Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
GCH1	0	genome.wustl.edu	37	14	55309792	55309792	+	R	SNP	T	T	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	14	55309792	55309792	T	A	SNP	GCH1	ENST00000254299	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCH1	HGNC	ENSG00000131979	tier1	-	-	30	0	0.00	29	10	25.64	73	0	0.00	55	26	32.10
RIOK1	0	genome.wustl.edu	37	6	7403055	7403055	+	Missense_Mutation	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	6	7403055	7403055	G	A	SNP	RIOK1	ENST00000379834	human	ensembl	74_37	+1	known	missense	c.692	p.R231H	1.000	pfam_RIO-like_kinase,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	pfam_RIO-like_kinase,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	-	no_errors	RIOK1	HGNC	ENSG00000124784	tier1	-	-	65	0	0.00	25	21	45.65	88	0	0.00	33	39	54.17
DST	0	genome.wustl.edu	37	6	56504764	56504764	+	Missense_Mutation	SNP	T	T	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	6	56504764	56504764	T	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.2483	p.E828V	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	21	0	0.00	15	14	48.28	72	0	0.00	63	38	37.62
HSPA2	0	genome.wustl.edu	37	14	65008936	65008936	+	Missense_Mutation	SNP	A	A	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	14	65008936	65008936	A	T	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	missense	c.1369	p.N457Y	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803	tier1	-	-	21	0	0.00	29	18	38.30	88	0	0.00	94	58	37.91
TNFSF12	0	genome.wustl.edu	37	17	7460466	7460466	+	Silent	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	17	7460466	7460466	G	A	SNP	TNFSF12	ENST00000293825	human	ensembl	74_37	+1	known	silent	c.549	p.V183	0.961	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	-	no_errors	TNFSF12	HGNC	ENSG00000239697	tier1	-	-	57	0	0.00	39	22	36.07	37	0	0.00	56	30	34.88
SCNN1A	0	genome.wustl.edu	37	12	6464555	6464555	+	Silent	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	12	6464555	6464555	C	T	SNP	SCNN1A	ENST00000358945	human	ensembl	74_37	-1	known	silent	c.1026	p.L342	0.998	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1A	HGNC	ENSG00000111319	tier1	-	-	14	0	0.00	3	9	75.00	61	0	0.00	18	35	66.04
CDC73	0	genome.wustl.edu	37	1	193181546	193181546	+	Missense_Mutation	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	193181546	193181546	C	T	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	missense	c.1093	p.P365S	1.000	pfam_R_pol_access_fac_Cdc73	pfam_R_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	tier1	-	-	93	0	0.00	64	27	29.67	104	0	0.00	64	46	41.82
TWIST1	0	genome.wustl.edu	37	7	19156406	19156406	+	Missense_Mutation	SNP	T	T	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	7	19156406	19156406	T	C	SNP	TWIST1	ENST00000242261	human	ensembl	74_37	-1	known	missense	c.539	p.H180R	1.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TWIST1	HGNC	ENSG00000122691	tier1	-	-	32	0	0.00	10	28	71.79	34	0	0.00	14	16	53.33
C6orf183	0	genome.wustl.edu	37	6	109578931	109578931	+	R	SNP	C	C	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	6	109578931	109578931	C	A	SNP	C6orf183	ENST00000453496	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	C6orf183	HGNC	ENSG00000243587	tier1	-	-	25	0	0.00	16	13	44.83	22	0	0.00	18	16	47.06
NSUN4	0	genome.wustl.edu	37	1	46808674	46808674	+	R	SNP	A	A	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	46808674	46808674	A	C	SNP	NSUN4	ENST00000498008	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.248	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	tier1	-	-	58	0	0.00	40	9	18.37	107	0	0.00	140	23	14.02
AMFR	0	genome.wustl.edu	37	16	56439139	56439139	+	Silent	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	16	56439139	56439139	C	T	SNP	AMFR	ENST00000290649	human	ensembl	74_37	-1	known	silent	c.684	p.V228	1.000	NULL	pfam_CUE,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_CUE,pfscan_CUE,pfscan_Znf_RING	-	no_errors	AMFR	HGNC	ENSG00000159461	tier1	-	-	40	0	0.00	46	10	17.86	98	0	0.00	168	36	17.48
ENSG00000205018	0	genome.wustl.edu	37	16	89017335	89017335	+	Missense_Mutation	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	16	89017335	89017335	G	A	SNP	ENSG00000205018	ENST00000378347	human	ensembl	74_37	+1	putative	missense	c.809	p.R270Q	0.501	NULL	NULL	-	no_errors	RP11-830F9.6	Clone_based_vega_gene	ENSG00000205018	tier1	-	-	136	0	0.00	39	68	63.55	14	0	0.00	11	15	57.69
FAP	0	genome.wustl.edu	37	2	163070519	163070519	+	Missense_Mutation	SNP	T	T	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	2	163070519	163070519	T	C	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	missense	c.931	p.R311G	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	tier1	-	-	26	0	0.00	19	14	42.42	89	0	0.00	97	63	39.38
CDC73	0	genome.wustl.edu	37	1	193181594	193181594	+	Silent	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	193181594	193181594	C	T	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	silent	c.1141	p.L381	1.000	pfam_R_pol_access_fac_Cdc73	pfam_R_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	tier1	-	-	74	0	0.00	55	16	22.54	102	1	0.97	61	44	41.90
SDK2	0	genome.wustl.edu	37	17	71434184	71434184	+	Missense_Mutation	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	17	71434184	71434184	C	T	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.835	p.A279T	0.879	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	62	0	0.00	48	31	39.24	7	0	0.00	16	14	46.67
LIMD1-AS1	0	genome.wustl.edu	37	3	45730556	45730556	+	R	SNP	A	A	G			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	3	45730556	45730556	A	G	SNP	LIMD1-AS1	ENST00000429798	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LIMD1-AS1	HGNC	ENSG00000230530	tier1	-	-	31	0	0.00	10	12	52.17	62	0	0.00	55	40	42.11
GCH1	0	genome.wustl.edu	37	14	55309793	55309793	+	R	SNP	C	C	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	14	55309793	55309793	C	A	SNP	GCH1	ENST00000254299	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCH1	HGNC	ENSG00000131979	tier1	-	-	30	0	0.00	29	10	25.64	72	0	0.00	54	26	32.50
TM6SF1	0	genome.wustl.edu	37	15	83781571	83781571	+	Missense_Mutation	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	15	83781571	83781571	G	A	SNP	TM6SF1	ENST00000379386	human	ensembl	74_37	+1	known	missense	c.115	p.A39T	0.997	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF1	HGNC	ENSG00000136404	tier1	-	-	78	0	0.00	93	54	36.73	105	0	0.00	111	62	35.63
OR10G4	0	genome.wustl.edu	37	11	123886552	123886552	+	Missense_Mutation	SNP	A	A	G			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	11	123886552	123886552	A	G	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	missense	c.271	p.I91V	0.421	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	tier1	-	-	26	0	0.00	33	12	26.67	18	0	0.00	28	12	30.00
KIAA0556	0	genome.wustl.edu	37	16	27761600	27761600	+	Missense_Mutation	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	16	27761600	27761600	G	A	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.3319	p.A1107T	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	tier1	-	-	20	0	0.00	5	8	61.54	116	0	0.00	63	34	35.05
OFD1	0	genome.wustl.edu	37	X	13771531	13771531	+	Missense_Mutation	SNP	G	G	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	X	13771531	13771531	G	C	SNP	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	missense	c.1100	p.R367P	0.000	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	tier1	-	-	74	0	0.00	121	42	25.77	35	0	0.00	34	25	42.37
DOPEY2	0	genome.wustl.edu	37	21	37617590	37617590	+	Silent	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	21	37617590	37617590	G	A	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	silent	c.3312	p.P1104	0.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	tier1	-	-	12	0	0.00	17	7	29.17	21	0	0.00	13	13	50.00
TP53	0	genome.wustl.edu	37	17	7577545	7577545	+	Missense_Mutation	SNP	T	T	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	17	7577545	7577545	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.736	p.M246V	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	48	0	0.00	10	20	66.67	69	0	0.00	19	47	71.21
UGT1A3	0	genome.wustl.edu	37	2	234638180	234638180	+	Silent	SNP	C	C	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	2	234638180	234638180	C	A	SNP	UGT1A3	ENST00000482026	human	ensembl	74_37	+1	known	silent	c.408	p.A136	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135	tier1	-	-	80	0	0.00	54	28	34.15	18	0	0.00	16	15	48.39
ARHGEF4	0	genome.wustl.edu	37	2	131673046	131673046	+	Silent	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	2	131673046	131673046	G	A	SNP	ARHGEF4	ENST00000409359	human	ensembl	74_37	+1	putative	silent	c.537	p.K179	0.000	NULL	NULL	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	tier1	-	-	29	0	0.00	24	6	20.00	76	0	0.00	95	43	31.16
CWC22	0	genome.wustl.edu	37	2	180810224	180810224	+	Missense_Mutation	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	2	180810224	180810224	C	T	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	missense	c.2359	p.D787N	0.941	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	tier1	-	-	88	0	0.00	57	34	37.36	84	0	0.00	63	35	35.71
GRIA1	0	genome.wustl.edu	37	5	153190650	153190650	+	Missense_Mutation	SNP	C	C	G			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	5	153190650	153190650	C	G	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.2616	p.N872K	0.995	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	tier1	-	-	54	0	0.00	58	25	30.12	70	0	0.00	50	51	50.50
ENSG00000258661	0	genome.wustl.edu	37	14	37116998	37116998	+	R	SNP	G	G	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	14	37116998	37116998	G	C	SNP	ENSG00000258661	ENST00000555107	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-964E11.2	Clone_based_vega_gene	ENSG00000258661	tier1	-	-	41	0	0.00	20	20	50.00	28	0	0.00	48	13	21.31
PADI1	0	genome.wustl.edu	37	1	17570753	17570753	+	R	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	17570753	17570753	G	A	SNP	PADI1	ENST00000460293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PADI1	HGNC	ENSG00000142623	tier1	-	-	34	0	0.00	38	4	9.52	74	0	0.00	61	20	24.69
WDR3	0	genome.wustl.edu	37	1	118496638	118496638	+	Silent	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	118496638	118496638	G	A	SNP	WDR3	ENST00000349139	human	ensembl	74_37	+1	known	silent	c.2277	p.R759	1.000	NULL	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183	tier1	-	-	15	0	0.00	9	8	47.06	101	0	0.00	88	64	42.11
GINS3	0	genome.wustl.edu	37	16	58426423	58426423	+	R	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	16	58426423	58426423	C	T	SNP	GINS3	ENST00000564814	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GINS3	HGNC	ENSG00000181938	tier1	-	-	26	0	0.00	10	7	41.18	98	0	0.00	85	17	16.50
NYAP1	0	genome.wustl.edu	37	7	100084455	100084455	+	Missense_Mutation	SNP	A	A	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	7	100084455	100084455	A	C	SNP	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	missense	c.80	p.E27A	1.000	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924	tier1	-	-	40	0	0.00	20	9	31.03	18	0	0.00	20	10	33.33
UNC5C	0	genome.wustl.edu	37	4	96140390	96140390	+	Missense_Mutation	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	4	96140390	96140390	C	T	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	missense	c.1375	p.V459I	1.000	NULL	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168	tier1	-	-	13	0	0.00	7	8	53.33	106	0	0.00	82	61	42.66
LAMP3	0	genome.wustl.edu	37	3	182871758	182871758	+	Silent	SNP	C	C	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	3	182871758	182871758	C	A	SNP	LAMP3	ENST00000265598	human	ensembl	74_37	-1	known	silent	c.471	p.G157	0.002	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081	tier1	-	-	129	0	0.00	92	59	39.07	149	0	0.00	112	91	44.83
RLF	0	genome.wustl.edu	37	1	40661333	40661333	+	Silent	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	40661333	40661333	G	A	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	silent	c.504	p.G168	0.945	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	tier1	-	-	20	0	0.00	14	9	39.13	120	1	0.81	84	59	41.26
DH17-AS1	0	genome.wustl.edu	37	17	76495054	76495054	+	R	SNP	C	C	G			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	17	76495054	76495054	C	G	SNP	DH17-AS1	ENST00000591373	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-559N14.5	Clone_based_vega_gene	ENSG00000267432	tier1	-	-	29	0	0.00	20	15	42.86	55	0	0.00	47	29	38.16
ARID1A	0	genome.wustl.edu	37	1	27088786	27088786	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	27088786	27088786	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.2395	p.Q799*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_D-bd,superfamily_ARID/BRIGHT_D-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_D-bd,pfscan_ARID/BRIGHT_D-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	tier1	-	-	30	0	0.00	29	10	25.64	78	0	0.00	67	60	47.24
CDC73	0	genome.wustl.edu	37	1	193181539	193181539	+	Silent	SNP	C	C	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	193181539	193181539	C	A	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	silent	c.1086	p.I362	1.000	pfam_R_pol_access_fac_Cdc73	pfam_R_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	tier1	-	-	95	0	0.00	64	27	29.67	101	1	0.98	65	48	42.48
GPATCH1	0	genome.wustl.edu	37	19	33602767	33602767	+	Missense_Mutation	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	19	33602767	33602767	G	A	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	missense	c.1723	p.E575K	1.000	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	tier1	-	-	42	0	0.00	20	10	33.33	77	0	0.00	61	64	51.20
SEMA4D	0	genome.wustl.edu	37	9	91978732	91978732	+	Missense_Mutation	SNP	G	G	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	9	91978732	91978732	G	C	SNP	SEMA4D	ENST00000343780	human	ensembl	74_37	-1	known	missense	c.2016	p.S672R	0.001	pfscan_Ig-like_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764	tier1	-	-	43	0	0.00	18	19	51.35	35	0	0.00	28	21	42.86
DH2	0	genome.wustl.edu	37	17	7678177	7678177	+	Missense_Mutation	SNP	C	C	G			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	17	7678177	7678177	C	G	SNP	DH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.4602	p.F1534L	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH2	HGNC	ENSG00000183914	tier1	-	-	35	0	0.00	23	8	25.81	64	0	0.00	70	34	32.69
CNKSR1	0	genome.wustl.edu	37	1	26511667	26511667	+	Missense_Mutation	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	1	26511667	26511667	G	A	SNP	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	missense	c.1319	p.R440H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675	tier1	-	-	24	0	0.00	24	7	22.58	97	0	0.00	87	48	35.29
ERBB4	0	genome.wustl.edu	37	2	212248560	212248560	+	Missense_Mutation	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	2	212248560	212248560	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.3707	p.A1236V	0.996	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	tier1	-	-	70	0	0.00	77	29	27.36	85	0	0.00	75	69	47.92
TCIRG1	0	genome.wustl.edu	37	11	67808747	67808748	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	11	67808747	67808748	CA	-	DEL	TCIRG1	ENST00000265686	human	ensembl	74_37	+1	known	frame_shift_del	c.9_10	p.M4fs	1.000:1.000	NULL	pfam_V-ATPase_116kDa_su	-	no_errors	TCIRG1	HGNC	ENSG00000110719	tier1			34	0	0.00	38	10	20.83	33	0	0.00	24	14	36.84
TLN1	0	genome.wustl.edu	37	9	35711350	35711351	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	9	35711350	35711351	-	C	INS	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	frame_shift_ins	c.3921_3920	p.I1308fs	0.999:1.000	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076	tier1			35	0	0.00	24	16	40.00	107	0	0.00	89	53	37.32
ANO7	0	genome.wustl.edu	37	2	242128165	242128165	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	2	242128165	242128165	G	-	DEL	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	frame_shift_del	c.139	p.G47fs	0.078	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205	tier1			22	0	0.00	16	17	51.52	17	0	0.00	15	10	40.00
PDZD2	0	genome.wustl.edu	37	5	32108775	32108778	+	R	DEL	ACTT	ACTT	-			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	ACTT	ACTT	ACTT	-	ACTT	ACTT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	5	32108775	32108778	ACTT	-	DEL	PDZD2	ENST00000397559	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.005:0.008:0.010	-	-	-	no_errors	PDZD2	HGNC	ENSG00000133401	tier1			53	0	0.00	31	8	20.51	93	0	0.00	81	37	31.36
SSPO	0	genome.wustl.edu	37	7	149500107	149500107	+	R	SNP	G	G	A			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	7	149500107	149500107	G	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1	-	-	19	0	0.00	7	7	50.00	13	0	0.00	7	3	30.00
ENSG00000215941	0	genome.wustl.edu	37	3	38948822	38948843	+	R	DEL	TGTGTGTGTGTGTATATATCTA	TGTGTGTGTGTGTATATATCTA	-			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	TGTGTGTGTGTGTATATATCTA	TGTGTGTGTGTGTATATATCTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	3	38948822	38948843	TGTGTGTGTGTGTATATATCTA	-	DEL	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.193:0.195:0.137:0.126:0.125:0.119:0.107:0.069:0.062:0.049:0.028:0.020:0.007:0.002:0.001:0.001:0.002:0.002:0.002:0.001:0.001:0.001	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000264222	0	genome.wustl.edu	37	18	14252079	14252080	+	R	INS	-	-	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	18	14252079	14252080	-	C	INS	ENSG00000264222	ENST00000580200	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.205:0.200	-	-	-	no_errors	RP11-757O6.1	Clone_based_vega_gene	ENSG00000264222	tier1			31	0	0.00	8	3	27.27	0	0	0.00	0	0	0.00
LRRC37A	0	genome.wustl.edu	37	17	44409004	44409004	+	Missense_Mutation	SNP	T	T	C			TCGA-HS-A5N7-01A-21D-A26G-09	TCGA-HS-A5N7-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ed66c47-3927-4b0d-8bd9-3fcef06f7538	1770637f-2776-4d75-8831-d45979297d85	17	44409004	44409004	T	C	SNP	LRRC37A	ENST00000320254	human	ensembl	74_37	+1	known	missense	c.4361	p.L1454P	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A	HGNC	ENSG00000176681	tier1	rs200790029	-	10	0	0.00	18	9	33.33	0	0	0.00	0	0	0.00