Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID NFE2L3 9603 hgsc.bcm.edu 36 7 26191147 26191147 + Missense_Mutation SNP C C G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 HECW1 23072 hgsc.bcm.edu 36 7 43558455 43558455 + Missense_Mutation SNP G G C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 AKAP9 10142 hgsc.bcm.edu 36 7 91549888 91549888 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SMO 54498 hgsc.bcm.edu 36 7 128633390 128633390 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 MLL3 58508 hgsc.bcm.edu 36 7 151510057 151510057 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SNX5 27131 hgsc.bcm.edu 36 20 17877566 17877566 + Nonsense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 EMILIN3 90187 hgsc.bcm.edu 36 20 39424558 39424558 + Silent SNP A A G rs41307177 unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 EMILIN3 90187 hgsc.bcm.edu 36 20 39424585 39424585 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SALL4 57167 hgsc.bcm.edu 36 20 49840392 49840392 + Silent SNP G G A rs13043248 byCluster;byFrequency;byHapMap TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CLTCL1 8218 hgsc.bcm.edu 36 22 17588966 17588966 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 NF2 4771 hgsc.bcm.edu 36 22 28365156 28365156 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CYTH4 27128 hgsc.bcm.edu 36 22 36020695 36020695 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 C14orf37 145407 hgsc.bcm.edu 36 14 57674495 57674495 + Silent SNP A A C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 C14orf39 317761 hgsc.bcm.edu 36 14 59973407 59973407 + Nonsense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PAPLN 89932 hgsc.bcm.edu 36 14 72799250 72799250 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TLE6 79816 hgsc.bcm.edu 36 19 2929266 2929266 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RFX1 5989 hgsc.bcm.edu 36 19 13937266 13937266 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 HAPLN4 404037 hgsc.bcm.edu 36 19 19233262 19233262 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 C19orf2 8725 hgsc.bcm.edu 36 19 35169155 35169155 + Silent SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TSHZ3 57616 hgsc.bcm.edu 36 19 36460241 36460241 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ZNF568 374900 hgsc.bcm.edu 36 19 42133392 42133392 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RYR1 6261 hgsc.bcm.edu 36 19 43668457 43668457 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ZNF160 90338 hgsc.bcm.edu 36 19 58263275 58263275 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 DLC1 10395 hgsc.bcm.edu 36 8 13004677 13004677 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 OPRK1 4986 hgsc.bcm.edu 36 8 54304493 54304493 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PREX2 80243 hgsc.bcm.edu 36 8 69190579 69190579 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CSMD3 114788 hgsc.bcm.edu 36 8 114057365 114057365 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CHD5 450091 hgsc.bcm.edu 36 1 6103768 6103768 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CAMTA1 23261 hgsc.bcm.edu 36 1 7715180 7715180 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 DFFA 1676 hgsc.bcm.edu 36 1 10449854 10449854 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 MPL 4352 hgsc.bcm.edu 36 1 43577747 43577747 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 BSND 7809 hgsc.bcm.edu 36 1 55245492 55245492 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 MIER1 57708 hgsc.bcm.edu 36 1 67184457 67184457 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 USP33 23032 hgsc.bcm.edu 36 1 77952921 77952921 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KCNA2 3737 hgsc.bcm.edu 36 1 110948298 110948298 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FLG 2312 hgsc.bcm.edu 36 1 150552421 150552421 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FLG2 388698 hgsc.bcm.edu 36 1 150590681 150590681 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FLG2 388698 hgsc.bcm.edu 36 1 150595524 150595524 + Silent SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SHC1 6464 hgsc.bcm.edu 36 1 153209366 153209366 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 IFI16 3428 hgsc.bcm.edu 36 1 157290087 157290087 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CAMSAP1L1 23271 hgsc.bcm.edu 36 1 199084782 199084782 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PTPN14 5784 hgsc.bcm.edu 36 1 212616254 212616254 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RAB4A 5867 hgsc.bcm.edu 36 1 227499990 227499990 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 C1orf101 257044 hgsc.bcm.edu 36 1 242847513 242847513 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 OR51T1 401665 hgsc.bcm.edu 36 11 4860129 4860129 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 STK33 65975 hgsc.bcm.edu 36 11 8391760 8391760 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 IGSF22 283284 hgsc.bcm.edu 36 11 18692096 18692096 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 OR5D16 390144 hgsc.bcm.edu 36 11 55363156 55363156 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 AHNAK 79026 hgsc.bcm.edu 36 11 62057006 62057006 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CATSPER1 117144 hgsc.bcm.edu 36 11 65549931 65549931 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TSKU 25987 hgsc.bcm.edu 36 11 76184774 76184774 + Nonsense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 INTS4 92105 hgsc.bcm.edu 36 11 77317236 77317236 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SYTL2 54843 hgsc.bcm.edu 36 11 85114579 85114579 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 MMP27 64066 hgsc.bcm.edu 36 11 102078698 102078698 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 DYNC2H1 79659 hgsc.bcm.edu 36 11 102679121 102679121 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CASP1 834 hgsc.bcm.edu 36 11 104405080 104405080 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ATM 472 hgsc.bcm.edu 36 11 107721757 107721757 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 NQO2 4835 hgsc.bcm.edu 36 6 2955338 2955338 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 AIF1 199 hgsc.bcm.edu 36 6 31692073 31692073 + Missense_Mutation SNP C C G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FOXP4 116113 hgsc.bcm.edu 36 6 41641583 41641583 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TCTE1 202500 hgsc.bcm.edu 36 6 44362063 44362063 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PHF3 23469 hgsc.bcm.edu 36 6 64474069 64474069 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 GRIK2 2901 hgsc.bcm.edu 36 6 102589992 102589992 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RSPH4A 345895 hgsc.bcm.edu 36 6 117058315 117058315 + Missense_Mutation SNP C C G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PTPRK 5796 hgsc.bcm.edu 36 6 128368056 128368056 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FNDC1 84624 hgsc.bcm.edu 36 6 159574150 159574150 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TP53 7157 hgsc.bcm.edu 36 17 7518263 7518263 + Missense_Mutation SNP C C T rs11540652 byHapMap TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TP53 7157 hgsc.bcm.edu 36 17 7519007 7519007 + Silent SNP G G T rs55764374 unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 EVPL 2125 hgsc.bcm.edu 36 17 71516840 71516840 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RUNX1 861 hgsc.bcm.edu 36 21 35153655 35153655 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TTC3 7267 hgsc.bcm.edu 36 21 37447243 37447243 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 NLRC3 197358 hgsc.bcm.edu 36 16 3554281 3554281 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CREBBP 1387 hgsc.bcm.edu 36 16 3726079 3726079 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PRKCB 5579 hgsc.bcm.edu 36 16 24011736 24011736 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SEZ6L2 26470 hgsc.bcm.edu 36 16 29792160 29792160 + Missense_Mutation SNP A A C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SLC9A5 6553 hgsc.bcm.edu 36 16 65857508 65857508 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ZNF469 84627 hgsc.bcm.edu 36 16 87029459 87029459 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 C16orf3 750 hgsc.bcm.edu 36 16 88623074 88623074 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 OSBPL1A 114876 hgsc.bcm.edu 36 18 20151128 20151128 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CNTN4 152330 hgsc.bcm.edu 36 3 2917482 2917482 + Missense_Mutation SNP A A C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ITPR1 3708 hgsc.bcm.edu 36 3 4796291 4796291 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 VHL 7428 hgsc.bcm.edu 36 3 10163302 10163302 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 LTF 4057 hgsc.bcm.edu 36 3 46454454 46454454 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SETD2 29072 hgsc.bcm.edu 36 3 47104651 47104651 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 WDR6 11180 hgsc.bcm.edu 36 3 49026076 49026076 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SPICE1 0 hgsc.bcm.edu 36 3 114670415 114670415 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 LRP6 4040 hgsc.bcm.edu 36 12 12231293 12231293 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KIAA0528 9847 hgsc.bcm.edu 36 12 22557561 22557561 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KRAS 3845 hgsc.bcm.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 STK38L 23012 hgsc.bcm.edu 36 12 27353315 27353315 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FAM186A 121006 hgsc.bcm.edu 36 12 49040816 49040816 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 HOXC11 3227 hgsc.bcm.edu 36 12 52653462 52653462 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PTPRB 5787 hgsc.bcm.edu 36 12 69270172 69270172 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CEP290 80184 hgsc.bcm.edu 36 12 86998293 86998293 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CDK17 0 hgsc.bcm.edu 36 12 95212971 95212971 + Silent SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RAD9B 144715 hgsc.bcm.edu 36 12 109444584 109444584 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TCTN2 79867 hgsc.bcm.edu 36 12 122755125 122755125 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ATP10A 57194 hgsc.bcm.edu 36 15 23510427 23510427 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PAGE2 203569 hgsc.bcm.edu 36 X 55134517 55134517 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ATRX 546 hgsc.bcm.edu 36 X 76824148 76824148 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SLITRK4 139065 hgsc.bcm.edu 36 X 142546169 142546169 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PASD1 139135 hgsc.bcm.edu 36 X 150591512 150591512 + Nonsense_Mutation SNP A A T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 L1CAM 3897 hgsc.bcm.edu 36 X 152788280 152788280 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TMLHE 55217 hgsc.bcm.edu 36 X 154407448 154407448 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 GRIA2 2891 hgsc.bcm.edu 36 4 158503485 158503485 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RAPGEF2 9693 hgsc.bcm.edu 36 4 160484006 160484006 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ODZ3 55714 hgsc.bcm.edu 36 4 183950463 183950463 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FAT1 2195 hgsc.bcm.edu 36 4 187866646 187866646 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TRIML2 205860 hgsc.bcm.edu 36 4 189255285 189255285 + Missense_Mutation SNP A A T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FAM179A 165186 hgsc.bcm.edu 36 2 29113060 29113060 + Silent SNP C C G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 DQX1 165545 hgsc.bcm.edu 36 2 74604673 74604673 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CNNM4 26504 hgsc.bcm.edu 36 2 96791556 96791556 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PDE1A 5136 hgsc.bcm.edu 36 2 182761990 182761990 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SGOL2 151246 hgsc.bcm.edu 36 2 201145885 201145885 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FRMPD1 22844 hgsc.bcm.edu 36 9 37727192 37727192 + Missense_Mutation SNP C C G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TPTE2 93492 hgsc.bcm.edu 36 13 18923364 18923364 + Missense_Mutation SNP T T A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PABPC3 5042 hgsc.bcm.edu 36 13 24569195 24569195 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 NBEA 26960 hgsc.bcm.edu 36 13 35127754 35127754 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FREM2 341640 hgsc.bcm.edu 36 13 38352504 38352504 + Missense_Mutation SNP A A T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RB1 5925 hgsc.bcm.edu 36 13 47935914 47935914 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 MLNR 2862 hgsc.bcm.edu 36 13 48692958 48692958 + Missense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 SLITRK5 26050 hgsc.bcm.edu 36 13 87126217 87126217 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 NALCN 259232 hgsc.bcm.edu 36 13 100642370 100642370 + Missense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PTPLA 9200 hgsc.bcm.edu 36 10 17676300 17676300 + Nonsense_Mutation SNP C C A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 NSUN6 221078 hgsc.bcm.edu 36 10 18977515 18977515 + Silent SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TSPAN14 81619 hgsc.bcm.edu 36 10 82259142 82259142 + Missense_Mutation SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PTEN 5728 hgsc.bcm.edu 36 10 89707608 89707608 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CUTC 51076 hgsc.bcm.edu 36 10 101492937 101492937 + Silent SNP A A G novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 HSPA12A 259217 hgsc.bcm.edu 36 10 118431341 118431341 + Silent SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 DOCK1 1793 hgsc.bcm.edu 36 10 128815974 128815974 + Missense_Mutation SNP G G T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KIAA0947 23379 hgsc.bcm.edu 36 5 5513921 5513921 + Missense_Mutation SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PIK3R1 5295 hgsc.bcm.edu 36 5 67625374 67625374 + Nonsense_Mutation SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FAM81B 153643 hgsc.bcm.edu 36 5 94811666 94811666 + Missense_Mutation SNP T T C novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PCDHA12 56137 hgsc.bcm.edu 36 5 140237017 140237017 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PCDHGA10 56106 hgsc.bcm.edu 36 5 140774420 140774420 + Silent SNP C C T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 FLT4 2324 hgsc.bcm.edu 36 5 179978437 179978437 + Silent SNP G G A novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 RPTN 126638 hgsc.bcm.edu 36 1 150395690 150395725 + In_Frame_Del DEL TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 PRKRA 8575 hgsc.bcm.edu 36 2 179023981 179023982 + Frame_Shift_Del DEL GC GC - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 GC GC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ATR 390502 hgsc.bcm.edu 36 3 143757430 143757430 + Frame_Shift_Del DEL T T - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 CRIPAK 285464 hgsc.bcm.edu 36 4 1378622 1378623 + Frame_Shift_Ins INS - - CA novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 APC 324 hgsc.bcm.edu 36 5 112203671 112203671 + Frame_Shift_Del DEL A A - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KRTAP5-1 387264 hgsc.bcm.edu 36 11 1562697 1562726 + In_Frame_Del DEL CCACAGCCACCCTTGGATCCCCCACAAGAG CCACAGCCACCCTTGGATCCCCCACAAGAG - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 CCACAGCCACCCTTGGATCCCCCACAAGAG CCACAGCCACCCTTGGATCCCCCACAAGAG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 ART5 116969 hgsc.bcm.edu 36 11 3618161 3618162 + In_Frame_Ins INS - - TGG rs3062849 unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 NFRKB 4798 hgsc.bcm.edu 36 11 129241053 129241054 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 AG AG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 UACA 55075 hgsc.bcm.edu 36 15 68779030 68779031 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 AT AT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KRT222 0 hgsc.bcm.edu 36 17 36071797 36071798 + Frame_Shift_Ins INS - - T novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KRTAP4-1 85285 hgsc.bcm.edu 36 17 36594322 36594378 + Frame_Shift_Del DEL CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 TGIF1 7050 hgsc.bcm.edu 36 18 3442223 3442223 + Frame_Shift_Del DEL T T - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2 KRTAP10-7 386675 hgsc.bcm.edu 36 21 44845084 44845098 + Frame_Shift_Del DEL CTGCTGCGCCCCCAG CTGCTGCGCCCCCAG - novel unknown TCGA-AH-6549-01A-11D-1826-10 TCGA-AH-6549-10A-01D-1826-10 CTGCTGCGCCCCCAG CTGCTGCGCCCCCAG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 749f8e6a-864e-4ed2-879a-188d0f153e8d db8dd0b1-6bbd-471c-be21-c24fd1f008e2