Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
POLL	27343	broad.mit.edu	36	10	103330030	103330031	+	Missense_Mutation	DNP	AT	GG	GG	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013274	exon8	c.1327_1328CC	.	.	.	.
GFRA1	2674	broad.mit.edu	36	10	117874978	117874978	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145453	exon5	c.T499A	p.S167T	.	.	.
DIP2C	22982	broad.mit.edu	36	10	381004	381004	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014974	exon27	c.T3278C	p.L1093S	.	.	.
OR10W1	81341	broad.mit.edu	36	11	57792059	57792060	+	De_novo_Start_OutOfFrame	INS	-	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCN2B	6327	broad.mit.edu	36	11	117543006	117543006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004588	exon4	c.C454T	p.P152S	.	.	.
HEPACAM	220296	broad.mit.edu	36	11	124300164	124300164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152722	exon2	c.G97A	p.G33R	.	.	.
FEZ1	9638	broad.mit.edu	36	11	124856716	124856716	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005103	exon3	c.A335G	p.N112S	.	.	.
NDUFS3	4722	broad.mit.edu	36	11	47560290	47560290	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004551	exon5	c.C456G	p.P152P	.	.	.
OR51I2	390064	broad.mit.edu	36	11	5431962	5431962	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004754	exon1	c.G668A	p.R223H	.	.	.
FERMT3	83706	broad.mit.edu	36	11	63735781	63735781	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178443	exon6	c.G772T	p.D258Y	.	.	.
ADRBK1	156	broad.mit.edu	36	11	66808357	66808357	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001619	exon18	c.G1591C	p.A531P	.	.	.
GLT8D2	83468	broad.mit.edu	36	12	102937544	102937544	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031302	exon3	c.C13T	p.R5X	.	.	.
SLC6A13	6540	broad.mit.edu	36	12	205915	205915	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190997	exon7	c.A686G	p.N229S	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_004985	exon2	c.G34A	p.G12S	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.
ACVRL1	94	broad.mit.edu	36	12	50596176	50596177	+	Missense_Mutation	DNP	GT	TG	TG	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077401	exon7	c.1138_1139TG	.	.	.	.
MYF5	4617	broad.mit.edu	36	12	79635435	79635435	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005593	exon1	c.G462A	p.S154S	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31249551	31249551	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166058	exon8	c.G680A	p.R227H	.	.	.
ESD	2098	broad.mit.edu	36	13	46243619	46243619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001984	exon10	c.G782A	p.S261N	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83352466	83352466	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052910	exon1	c.C1178T	p.S393L	.	.	.
SLITRK5	26050	broad.mit.edu	36	13	87125928	87125928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015567	exon2	c.G284A	p.R95H	.	.	.
ACIN1	22985	broad.mit.edu	36	14	22634157	22634157	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164814	exon1	c.C179T	p.A60V	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91541630	91541630	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004239	exon11	c.A2443G	p.I815V	.	.	.
SERPINA1	5265	broad.mit.edu	36	14	93918702	93918702	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127702	exon3	c.T626C	p.V209A	.	.	.
MAGEL2	54551	broad.mit.edu	36	15	21441012	21441012	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019066	exon1	c.G2971A	p.V991I	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472240	22472240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018958	exon1	c.C133T	p.R45C	.	.	.
C15orf41	84529	broad.mit.edu	36	15	34737356	34737356	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130010	exon5	c.C304G	p.L102V	.	.	.
PLA2G4D	283748	broad.mit.edu	36	15	40166871	40166871	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_178034	exon3	c.G174C	p.K58N	.	.	.
PRTG	283659	broad.mit.edu	36	15	53761890	53761890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173814	exon4	c.C640T	p.R214C	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55683786	55683786	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152451	exon2	c.G103A	p.V35I	.	.	.
CYP1A2	1544	broad.mit.edu	36	15	72829341	72829342	+	Missense_Mutation	DNP	AG	CC	CC	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000761	exon2	c.209_210CC	.	.	.	.
RPS2	6187	broad.mit.edu	36	16	1952735	1952736	+	Splice_Site	INS	-	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RUNDC2A	84127	broad.mit.edu	36	16	12044396	12044396	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032167	exon5	c.G389T	p.R130L	.	.	.
AXIN1	8312	broad.mit.edu	36	16	336706	336707	+	Missense_Mutation	DNP	CT	TA	TA	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003502	exon2	c.320_321TA	.	.	.	.
CMTM4	146223	broad.mit.edu	36	16	65213625	65213626	+	Nonsense_Mutation	DNP	AT	CA	CA	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181521	exon4	c.463_464TG	.	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7700732	7700732	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145892	exon13	c.G1163A	p.R388H	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87221939	87221940	+	Missense_Mutation	DNP	CC	TT	TT	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144604	exon15	c.2380_2381TT	.	.	.	.
DHRS13	147015	broad.mit.edu	36	17	24249801	24249801	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144683	exon5	c.C918T	p.A306A	.	.	.
C17orf102	400591	broad.mit.edu	36	17	29930057	29930057	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207454	exon1	c.T356C	p.I119T	.	.	.
SLFN5	162394	broad.mit.edu	36	17	30609838	30609838	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144975	exon2	c.G16T	p.D6Y	.	.	.
KRT37	8688	broad.mit.edu	36	17	36833569	36833569	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_003770	exon2	c.G546A	p.A182A	.	.	.
STAT5B	6777	broad.mit.edu	36	17	37622719	37622719	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012448	exon11	c.G1365C	p.L455L	.	.	.
PSMC5	5705	broad.mit.edu	36	17	59261950	59261950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002805	exon7	c.G602A	p.R201Q	.	.	.
TP53	7157	broad.mit.edu	36	17	7517843	7517843	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_001126114	exon8	c.G820C	p.V274L	 TP53,central_nervous_system,brain,Substitution - Missense,-2 	.	.
KCNAB3	9196	broad.mit.edu	36	17	7769755	7769755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004732	exon7	c.G509A	p.R170Q	.	.	.
GUCY2D	3000	broad.mit.edu	36	17	7848090	7848091	+	Missense_Mutation	DNP	AT	CC	CC	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000180	exon3	c.917_918CC	.	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41501922	41501922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007163	exon14	c.C1844T	p.A615V	.	.	.
ATP5A1	498	broad.mit.edu	36	18	41925701	41925701	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004046	exon3	c.A254G	p.H85R	.	.	.
HAUS8	93323	broad.mit.edu	36	19	17031455	17031455	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001011699	exon6	c.G329T	p.S110I	.	.	.
ARRDC2	27106	broad.mit.edu	36	19	17981673	17981674	+	Missense_Mutation	DNP	AG	GC	GC	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025604	exon5	c.659_660GC	.	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461440	36461440	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020856	exon2	c.G1099A	p.G367S	.	.	.
ZFR2	23217	broad.mit.edu	36	19	3774262	3774262	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015174	exon8	c.C1353A	p.G451G	.	.	.
PNMAL1	55228	broad.mit.edu	36	19	51665799	51665799	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018215	exon2	c.G334T	p.E112X	.	.	.
CD53	963	broad.mit.edu	36	1	111239134	111239134	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_000560	exon5	c.C357T	p.T119T	.	.	.
GBA	2629	broad.mit.edu	36	1	153476374	153476374	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000157	exon3	c.C234T	p.R78R	.	.	.
NDUFS2	4720	broad.mit.edu	36	1	159445918	159445918	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004550	exon6	c.G536A	p.R179H	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169228056	169228056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025063	exon12	c.C1156T	p.R386C	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180007952	180007952	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000721	exon37	c.G5101A	p.V1701M	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194665432	194665432	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198503	exon9	c.G717T	p.T239T	.	.	.
DISP1	84976	broad.mit.edu	36	1	221243514	221243514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032890	exon8	c.C2152T	p.R718C	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234801585	234801585	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018072	exon27	c.G3732T	p.E1244D	.	.	.
ZBTB8A	653121	broad.mit.edu	36	1	32838496	32838496	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040441	exon5	c.G1215A	p.E405E	.	.	.
COL9A2	1298	broad.mit.edu	36	1	40539475	40539475	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001852	exon32	c.G2036C	p.R679P	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47053491	47053491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_001099772	exon8	c.C1041T	p.R347R	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44022337	44022338	+	Frame_Shift_Ins	INS	-	AGCG	AGCG	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022095	exon14	c.1937_1938insCGCT	p.D646fs	.	.	.
SLC2A10	81031	broad.mit.edu	36	20	44791519	44791519	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030777	exon4	c.A1532G	p.Q511R	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44022332	44022334	+	In_Frame_Del	DEL	GCT	-	-	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022095	exon14	c.1940_1942del	p.647_648del	.	.	.
ZNF295	49854	broad.mit.edu	36	21	42284858	42284858	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098403	exon4	c.A1813C	p.T605P	.	.	.
ZMAT5	55954	broad.mit.edu	36	22	28457246	28457247	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019103	exon7	c.481_482insG	p.W161fs	.	.	.
C22orf25	128989	broad.mit.edu	36	22	18410945	18410945	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152906	exon3	c.A124G	p.N42D	.	.	.
CSF2RB	1439	broad.mit.edu	36	22	35661340	35661340	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000395	exon11	c.G1317C	p.V439V	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144872355	144872355	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171653	exon7	c.C2797T	p.R933W	.	.	.
LRP2	4036	broad.mit.edu	36	2	169771391	169771391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon39	c.G7085A	p.G2362E	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198657721	198657721	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006226	exon2	c.C1235T	p.S412F	.	.	.
ACADL	33	broad.mit.edu	36	2	210777620	210777620	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001608	exon7	c.G800A	p.R267Q	.	.	.
CIB4	130106	broad.mit.edu	36	2	26671590	26671590	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029881	exon4	c.G286A	p.A96T	.	.	.
RETSAT	54884	broad.mit.edu	36	2	85432437	85432437	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017750	exon2	c.G232C	p.G78R	.	.	.
PPP2R3A	5523	broad.mit.edu	36	3	137203120	137203121	+	Frame_Shift_Ins	INS	-	TG	TG	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-	-	TG	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002718	exon2	c.90_91insTG	p.Y30fs	.	.	.
CAMKV	79012	broad.mit.edu	36	3	49873888	49873889	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024046	exon5	c.429_430insT	p.H143fs	.	.	.
DVL3	1857	broad.mit.edu	36	3	185367002	185367002	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004423	exon9	c.G978A	p.P326P	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52815439	52815439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002217	exon18	c.G2033A	p.R678H	.	.	.
CPOX	1371	broad.mit.edu	36	3	99787112	99787112	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_000097	exon5	c.G1035A	p.P345P	.	.	.
CAMKV	79012	broad.mit.edu	36	3	49873891	49873891	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024046	exon5	c.426delG	p.V142fs	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158500578	158500578	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_001083620	exon13	c.C1983T	p.A661A	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184852776	184852776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199053	exon23	c.G2534A	p.C845Y	.	.	.
NFXL1	152518	broad.mit.edu	36	4	47587470	47587470	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152995	exon12	c.C1460A	p.P487H	.	.	.
SGCB	6443	broad.mit.edu	36	4	52594458	52594458	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000232	exon2	c.139delA	p.I47fs	.	.	.
SGCB	6443	broad.mit.edu	36	4	52594476	52594479	+	Frame_Shift_Del	DEL	TAAA	-	-	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	TAAA	TAAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000232	exon2	c.118_121del	p.40_41del	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101736955	101736956	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173488	exon13	c.2160_2161insG	p.X720delinsX	.	.	.
RGMB	285704	broad.mit.edu	36	5	98157279	98157280	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012761	exon5	c.1359_1360insA	p.G453fs	.	.	.
APC	324	broad.mit.edu	36	5	112202815	112202815	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G3571T	p.E1191X	.	.	.
CHSY3	337876	broad.mit.edu	36	5	129548035	129548035	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175856	exon3	c.T1301A	p.L434H	.	.	.
PSD2	84249	broad.mit.edu	36	5	139177319	139177319	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032289	exon5	c.C1086T	p.D362D	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13938213	13938213	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_001369	exon19	c.C2868T	p.R956R	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147003911	147003911	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014790	exon7	c.C1127A	p.S376Y	.	.	.
FOXI1	2299	broad.mit.edu	36	5	169465754	169465754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144769	exon1	c.C215T	p.P72L	.	.	.
KCNIP1	30820	broad.mit.edu	36	5	170093466	170093466	+	Nonsense_Mutation	SNP	G	T	T	rs34559363	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034838	exon7	c.G616T	p.E206X	.	.	.
NSD1	64324	broad.mit.edu	36	5	176654307	176654307	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_022455	exon23	c.G7332A	p.Q2444Q	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33684730	33684730	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030955	exon9	c.G1433T	p.C478F	.	.	.
ADCY2	108	broad.mit.edu	36	5	7762437	7762438	+	Missense_Mutation	DNP	GC	AA	AA	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020546	exon10	c.1515_1516AA	.	.	.	.
JARID2	3720	broad.mit.edu	36	6	15612768	15612768	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004973	exon9	c.G2507C	p.C836S	.	.	.
PHF1	5252	broad.mit.edu	36	6	33491777	33491777	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024165	exon15	c.G1628A	p.R543Q	.	.	.
GPR111	222611	broad.mit.edu	36	6	47757018	47757018	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153839	exon7	c.T560C	p.F187S	.	.	.
DST	667	broad.mit.edu	36	6	56435895	56435895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015548	exon82	c.C15037T	p.R5013C	.	.	.
PGM3	5238	broad.mit.edu	36	6	83935709	83935709	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015599	exon13	c.C1592A	p.A531D	.	.	.
HTR1E	3354	broad.mit.edu	36	6	87782207	87782207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000865	exon2	c.G436A	p.V146I	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88027443	88027443	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015021	exon8	c.T7377G	p.N2459K	.	.	.
C7orf66	154907	broad.mit.edu	36	7	108311354	108311354	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024607	exon2	c.C294G	p.V98V	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122599093	122599093	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022444	exon3	c.G330A	p.L110L	.	.	.
AHCYL2	23382	broad.mit.edu	36	7	128853555	128853555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015328	exon16	c.G1744A	p.D582N	.	.	.
PON2	5445	broad.mit.edu	36	7	94878953	94878953	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000305	exon5	c.G442A	p.A148T	.	.	.
CNPY4	245812	broad.mit.edu	36	7	99557904	99557904	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152755	exon2	c.G205T	p.D69Y	.	.	.
ZCWPW1	55063	broad.mit.edu	36	7	99851907	99851907	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017984	exon7	c.G588A	p.K196K	.	.	.
CCM2	83605	broad.mit.edu	36	7	45075974	45075974	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031443	exon6	c.634delC	p.L212fs	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12032599	12032599	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201402	exon1	c.T1080C	p.T360T	.	.	.
LY6D	8581	broad.mit.edu	36	8	143864015	143864015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003695	exon2	c.C143T	p.T48M	.	.	.
EBF2	64641	broad.mit.edu	36	8	25774508	25774508	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022659	exon13	c.C1316G	p.S439X	.	.	.
PRKDC	5591	broad.mit.edu	36	8	49029011	49029012	+	Missense_Mutation	DNP	AG	CA	CA	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081640	exon6	c.529_530TG	.	.	.	.
NSMAF	8439	broad.mit.edu	36	8	59698350	59698350	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_003580	exon9	c.A540G	p.T180T	.	.	.
HEY1	23462	broad.mit.edu	36	8	80841464	80841464	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012258	exon4	c.T308C	p.M103T	.	.	.
DMRT2	10655	broad.mit.edu	36	9	1043815	1043815	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130865	exon4	c.A619G	p.I207V	.	.	.
AKNA	80709	broad.mit.edu	36	9	116148077	116148078	+	Missense_Mutation	DNP	AA	GT	GT	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030767	exon18	c.3547_3548AC	.	.	.	.
DAB2IP	153090	broad.mit.edu	36	9	123572700	123572701	+	Missense_Mutation	DNP	GC	CG	CG	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032552	exon11	c.1870_1871CG	.	.	.	.
OBP2B	29989	broad.mit.edu	36	9	135073700	135073700	+	Missense_Mutation	SNP	C	G	G	rs28584111	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014581	exon2	c.G183C	p.K61N	.	.	.
KIAA1797	54914	broad.mit.edu	36	9	20919413	20919413	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_017794	exon29	c.G3135A	p.T1045T	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32533404	32533404	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195622	exon2	c.T924G	p.N308K	.	.	.
XKRX	402415	broad.mit.edu	36	X	100056284	100056284	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A014-01A-02W-A00K-09	TCGA-AG-A014-10A-01W-A00K-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212559	exon3	c.G1049A	p.G350D	.	.	.