Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PYROXD2	84795	hgsc.bcm.edu	36	10	100134763	100134763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_032709	exon15	c.G1606A	p.V536M	.	.	.
BTRC	8945	hgsc.bcm.edu	36	10	103284558	103284558	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_003939	exon9	c.T1140G	p.I380M	.	.	.
ADD3	120	hgsc.bcm.edu	36	10	111866084	111866084	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_019903	exon4	c.C412T	p.R138C	.	.	.
EBF3	253738	hgsc.bcm.edu	36	10	131536702	131536702	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001005463	exon11	c.C1045T	p.Q349X	.	.	.
HYOU1	10525	hgsc.bcm.edu	36	11	118425746	118425746	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_006389	exon15	c.T1679C	p.F560S	.	.	.
RAG1	5896	hgsc.bcm.edu	36	11	36553525	36553525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_000448	exon2	c.C2095T	p.R699W	.	.	.
OR5W2	390148	hgsc.bcm.edu	36	11	55438142	55438142	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001001960	exon1	c.C493T	p.R165C	.	.	.
ANO4	121601	hgsc.bcm.edu	36	12	100044975	100044975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_178826	exon26	c.C2759T	p.P920L	.	.	.
UBE3B	89910	hgsc.bcm.edu	36	12	108408673	108408673	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_130466	exon6	c.C357T	p.S119S	.	.	.
FBXO21	23014	hgsc.bcm.edu	36	12	116080245	116080245	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_015002	exon10	c.G1333A	p.D445N	.	.	.
DHX37	57647	hgsc.bcm.edu	36	12	124007312	124007312	+	Silent	SNP	T	T	C	rs10773127	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_032656	exon18	c.A2331G	p.T777T	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
CAPRIN2	65981	hgsc.bcm.edu	36	12	30779339	30779339	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001002259	exon4	c.G639T	p.K213N	.	.	.
NUP107	57122	hgsc.bcm.edu	36	12	67421912	67421913	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_020401	exon27	c.2555_2556del	p.852_852del	.	.	.
SPG20	23111	hgsc.bcm.edu	36	13	35776766	35776766	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001142295	exon9	c.C1737T	p.Y579Y	.	.	.
PCNX	22990	hgsc.bcm.edu	36	14	70515022	70515022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_014982	exon6	c.C2215T	p.R739W	.	.	.
VPS13C	54832	hgsc.bcm.edu	36	15	60114496	60114496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_017684	exon4	c.G235A	p.V79I	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	69977765	69977765	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_006901	exon25	c.A4133G	p.N1378S	.	.	.
ITGAL	3683	hgsc.bcm.edu	36	16	30414969	30414969	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001114380	exon12	c.C1305T	p.L435L	.	.	.
SMPD3	55512	hgsc.bcm.edu	36	16	66962473	66962473	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_018667	exon3	c.C1113T	p.A371A	.	.	.
GAST	2520	hgsc.bcm.edu	36	17	37125628	37125628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_000805	exon3	c.G284A	p.R95H	.	.	.
USP6	9098	hgsc.bcm.edu	36	17	4999575	4999575	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_004505	exon23	c.G2778A	p.W926X	.	.	.
OR7C1	26664	hgsc.bcm.edu	36	19	14771361	14771361	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_198944	exon1	c.C588T	p.N196N	.	.	.
ZNF347	84671	hgsc.bcm.edu	36	19	58343797	58343797	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001172675	exon4	c.C223A	p.Q75K	.	.	.
BCL9	607	hgsc.bcm.edu	36	1	145558434	145558434	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_004326	exon8	c.C1849T	p.R617X	.	.	.
C1orf77	26097	hgsc.bcm.edu	36	1	151884235	151884235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_015607	exon6	c.G613A	p.A205T	.	.	.
TNN	63923	hgsc.bcm.edu	36	1	173382803	173382803	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_022093	exon19	c.G3873A	p.T1291T	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184322995	184322995	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_031935	exon59	c.C9070T	p.R3024W	.	.	.
C8A	731	hgsc.bcm.edu	36	1	57119860	57119860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_000562	exon5	c.C619T	p.R207W	.	.	.
DNMT3B	1789	hgsc.bcm.edu	36	20	30836294	30836294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_175848	exon4	c.C274T	p.R92W	.	.	.
DOK5	55816	hgsc.bcm.edu	36	20	52693488	52693488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_018431	exon7	c.C820T	p.R274W	.	.	.
CCDC138	165055	hgsc.bcm.edu	36	2	108829630	108829630	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_144978	exon12	c.C1328T	p.S443L	.	.	.
DNER	92737	hgsc.bcm.edu	36	2	230164610	230164610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_139072	exon2	c.C515T	p.T172M	.	.	.
GCKR	2646	hgsc.bcm.edu	36	2	27584110	27584110	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001486	exon14	c.C1202T	p.T401M	.	.	.
MAP4K3	8491	hgsc.bcm.edu	36	2	39424097	39424097	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_003618	exon4	c.G246A	p.R82R	.	.	.
EPAS1	2034	hgsc.bcm.edu	36	2	46457277	46457277	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001430	exon9	c.G1130A	p.S377N	.	.	.
ARHGAP25	9938	hgsc.bcm.edu	36	2	68903284	68903284	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001166276	exon9	c.C1488T	p.Y496Y	.	.	.
ATP6V1B1	525	hgsc.bcm.edu	36	2	71038776	71038776	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001692	exon3	c.T267G	p.I89M	.	.	.
AGA	175	hgsc.bcm.edu	36	4	178589940	178589941	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001171988	exon9	c.926_927del	p.309_309del	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202761	112202761	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001127511	exon14	c.C3517T	p.Q1173X	 APC,breast,NS,Substitution - Nonsense,0 	.	.
PCDHA13	56136	hgsc.bcm.edu	36	5	140243136	140243136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_031865	exon1	c.G1099A	p.A367T	.	.	.
OSMR	9180	hgsc.bcm.edu	36	5	38940284	38940284	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_003999	exon9	c.C1207T	p.R403X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112164874	112164874	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	.	.	.	.	.	.	.
TSEPA	387357	hgsc.bcm.edu	36	6	128176168	128176168	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001010923	exon4	c.G1311T	p.V437V	.	.	.
IRF4	3662	hgsc.bcm.edu	36	6	346501	346501	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001195286	exon7	c.C820T	p.R274W	.	.	.
CUL7	9820	hgsc.bcm.edu	36	6	43118576	43118576	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_014780	exon19	c.C3587T	p.A1196V	.	.	.
CD2AP	23607	hgsc.bcm.edu	36	6	47630454	47630454	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_012120	exon5	c.C534T	p.D178D	.	.	.
EXOC4	60412	hgsc.bcm.edu	36	7	132815412	132815412	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001037126	exon9	c.G1397C	p.S466T	.	.	.
HTR5A	3361	hgsc.bcm.edu	36	7	154493996	154493996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_024012	exon1	c.C454T	p.R152C	.	.	.
DDX56	54606	hgsc.bcm.edu	36	7	44577698	44577698	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_019082	exon6	c.C808T	p.R270W	.	.	.
RB1CC1	9821	hgsc.bcm.edu	36	8	53731528	53731528	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001083617	exon15	c.C3414T	p.S1138S	.	.	.
ATP6V1H	51606	hgsc.bcm.edu	36	8	54870845	54870845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_015941	exon9	c.G785A	p.R262H	.	.	.
TRIM55	84675	hgsc.bcm.edu	36	8	67228914	67228914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_184085	exon9	c.C1315T	p.P439S	.	.	.
DLC1	10395	hgsc.bcm.edu	36	8	12993197	12993197	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	.	.	.	.	.	.	.
FMR1	2332	hgsc.bcm.edu	36	X	146832519	146832519	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001185082	exon13	c.C1389T	p.R463R	.	.	.
PTCHD1	139411	hgsc.bcm.edu	36	X	23321254	23321254	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_173495	exon3	c.C1698T	p.Y566Y	.	.	.
FAM47B	170062	hgsc.bcm.edu	36	X	34872463	34872463	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_152631	exon1	c.C1594T	p.R532C	.	.	.
RBM10	8241	hgsc.bcm.edu	36	X	46917480	46917480	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_005676	exon5	c.C442T	p.Q148X	.	.	.
SSX5	6758	hgsc.bcm.edu	36	X	47934532	47934532	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_175723	exon6	c.G447C	p.E149D	.	.	.
APEX2	27301	hgsc.bcm.edu	36	X	55050212	55050212	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_014481	exon6	c.C1176T	p.N392N	.	.	.
FAM133A	286499	hgsc.bcm.edu	36	X	92851499	92851499	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce45b9fe-f42b-4933-8d06-31cb8a528f9d	ba86e5b4-dd24-4497-8df7-aab5cb75c5db	NM_001171110	exon5	c.C425T	p.S142F	.	.	.