovary(2)|central_nervous_system(1) 3 Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21) BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116) L-Glutamic Acid(DB00142) GAACTGAACCGGAGCCAAGAG 0.517000 TECTA 7007 broad.mit.edu 37 11 121028745 121028745 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr11:121028745G>A uc010rzo.1 + 13 4501 c.4501G>A c.(4501-4503)GCC>ACC p.A1501T NM_005422 NP_005413 O75443 TECTA_HUMAN tectorin alpha precursor 1501 VWFD 4. cell-matrix adhesion|sensory perception of sound anchored to membrane|plasma membrane|proteinaceous extracellular matrix breast(6)|ovary(2)|skin(2) 10 all_hematologic(175;0.208) Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112) BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166) CTTCGACGGCGCCTTCCTGCG 0.642000 OR10S1 219873 broad.mit.edu 37 11 123847677 123847677 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr11:123847677C>T uc001pzm.1 - 1 722 c.722G>A c.(721-723)CGC>CAC p.R241H NM_001004474 NP_001004474 Q8NGN2 O10S1_HUMAN olfactory receptor, family 10, subfamily S, 241 Cytoplasmic (Potential). sensory perception of smell integral to membrane|plasma membrane olfactory receptor activity ovary(1)|skin(1) 2 Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22) BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399) TGTGCGGATGCGCAACACAGC 0.582000 CACNA2D4 93589 broad.mit.edu 37 12 1995426 1995426 + Missense_Mutation SNP T T A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr12:1995426T>A uc001qjp.2 - 8 1187 c.956A>T c.(955-957)GAC>GTC p.D319V CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron NM_172364 NP_758952 Q7Z3S7 CA2D4_HUMAN voltage-gated calcium channel alpha(2)delta-4 319 VWFA.|Extracellular (Potential). integral to membrane calcium channel activity|metal ion binding|voltage-gated ion channel activity ovary(1) 1 Ovarian(42;0.107) Myeloproliferative disorder(1001;0.206) OV - Ovarian serous cystadenocarcinoma(31;0.00113) Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451) CCCCAGGGTGTCCAAGATGGT 0.473000 AMIGO2 347902 broad.mit.edu 37 12 47471424 47471424 + Silent SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr12:47471424G>A uc001rpm.2 - 3 2017 c.1362C>T c.(1360-1362)TCC>TCT p.S454S FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.S454S|AMIGO2_uc001rpl.2_Silent_p.S454S NM_001143668 NP_001137140 Q86SJ2 AMGO2_HUMAN adhesion molecule with Ig-like domain 2 454 Cytoplasmic (Potential). heterophilic cell-cell adhesion|homophilic cell adhesion integral to membrane|nucleus|plasma membrane ovary(1)|skin(1) 2 Renal(347;0.138)|Lung SC(27;0.192) GTTCATCAGCGGAGGCATCAC 0.512000 TARBP2 6895 broad.mit.edu 37 12 53899824 53899824 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr12:53899824C>T uc001sdo.2 + 9 1481 c.993C>T c.(991-993)ACC>ACT p.T331T TARBP2_uc001sdp.2_Silent_p.T310T|TARBP2_uc001sdq.2_Silent_p.T187T|TARBP2_uc001sdr.2_Silent_p.T187T|TARBP2_uc001sds.2_3'UTR|TARBP2_uc001sdt.2_Silent_p.T310T|TARBP2_uc001sdu.2_Silent_p.T187T|TARBP2_uc001sdv.2_RNA NM_134323 NP_599150 Q15633 TRBP2_HUMAN TAR RNA binding protein 2 isoform a 331 Sufficient for interaction with DICER1.|DRBM 3.|Sufficient for interaction with PRKRA. miRNA loading onto RISC involved in gene silencing by miRNA|negative regulation of defense response to virus by host|negative regulation of protein kinase activity|positive regulation of viral genome replication|pre-miRNA processing|production of siRNA involved in RNA interference|regulation of transcription from RNA polymerase II promoter|regulation of translation|regulation of viral transcription|targeting of mRNA for destruction involved in RNA interference cytosol|nucleus|perinuclear region of cytoplasm|RNA-induced silencing complex double-stranded RNA binding|protein homodimerization activity|siRNA binding central_nervous_system(1) 1 AACTGTCCACCCAGCCGGCCA 0.642000 CKAP4 10970 broad.mit.edu 37 12 106633919 106633919 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr12:106633919G>A uc001tlk.2 - 2 776 c.692C>T c.(691-693)ACG>ATG p.T231M NM_006825 NP_006816 Q07065 CKAP4_HUMAN cytoskeleton-associated protein 4 231 ER-Golgi intermediate compartment membrane|integral to membrane|membrane fraction 0 CTCCAGGGACGTGAAGTCCCG 0.562000 DACT1 51339 broad.mit.edu 37 14 59113462 59113462 + Silent SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr14:59113462G>A uc001xdw.2 + 4 2285 c.2121G>A c.(2119-2121)GCG>GCA p.A707A DACT1_uc010trv.1_Silent_p.A426A|DACT1_uc001xdx.2_Silent_p.A670A|DACT1_uc010trw.1_Silent_p.A426A NM_016651 NP_057735 Q9NYF0 DACT1_HUMAN dapper 1 isoform 1 707 multicellular organismal development|Wnt receptor signaling pathway cytoplasm|nucleus large_intestine(2)|lung(2)|ovary(1) 5 TGTACCCCGCGCCTGTGCCTC 0.677000 ZSCAN10 84891 broad.mit.edu 37 16 3140151 3140151 + Silent SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr16:3140151G>A uc002ctv.1 - 5 1207 c.1119C>T c.(1117-1119)TCC>TCT p.S373S ZSCAN10_uc002cty.1_Silent_p.S34S|ZSCAN10_uc002ctw.1_Silent_p.S291S|ZSCAN10_uc002ctx.1_Silent_p.S301S NM_032805 NP_116194 Q96SZ4 ZSC10_HUMAN zinc finger and SCAN domain containing 10 373 negative regulation of transcription, DNA-dependent|viral reproduction nucleus sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding ovary(1) 1 AGGCGGGTTCGGAGGAGTGGG 0.716000 GDPD3 79153 broad.mit.edu 37 16 30119574 30119574 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr16:30119574C>T uc002dwp.2 - 9 858 c.779G>A c.(778-780)AGG>AAG p.R260K uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|GDPD3_uc002dwq.2_Missense_Mutation_p.R198K NM_024307 NP_077283 Q7L5L3 GDPD3_HUMAN glycerophosphodiester phosphodiesterase domain 260 GDPD.|Cytoplasmic (Potential). glycerol metabolic process|lipid metabolic process integral to membrane glycerophosphodiester phosphodiesterase activity|metal ion binding 0 CAGACTCTTCCTCATGATCAG 0.557000 CCDC47 57003 broad.mit.edu 37 17 61838708 61838708 + Missense_Mutation SNP T T C TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr17:61838708T>C uc002jbs.3 - 5 887 c.551A>G c.(550-552)GAT>GGT p.D184G CCDC47_uc010ddx.2_Missense_Mutation_p.D184G|CCDC47_uc002jbt.2_Missense_Mutation_p.D184G NM_020198 NP_064583 Q96A33 CCD47_HUMAN coiled-coil domain containing 47 precursor 184 integral to membrane protein binding 0 AGTTCCATCATCCCCTAGGGG 0.358000 SDK2 54549 broad.mit.edu 37 17 71389865 71389865 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr17:71389865C>T uc010dfm.2 - 27 3732 c.3732G>A c.(3730-3732)TCG>TCA p.S1244S SDK2_uc002jjt.3_Silent_p.S403S|SDK2_uc010dfn.2_Silent_p.S923S NM_001144952 NP_001138424 Q58EX2 SDK2_HUMAN sidekick 2 1244 Fibronectin type-III 7.|Extracellular (Potential). cell adhesion integral to membrane ovary(2) 2 GCTGGGTGTCCGAGTCCTTCT 0.592000 ZNF396 252884 broad.mit.edu 37 18 32949588 32949588 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr18:32949588G>A uc010xcf.1 - 4 731 c.599C>T c.(598-600)TCA>TTA p.S200L NM_145756 NP_665699 Q96N95 ZN396_HUMAN zinc finger protein 396 200 viral reproduction cytoplasm|nucleus DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding 0 CTTTTGCCTTGAAGCAGATTT 0.358000 ALPK2 115701 broad.mit.edu 37 18 56247279 56247279 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr18:56247279C>T uc002lhj.3 - 4 943 c.729G>A c.(727-729)ACG>ACA p.T243T NM_052947 NP_443179 Q86TB3 ALPK2_HUMAN heart alpha-kinase 243 ATP binding|protein serine/threonine kinase activity ovary(7)|skin(5)|lung(1)|central_nervous_system(1) 14 GGTCACCATCCGTGAACTTTG 0.403000 MUC16 94025 broad.mit.edu 37 19 9008193 9008193 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:9008193C>T uc002mkp.2 - 41 39563 c.39359G>A c.(39358-39360)CGG>CAG p.R13120Q MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron NM_024690 NP_078966 Q8WXI7 MUC16_HUMAN mucin 16 13122 Extracellular (Potential).|SEA 7. cell adhesion extracellular space|extrinsic to membrane|integral to membrane|plasma membrane protein binding lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1) 57 GAGACTGTTCCGGTCCAGGGT 0.542000 MUC16 94025 broad.mit.edu 37 19 9015712 9015712 + Missense_Mutation SNP T T G TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:9015712T>G uc002mkp.2 - 29 38315 c.38111A>C c.(38110-38112)AAC>ACC p.N12704T MUC16_uc010xki.1_5'Flank NM_024690 NP_078966 Q8WXI7 MUC16_HUMAN mucin 16 12706 SEA 5.|Extracellular (Potential). cell adhesion extracellular space|extrinsic to membrane|integral to membrane|plasma membrane protein binding lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1) 57 GATGGTGAAGTTGAGGGTGAA 0.488000 CRLF1 9244 broad.mit.edu 37 19 18709587 18709587 + Missense_Mutation SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:18709587C>A uc010ebt.1 - 3 716 c.522G>T c.(520-522)AAG>AAT p.K174N NM_004750 NP_004741 O75462 CRLF1_HUMAN cytokine receptor-like factor 1 precursor 174 Fibronectin type-III 1. negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein extracellular space cytokine binding|protein heterodimerization activity|receptor activity central_nervous_system(1) 1 CCAACCTAAGCTTGTACTTGA 0.607000 ATP1A3 478 broad.mit.edu 37 19 42479904 42479904 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:42479904C>T uc002osg.2 - 16 2294 c.2140G>A c.(2140-2142)GCT>ACT p.A714T ATP1A3_uc010xwf.1_Missense_Mutation_p.A725T|ATP1A3_uc010xwg.1_Missense_Mutation_p.A684T|ATP1A3_uc010xwh.1_Missense_Mutation_p.A727T|ATP1A3_uc002osh.2_Missense_Mutation_p.A714T NM_152296 NP_689509 P13637 AT1A3_HUMAN Na+/K+ -ATPase alpha 3 subunit 714 Cytoplasmic (Potential). ATP biosynthetic process endoplasmic reticulum|Golgi apparatus ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity ovary(1)|pancreas(1) 2 TTCTTCAGAGCGGGGGAGTCG 0.532000 CCDC8 83987 broad.mit.edu 37 19 46915005 46915005 + Missense_Mutation SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:46915005C>A uc002pep.2 - 1 1915 c.1063G>T c.(1063-1065)GCT>TCT p.A355S NM_032040 NP_114429 Q9H0W5 CCDC8_HUMAN coiled-coil domain containing 8 355 Potential. plasma membrane ovary(3) 3 OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421) TTATCTGCAGCCTCTGCCCCC 0.617000 ELSPBP1 64100 broad.mit.edu 37 19 48519257 48519257 + Missense_Mutation SNP T T G TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:48519257T>G uc002pht.2 + 4 471 c.316T>G c.(316-318)TTC>GTC p.F106V NM_022142 NP_071425 Q96BH3 ESPB1_HUMAN epididymal sperm binding protein 1 precursor 106 Fibronectin type-II 2. single fertilization extracellular region 0 all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203) OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606) CACCTCTGTCTTCGATGAGAA 0.517000 C19orf41 126123 broad.mit.edu 37 19 50662827 50662827 + Silent SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:50662827C>A uc002prp.1 - 3 405 c.318G>T c.(316-318)CTG>CTT p.L106L NM_152358 NP_689571 Q6UXV1 IZUM2_HUMAN hypothetical protein LOC126123 precursor 106 Extracellular (Potential). integral to membrane 0 all_neural(266;0.0459)|Ovarian(192;0.0728) GBM - Glioblastoma multiforme(134;0.00364)|OV - Ovarian serous cystadenocarcinoma(262;0.0052) GCTCTTCCAGCAGAGGCTCAT 0.453000 CACNG7 59284 broad.mit.edu 37 19 54445295 54445295 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:54445295C>T uc002qcr.1 + 5 591 c.576C>T c.(574-576)GCC>GCT p.A192A NM_031896 NP_114102 P62955 CCG7_HUMAN voltage-dependent calcium channel gamma-7 192 Helical; (Potential). GAGVMSVYLFTKRYAEEEMYRPHPAFYRPRLSDCSDYSGQF LQPEAWRRGRSPSDISSDVSIQMTQNYPPAIKYPDHLHIST SPC -> VTSVGPRL (in Ref. 1; AAK20030). regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex voltage-gated calcium channel activity ovary(1) 1 all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218) GBM - Glioblastoma multiforme(134;0.0711) CGCAGGGGGCCGGCGTGATGT 0.647000 FCAR 2204 broad.mit.edu 37 19 55401080 55401080 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr19:55401080G>A uc002qhr.1 + 5 912 c.715G>A c.(715-717)GTG>ATG p.V239M FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Missense_Mutation_p.V190M|FCAR_uc010esi.1_Missense_Mutation_p.V116M|FCAR_uc002qhu.1_Missense_Mutation_p.V143M|FCAR_uc002qhv.1_Missense_Mutation_p.V217M|FCAR_uc002qhw.1_Missense_Mutation_p.V227M|FCAR_uc002qhx.1_Missense_Mutation_p.V131M|FCAR_uc002qhy.1_Missense_Mutation_p.V205M|FCAR_uc002qhz.1_Missense_Mutation_p.R202H|FCAR_uc002qia.1_Missense_Mutation_p.V130M NM_002000 NP_001991 P24071 FCAR_HUMAN Fc alpha receptor isoform a precursor 239 Helical; (Potential). immune response extracellular region|integral to plasma membrane IgA binding|receptor activity ovary(1)|skin(1) 2 GBM - Glioblastoma multiforme(193;0.0443) ACTGGTCCTCGTGGCTCTCTT 0.537000 NCOA1 8648 broad.mit.edu 37 2 24964753 24964753 + Missense_Mutation SNP T T A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr2:24964753T>A uc002rfk.2 + 17 3662 c.3404T>A c.(3403-3405)ATG>AAG p.M1135K NCOA1_uc010eye.2_Missense_Mutation_p.M1135K|NCOA1_uc002rfi.2_Missense_Mutation_p.M984K|NCOA1_uc002rfj.2_Missense_Mutation_p.M1135K|NCOA1_uc002rfl.2_Missense_Mutation_p.M1135K|NCOA1_uc010eyf.2_Missense_Mutation_p.M28K NM_003743 NP_003734 Q15788 NCOA1_HUMAN nuclear receptor coactivator 1 isoform 1 1135 Gln-rich. PAX3/NCOA1(8) soft_tissue(8)|ovary(1)|lung(1)|skin(1) 11 Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215) GCCATGCTTATGAGGCAGCAA 0.542000 T PAX3 alveolar rhadomyosarcoma MYH7B 57644 broad.mit.edu 37 20 33575071 33575071 + Silent SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr20:33575071G>A uc002xbi.1 + 14 1346 c.1254G>A c.(1252-1254)GCG>GCA p.A418A NM_020884 NP_065935 A7E2Y1 MYH7B_HUMAN myosin, heavy polypeptide 7B, cardiac muscle, 376 Myosin head-like. membrane|myosin filament actin binding|ATP binding|motor activity ovary(1)|breast(1) 2 BRCA - Breast invasive adenocarcinoma(18;0.00691) AGGAGCAGGCGGAGGCCGATG 0.567000 ZNF335 63925 broad.mit.edu 37 20 44592422 44592422 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr20:44592422C>T uc002xqw.2 - 8 1433 c.1310G>A c.(1309-1311)CGC>CAC p.R437H ZNF335_uc010zxk.1_Missense_Mutation_p.R282H NM_022095 NP_071378 Q9H4Z2 ZN335_HUMAN zinc finger protein 335 437 regulation of transcription, DNA-dependent|transcription, DNA-dependent nucleus DNA binding|zinc ion binding skin(3)|ovary(1) 4 Myeloproliferative disorder(115;0.0122) TCGACCTCGGCGCCGGGGCAG 0.617000 PREX1 57580 broad.mit.edu 37 20 47260992 47260992 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr20:47260992C>T uc002xtw.1 - 27 3579 c.3556G>A c.(3556-3558)GTG>ATG p.V1186M PREX1_uc002xtv.1_Missense_Mutation_p.V483M NM_020820 NP_065871 Q8TCU6 PREX1_HUMAN phosphatidylinositol-3,4, 1186 actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process cytosol|plasma membrane enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity lung(3)|ovary(2)|pancreas(1) 6 BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198) TTACTTCTCACGCTGGTGTAG 0.602000 GNAS 2778 broad.mit.edu 37 20 57415370 57415370 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr20:57415370G>A uc002xzt.2 + 1 576 c.209G>A c.(208-210)CGC>CAC p.R70H GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank NM_016592 NP_057676 P63092 GNAS2_HUMAN GNAS complex locus NESP55 70 activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1) 292 all_lung(29;0.0104) BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109) GCCCACCACCGCTCCGGCGCC 0.677000 Mis pituitary adenoma McCune-Albright syndrome; pseudohypoparathyroidism|type IA 3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome TSP Lung(22;0.16) COL20A1 57642 broad.mit.edu 37 20 61943088 61943088 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr20:61943088C>T uc011aau.1 + 13 1751 c.1651C>T c.(1651-1653)CGT>TGT p.R551C COL20A1_uc011aav.1_Missense_Mutation_p.R372C NM_020882 NP_065933 Q9P218 COKA1_HUMAN collagen, type XX, alpha 1 551 Fibronectin type-III 3. cell adhesion collagen|extracellular space structural molecule activity central_nervous_system(1) 1 all_cancers(38;1.39e-10) CCGGGGCATCCGTGCCAGGAC 0.697000 MYO18B 84700 broad.mit.edu 37 22 26194047 26194047 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr22:26194047C>T uc003abz.1 + 12 2754 c.2504C>T c.(2503-2505)GCG>GTG p.A835V MYO18B_uc003aca.1_Missense_Mutation_p.A716V|MYO18B_uc010guy.1_Missense_Mutation_p.A716V|MYO18B_uc010guz.1_Missense_Mutation_p.A716V|MYO18B_uc011aka.1_Intron|MYO18B_uc011akb.1_Missense_Mutation_p.A348V NM_032608 NP_115997 Q8IUG5 MY18B_HUMAN myosin XVIIIB 835 Myosin head-like. A -> G (in a lung squamous cell carcinoma sample; somatic mutation). nucleus|sarcomere|unconventional myosin complex actin binding|ATP binding|motor activity ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2) 12 CACCTGGGTGCGGCGGGGGCC 0.662000 PDHB 5162 broad.mit.edu 37 3 58413835 58413835 + Missense_Mutation SNP T T C TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr3:58413835T>C uc003dkf.3 - 10 1035 c.1006A>G c.(1006-1008)AAG>GAG p.K336E PDHB_uc003dke.3_Missense_Mutation_p.K294E|PDHB_uc003dkg.3_Missense_Mutation_p.K318E|PDHB_uc010hnl.2_3'UTR|PDHB_uc011bff.1_Missense_Mutation_p.K318E NM_000925 NP_000916 P11177 ODPB_HUMAN pyruvate dehydrogenase (lipoamide) beta 336 glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate|tricarboxylic acid cycle mitochondrial matrix pyruvate dehydrogenase (acetyl-transferring) activity ovary(1)|central_nervous_system(1) 2 BRCA - Breast invasive adenocarcinoma(55;0.000179)|Kidney(10;0.00231)|KIRC - Kidney renal clear cell carcinoma(10;0.00258)|OV - Ovarian serous cystadenocarcinoma(275;0.187) NADH(DB00157)|Pyruvic acid(DB00119) TCTAGAATCTTTGCATAAGGC 0.413000 ABLIM2 84448 broad.mit.edu 37 4 8009905 8009905 + Missense_Mutation SNP A A G TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr4:8009905A>G uc003gko.2 - 15 1540 c.1397T>C c.(1396-1398)CTC>CCC p.L466P ABLIM2_uc003gkk.2_Missense_Mutation_p.L130P|ABLIM2_uc003gkl.2_Missense_Mutation_p.L194P|ABLIM2_uc003gkj.3_Missense_Mutation_p.L500P|ABLIM2_uc003gkm.3_Missense_Mutation_p.L414P|ABLIM2_uc003gkp.2_Missense_Mutation_p.L425P|ABLIM2_uc003gkq.2_Missense_Mutation_p.L466P|ABLIM2_uc003gkr.2_Missense_Mutation_p.L415P|ABLIM2_uc003gks.3_Missense_Mutation_p.L426P|MIR95_hsa-mir-95|MI0000097_5'Flank NM_001130084 NP_001123556 Q6H8Q1 ABLM2_HUMAN actin binding LIM protein family, member 2 466 axon guidance|cytoskeleton organization actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus actin binding|zinc ion binding pancreas(3) 3 ATCCCCCTTGAGCATCAGCCA 0.522000 KCTD8 386617 broad.mit.edu 37 4 44176968 44176968 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr4:44176968G>A uc003gwu.2 - 2 1545 c.1261C>T c.(1261-1263)CGG>TGG p.R421W NM_198353 NP_938167 Q6ZWB6 KCTD8_HUMAN potassium channel tetramerisation domain 421 cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex voltage-gated potassium channel activity central_nervous_system(2)|ovary(1) 3 TTTGTTTCCCGGGACTTGCTG 0.413000 HNSCC(17;0.042) LPHN3 23284 broad.mit.edu 37 4 62812713 62812713 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr4:62812713C>T uc010ihh.2 + 13 2470 c.2297C>T c.(2296-2298)ACG>ATG p.T766M LPHN3_uc003hcq.3_Missense_Mutation_p.T766M|LPHN3_uc003hct.2_Missense_Mutation_p.T159M NM_015236 NP_056051 Q9HAR2 LPHN3_HUMAN latrophilin 3 precursor 753 Extracellular (Potential). neuropeptide signaling pathway integral to membrane|plasma membrane G-protein coupled receptor activity|sugar binding lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1) 18 AAGTTGGGAACGGAAGCTTTG 0.403000 KIAA1109 84162 broad.mit.edu 37 4 123178476 123178476 + Missense_Mutation SNP A A C TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr4:123178476A>C uc003ieh.2 + 39 6490 c.6445A>C c.(6445-6447)AAG>CAG p.K2149Q KIAA1109_uc003iel.1_Missense_Mutation_p.K84Q|KIAA1109_uc003iek.2_Missense_Mutation_p.K768Q NM_015312 NP_056127 Q2LD37 K1109_HUMAN fragile site-associated protein 2149 regulation of cell growth|regulation of epithelial cell differentiation integral to membrane|nucleus ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1) 12 GCAGTGGATGAAGTTTATTGT 0.418000 FAT4 79633 broad.mit.edu 37 4 126240497 126240497 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr4:126240497C>T uc003ifj.3 + 1 2931 c.2931C>T c.(2929-2931)TCC>TCT p.S977S NM_024582 NP_078858 Q6V0I7 FAT4_HUMAN FAT tumor suppressor homolog 4 precursor 977 Cadherin 9.|Extracellular (Potential). homophilic cell adhesion integral to membrane|plasma membrane calcium ion binding ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2) 18 CACAGCTCTCCTCTAGTGTCA 0.448000 CDH12 1010 broad.mit.edu 37 5 22078727 22078727 + Missense_Mutation SNP A A G TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr5:22078727A>G uc010iuc.2 - 2 517 c.59T>C c.(58-60)CTA>CCA p.L20P CDH12_uc011cno.1_Missense_Mutation_p.L20P|CDH12_uc003jgk.2_Missense_Mutation_p.L20P NM_004061 NP_004052 P55289 CAD12_HUMAN cadherin 12, type 2 preproprotein 20 adherens junction organization|cell junction assembly|homophilic cell adhesion integral to membrane|plasma membrane calcium ion binding ovary(2) 2 TAGTGGTGTTAGGAGACCTCC 0.448000 HNSCC(59;0.17) DEPDC1B 55789 broad.mit.edu 37 5 59899243 59899243 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr5:59899243C>T uc003jsh.2 - 9 1290 c.1217G>A c.(1216-1218)CGT>CAT p.R406H DEPDC1B_uc011cqm.1_Missense_Mutation_p.R406H|DEPDC1B_uc011cqn.1_Missense_Mutation_p.R379H NM_018369 NP_060839 Q8WUY9 DEP1B_HUMAN DEP domain containing 1B isoform 1 406 regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction cytosol GTPase activator activity ovary(1) 1 Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17) ATGAGCCACACGCTCCTCTAT 0.433000 PPIP5K2 23262 broad.mit.edu 37 5 102490450 102490450 + Splice_Site SNP G G T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr5:102490450G>T uc003kod.3 + 12 1812 c.1293_splice c.e12+1 p.Q431_splice PPIP5K2_uc011cva.1_Splice_Site|PPIP5K2_uc003koe.2_Splice_Site_p.Q431_splice|PPIP5K2_uc010jbo.1_Splice_Site_p.Q353_splice NM_015216 NP_056031 O43314 VIP2_HUMAN Histidine acid phosphatase domain containing 1 inositol metabolic process cytosol acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity ovary(1)|skin(1) 2 ACAGTTACAGGCAAGTGTATT 0.229000 LOC153328 153328 broad.mit.edu 37 5 135188428 135188428 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr5:135188428C>T uc003laz.1 + 4 511 c.339C>T c.(337-339)GCC>GCT p.A113A LOC153328_uc003lba.2_Silent_p.A113A Q6ZT89 S2548_HUMAN RecName: Full=Putative mitochondrial carrier protein FLJ44862; 113 Helical; Name=3; (Potential).|Solcar 2. transmembrane transport integral to membrane|mitochondrial inner membrane binding 0 KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233) GCATGGTGGCCGGCGTGGTCT 0.662000 PCDHA5 56143 broad.mit.edu 37 5 140202806 140202806 + Silent SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr5:140202806C>T uc003lhl.2 + 1 1446 c.1446C>T c.(1444-1446)GAC>GAT p.D482D PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.D482D|PCDHA5_uc003lhj.1_Silent_p.D482D NM_018908 NP_061731 Q9Y5H7 PCDA5_HUMAN protocadherin alpha 5 isoform 1 precursor 482 Extracellular (Potential).|Cadherin 5. homophilic cell adhesion|nervous system development integral to plasma membrane calcium ion binding|protein binding ovary(1)|breast(1)|skin(1) 3 KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191) GGGACGCGGACGCGCAGGAGA 0.667000 PCDHA11 56138 broad.mit.edu 37 5 140250862 140250862 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr5:140250862C>T uc003lia.2 + 1 3032 c.2174C>T c.(2173-2175)ACG>ATG p.T725M PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.T725M NM_018902 NP_061725 Q9Y5I1 PCDAB_HUMAN protocadherin alpha 11 isoform 1 precursor 725 Cytoplasmic (Potential). homophilic cell adhesion|nervous system development integral to plasma membrane calcium ion binding|protein binding breast(1) 1 KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191) TGGTCGGCAACGCCCACTGAG 0.667000 LY86 9450 broad.mit.edu 37 6 6589058 6589058 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:6589058G>A uc003mwy.1 + 1 125 c.91G>A c.(91-93)GTG>ATG p.V31M LOC285780_uc003mww.3_Intron|LOC285780_uc003mwx.2_Intron NM_004271 NP_004262 O95711 LY86_HUMAN MD-1, RP105-associated precursor 31 apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response extracellular space|plasma membrane 0 Ovarian(93;0.0377) GCCCACACACGTGGTCTGTAG 0.577000 TNXB 7148 broad.mit.edu 37 6 32035444 32035444 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:32035444C>T uc003nzl.2 - 18 6740 c.6538G>A c.(6538-6540)GTC>ATC p.V2180I NM_019105 NP_061978 P22105 TENX_HUMAN tenascin XB isoform 1 precursor 2252 actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction extracellular space|intracellular|proteinaceous extracellular matrix heparin binding|integrin binding 0 TCACCCGTGACGCCCACAGCA 0.637000 COL12A1 1303 broad.mit.edu 37 6 75847211 75847211 + Missense_Mutation SNP C C T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:75847211C>T uc003phs.2 - 31 5502 c.5336G>A c.(5335-5337)CGT>CAT p.R1779H COL12A1_uc003pht.2_Missense_Mutation_p.R615H NM_004370 NP_004361 Q99715 COCA1_HUMAN collagen, type XII, alpha 1 long isoform 1779 Fibronectin type-III 13. cell adhesion|collagen fibril organization|skeletal system development collagen type XII|extracellular space extracellular matrix structural constituent conferring tensile strength ovary(6)|large_intestine(1)|breast(1)|skin(1) 9 TTTCTGCACACGACCACTAGC 0.403000 NT5E 4907 broad.mit.edu 37 6 86197098 86197098 + Missense_Mutation SNP A A T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:86197098A>T uc003pko.3 + 5 1551 c.995A>T c.(994-996)GAT>GTT p.D332V NT5E_uc010kbr.2_Missense_Mutation_p.D332V NM_002526 NP_002517 P21589 5NTD_HUMAN 5' nucleotidase, ecto precursor 332 DNA metabolic process|purine base metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process anchored to membrane|cytoplasm|membrane fraction|plasma membrane 5'-nucleotidase activity|nucleotide binding ovary(3)|central_nervous_system(1) 4 all_cancers(76;0.000215)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0427) BRCA - Breast invasive adenocarcinoma(108;0.0417) Pentoxifylline(DB00806) ATAAAATTGGATAATTATTCT 0.378000 EPHA7 2045 broad.mit.edu 37 6 93955108 93955108 + Missense_Mutation SNP T T A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:93955108T>A uc003poe.2 - 16 3031 c.2790A>T c.(2788-2790)GAA>GAT p.E930D EPHA7_uc003pof.2_Missense_Mutation_p.E925D|EPHA7_uc011eac.1_Missense_Mutation_p.E926D NM_004440 NP_004431 Q15375 EPHA7_HUMAN ephrin receptor EphA7 precursor 930 Cytoplasmic (Potential).|SAM. integral to plasma membrane ATP binding|ephrin receptor activity lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1) 28 all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142) BRCA - Breast invasive adenocarcinoma(108;0.0847) CTTGTAGCCATTCTCCAACTG 0.383000 POPDC3 64208 broad.mit.edu 37 6 105606547 105606547 + Missense_Mutation SNP C C T rs111547826 TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:105606547C>T uc003prb.2 - 4 1076 c.674G>A c.(673-675)CGC>CAC p.R225H uc003pqz.2_Intron|POPDC3_uc003pra.2_RNA NM_022361 NP_071756 Q9HBV1 POPD3_HUMAN popeye protein 3 225 integral to membrane skin(3)|ovary(2) 5 all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238) GGAGATGTAGCGATGCTGAGC 0.398000 AKD1 221264 broad.mit.edu 37 6 109871483 109871483 + Missense_Mutation SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:109871483C>A uc003ptn.2 - 25 2851 c.2774G>T c.(2773-2775)AGA>ATA p.R925I AKD1_uc011eat.1_Missense_Mutation_p.R4I NM_001145128 NP_001138600 Q5TCS8 AKD1_HUMAN adenylate kinase domain containing 1 isoform 1 925 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity ovary(1) 1 ATGCCTCTTTCTCTCCTTCAT 0.368000 PLG 5340 broad.mit.edu 37 6 161152156 161152156 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr6:161152156G>A uc003qtm.3 + 11 1393 c.1330G>A c.(1330-1332)GTC>ATC p.V444I NM_000301 NP_000292 P00747 PLMN_HUMAN plasminogen 444 Kringle 4. extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen apolipoprotein binding|cell surface binding|serine-type endopeptidase activity skin(3)|ovary(1) 4 OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06) Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013) AGACCCCAGCGTCAGGTGGGA 0.502000 EIF3B 8662 broad.mit.edu 37 7 2416710 2416710 + Silent SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr7:2416710G>A uc003slx.2 + 15 2237 c.2154G>A c.(2152-2154)AAG>AAA p.K718K EIF3B_uc003sly.2_Silent_p.K718K|EIF3B_uc003sma.2_Silent_p.K446K|EIF3B_uc003smb.2_RNA NM_003751 NP_003742 P55884 EIF3B_HUMAN eukaryotic translation initiation factor 3, 718 regulation of translational initiation cytosol|eukaryotic translation initiation factor 3 complex nucleotide binding|protein complex scaffold|translation initiation factor activity 0 Ovarian(82;0.0253) UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14) AACAGATCAAGGTCAGCATGC 0.592000 TAX1BP1 8887 broad.mit.edu 37 7 27831706 27831706 + Missense_Mutation SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr7:27831706G>A uc003szl.2 + 9 1278 c.1120G>A c.(1120-1122)GCT>ACT p.A374T TAX1BP1_uc011jzo.1_Missense_Mutation_p.A374T|TAX1BP1_uc003szk.2_Missense_Mutation_p.A374T|TAX1BP1_uc011jzp.1_Missense_Mutation_p.A217T NM_006024 NP_006015 Q86VP1 TAXB1_HUMAN Tax1 (human T-cell leukemia virus type I) 374 Oligomerization.|Potential. anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production cytosol identical protein binding|kinase binding|zinc ion binding breast(1) 1 GBM - Glioblastoma multiforme(3;0.0823) TGTCTTTCTGGCTAAAGAACT 0.433000 PAG1 55824 broad.mit.edu 37 8 81889066 81889066 + Nonsense_Mutation SNP C C A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chr8:81889066C>A uc003ybz.2 - 9 1723 c.1012G>T c.(1012-1014)GAG>TAG p.E338* NM_018440 NP_060910 Q9NWQ8 PAG1_HUMAN phosphoprotein associated with glycosphingolipid 338 Cytoplasmic (Potential). epidermal growth factor receptor signaling pathway|intracellular signal transduction|T cell receptor signaling pathway integral to membrane|intracellular|membrane raft|plasma membrane SH2 domain binding|SH3/SH2 adaptor activity 0 Lung NSC(7;5.76e-06)|all_lung(9;2e-05) BRCA - Breast invasive adenocarcinoma(6;0.0567)|Epithelial(68;0.0634)|all cancers(69;0.197) TAGGTGGACTCCGGAACTGTA 0.453000 ASMT 438 broad.mit.edu 37 X 1755356 1755356 + Silent SNP G G A TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chrX:1755356G>A uc004cqd.2 + 9 958 c.813G>A c.(811-813)CCG>CCA p.P271P ASMT_uc010ncy.2_Silent_p.P271P|ASMT_uc004cqe.2_Silent_p.P196P NM_004043 NP_004034 P46597 HIOM_HUMAN acetylserotonin O-methyltransferase 243 melatonin biosynthetic process|translation cytosol acetylserotonin O-methyltransferase activity|S-methyltransferase activity skin(1) 1 all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122) ACCCTCTTCCGGAAGCTGATC 0.537000 CLCN4 1183 broad.mit.edu 37 X 10176607 10176607 + Missense_Mutation SNP A A T TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chrX:10176607A>T uc004csy.3 + 9 1796 c.1366A>T c.(1366-1368)ACC>TCC p.T456S CLCN4_uc011mid.1_Missense_Mutation_p.T362S NM_001830 NP_001821 P51793 CLCN4_HUMAN chloride channel 4 456 Helical; (By similarity). early endosome membrane|integral to membrane|late endosome membrane antiporter activity|ATP binding|voltage-gated chloride channel activity ovary(2)|lung(2)|upper_aerodigestive_tract(1) 5 AATCGTCGTTACCATATTTAC 0.522000 USP51 158880 broad.mit.edu 37 X 55513741 55513741 + Silent SNP T T C TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chrX:55513741T>C uc004dun.1 - 2 1711 c.1632A>G c.(1630-1632)CCA>CCG p.P544P USP51_uc011moo.1_Silent_p.P248P NM_201286 NP_958443 Q70EK9 UBP51_HUMAN ubiquitin specific protease 51 544 ubiquitin-dependent protein catabolic process cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding ovary(1)|lung(1)|breast(1) 3 AGGGGATTCCTGGTATGTGGT 0.517000 AVPR2 554 broad.mit.edu 37 X 153171867 153171882 + Splice_Site DEL GAAGGTGGGTGTAGCC GAAGGTGGGTGTAGCC - TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chrX:153171866_153171881GGAAGGTGGGTGTAGCC>G uc004fjh.4 + 2 1082 c.910_splice c.e2+1 p.G304_splice AVPR2_uc004fjg.4_Splice_Site_p.G93_splice|AVPR2_uc004fji.3_Frame_Shift_Del_p.L302fs NM_000054 NP_000045 P30518 V2R_HUMAN Homo sapiens arginine vasopressin receptor 2 (AVPR2), transcript variant 1, mRNA. 304 G-protein signaling, coupled to cAMP nucleotide second messenger|activation of adenylate cyclase activity|excretion|hemostasis|positive regulation of gene expression|transmembrane transport|water transport Golgi apparatus|endoplasmic reticulum|endosome|integral to plasma membrane vasopressin receptor activity breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(12)|ovary(1)|skin(1) 26 all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05) Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067) AGGCACCTCTGGAAGGTGGGTGTAGCCGTGGCTAGG 0.648 AVPR2 554 broad.mit.edu 37 X 153171867 153171882 + Splice_Site DEL GAAGGTGGGTGTAGCC GAAGGTGGGTGTAGCC - TCGA-HU-A4GY-01A-21D-A24D-08 TCGA-HU-A4GY-10A-01D-A24F-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03e36fad-0e6d-4a8c-a004-7e47a9b4e4bc e153477b-f9d3-43e6-9dfc-40f1fd9f42ab g.chrX:153171866_153171881GGAAGGTGGGTGTAGCC>G uc004fjh.4 + 2 1082 c.910_splice c.e2+1 p.G304_splice AVPR2_uc004fjg.4_Splice_Site_p.G93_splice|AVPR2_uc004fji.3_Frame_Shift_Del_p.L302fs NM_000054 NP_000045 P30518 V2R_HUMAN Homo sapiens arginine vasopressin receptor 2 (AVPR2), transcript variant 1, mRNA. 304 G-protein signaling, coupled to cAMP nucleotide second messenger|activation of adenylate cyclase activity|excretion|hemostasis|positive regulation of gene expression|transmembrane transport|water transport Golgi apparatus|endoplasmic reticulum|endosome|integral to plasma membrane vasopressin receptor activity breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(12)|ovary(1)|skin(1) 26 all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05) Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067) AGGCACCTCTGGAAGGTGGGTGTAGCCGTGGCTAGG 0.648