Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ZNF676	0	genome.wustl.edu	37	19	22363460	22363460	+	Silent	SNP	A	A	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	19	22363460	22363460	A	G	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	silent	c.1059	p.T353	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	tier1	rs78757874	-	49	0	0.00	37	5	11.90	13	0	0.00	25	5	16.67
GREB1	0	genome.wustl.edu	37	2	11761063	11761063	+	Silent	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	2	11761063	11761063	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.4077	p.L1359	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208	tier1	-	-	39	0	0.00	18	8	30.77	102	0	0.00	34	32	48.48
ABCD1	0	genome.wustl.edu	37	X	152994946	152994946	+	Missense_Mutation	SNP	A	A	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	X	152994946	152994946	A	T	SNP	ABCD1	ENST00000370129	human	ensembl	74_37	+1	putative	missense	c.605	p.Q202L	0.000	NULL	pfam_ABC_Peroxi_TM	-	no_errors	ABCD1	HGNC	ENSG00000101986	tier1	-	-	25	0	0.00	20	9	31.03	17	0	0.00	10	2	16.67
AKR1C3	0	genome.wustl.edu	37	10	5147847	5147847	+	Missense_Mutation	SNP	C	C	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	10	5147847	5147847	C	G	SNP	AKR1C3	ENST00000380554	human	ensembl	74_37	+1	known	missense	c.907	p.L303V	0.035	superfamily_DP_OxRdtase_dom	pfam_DP_OxRdtase_dom,superfamily_DP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C3	HGNC	ENSG00000196139	tier1	-	-	59	0	0.00	42	23	35.38	70	0	0.00	84	39	31.71
SPATA20	0	genome.wustl.edu	37	17	48628217	48628217	+	Nonsense_Mutation	SNP	C	C	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	17	48628217	48628217	C	G	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	nonsense	c.1322	p.S441*	0.854	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282	tier1	-	-	43	0	0.00	23	25	52.08	37	0	0.00	19	8	29.63
KBTBD4	0	genome.wustl.edu	37	11	47594902	47594902	+	Silent	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	11	47594902	47594902	G	A	SNP	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	silent	c.1185	p.I395	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	tier1	-	-	40	0	0.00	9	21	70.00	142	0	0.00	16	48	75.00
TRIP10	0	genome.wustl.edu	37	19	6744604	6744604	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	19	6744604	6744604	G	T	SNP	TRIP10	ENST00000313244	human	ensembl	74_37	+1	known	missense	c.682	p.G228C	1.000	NULL	pfam_FCH_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	tier1	-	-	44	0	0.00	33	18	35.29	68	0	0.00	34	24	41.38
SDF2	0	genome.wustl.edu	37	17	26976212	26976212	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	17	26976212	26976212	C	T	SNP	SDF2	ENST00000247020	human	ensembl	74_37	-1	known	missense	c.431	p.R144K	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	SDF2	HGNC	ENSG00000132581	tier1	-	-	37	0	0.00	18	17	48.57	111	0	0.00	56	50	47.17
SORBS3	0	genome.wustl.edu	37	8	22424623	22424623	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	8	22424623	22424623	G	T	SNP	SORBS3	ENST00000240123	human	ensembl	74_37	+1	known	missense	c.1240	p.D414Y	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS3	HGNC	ENSG00000120896	tier1	-	-	25	0	0.00	13	20	60.61	50	0	0.00	28	33	54.10
SLC41A3	0	genome.wustl.edu	37	3	125731511	125731511	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	3	125731511	125731511	G	T	SNP	SLC41A3	ENST00000315891	human	ensembl	74_37	-1	known	missense	c.1052	p.P351H	0.994	pfam_SLC41_membr_dom	pfam_SLC41_membr_dom,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	SLC41A3	HGNC	ENSG00000114544	tier1	-	-	44	0	0.00	31	16	34.04	117	0	0.00	84	53	38.69
TXNDC16	0	genome.wustl.edu	37	14	52985905	52985905	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	14	52985905	52985905	C	T	SNP	TXNDC16	ENST00000281741	human	ensembl	74_37	-1	known	missense	c.499	p.A167T	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	tier1	-	-	28	0	0.00	14	18	56.25	68	0	0.00	71	35	33.02
ZNF718	0	genome.wustl.edu	37	4	155179	155179	+	R	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	4	155179	155179	G	A	SNP	ZNF718	ENST00000400172	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	tier1	-	-	20	0	0.00	20	10	33.33	51	0	0.00	24	28	53.85
HUWE1	0	genome.wustl.edu	37	X	53619440	53619440	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	X	53619440	53619440	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.3890	p.G1297E	1.000	superfamily_UBA-like	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1	-	-	61	0	0.00	29	27	48.21	99	0	0.00	60	51	45.95
EPB41L3	0	genome.wustl.edu	37	18	5419919	5419919	+	Nonsense_Mutation	SNP	C	C	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	18	5419919	5419919	C	A	SNP	EPB41L3	ENST00000544123	human	ensembl	74_37	-1	known	nonsense	c.1351	p.E451*	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L3	HGNC	ENSG00000082397	tier1	-	-	46	0	0.00	33	36	52.17	75	0	0.00	34	34	50.00
CNTP5	0	genome.wustl.edu	37	2	124783076	124783076	+	R	SNP	C	C	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	2	124783076	124783076	C	A	SNP	CNTP5	ENST00000423939	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.051	-	-	-	no_errors	CNTP5	HGNC	ENSG00000155052	tier1	-	-	11	0	0.00	5	4	44.44	35	0	0.00	13	9	40.91
SEMA6A	0	genome.wustl.edu	37	5	115838004	115838004	+	Silent	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	5	115838004	115838004	C	T	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	silent	c.120	p.V40	1.000	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421	tier1	-	-	11	0	0.00	9	15	62.50	100	0	0.00	50	42	45.65
SLC10A3	0	genome.wustl.edu	37	X	153717082	153717082	+	Silent	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	X	153717082	153717082	C	T	SNP	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	silent	c.198	p.L66	1.000	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903	tier1	-	-	80	0	0.00	52	41	44.09	103	0	0.00	42	26	38.24
LYN	0	genome.wustl.edu	37	8	56912075	56912075	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	8	56912075	56912075	G	A	SNP	LYN	ENST00000519728	human	ensembl	74_37	+1	known	missense	c.1303	p.E435K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	tier1	-	-	30	0	0.00	2	15	88.24	129	0	0.00	14	58	80.56
CDH12	0	genome.wustl.edu	37	5	21854831	21854831	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	5	21854831	21854831	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.595	p.V199I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	tier1	-	-	45	0	0.00	30	13	30.23	166	0	0.00	104	40	27.78
DH2	0	genome.wustl.edu	37	17	7623038	7623038	+	Splice_Site	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	17	7623038	7623038	G	A	SNP	DH2	ENST00000572933	human	ensembl	74_37	+1	known	splice_site	c.1-1	e1-1	0.885	-	-	-	no_errors	DH2	HGNC	ENSG00000183914	tier1	-	-	34	0	0.00	42	16	27.59	101	0	0.00	87	38	30.16
DPP6	0	genome.wustl.edu	37	7	154684144	154684144	+	Missense_Mutation	SNP	A	A	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	7	154684144	154684144	A	G	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.2552	p.D851G	0.999	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	tier1	-	-	38	0	0.00	18	20	52.63	109	0	0.00	49	46	48.42
DDB1	0	genome.wustl.edu	37	11	61089859	61089859	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	11	61089859	61089859	C	T	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	missense	c.1031	p.G344D	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	tier1	-	-	27	0	0.00	23	15	39.47	158	0	0.00	82	75	47.77
KY	0	genome.wustl.edu	37	3	134338098	134338098	+	Missense_Mutation	SNP	A	A	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	3	134338098	134338098	A	G	SNP	KY	ENST00000423778	human	ensembl	74_37	-1	known	missense	c.602	p.I201T	0.066	pfam_Transglutaminase-like	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611	tier1	rs199921236	-	52	0	0.00	31	12	27.91	88	0	0.00	49	57	53.77
MYO7B	0	genome.wustl.edu	37	2	128389232	128389232	+	Missense_Mutation	SNP	T	T	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	2	128389232	128389232	T	A	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.5078	p.L1693H	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	tier1	-	-	37	0	0.00	23	18	43.90	42	0	0.00	21	14	40.00
UBXN6	0	genome.wustl.edu	37	19	4445565	4445565	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	19	4445565	4445565	T	C	SNP	UBXN6	ENST00000301281	human	ensembl	74_37	-1	known	missense	c.1256	p.K419R	0.166	NULL	pfam_PUB_domain,pfam_UBX,smart_PUG-dom,smart_UBX,pfscan_UBX	-	no_errors	UBXN6	HGNC	ENSG00000167671	tier1	-	-	42	0	0.00	15	11	42.31	42	0	0.00	32	27	45.76
EHD1	0	genome.wustl.edu	37	11	64622875	64622875	+	Missense_Mutation	SNP	G	G	C			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	11	64622875	64622875	G	C	SNP	EHD1	ENST00000320631	human	ensembl	74_37	-1	known	missense	c.999	p.N333K	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	tier1	-	-	24	0	0.00	18	12	40.00	91	0	0.00	39	22	36.07
FAM50B	0	genome.wustl.edu	37	6	3850370	3850370	+	Missense_Mutation	SNP	C	C	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	6	3850370	3850370	C	G	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.325	p.Q109E	0.167	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945	tier1	-	-	24	0	0.00	12	11	45.83	5	0	0.00	10	4	28.57
EFCAB5	0	genome.wustl.edu	37	17	28405430	28405430	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	17	28405430	28405430	C	T	SNP	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	missense	c.2935	p.R979W	0.567	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927	tier1	-	-	33	0	0.00	25	16	39.02	119	0	0.00	54	35	38.89
LEMD2	0	genome.wustl.edu	37	6	33744825	33744842	+	Splice_Site	DEL	GGACCACGTCTGCAGGAG	GGACCACGTCTGCAGGAG	-			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	GGACCACGTCTGCAGGAG	GGACCACGTCTGCAGGAG	GGACCACGTCTGCAGGAG	-	GGACCACGTCTGCAGGAG	GGACCACGTCTGCAGGAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	6	33744825	33744842	GGACCACGTCTGCAGGAG	-	DEL	LEMD2	ENST00000293760	human	ensembl	74_37	-1	known	splice_site_del	c.1259-9_1259-1	e8-1	1.000:0.979:1.000:1.000:1.000:1.000:1.000:0.955:0.995:1.000:1.000:0.981:0.209:0.054:0.005:0.007:0.000:0.000	-	-	-	no_errors	LEMD2	HGNC	ENSG00000161904	tier1			71	0	0.00	54	12	18.18	71	0	0.00	54	12	18.18
NOLC1	0	genome.wustl.edu	37	10	103920666	103920668	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	TTC	TTC	TTC	-	TTC	TTC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	10	103920666	103920668	TTC	-	DEL	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	in_frame_del	c.1587_1589	p.S532in_frame_del	0.238:0.344:0.376	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197	tier1			20	0	0.00	11	3	21.43	98	0	0.00	24	16	40.00
BEND5	0	genome.wustl.edu	37	1	49208335	49208338	+	Frame_Shift_Del	DEL	GGAG	GGAG	-			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	GGAG	GGAG	GGAG	-	GGAG	GGAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	1	49208335	49208338	GGAG	-	DEL	BEND5	ENST00000371833	human	ensembl	74_37	-1	known	frame_shift_del	c.854_851	p.A284fs	1.000:1.000:1.000:1.000	NULL	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373	tier1			45	0	0.00	46	22	32.35	119	0	0.00	59	49	45.37
RB1	0	genome.wustl.edu	37	13	48923068	48923109	+	Splice_Site	DEL	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	-			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	-	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	13	48923068	48923109	TTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAA	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	splice_site_del	c.540-24_540-1	e6-1	0.748:0.656:0.094:0.076:0.000:0.005:0.215:0.266:0.281:0.276:0.319:0.335:0.547:0.689:0.953:0.968:0.985:0.987:0.993:0.993:0.992:0.996:1.000:1.000:0.997:0.988:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			55	0	0.00	20	3	13.04	55	0	0.00	20	3	13.04
CCDC154	0	genome.wustl.edu	37	16	1487892	1487892	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	16	1487892	1487892	G	T	SNP	CCDC154	ENST00000389176	human	ensembl	74_37	-1	known	missense	c.1243	p.L415M	0.990	NULL	NULL	-	no_errors	CCDC154	HGNC	ENSG00000197599	tier1	-	-	14	0	0.00	12	8	40.00	15	0	0.00	9	3	25.00
CPNE8	0	genome.wustl.edu	37	12	39047419	39047419	+	R	SNP	T	T	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	12	39047419	39047419	T	A	SNP	CPNE8	ENST00000546603	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	CPNE8	HGNC	ENSG00000139117	tier1	-	-	20	0	0.00	12	4	25.00	9	0	0.00	6	2	25.00
ENSG00000269690	0	genome.wustl.edu	37	1	201592613	201592613	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	1	201592613	201592613	T	C	SNP	ENSG00000269690	ENST00000593583	human	ensembl	74_37	+1	known	missense	c.601	p.S201P	0.167	NULL	NULL	-	no_errors	AC096677.1	Clone_based_ensembl_gene	ENSG00000269690	tier1	-	-	46	0	0.00	6	16	72.73	31	0	0.00	2	20	90.91
EPS15L1	0	genome.wustl.edu	37	19	16536019	16536019	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	19	16536019	16536019	C	T	SNP	EPS15L1	ENST00000455140	human	ensembl	74_37	-1	known	missense	c.667	p.V223I	1.000	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	tier1	-	-	24	0	0.00	13	18	58.06	14	0	0.00	7	7	46.67
ZNF799	0	genome.wustl.edu	37	19	12502914	12502914	+	Missense_Mutation	SNP	C	C	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	19	12502914	12502914	C	G	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	missense	c.298	p.V100L	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	tier1	-	-	63	0	0.00	42	5	10.64	53	0	0.00	43	4	8.51
ZNF799	0	genome.wustl.edu	37	19	12502913	12502913	+	Missense_Mutation	SNP	A	A	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	19	12502913	12502913	A	T	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	missense	c.299	p.V100E	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	tier1	-	-	64	0	0.00	42	6	12.50	53	0	0.00	44	4	8.33
F8	0	genome.wustl.edu	37	X	154158400	154158400	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	X	154158400	154158400	G	A	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.3665	p.T1222I	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	tier1	-	-	55	0	0.00	63	8	11.27	42	0	0.00	67	4	5.63
MYH9	0	genome.wustl.edu	37	22	36696962	36696962	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	22	36696962	36696962	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.2773	p.E925K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tR-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345	tier1	-	-	33	0	0.00	56	21	27.27	28	1	3.45	29	17	36.96
ENSG00000161103	0	genome.wustl.edu	37	22	18846342	18846342	+	R	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	22	18846342	18846342	G	A	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103	tier1	-	-	30	0	0.00	6	3	33.33	23	0	0.00	3	1	25.00
NEAT1	0	genome.wustl.edu	37	11	65211735	65211758	+	R	DEL	TGTGTGTGTGTGTGTGTGTGTGTG	TGTGTGTGTGTGTGTGTGTGTGTG	-			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	TGTGTGTGTGTGTGTGTGTGTGTG	TGTGTGTGTGTGTGTGTGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	11	65211735	65211758	TGTGTGTGTGTGTGTGTGTGTGTG	-	DEL	NEAT1	ENST00000501122	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.008:0.012:0.015:0.018:0.020:0.023:0.024:0.026:0.027:0.027:0.028:0.028:0.027:0.027:0.026:0.024:0.023:0.020:0.018:0.015:0.012:0.008:0.008	-	-	-	no_errors	NEAT1	HGNC	ENSG00000245532	tier1			10	0	0.00	7	1	12.50	10	0	0.00	7	1	12.50
ZNF408	0	genome.wustl.edu	37	11	46726962	46726962	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	11	46726962	46726962	G	A	SNP	ZNF408	ENST00000311764	human	ensembl	74_37	+1	known	missense	c.1712	p.R571H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213	tier1	-	-	33	0	0.00	3	14	82.35	5	0	0.00	1	1	50.00
CLEC4M	0	genome.wustl.edu	37	19	7830875	7830875	+	Missense_Mutation	SNP	A	A	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	19	7830875	7830875	A	G	SNP	CLEC4M	ENST00000327325	human	ensembl	74_37	+1	known	missense	c.566	p.K189R	0.689	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4M	HGNC	ENSG00000104938	tier1	-	-	97	0	0.00	62	30	32.61	0	0	0.00	0	0	0.00
CTAGE4	0	genome.wustl.edu	37	7	143882559	143882559	+	Missense_Mutation	SNP	A	A	G			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	7	143882559	143882559	A	G	SNP	CTAGE4	ENST00000486333	human	ensembl	74_37	+1	known	missense	c.1963	p.R655G	0.062	NULL	superfamily_tR-bd_arm	-	no_errors	CTAGE4	HGNC	ENSG00000225932	tier1	rs199840651	-	13	0	0.00	8	4	33.33	0	0	0.00	0	0	0.00
ENSG00000221544	0	genome.wustl.edu	37	6	105629045	105629082	+	R	DEL	TGTGTGTGTGTGTGTGTATATATATGTATATATATATA	TGTGTGTGTGTGTGTGTATATATATGTATATATATATA	-			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	TGTGTGTGTGTGTGTGTATATATATGTATATATATATA	TGTGTGTGTGTGTGTGTATATATATGTATATATATATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	6	105629045	105629082	TGTGTGTGTGTGTGTGTATATATATGTATATATATATA	-	DEL	ENSG00000221544	ENST00000408617	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.000:0.001:0.001:0.001:0.001:0.001:0.001:0.001:0.001:0.001:0.001:0.001:0.001:0.002:0.002:0.004:0.005:0.007:0.007:0.007:0.007:0.007:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AL359709.1	Clone_based_ensembl_gene	ENSG00000221544	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
LINC00200	0	genome.wustl.edu	37	10	1205784	1205784	+	R	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	10	1205784	1205784	G	A	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	rs12762051	-	36	0	0.00	19	5	20.83	1	0	0.00	0	0	0.00
LINC00200	0	genome.wustl.edu	37	10	1205788	1205788	+	R	SNP	C	C	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	10	1205788	1205788	C	A	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	-	-	39	0	0.00	19	4	17.39	1	0	0.00	0	0	0.00
RGPD3	0	genome.wustl.edu	37	2	107039543	107039543	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DO-01A-11D-A26G-09	TCGA-PC-A5DO-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e26e7a28-a459-4727-bd2e-4e7c9f211e38	4a7eeeb5-9b16-4e5e-8ef9-0ffb034ecfb7	2	107039543	107039543	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.4880	p.T1627M	0.497	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	tier1	-	-	70	0	0.00	34	25	42.37	0	0	0.00	0	0	0.00