Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
CCDC28A	0	genome.wustl.edu	37	6	139101104	139101104	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	6	139101104	139101104	G	A	SNP	CCDC28A	ENST00000332797	human	ensembl	74_37	+1	known	missense	c.574	p.G192R	1.000	NULL	NULL	-	no_errors	CCDC28A	HGNC	ENSG00000024862	tier1	-	-	80	0	0.00	60	46	43.40	97	0	0.00	65	47	41.96
MYO9A	0	genome.wustl.edu	37	15	72141307	72141307	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	15	72141307	72141307	C	T	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.6929	p.C2310Y	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	tier1	-	-	84	0	0.00	88	9	9.28	93	0	0.00	86	12	12.24
VIPR1	0	genome.wustl.edu	37	3	42573777	42573777	+	Missense_Mutation	SNP	A	A	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	3	42573777	42573777	A	T	SNP	VIPR1	ENST00000325123	human	ensembl	74_37	+1	known	missense	c.962	p.Q321L	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR1	HGNC	ENSG00000114812	tier1	-	-	31	0	0.00	27	16	37.21	93	0	0.00	46	37	44.58
MME	0	genome.wustl.edu	37	3	154859841	154859841	+	Missense_Mutation	SNP	A	A	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	3	154859841	154859841	A	T	SNP	MME	ENST00000360490	human	ensembl	74_37	+1	known	missense	c.1019	p.N340I	0.985	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549	tier1	-	-	67	0	0.00	44	37	45.68	101	0	0.00	50	50	50.00
P2RY2	0	genome.wustl.edu	37	11	72946213	72946213	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	11	72946213	72946213	G	A	SNP	P2RY2	ENST00000311131	human	ensembl	74_37	+1	known	missense	c.1009	p.G337S	0.965	prints_P2Y2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y2_rcpt,prints_GPCR_Rhodpsn,prints_P2Y4_rcpt	-	no_errors	P2RY2	HGNC	ENSG00000175591	tier1	-	-	45	0	0.00	38	27	40.91	21	0	0.00	10	2	16.67
STT3A	0	genome.wustl.edu	37	11	125476332	125476332	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	11	125476332	125476332	C	T	SNP	STT3A	ENST00000392708	human	ensembl	74_37	+1	known	missense	c.752	p.S251F	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3A	HGNC	ENSG00000134910	tier1	-	-	144	0	0.00	93	66	41.25	89	1	1.11	58	46	44.23
DPEP1	0	genome.wustl.edu	37	16	89702773	89702773	+	Silent	SNP	G	G	A			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	16	89702773	89702773	G	A	SNP	DPEP1	ENST00000261615	human	ensembl	74_37	+1	known	silent	c.339	p.P113	0.001	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP1	HGNC	ENSG00000015413	tier1	-	-	67	0	0.00	37	33	47.14	36	0	0.00	32	15	31.91
PZP	0	genome.wustl.edu	37	12	9311088	9311088	+	Silent	SNP	C	C	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	12	9311088	9311088	C	T	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	silent	c.3222	p.T1074	0.026	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	tier1	-	-	97	0	0.00	69	54	43.90	59	0	0.00	26	30	53.57
TP53	0	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	60	0	0.00	11	21	65.62	114	0	0.00	20	40	66.67
VN1R2	0	genome.wustl.edu	37	19	53762741	53762741	+	Missense_Mutation	SNP	C	C	G			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	19	53762741	53762741	C	G	SNP	VN1R2	ENST00000341702	human	ensembl	74_37	+1	known	missense	c.1113	p.D371E	0.005	prints_Vmron_rcpt_1	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131	tier1	-	-	77	0	0.00	42	36	46.15	57	0	0.00	34	23	40.35
ZMYND12	0	genome.wustl.edu	37	1	42914153	42914153	+	Missense_Mutation	SNP	C	C	A			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	1	42914153	42914153	C	A	SNP	ZMYND12	ENST00000372565	human	ensembl	74_37	-1	known	missense	c.409	p.A137S	0.338	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND12	HGNC	ENSG00000066185	tier1	-	-	45	0	0.00	24	35	59.32	94	0	0.00	65	38	36.89
ARHGEF25	0	genome.wustl.edu	37	12	58007532	58007532	+	Missense_Mutation	SNP	C	C	A			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	12	58007532	58007532	C	A	SNP	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	missense	c.658	p.Q220K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771	tier1	rs147980194	-	60	0	0.00	49	15	23.44	127	0	0.00	87	13	13.00
ZYG11A	0	genome.wustl.edu	37	1	53322695	53322695	+	Silent	SNP	C	C	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	1	53322695	53322695	C	T	SNP	ZYG11A	ENST00000371528	human	ensembl	74_37	+1	known	silent	c.282	p.S94	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	ZYG11A	HGNC	ENSG00000203995	tier1	-	-	37	0	0.00	36	8	18.18	110	0	0.00	94	12	11.32
ANXA6	0	genome.wustl.edu	37	5	150488015	150488015	+	Splice_Site	SNP	C	C	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	5	150488015	150488015	C	T	SNP	ANXA6	ENST00000354546	human	ensembl	74_37	-1	known	splice_site	c.1780+1	e22+1	1.000	-	-	-	no_errors	ANXA6	HGNC	ENSG00000197043	tier1	-	-	49	0	0.00	24	5	17.24	118	0	0.00	95	23	19.49
SMTN	0	genome.wustl.edu	37	22	31500342	31500344	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	ATG	ATG	ATG	-	ATG	ATG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	22	31500342	31500344	ATG	-	DEL	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	in_frame_del	c.2644_2646	p.M883in_frame_del	1.000:1.000:1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	tier1			79	0	0.00	51	33	39.29	100	0	0.00	36	24	40.00
MED14	0	genome.wustl.edu	37	X	40588606	40588606	+	R	DEL	A	A	-			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	X	40588606	40588606	A	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182	tier1			31	0	0.00	31	4	11.43	16	0	0.00	43	6	12.24
ENSG00000269243	0	genome.wustl.edu	37	19	16244264	16244264	+	R	DEL	T	T	-			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	19	16244264	16244264	T	-	DEL	ENSG00000269243	ENST00000599676	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2231E14.8	Clone_based_vega_gene	ENSG00000269243	tier1			24	0	0.00	22	4	15.38	9	0	0.00	13	3	18.75
CENPE	0	genome.wustl.edu	37	4	104080391	104080391	+	Missense_Mutation	SNP	C	C	G			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	4	104080391	104080391	C	G	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.2377	p.G793R	0.181	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	tier1	-	-	62	0	0.00	44	9	16.98	98	0	0.00	102	10	8.93
BPIFA2	0	genome.wustl.edu	37	20	31763325	31763325	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	20	31763325	31763325	G	T	SNP	BPIFA2	ENST00000253362	human	ensembl	74_37	+1	known	missense	c.523	p.A175S	0.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA2	HGNC	ENSG00000131050	tier1	-	-	66	0	0.00	60	13	17.81	84	0	0.00	68	4	5.48
ROCK2	0	genome.wustl.edu	37	2	11364484	11364484	+	Missense_Mutation	SNP	T	T	A			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	2	11364484	11364484	T	A	SNP	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	missense	c.971	p.H324L	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tR-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	tier1	-	-	72	0	0.00	78	11	12.36	105	0	0.00	73	7	8.75
HCG25	0	genome.wustl.edu	37	6	33219511	33219511	+	R	SNP	C	C	T			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	6	33219511	33219511	C	T	SNP	HCG25	ENST00000422366	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HCG25	HGNC	ENSG00000232940	tier1	-	-	41	0	0.00	46	10	17.86	98	0	0.00	95	10	9.52
PRAMEF2	0	genome.wustl.edu	37	1	12921627	12921627	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	1	12921627	12921627	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	74_37	+1	known	missense	c.1418	p.C473Y	0.005	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	tier1	-	-	229	0	0.00	114	20	14.93	16	0	0.00	7	1	12.50
ENSG00000205746	0	genome.wustl.edu	37	16	18438095	18438095	+	R	DEL	C	C	-			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	16	18438095	18438095	C	-	DEL	ENSG00000205746	ENST00000535716	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-1212A22.1	Clone_based_vega_gene	ENSG00000205746	tier1			10	0	0.00	6	3	33.33	0	0	0.00	0	0	0.00
ENSG00000216113	0	genome.wustl.edu	37	8	104863873	104863880	+	R	DEL	ACACACAC	ACACACAC	-			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	ACACACAC	ACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	8	104863873	104863880	ACACACAC	-	DEL	ENSG00000216113	ENST00000401294	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AP001572.1	Clone_based_ensembl_gene	ENSG00000216113	tier1			1	0	0.00	4	1	20.00	1	0	0.00	4	1	20.00
LOC101929847	0	genome.wustl.edu	37	15	84868712	84868724	+	R	DEL	GGGGGGGGGGGGA	GGGGGGGGGGGGA	-			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	GGGGGGGGGGGGA	GGGGGGGGGGGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	15	84868712	84868724	GGGGGGGGGGGGA	-	DEL	LOC101929847	ENST00000316967	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.357:0.337:0.362:0.362:0.370:0.357:0.300:0.305:0.291:0.276:0.262:0.247:0.207	-	-	-	no_errors	AC103965.1	Clone_based_vega_gene	ENSG00000225151	tier1			1	0	0.00	2	0	0.00	1	0	0.00	2	0	0.00
MT-CO1	0	genome.wustl.edu	37	MT	7210	7210	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DK-01A-11D-A27P-09	TCGA-PC-A5DK-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3eccd705-c0c1-4563-8e5a-98b027d17255	eb5f3321-1759-43c2-a78c-8f270f392c89	MT	7210	7210	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.1307	p.M436T	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	17	0	0.00	12	5	29.41	0	0	0.00	0	0	0.00