Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ITIH5 80760 hgsc.bcm.edu 36 10 7658870 7658870 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_032817 exon6 c.G888A p.S296S . . . WAPAL 23063 hgsc.bcm.edu 36 10 88203423 88203429 + Frame_Shift_Del DEL CGATGAT CGATGAT - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 CGATGAT CGATGAT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_015045 exon13 c.2797_2803del p.933_935del . . . ARHGAP20 57569 hgsc.bcm.edu 36 11 109956706 109956707 + Frame_Shift_Ins INS - - CA novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_020809 exon16 c.2174_2175insTG p.K725fs . . . MRGPRX4 117196 hgsc.bcm.edu 36 11 18152329 18152330 + In_Frame_Ins INS - - TAC novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_054032 exon1 c.950_951insTAC p.G317delinsGT . . . GYLTL1B 120071 hgsc.bcm.edu 36 11 45902687 45902688 + Frame_Shift_Ins INS - - GG novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_152312 exon5 c.547_548insGG p.K183fs . . . RBM4B 83759 hgsc.bcm.edu 36 11 66192945 66192946 + Frame_Shift_Ins INS - - A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_031492 exon3 c.806_807insT p.D269fs . . . PANX3 116337 hgsc.bcm.edu 36 11 123986825 123986825 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_052959 exon1 c.G163A p.A55T . . . CARS 833 hgsc.bcm.edu 36 11 2998047 2998047 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_139273 exon10 c.C996T p.S332S . . . MAPK8IP1 9479 hgsc.bcm.edu 36 11 45883803 45883803 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_005456 exon12 c.G2091A p.Q697Q . . . GYLTL1B 120071 hgsc.bcm.edu 36 11 45902692 45902692 + Silent SNP G G C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_152312 exon5 c.G552C p.L184L . . . MS4A10 341116 hgsc.bcm.edu 36 11 60316334 60316334 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_206893 exon4 c.G324A p.L108L . . . AHNAK 79026 hgsc.bcm.edu 36 11 62045250 62045250 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001620 exon5 c.C13215T p.V4405V . . . AHNAK 79026 hgsc.bcm.edu 36 11 62055312 62055312 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001620 exon5 c.A3153G p.K1051K . . . ILK 3611 hgsc.bcm.edu 36 11 6586005 6586005 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001014795 exon2 c.T243C p.D81D . . . TROAP 10024 hgsc.bcm.edu 36 12 48010402 48010403 + Frame_Shift_Ins INS - - CA novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_005480 exon13 c.1507_1508insCA p.P503fs . . . STAB2 55576 hgsc.bcm.edu 36 12 102613695 102613695 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_017564 exon33 c.T3525C p.F1175F . . . FICD 11153 hgsc.bcm.edu 36 12 107437233 107437233 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_007076 exon3 c.G1228A p.D410N . . . ANAPC7 51434 hgsc.bcm.edu 36 12 109296335 109296335 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_016238 exon11 c.G1797A p.Q599Q . . . DHX37 57647 hgsc.bcm.edu 36 12 124007608 124007608 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_032656 exon17 c.C2184T p.P728P . . . TMEM132D 121256 hgsc.bcm.edu 36 12 128129215 128129215 + Silent SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_133448 exon8 c.T1932C p.S644S . . . KRAS 3845 hgsc.bcm.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_033360 exon2 c.G35A p.G12D KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . LRRK2 120892 hgsc.bcm.edu 36 12 39000140 39000140 + Silent SNP A A G rs11176013 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_198578 exon34 c.A4911G p.K1637K . . . DEPDC4 120863 hgsc.bcm.edu 36 12 99174008 99174008 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_152317 exon4 c.C828T p.I276I . . . CENPJ 55835 hgsc.bcm.edu 36 13 24378370 24378370 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_018451 exon7 c.A1806G p.E602E . . . DGKH 160851 hgsc.bcm.edu 36 13 41693469 41693469 + Missense_Mutation SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_178009 exon29 c.T3512C p.I1171T . . . RB1 5925 hgsc.bcm.edu 36 13 47851742 47851742 + Silent SNP T T G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000321 exon14 c.T1344G p.L448L . . . PCDH20 64881 hgsc.bcm.edu 36 13 60883848 60883848 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_022843 exon2 c.C2385T p.F795F . . . SLITRK1 114798 hgsc.bcm.edu 36 13 83352912 83352913 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_052910 exon1 c.731_732del p.244_244del . . . MMP14 4323 hgsc.bcm.edu 36 14 22381546 22381546 + Silent SNP A A T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_004995 exon4 c.A468T p.P156P . . . ZFYVE1 53349 hgsc.bcm.edu 36 14 72511290 72511290 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_178441 exon7 c.C692T p.A231V . . . CATSPERB 79820 hgsc.bcm.edu 36 14 91209034 91209034 + Missense_Mutation SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_024764 exon13 c.T1058C p.I353T . . . OCA2 4948 hgsc.bcm.edu 36 15 25870544 25870544 + Silent SNP A A C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000275 exon18 c.T1932G p.P644P . . . CYP19A1 1588 hgsc.bcm.edu 36 15 49298123 49298123 + Missense_Mutation SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_031226 exon7 c.T650C p.I217T . . . AQP9 366 hgsc.bcm.edu 36 15 56254461 56254461 + Silent SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_020980 exon4 c.A429G p.A143A . . . CILP 8483 hgsc.bcm.edu 36 15 63283681 63283681 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_003613 exon6 c.C897T p.I299I . . . CILP 8483 hgsc.bcm.edu 36 15 63283717 63283717 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_003613 exon6 c.C861T p.L287L . . . CILP 8483 hgsc.bcm.edu 36 15 63283747 63283747 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_003613 exon6 c.C831T p.I277I . . . CILP 8483 hgsc.bcm.edu 36 15 63283756 63283756 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_003613 exon6 c.C822T p.I274I . . . CILP 8483 hgsc.bcm.edu 36 15 63283906 63283906 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_003613 exon6 c.C672T p.F224F . . . DPP8 54878 hgsc.bcm.edu 36 15 63560980 63560980 + Silent SNP T T G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_197960 exon10 c.A1092C p.L364L . . . POLG 5428 hgsc.bcm.edu 36 15 87667645 87667645 + Silent SNP A A T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001126131 exon13 c.T2259A p.P753P . . . C16orf93 90835 hgsc.bcm.edu 36 16 30678491 30678491 + Silent SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001014979 exon5 c.T525C p.F175F . . . NAE1 8883 hgsc.bcm.edu 36 16 65412929 65412929 + Missense_Mutation SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_003905 exon7 c.T436C p.S146P . . . FAM65A 79567 hgsc.bcm.edu 36 16 66136379 66136379 + Silent SNP T T G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001193524 exon17 c.T2931G p.S977S . . . GFOD2 81577 hgsc.bcm.edu 36 16 66267087 66267087 + Silent SNP G G C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_030819 exon3 c.C630G p.A210A . . . FANCA 2175 hgsc.bcm.edu 36 16 88378805 88378805 + Missense_Mutation SNP G G C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000135 exon15 c.C1428G p.F476L . . . SLC12A3 6559 hgsc.bcm.edu 36 16 55464071 55464072 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000339 exon8 c.967_968del p.323_323del . . . SLC43A2 124935 hgsc.bcm.edu 36 17 1466703 1466704 + Frame_Shift_Ins INS - - AG novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_152346 exon3 c.271_272insCT p.A91fs . . . MRC2 9902 hgsc.bcm.edu 36 17 58097270 58097271 + In_Frame_Ins INS - - TCT novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_006039 exon3 c.604_605insTCT p.T202delinsIS . . . NAT9 26151 hgsc.bcm.edu 36 17 70279956 70279957 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_015654 exon5 c.390_391insA p.S130fs . . . TMEM104 54868 hgsc.bcm.edu 36 17 70343924 70343925 + In_Frame_Ins INS - - ACTGCA novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_017728 exon10 c.994_995insACTGCA p.D332delinsDCN . . . UNC13D 201294 hgsc.bcm.edu 36 17 71337726 71337727 + Frame_Shift_Ins INS - - C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_199242 exon30 c.2932_2933insG p.L978fs . . . PHF12 57649 hgsc.bcm.edu 36 17 24265131 24265131 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001033561 exon8 c.A1185G p.A395A . . . ACACA 31 hgsc.bcm.edu 36 17 32528938 32528938 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_198834 exon53 c.C6660T p.A2220A . . . GAST 2520 hgsc.bcm.edu 36 17 37125608 37125608 + Silent SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000805 exon3 c.A264G p.G88G . . . PPY 5539 hgsc.bcm.edu 36 17 39374384 39374384 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_002722 exon2 c.A165G p.R55R . . . TP53 7157 hgsc.bcm.edu 36 17 7517807 7517807 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001126117 exon4 c.G460A p.E154K TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . RNF213 57674 hgsc.bcm.edu 36 17 75933731 75933731 + Missense_Mutation SNP G G A rs9674961 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_020914 exon30 c.G7148A p.S2383N . . . MED24 9862 hgsc.bcm.edu 36 17 35442860 35442861 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001079518 exon7 c.757_758del p.253_253del . . . MAP2K4 6416 hgsc.bcm.edu 36 17 11969335 11969335 + Splice_Site SNP G G T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 . . . . . . . EPB41L3 23136 hgsc.bcm.edu 36 18 5400583 5400583 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_012307 exon14 c.G2103A p.G701G . . . C19orf10 56005 hgsc.bcm.edu 36 19 4611748 4611749 + Frame_Shift_Ins INS - - CATC novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_019107 exon4 c.302_303insGATG p.S101_Y102delinsX . . . NUP62 23636 hgsc.bcm.edu 36 19 55104496 55104497 + Frame_Shift_Ins INS - - A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_153718 exon2 c.381_382insT p.S127fs . . . APC2 10297 hgsc.bcm.edu 36 19 1413030 1413030 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_005883 exon14 c.G1707A p.A569A . . . ZNF556 80032 hgsc.bcm.edu 36 19 2827218 2827218 + Missense_Mutation SNP A A C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A C C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_024967 exon3 c.A258C p.K86N . . . ZNF556 80032 hgsc.bcm.edu 36 19 2829138 2829138 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_024967 exon4 c.G1182A p.G394G . . . TSHZ3 57616 hgsc.bcm.edu 36 19 36460121 36460121 + Silent SNP C C G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_020856 exon2 c.G2418C p.V806V . . . U2AF1L4 199746 hgsc.bcm.edu 36 19 40927085 40927085 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001040425 exon3 c.C210T p.L70L . . . PRKD2 25865 hgsc.bcm.edu 36 19 51906071 51906071 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_016457 exon3 c.G444A p.A148A . . . MUM1 84939 hgsc.bcm.edu 36 19 1317323 1317327 + Frame_Shift_Del DEL GAGAT GAGAT - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 GAGAT GAGAT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_032853 exon8 c.1307_1311del p.436_437del . . . ZNF222 7673 hgsc.bcm.edu 36 19 49228670 49228671 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_013360 exon4 c.1003_1004del p.335_335del . . . NLRP11 204801 hgsc.bcm.edu 36 19 61012914 61012917 + Frame_Shift_Del DEL CCTC CCTC - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 CCTC CCTC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_145007 exon5 c.871_874del p.291_292del . . . PDE4B 5142 hgsc.bcm.edu 36 1 66610782 66610783 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001037341 exon17 c.2044_2045insT p.L682fs . . . S1PR1 1901 hgsc.bcm.edu 36 1 101478260 101478260 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001400 exon2 c.G1132A p.V378I . . . GJA8 2703 hgsc.bcm.edu 36 1 145847225 145847225 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_005267 exon2 c.C519T p.Y173Y . . . KPRP 448834 hgsc.bcm.edu 36 1 151000020 151000020 + Silent SNP G G T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001025231 exon2 c.G1332T p.P444P . . . APOA1BP 128240 hgsc.bcm.edu 36 1 154828982 154828982 + Missense_Mutation SNP C C G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_144772 exon4 c.C412G p.P138A . . . FCRL5 83416 hgsc.bcm.edu 36 1 155764297 155764297 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_031281 exon9 c.G1694A p.R565H . . . CD5L 922 hgsc.bcm.edu 36 1 156070981 156070981 + Silent SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_005894 exon4 c.G558T p.L186L . . . ASTN1 460 hgsc.bcm.edu 36 1 175100103 175100103 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_004319 exon23 c.G3825A p.T1275T . . . C4BPA 722 hgsc.bcm.edu 36 1 205384625 205384625 + Silent SNP T T A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000715 exon12 c.T1734A p.I578I . . . ECE1 1889 hgsc.bcm.edu 36 1 21471846 21471846 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001113347 exon2 c.C390T p.G130G . . . PLD5 200150 hgsc.bcm.edu 36 1 240343849 240343849 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001195811 exon7 c.G850A p.D284N . . . C1orf71 163882 hgsc.bcm.edu 36 1 244877231 244877231 + Missense_Mutation SNP G G T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_152609 exon9 c.G1105T p.A369S . . . SLC9A1 6548 hgsc.bcm.edu 36 1 27313150 27313150 + Missense_Mutation SNP G G C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_003047 exon2 c.C567G p.I189M . . . LRRC8C 84230 hgsc.bcm.edu 36 1 89951748 89951748 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_032270 exon3 c.G1031A p.R344H . . . PALMD 54873 hgsc.bcm.edu 36 1 99924911 99924911 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_017734 exon4 c.C343T p.R115W . . . CCNL2 81669 hgsc.bcm.edu 36 1 1312750 1312755 + In_Frame_Del DEL CGGTGG CGGTGG - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 CGGTGG CGGTGG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_030937 exon11 c.1282_1287del p.428_429del . . . C1orf222 339457 hgsc.bcm.edu 36 1 1845116 1845118 + In_Frame_Del DEL GCT GCT - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 GCT GCT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 . . . . . . . KRTAP19-2 337969 hgsc.bcm.edu 36 21 30781482 30781482 + Nonsense_Mutation SNP G G T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_181608 exon1 c.C57A p.C19X . . . NR4A2 4929 hgsc.bcm.edu 36 2 156892686 156892687 + Frame_Shift_Ins INS - - TA novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_006186 exon5 c.1081_1082insTA p.P361fs . . . KLF11 8462 hgsc.bcm.edu 36 2 10103996 10103996 + Missense_Mutation SNP T T A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001177716 exon2 c.T260A p.L87Q . . . IL1R2 7850 hgsc.bcm.edu 36 2 102009048 102009048 + Missense_Mutation SNP A A T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_004633 exon8 c.A931T p.I311F . . . TTN 7273 hgsc.bcm.edu 36 2 179375218 179375218 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_133432 exon3 c.G187A p.A63T . . . ABCG5 64240 hgsc.bcm.edu 36 2 43904557 43904557 + Silent SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_022436 exon9 c.G1323T p.L441L . . . PLGLB1 5343 hgsc.bcm.edu 36 2 87098210 87098210 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001032392 exon2 c.A162G p.E54E . . . CNGA3 1261 hgsc.bcm.edu 36 2 98379145 98379145 + Silent SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001079878 exon7 c.C1026A p.T342T . . . TNS1 7145 hgsc.bcm.edu 36 2 218387917 218387919 + In_Frame_Del DEL AGA AGA - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_022648 exon25 c.4378_4380del p.1460_1460del . . . PCCB 5096 hgsc.bcm.edu 36 3 137528769 137528770 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000532 exon12 c.1281_1282insT p.V427fs . . . ACVR2B 93 hgsc.bcm.edu 36 3 38493797 38493798 + Frame_Shift_Ins INS - - C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001106 exon2 c.68_69insC p.E23fs . . . PTPRG 5793 hgsc.bcm.edu 36 3 62164403 62164404 + Frame_Shift_Ins INS - - G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_002841 exon12 c.1894_1895insG p.R632fs . . . ZNF80 7634 hgsc.bcm.edu 36 3 115437952 115437952 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_007136 exon1 c.A660G p.K220K . . . ZNF80 7634 hgsc.bcm.edu 36 3 115438464 115438464 + Missense_Mutation SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_007136 exon1 c.A148G p.K50E . . . ATR 545 hgsc.bcm.edu 36 3 143694679 143694679 + Silent SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001184 exon35 c.T6063C p.I2021I . . . MAP4 4134 hgsc.bcm.edu 36 3 47932782 47932782 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001134364 exon7 c.A1539G p.E513E . . . EPHA3 2042 hgsc.bcm.edu 36 3 89473812 89473812 + Silent SNP G G T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_182644 exon5 c.G1188T p.V396V . . . HAND2 9464 hgsc.bcm.edu 36 4 174686609 174686609 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_021973 exon1 c.C407T p.S136F . . . HAND2 9464 hgsc.bcm.edu 36 4 174686611 174686611 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_021973 exon1 c.C405T p.L135L . . . HAND2 9464 hgsc.bcm.edu 36 4 174686671 174686671 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_021973 exon1 c.C345T p.I115I . . . KIT 3815 hgsc.bcm.edu 36 4 55294073 55294073 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001093772 exon17 c.C2430T p.A810A . . . ANK2 287 hgsc.bcm.edu 36 4 114497559 114497560 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001148 exon38 c.8336_8337del p.2779_2779del . . . DCHS2 54798 hgsc.bcm.edu 36 4 155473354 155473355 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_017639 exon9 c.1958_1959del p.653_653del . . . FAT2 2196 hgsc.bcm.edu 36 5 150928616 150928617 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001447 exon1 c.70_71insA p.G24fs . . . PDZD2 23037 hgsc.bcm.edu 36 5 32134434 32134435 + Frame_Shift_Ins INS - - A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_178140 exon22 c.8155_8156insA p.P2719fs . . . TCERG1 10915 hgsc.bcm.edu 36 5 145818714 145818714 + Silent SNP A A T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_006706 exon4 c.A513T p.S171S . . . C5orf54 63920 hgsc.bcm.edu 36 5 159754638 159754638 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_022090 exon2 c.C438T p.I146I . . . GABRG2 2566 hgsc.bcm.edu 36 5 161512752 161512752 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_198903 exon11 c.G1348A p.E450K . . . BHMT2 23743 hgsc.bcm.edu 36 5 78401370 78401370 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001178005 exon1 c.T9C p.P3P . . . BHMT2 23743 hgsc.bcm.edu 36 5 78401377 78401377 + Missense_Mutation SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001178005 exon1 c.C16A p.R6S . . . BEND3 57673 hgsc.bcm.edu 36 6 107498344 107498344 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001080450 exon5 c.C744T p.L248L . . . GPR6 2830 hgsc.bcm.edu 36 6 110408013 110408013 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_005284 exon1 c.G1005A p.E335E . . . REV3L 5980 hgsc.bcm.edu 36 6 111739015 111739015 + Silent SNP T T A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_002912 exon29 c.A8745T p.G2915G . . . JARID2 3720 hgsc.bcm.edu 36 6 15609431 15609431 + Missense_Mutation SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_004973 exon8 c.T2260C p.F754L . . . ZDHHC14 79683 hgsc.bcm.edu 36 6 157986838 157986838 + Silent SNP C C G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_153746 exon6 c.C834G p.S278S . . . PARK2 5071 hgsc.bcm.edu 36 6 162784366 162784366 + Missense_Mutation SNP G G T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_013987 exon2 c.C137A p.A46E . . . HLA-DPB1 3115 hgsc.bcm.edu 36 6 33160746 33160746 + Silent SNP T T C rs1042187 byCluster;byFrequency TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_002121 exon3 c.C406C p.L136L . . . PTK7 5754 hgsc.bcm.edu 36 6 43234652 43234652 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_002821 exon18 c.T2841C p.S947S . . . BAI3 577 hgsc.bcm.edu 36 6 70127914 70127914 + Missense_Mutation SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001704 exon29 c.A4028G p.Y1343C BAI3,lung,NS,Substitution - Missense,+1 . . CD109 135228 hgsc.bcm.edu 36 6 74553832 74553832 + Missense_Mutation SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001159588 exon20 c.C2261A p.P754H . . . SYTL3 94120 hgsc.bcm.edu 36 6 159004369 159004370 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001009991 exon5 c.81_82del p.27_28del . . . MLL3 58508 hgsc.bcm.edu 36 7 151576004 151576005 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_170606 exon14 c.2448_2449insA p.Y816_I817delinsX . . . MEPCE 56257 hgsc.bcm.edu 36 7 99868548 99868549 + Frame_Shift_Ins INS - - G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_019606 exon2 c.1742_1743insG p.L581fs . . . SRRT 51593 hgsc.bcm.edu 36 7 100320103 100320103 + Silent SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001128853 exon7 c.C936A p.G312G . . . LAMB4 22798 hgsc.bcm.edu 36 7 107504721 107504721 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_007356 exon17 c.C2028T p.I676I . . . NRCAM 4897 hgsc.bcm.edu 36 7 107667705 107667705 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001193584 exon4 c.G40A p.A14T . . . FOXP2 93986 hgsc.bcm.edu 36 7 114055869 114055869 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001172766 exon4 c.C297T p.I99I . . . KIAA1324L 222223 hgsc.bcm.edu 36 7 86380337 86380337 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001142749 exon14 c.G1851A p.S617S . . . AKAP9 10142 hgsc.bcm.edu 36 7 91564442 91564442 + Silent SNP A A G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_147185 exon41 c.A10209G p.K3403K . . . TAF6 6878 hgsc.bcm.edu 36 7 99548415 99548415 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001190415 exon6 c.G627A p.Q209Q . . . NRG1 3084 hgsc.bcm.edu 36 8 32741288 32741289 + Frame_Shift_Ins INS - - G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_013957 exon12 c.1740_1741insG p.G580fs . . . PABPC1 26986 hgsc.bcm.edu 36 8 101791046 101791046 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_002568 exon8 c.C1062T p.N354N . . . UNQ9391 203074 hgsc.bcm.edu 36 8 10424608 10424608 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001197020 exon2 c.C336T p.S112S . . . SH2D4A 63898 hgsc.bcm.edu 36 8 19295239 19295239 + Silent SNP T T C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_022071 exon9 c.T1179C p.H393H . . . SH2D4A 63898 hgsc.bcm.edu 36 8 19295247 19295247 + Missense_Mutation SNP T T G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_022071 exon9 c.T1187G p.I396S . . . ST18 9705 hgsc.bcm.edu 36 8 53247176 53247176 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_014682 exon10 c.C798T p.P266P . . . PLAG1 5324 hgsc.bcm.edu 36 8 57243316 57243316 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001114634 exon3 c.C67T p.R23C . . . CA8 767 hgsc.bcm.edu 36 8 61341081 61341081 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_004056 exon3 c.G374A p.R125H . . . TTPA 7274 hgsc.bcm.edu 36 8 64160988 64160988 + Missense_Mutation SNP G G C novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000370 exon1 c.C147G p.D49E . . . ZBTB26 57684 hgsc.bcm.edu 36 9 124721683 124721683 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_020924 exon2 c.C352T p.R118W . . . C9orf114 51490 hgsc.bcm.edu 36 9 130629173 130629173 + Silent SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_016390 exon4 c.G327T p.V109V . . . RRAGA 10670 hgsc.bcm.edu 36 9 19040161 19040161 + Silent SNP G G A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_006570 exon1 c.G504A p.T168T . . . TMEM2 23670 hgsc.bcm.edu 36 9 73514050 73514050 + Missense_Mutation SNP C C G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001135820 exon16 c.G2741C p.S914T . . . DRP2 1821 hgsc.bcm.edu 36 X 100396123 100396123 + Silent SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001939 exon18 c.C2031T p.F677F . . . UPF3B 65109 hgsc.bcm.edu 36 X 118856472 118856472 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_080632 exon9 c.G893A p.R298K . . . ZCCHC5 203430 hgsc.bcm.edu 36 X 77799564 77799564 + Missense_Mutation SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_152694 exon2 c.G1010T p.G337V . . . SATL1 340562 hgsc.bcm.edu 36 X 84249182 84249182 + Missense_Mutation SNP T T G novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001012980 exon1 c.A1449C p.E483D . . . KAL1 3730 hgsc.bcm.edu 36 X 8513403 8513403 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_000216 exon6 c.G761A p.R254K . . . LAS1L 81887 hgsc.bcm.edu 36 X 64671241 64671242 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001170650 exon1 c.79_80del p.27_27del . . . NXF5 55998 hgsc.bcm.edu 36 X 100978371 100978371 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 . . . . . . . NLGN4Y 22829 hgsc.bcm.edu 36 Y 15243706 15243706 + Missense_Mutation SNP C C A novel unknown TCGA-AG-A00Y-01A-02W-A005-10 TCGA-AG-A00Y-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID b50ae1df-ee6f-4a5e-ba4b-c962d740ab22 a5a6325b-e91e-41d7-86c7-5933c8c59c35 NM_001164238 exon1 c.C313A p.Q105K . . .