Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
OR7D4	0	genome.wustl.edu	37	19	9325401	9325401	+	Missense_Mutation	SNP	G	G	A			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	19	9325401	9325401	G	A	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.113	p.T38M	0.586	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	tier1	rs148654687	-	80	0	0.00	122	24	16.44	18	0	0.00	17	3	15.00
VWF	0	genome.wustl.edu	37	12	6143932	6143932	+	Silent	SNP	C	C	T			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	12	6143932	6143932	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.2607	p.T869	0.000	pirsf_VWF,pfam_VWF_type-D,smart_VWC_out,smart_VWF_C,smart_VWF_type-D	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1	-	-	115	0	0.00	171	45	20.83	129	0	0.00	98	31	24.03
HAUS3	0	genome.wustl.edu	37	4	2241964	2241964	+	Missense_Mutation	SNP	T	T	C			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	4	2241964	2241964	T	C	SNP	HAUS3	ENST00000243706	human	ensembl	74_37	-1	known	missense	c.710	p.N237S	1.000	NULL	NULL	-	no_errors	HAUS3	HGNC	ENSG00000214367	tier1	-	-	84	0	0.00	123	24	16.33	78	0	0.00	95	26	21.49
IL1A	0	genome.wustl.edu	37	2	113535602	113535602	+	Missense_Mutation	SNP	C	C	A			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	2	113535602	113535602	C	A	SNP	IL1A	ENST00000263339	human	ensembl	74_37	-1	known	missense	c.577	p.V193L	0.048	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1_alpha,prints_IL-1_alpha/beta,prints_IL-1	pfam_IL-1_propep,pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1_alpha,prints_IL-1_alpha/beta,prints_IL-1	-	no_errors	IL1A	HGNC	ENSG00000115008	tier1	-	-	52	0	0.00	96	12	11.11	81	0	0.00	73	12	14.12
LPPR3	0	genome.wustl.edu	37	19	814640	814640	+	Missense_Mutation	SNP	C	C	G			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	19	814640	814640	C	G	SNP	LPPR3	ENST00000359894	human	ensembl	74_37	-1	known	missense	c.709	p.E237Q	0.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR3	Uniprot_gn	ENSG00000129951	tier1	-	-	77	0	0.00	138	26	15.76	33	0	0.00	16	5	23.81
ABAT	0	genome.wustl.edu	37	16	8862051	8862051	+	Missense_Mutation	SNP	C	C	G			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	16	8862051	8862051	C	G	SNP	ABAT	ENST00000268251	human	ensembl	74_37	+1	known	missense	c.605	p.A202G	0.989	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	tier1	-	-	70	0	0.00	121	30	19.87	61	0	0.00	69	13	15.85
GPT	0	genome.wustl.edu	37	8	145730424	145730424	+	Silent	SNP	C	C	T			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	8	145730424	145730424	C	T	SNP	GPT	ENST00000394955	human	ensembl	74_37	+1	known	silent	c.405	p.D135	0.985	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GPT	HGNC	ENSG00000167701	tier1	-	-	63	0	0.00	81	19	19.00	46	0	0.00	42	8	16.00
LARP1	0	genome.wustl.edu	37	5	154191148	154191148	+	Missense_Mutation	SNP	A	A	T			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	5	154191148	154191148	A	T	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	missense	c.2798	p.K933I	1.000	NULL	pfam_Lupus_La_R-bd,smart_Lupus_La_R-bd,smart_DM15,pfscan_Lupus_La_R-bd	-	no_errors	LARP1	HGNC	ENSG00000155506	tier1	-	-	26	0	0.00	29	9	23.68	88	0	0.00	85	31	26.72
ZFR2	0	genome.wustl.edu	37	19	3834851	3834851	+	Missense_Mutation	SNP	G	G	T			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	19	3834851	3834851	G	T	SNP	ZFR2	ENST00000262961	human	ensembl	74_37	-1	known	missense	c.184	p.P62T	0.956	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278	tier1	-	-	89	0	0.00	169	22	11.52	25	0	0.00	18	6	25.00
KRTAP12-1	0	genome.wustl.edu	37	21	46101928	46101928	+	Silent	SNP	G	G	A			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	21	46101928	46101928	G	A	SNP	KRTAP12-1	ENST00000391617	human	ensembl	74_37	-1	known	silent	c.111	p.P37	0.014	NULL	NULL	-	no_errors	KRTAP12-1	HGNC	ENSG00000187175	tier1	-	-	115	0	0.00	118	33	21.85	11	0	0.00	10	3	23.08
OLFM2	0	genome.wustl.edu	37	19	9965243	9965243	+	Silent	SNP	G	G	A			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	19	9965243	9965243	G	A	SNP	OLFM2	ENST00000264833	human	ensembl	74_37	-1	known	silent	c.984	p.D328	1.000	pfam_Olfac-like,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM2	HGNC	ENSG00000105088	tier1	rs200166801	-	64	0	0.00	53	21	28.38	28	0	0.00	24	9	27.27
SOX10	0	genome.wustl.edu	37	22	38374051	38374052	+	In_Frame_Ins	INS	-	-	GTACTT			TCGA-RN-A68Q-01A-11D-A307-09	TCGA-RN-A68Q-10A-01D-A307-09	-	-	-	GTACTT	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c3787ae-7994-4448-a01f-347bcb22368c	61a568f9-beb4-45a9-92b9-30cf2001d4fe	22	38374051	38374052	-	GTACTT	INS	SOX10	ENST00000360880	human	ensembl	74_37	-1	known	in_frame_ins	c.520_519	p.173in_frame_insKY	1.000:1.000	superfamily_HMG_box_dom,smart_HMG_box_dom	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX10	HGNC	ENSG00000100146	tier1			14	0	0.00	10	10	50.00	14	0	0.00	10	10	50.00