Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
GPR98	0	genome.wustl.edu	37	5	90106396	90106396	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	5	90106396	90106396	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.15319	p.V5107I	0.007	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	tier1	-	-	18	0	0.00	20	16	44.44	84	0	0.00	45	48	51.61
RPA1	0	genome.wustl.edu	37	17	1782517	1782517	+	Nonsense_Mutation	SNP	T	T	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	17	1782517	1782517	T	A	SNP	RPA1	ENST00000254719	human	ensembl	74_37	+1	known	nonsense	c.768	p.Y256*	0.989	pfam_-bd_OB_tR,superfamily_-bd_OB-fold,tigrfam_Rep_factor_Rpa1	pfam_Rep_factor-A_C,pfam_Rep_factor-A_N,pfam_-bd_OB_tR,superfamily_-bd_OB-fold,tigrfam_Rep_factor_Rpa1	-	no_errors	RPA1	HGNC	ENSG00000132383	tier1	-	-	23	0	0.00	8	23	74.19	105	0	0.00	51	42	45.16
ZNF285	0	genome.wustl.edu	37	19	44891263	44891263	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	19	44891263	44891263	C	A	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.1144	p.D382Y	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	tier1	-	-	90	0	0.00	48	47	49.47	40	0	0.00	21	25	54.35
TMPRSS11D	0	genome.wustl.edu	37	4	68708322	68708322	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	4	68708322	68708322	A	T	SNP	TMPRSS11D	ENST00000283916	human	ensembl	74_37	-1	known	missense	c.271	p.S91T	0.757	pirsf_Pept_S1A_HAT/DESC1,pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_SEA_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802	tier1	-	-	18	0	0.00	46	9	16.36	73	0	0.00	45	16	26.23
SFXN2	0	genome.wustl.edu	37	10	104497506	104497506	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	10	104497506	104497506	A	G	SNP	SFXN2	ENST00000369893	human	ensembl	74_37	+1	known	missense	c.956	p.N319S	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398	tier1	rs201424155	GMAF=0.0005	29	0	0.00	28	29	50.88	74	0	0.00	50	40	44.44
CREB3L3	0	genome.wustl.edu	37	19	4171147	4171147	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	19	4171147	4171147	C	T	SNP	CREB3L3	ENST00000078445	human	ensembl	74_37	+1	known	missense	c.950	p.S317L	0.925	NULL	pfam_bZIP,superfamily_TF_D-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	tier1	-	-	40	0	0.00	33	35	51.47	62	0	0.00	20	12	37.50
PSMD3	0	genome.wustl.edu	37	17	38146359	38146359	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	17	38146359	38146359	C	G	SNP	PSMD3	ENST00000264639	human	ensembl	74_37	+1	known	missense	c.890	p.A297G	1.000	smart_PAM	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344	tier1	-	-	53	0	0.00	45	35	43.75	80	1	1.23	36	37	50.68
OR5P2	0	genome.wustl.edu	37	11	7817816	7817816	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	11	7817816	7817816	C	T	SNP	OR5P2	ENST00000329434	human	ensembl	74_37	-1	known	missense	c.674	p.R225H	0.435	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	tier1	-	-	37	0	0.00	30	27	46.55	67	0	0.00	51	38	42.70
SETX	0	genome.wustl.edu	37	9	135202975	135202975	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	9	135202975	135202975	C	A	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.4010	p.R1337I	0.923	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290	tier1	-	-	29	0	0.00	45	38	45.78	51	0	0.00	36	25	40.32
OTX1	0	genome.wustl.edu	37	2	63283301	63283301	+	Silent	SNP	T	T	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	2	63283301	63283301	T	A	SNP	OTX1	ENST00000282549	human	ensembl	74_37	+1	known	silent	c.915	p.G305	0.997	NULL	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx1_TF,prints_Otx_TF	-	no_errors	OTX1	HGNC	ENSG00000115507	tier1	-	-	41	0	0.00	33	29	46.77	23	0	0.00	13	9	40.91
CPEB1	0	genome.wustl.edu	37	15	83297194	83297194	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	15	83297194	83297194	G	C	SNP	CPEB1	ENST00000563800	human	ensembl	74_37	-1	putative	missense	c.17	p.A6G	0.118	NULL	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	tier1	-	-	13	0	0.00	7	16	69.57	45	0	0.00	29	27	48.21
ZNF589	0	genome.wustl.edu	37	3	48309726	48309726	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	3	48309726	48309726	A	G	SNP	ZNF589	ENST00000354698	human	ensembl	74_37	+1	known	missense	c.545	p.N182S	0.048	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF589	HGNC	ENSG00000164048	tier1	-	-	21	0	0.00	20	15	42.86	60	0	0.00	38	34	47.22
UGT2B11	0	genome.wustl.edu	37	4	70079967	70079967	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	4	70079967	70079967	C	A	SNP	UGT2B11	ENST00000446444	human	ensembl	74_37	-1	known	missense	c.474	p.E158D	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B11	HGNC	ENSG00000213759	tier1	-	-	94	0	0.00	72	59	45.04	36	0	0.00	23	29	55.77
CHD9	0	genome.wustl.edu	37	16	53302010	53302010	+	Silent	SNP	A	A	G			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	16	53302010	53302010	A	G	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	silent	c.4689	p.G1563	0.922	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_D/R_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	tier1	-	-	20	0	0.00	8	13	61.90	90	0	0.00	48	44	47.83
VWF	0	genome.wustl.edu	37	12	6184682	6184682	+	Silent	SNP	G	G	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	12	6184682	6184682	G	A	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.693	p.T231	0.136	pirsf_VWF,pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1	-	-	62	0	0.00	41	32	43.84	35	0	0.00	28	18	39.13
HERC2P3	0	genome.wustl.edu	37	15	20657785	20657785	+	R	SNP	A	A	T			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	15	20657785	20657785	A	T	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229	tier1	-	-	263	1	0.38	236	109	31.59	35	0	0.00	32	8	20.00
YWHAG	0	genome.wustl.edu	37	7	75958930	75958930	+	Silent	SNP	G	G	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	7	75958930	75958930	G	A	SNP	YWHAG	ENST00000307630	human	ensembl	74_37	-1	known	silent	c.708	p.D236	0.728	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAG	HGNC	ENSG00000170027	tier1	-	-	29	0	0.00	24	26	52.00	29	0	0.00	24	12	33.33
KRT27	0	genome.wustl.edu	37	17	38935802	38935802	+	Silent	SNP	T	T	C			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	17	38935802	38935802	T	C	SNP	KRT27	ENST00000301656	human	ensembl	74_37	-1	known	silent	c.924	p.K308	0.999	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446	tier1	-	-	49	0	0.00	29	24	45.28	63	0	0.00	41	44	51.16
HPCA	0	genome.wustl.edu	37	1	33359548	33359548	+	R	SNP	G	G	A			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	1	33359548	33359548	G	A	SNP	HPCA	ENST00000459874	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HPCA	HGNC	ENSG00000121905	tier1	-	-	19	0	0.00	10	13	56.52	51	0	0.00	33	10	23.26
DJC1	0	genome.wustl.edu	37	10	22048139	22048139	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	10	22048139	22048139	C	T	SNP	DJC1	ENST00000376980	human	ensembl	74_37	-1	known	missense	c.1556	p.R519H	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DJC1	HGNC	ENSG00000136770	tier1	-	-	37	0	0.00	20	15	42.86	69	0	0.00	40	22	35.48
WBP11P1	0	genome.wustl.edu	37	18	30093484	30093484	+	R	SNP	A	A	T			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	18	30093484	30093484	A	T	SNP	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389	tier1	-	-	28	0	0.00	25	19	43.18	52	0	0.00	37	27	42.19
MAP7D1	0	genome.wustl.edu	37	1	36636667	36636667	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	1	36636667	36636667	C	G	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	missense	c.142	p.P48A	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871	tier1	-	-	78	0	0.00	63	67	51.54	59	0	0.00	34	29	46.03
CELF4	0	genome.wustl.edu	37	18	34825066	34825066	+	R	SNP	G	G	T			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	18	34825066	34825066	G	T	SNP	CELF4	ENST00000590011	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CELF4	HGNC	ENSG00000101489	tier1	-	-	8	0	0.00	7	8	53.33	24	0	0.00	6	6	50.00
MUM1L1	0	genome.wustl.edu	37	X	105451169	105451169	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	X	105451169	105451169	T	C	SNP	MUM1L1	ENST00000337685	human	ensembl	74_37	+1	known	missense	c.1744	p.W582R	0.999	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MUM1L1	HGNC	ENSG00000157502	tier1	-	-	18	0	0.00	0	23	100.00	48	0	0.00	6	36	85.71
CAC1A	0	genome.wustl.edu	37	19	13318673	13318678	+	In_Frame_Del	DEL	CTGCTG	CTGCTG	-			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	CTGCTG	CTGCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	19	13318673	13318678	CTGCTG	-	DEL	CAC1A	ENST00000360228	human	ensembl	74_37	-1	known	in_frame_del	c.6975_6970	p.QQ2324in_frame_del	0.259:0.316:0.374:0.432:0.459:0.497	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CAC1A	HGNC	ENSG00000141837	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
SPDYE2B	0	genome.wustl.edu	37	7	102294074	102294074	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	7	102294074	102294074	T	C	SNP	SPDYE2B	ENST00000436228	human	ensembl	74_37	+1	known	missense	c.337	p.S113P	0.002	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE2B	HGNC	ENSG00000173678	tier1	-	-	8	0	0.00	6	4	40.00	0	0	0.00	0	0	0.00
ENSG00000225946	0	genome.wustl.edu	37	7	100608123	100608124	+	R	INS	-	-	G			TCGA-WK-A8XQ-01A-11D-A37C-09	TCGA-WK-A8XQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a362ed3c-3c06-4aad-8b9e-a4b46b4cbcd3	779e9645-be20-45ce-842e-6224726c5e5a	7	100608123	100608124	-	G	INS	ENSG00000225946	ENST00000420080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.037	-	-	-	no_errors	RP11-395B7.2	Clone_based_vega_gene	ENSG00000225946	tier1			12	0	0.00	12	7	36.84	87	0	0.00	84	2	2.33