Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target PDZD8 118987 hgsc.bcm.edu 36 10 119032943 119032943 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_173791 exon5 c.C3291T p.G1097G . . . MKI67 4288 hgsc.bcm.edu 36 10 129800465 129800465 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001145966 exon8 c.A811G p.I271V . . . TSPAN14 81619 hgsc.bcm.edu 36 10 82263770 82263770 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_030927 exon7 c.A592G p.T198A . . . KIAA1377 57562 hgsc.bcm.edu 36 11 101337963 101337963 + Silent SNP T T C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_020802 exon6 c.T987C p.D329D . . . ARHGAP20 57569 hgsc.bcm.edu 36 11 109982549 109982549 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_020809 exon10 c.C910T p.Q304X . . . SLC22A25 387601 hgsc.bcm.edu 36 11 62752599 62752599 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_199352 exon2 c.G416T p.C139F . . . ATF7IP 55729 hgsc.bcm.edu 36 12 14525234 14525234 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_018179 exon13 c.C3128T p.P1043L . . . OSBPL8 114882 hgsc.bcm.edu 36 12 75304145 75304145 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_020841 exon14 c.C1467T p.G489G . . . FREM2 341640 hgsc.bcm.edu 36 13 38241884 38241884 + Silent SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_207361 exon4 c.C5580T p.P1860P . . . GPC6 10082 hgsc.bcm.edu 36 13 93280695 93280695 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_005708 exon3 c.G607A p.V203M . . . MAP2K5 5607 hgsc.bcm.edu 36 15 65782794 65782794 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_145160 exon16 c.T1038A p.F346L . . . ZP2 7783 hgsc.bcm.edu 36 16 21120211 21120211 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_003460 exon14 c.G1674C p.Q558H . . . ACACA 31 hgsc.bcm.edu 36 17 32638809 32638809 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_198834 exon31 c.C3726T p.N1242N . . . TP53 7157 hgsc.bcm.edu 36 17 7518313 7518313 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001126114 exon7 c.C693T p.T231T . . . MC2R 4158 hgsc.bcm.edu 36 18 13875364 13875364 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_000529 exon2 c.A154G p.N52D . . . KIR3DL3 115653 hgsc.bcm.edu 36 19 59929365 59929365 + Silent SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_153443 exon3 c.C105T p.P35P . . . NLRP4 147945 hgsc.bcm.edu 36 19 61084692 61084692 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_134444 exon10 c.C2912T p.T971M . . . ZNF552 79818 hgsc.bcm.edu 36 19 63011759 63011759 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_024762 exon3 c.C685T p.Q229X . . . ZNF121 7675 hgsc.bcm.edu 36 19 9538373 9538373 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001008727 exon4 c.C416G p.T139S . . . RASAL2 9462 hgsc.bcm.edu 36 1 176693587 176693587 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_170692 exon14 c.G2537A p.R846Q . . . SMG7 9887 hgsc.bcm.edu 36 1 181786836 181786836 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001174061 exon21 c.C3212A p.A1071E . . . CACNA1S 779 hgsc.bcm.edu 36 1 199312717 199312717 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_000069 exon12 c.G1781A p.R594H . . . FOXRED2 80020 hgsc.bcm.edu 36 22 35222008 35222008 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001102371 exon7 c.T1576C p.S526P . . . DPP10 57628 hgsc.bcm.edu 36 2 116265154 116265154 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001178036 exon19 c.T1409C p.M470T . . . LPIN1 23175 hgsc.bcm.edu 36 2 11878057 11878057 + Silent SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_145693 exon19 c.C2479T p.L827L . . . TPO 7173 hgsc.bcm.edu 36 2 1476778 1476778 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_175721 exon10 c.C1966G p.L656V . . . MARCH7 64844 hgsc.bcm.edu 36 2 160327733 160327733 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_022826 exon8 c.C1990G p.P664A . . . SDPR 8436 hgsc.bcm.edu 36 2 192409547 192409547 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_004657 exon2 c.C625T p.P209S . . . FN1 2335 hgsc.bcm.edu 36 2 215982686 215982686 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_212476 exon15 c.C2144T p.T715M . . . C2orf44 80304 hgsc.bcm.edu 36 2 24114828 24114828 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_025203 exon2 c.T1041A p.F347L . . . STON1-GTF2A1L 286749 hgsc.bcm.edu 36 2 48727407 48727407 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_006872 exon6 c.T700C p.C234R . . . CCDC88A 55704 hgsc.bcm.edu 36 2 55415053 55415053 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001135597 exon15 c.T2408A p.L803Q . . . RNF103 7844 hgsc.bcm.edu 36 2 86701033 86701033 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001198952 exon2 c.C297T p.T99T . . . SNRNP200 23020 hgsc.bcm.edu 36 2 96308088 96308088 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_014014 exon38 c.C5412T p.I1804I . . . SLC6A11 6538 hgsc.bcm.edu 36 3 10954978 10954978 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_014229 exon14 c.C1789T p.R597W . . . TRIM42 287015 hgsc.bcm.edu 36 3 141884615 141884615 + Silent SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_152616 exon2 c.C963T p.H321H . . . FNDC3B 64778 hgsc.bcm.edu 36 3 173535555 173535555 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001135095 exon15 c.G1769C p.S590T . . . EIF2B5 8893 hgsc.bcm.edu 36 3 185342459 185342459 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_003907 exon8 c.G1209A p.A403A . . . RFC4 5984 hgsc.bcm.edu 36 3 187990851 187990851 + Silent SNP G G C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_002916 exon9 c.C840G p.A280A . . . QRFPR 84109 hgsc.bcm.edu 36 4 122473462 122473462 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_198179 exon4 c.G761A p.R254Q . . . FAT4 79633 hgsc.bcm.edu 36 4 126590844 126590844 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_024582 exon9 c.G9223C p.V3075L . . . FGA 2243 hgsc.bcm.edu 36 4 155727183 155727183 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_021871 exon5 c.C848T p.T283M . . . CCDC111 201973 hgsc.bcm.edu 36 4 185849848 185849848 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_152683 exon13 c.T1413A p.F471L . . . NFXL1 152518 hgsc.bcm.edu 36 4 47602083 47602083 + Silent SNP A A G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_152995 exon4 c.T444C p.Y148Y . . . EVC2 132884 hgsc.bcm.edu 36 4 5741823 5741823 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001166136 exon5 c.C428T p.S143L . . . STBD1 8987 hgsc.bcm.edu 36 4 77450044 77450044 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_003943 exon2 c.C944T p.A315V . . . SLCO6A1 133482 hgsc.bcm.edu 36 5 101843899 101843899 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_173488 exon2 c.G497A p.G166E . . . APC 324 hgsc.bcm.edu 36 5 112203247 112203247 + Nonsense_Mutation SNP G G T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001127511 exon14 c.G4003T p.E1335X APC,large_intestine,right,Substitution - Nonsense,0 . . DMXL1 1657 hgsc.bcm.edu 36 5 118510921 118510921 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_005509 exon17 c.T2768A p.L923Q . . . SNX2 6643 hgsc.bcm.edu 36 5 122193197 122193197 + Silent SNP A A T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_003100 exon15 c.A1515T p.I505I . . . SLC22A5 6584 hgsc.bcm.edu 36 5 131750702 131750702 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_003060 exon5 c.A911G p.N304S . . . ZNF454 285676 hgsc.bcm.edu 36 5 178325442 178325442 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_182594 exon5 c.T1431A p.F477L . . . IQGAP2 10788 hgsc.bcm.edu 36 5 76008818 76008818 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_006633 exon28 c.T3547G p.C1183G . . . GRM1 2911 hgsc.bcm.edu 36 6 146762213 146762213 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001114329 exon8 c.A2345T p.N782I . . . SMOC2 64094 hgsc.bcm.edu 36 6 168741468 168741468 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001166412 exon8 c.A683T p.K228M . . . OR2H1 26716 hgsc.bcm.edu 36 6 29537884 29537884 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_030883 exon3 c.G359A p.R120Q . . . NOTCH4 4855 hgsc.bcm.edu 36 6 32271230 32271230 + Nonsense_Mutation SNP C C A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_004557 exon30 c.C5974T p.L1992F . . . TAPBP 6892 hgsc.bcm.edu 36 6 33379730 33379730 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_172208 exon7 c.A1315G p.T439A . . . TRERF1 55809 hgsc.bcm.edu 36 6 42308544 42308544 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_033502 exon17 c.C3131A p.T1044N . . . MDN1 23195 hgsc.bcm.edu 36 6 90434519 90434519 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_014611 exon84 c.G14029A p.G4677R . . . CHRM2 1129 hgsc.bcm.edu 36 7 136350671 136350671 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_000739 exon4 c.T519A p.D173E . . . CHRM2 1129 hgsc.bcm.edu 36 7 136350677 136350677 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_000739 exon4 c.G525A p.E175E . . . ATP6V0A4 50617 hgsc.bcm.edu 36 7 138074881 138074881 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_130840 exon14 c.G1516T p.D506Y . . . ZNF498 221785 hgsc.bcm.edu 36 7 99065023 99065023 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_145115 exon8 c.G1079C p.S360T . . . TMEM71 137835 hgsc.bcm.edu 36 8 133795617 133795617 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001145153 exon7 c.G590A p.S197N . . . COMMD5 28991 hgsc.bcm.edu 36 8 146046869 146046869 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001081004 exon2 c.G659A p.R220H . . . TOX 9760 hgsc.bcm.edu 36 8 59883364 59883364 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_014729 exon8 c.G1411A p.D471N . . . DDX58 23586 hgsc.bcm.edu 36 9 32447312 32447312 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_014314 exon18 c.A2586G p.I862M . . . CCL21 6366 hgsc.bcm.edu 36 9 34699648 34699648 + Silent SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_002989 exon3 c.C220T p.L74L . . . RGAG1 57529 hgsc.bcm.edu 36 X 109583529 109583529 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_020769 exon3 c.G3028A p.V1010M . . . DOCK11 139818 hgsc.bcm.edu 36 X 117579465 117579465 + Nonsense_Mutation SNP C C A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_144658 exon7 c.C650A p.S217X . . . L1CAM 3897 hgsc.bcm.edu 36 X 152787334 152787334 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001143963 exon11 c.C1407A p.F469L . . . MSN 4478 hgsc.bcm.edu 36 X 64867772 64867772 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_002444 exon5 c.G546A p.M182I . . . NONO 4841 hgsc.bcm.edu 36 X 70434480 70434480 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001145410 exon7 c.G831C p.Q277H . . . ITM2A 9452 hgsc.bcm.edu 36 X 78504760 78504760 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_004867 exon4 c.C526G p.L176V . . . TBX22 50945 hgsc.bcm.edu 36 X 79167863 79167863 + Silent SNP C C A novel unknown TCGA-AG-3593-01A-01W-0831-10 TCGA-AG-3593-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 027b7b82-7529-46fb-bb00-85671db59968 d65bd3d4-a33f-4b54-b8c2-25e1990e9c9c NM_001109878 exon5 c.C564A p.T188T . . .