Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target GBF1 8729 hgsc.bcm.edu 36 10 104111542 104111542 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001199378 exon14 c.G1569A p.L523L . . . OGDHL 55753 hgsc.bcm.edu 36 10 50616059 50616059 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001143996 exon18 c.C2286T p.S762S . . . HELLS 3070 hgsc.bcm.edu 36 10 96343335 96343335 + Silent SNP T T C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_018063 exon18 c.T2061C p.D687D . . . BCL9L 283149 hgsc.bcm.edu 36 11 118277903 118277903 + Nonsense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_182557 exon6 c.C1759T p.Q587X . . . PRDM11 56981 hgsc.bcm.edu 36 11 45202541 45202541 + Missense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_020229 exon8 c.G1042A p.E348K . . . P2RX7 5027 hgsc.bcm.edu 36 12 120088351 120088351 + Missense_Mutation SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_002562 exon7 c.A722G p.N241S . . . KRAS 3845 hgsc.bcm.edu 36 12 25289548 25289548 + Missense_Mutation SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_004985 exon2 c.G38A p.G13D KRAS,lung,NS,Substitution - Missense,-1 . . TPH2 121278 hgsc.bcm.edu 36 12 70711738 70711738 + Missense_Mutation SNP T T C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_173353 exon11 c.T1469C p.I490T . . . ANO4 121601 hgsc.bcm.edu 36 12 99955055 99955055 + Missense_Mutation SNP A A C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_178826 exon9 c.A788C p.H263P . . . SGCG 6445 hgsc.bcm.edu 36 13 22767602 22767602 + Missense_Mutation SNP G G T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_000231 exon6 c.G554T p.R185I . . . UBR1 197131 hgsc.bcm.edu 36 15 41095247 41095247 + Missense_Mutation SNP G G C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_174916 exon29 c.C3140G p.T1047S . . . LBXCOR1 390598 hgsc.bcm.edu 36 15 65909634 65909634 + Missense_Mutation SNP A A T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001031807 exon5 c.A2327T p.K776I . . . CDH8 1006 hgsc.bcm.edu 36 16 60412386 60412386 + Missense_Mutation SNP A A T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001796 exon6 c.T968A p.L323H . . . SF3B3 23450 hgsc.bcm.edu 36 16 69156661 69156661 + Missense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_012426 exon19 c.G2656A p.E886K . . . KRT20 54474 hgsc.bcm.edu 36 17 36292400 36292400 + Silent SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_019010 exon2 c.T423C p.C141C . . . TP53 7157 hgsc.bcm.edu 36 17 7518937 7518937 + Nonsense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001126114 exon6 c.C637T p.R213X TP53,central_nervous_system,brain,Substitution - Missense,+1 . . DNMT1 1786 hgsc.bcm.edu 36 19 10152152 10152152 + Missense_Mutation SNP G G C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001130823 exon4 c.C319G p.L107V . . . CALR 811 hgsc.bcm.edu 36 19 12912137 12912137 + Silent SNP G G C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_004343 exon5 c.G573C p.V191V . . . SIN3B 23309 hgsc.bcm.edu 36 19 16823243 16823243 + Silent SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_015260 exon6 c.C747T p.C249C . . . ZNF569 148266 hgsc.bcm.edu 36 19 42596445 42596445 + Missense_Mutation SNP C C A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_152484 exon6 c.G955T p.V319F . . . SIGLEC12 89858 hgsc.bcm.edu 36 19 56696479 56696479 + Missense_Mutation SNP G G T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_053003 exon1 c.C321A p.S107R . . . ZNF160 90338 hgsc.bcm.edu 36 19 58263449 58263449 + Missense_Mutation SNP C C G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_198893 exon7 c.G2150C p.R717P . . . NLRP4 147945 hgsc.bcm.edu 36 19 61062320 61062320 + Silent SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_134444 exon3 c.C1749T p.N583N . . . GPR89A 653519 hgsc.bcm.edu 36 1 144476738 144476738 + Silent SNP T T C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001097613 exon14 c.A1074G p.L358L . . . SLC9A11 284525 hgsc.bcm.edu 36 1 171772788 171772788 + Missense_Mutation SNP T T G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_178527 exon14 c.A1571C p.K524T . . . PAX7 5081 hgsc.bcm.edu 36 1 18890904 18890904 + Missense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_013945 exon5 c.G650A p.R217H . . . PLA2G5 5322 hgsc.bcm.edu 36 1 20288956 20288956 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_000929 exon4 c.G273A p.A91A . . . SLC26A9 115019 hgsc.bcm.edu 36 1 204163289 204163289 + Missense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_134325 exon10 c.C1169T p.A390V . . . PIK3R3 8503 hgsc.bcm.edu 36 1 46284177 46284177 + Missense_Mutation SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_003629 exon9 c.T1187C p.V396A . . . LPPR4 9890 hgsc.bcm.edu 36 1 99544116 99544116 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_014839 exon7 c.G1254A p.P418P . . . DIDO1 11083 hgsc.bcm.edu 36 20 61012957 61012957 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_022105 exon3 c.C453T p.T151T . . . ATP6V1E2 90423 hgsc.bcm.edu 36 2 46592945 46592945 + Missense_Mutation SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_080653 exon2 c.G410A p.R137Q . . . SLC9A10 285335 hgsc.bcm.edu 36 3 113432910 113432910 + Missense_Mutation SNP C C G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_183061 exon13 c.G1560C p.L520F . . . SLC7A14 57709 hgsc.bcm.edu 36 3 171681126 171681126 + Missense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_020949 exon7 c.C1639T p.R547W . . . NLGN1 22871 hgsc.bcm.edu 36 3 175481776 175481776 + Missense_Mutation SNP A A T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_014932 exon7 c.A2461T p.T821S . . . MYRIP 25924 hgsc.bcm.edu 36 3 40250436 40250436 + Missense_Mutation SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_015460 exon12 c.C1988T p.S663F . . . CYP8B1 1582 hgsc.bcm.edu 36 3 42891267 42891267 + Missense_Mutation SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_004391 exon1 c.G1046A p.R349Q . . . TGM4 7047 hgsc.bcm.edu 36 3 44918365 44918365 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_003241 exon8 c.G909A p.T303T . . . COL7A1 1294 hgsc.bcm.edu 36 3 48583300 48583300 + Missense_Mutation SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_000094 exon94 c.C7270T p.R2424W . . . PDLIM5 10611 hgsc.bcm.edu 36 4 95725906 95725906 + Missense_Mutation SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001011513 exon6 c.A551G p.E184G . . . PSD2 84249 hgsc.bcm.edu 36 5 139173166 139173166 + Nonsense_Mutation SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_032289 exon3 c.C460T p.Q154X . . . FBXO38 81545 hgsc.bcm.edu 36 5 147800932 147800932 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_205836 exon21 c.G3327A p.R1109R . . . GZMK 3003 hgsc.bcm.edu 36 5 54365356 54365356 + Missense_Mutation SNP T T A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_002104 exon5 c.T640A p.S214T . . . PEX3 8504 hgsc.bcm.edu 36 6 143833852 143833852 + Silent SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_003630 exon5 c.C393T p.V131V . . . DCDC2 51473 hgsc.bcm.edu 36 6 24386359 24386359 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001195610 exon8 c.C819T p.P273P . . . IFRD1 3475 hgsc.bcm.edu 36 7 111899511 111899511 + Missense_Mutation SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001550 exon10 c.A1043G p.E348G . . . PPP1R3A 5506 hgsc.bcm.edu 36 7 113309556 113309556 + Missense_Mutation SNP T T C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_002711 exon2 c.A838G p.T280A . . . FAM71F1 84691 hgsc.bcm.edu 36 7 128146325 128146325 + Silent SNP G G A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_032599 exon3 c.G639A p.T213T . . . NOM1 64434 hgsc.bcm.edu 36 7 156447624 156447624 + Missense_Mutation SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_138400 exon5 c.A1651G p.T551A . . . TRIM73 375593 hgsc.bcm.edu 36 7 74870951 74870951 + Nonsense_Mutation SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_198924 exon3 c.C487T p.R163X . . . C7orf51 222950 hgsc.bcm.edu 36 7 99923803 99923803 + Missense_Mutation SNP T T C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_173564 exon4 c.T523C p.S175P . . . ENPP2 5168 hgsc.bcm.edu 36 8 120650667 120650667 + Missense_Mutation SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001130863 exon22 c.T2117C p.L706P . . . TRPA1 8989 hgsc.bcm.edu 36 8 73131805 73131805 + Silent SNP A A C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_007332 exon10 c.T1095G p.G365G . . . MMP16 4325 hgsc.bcm.edu 36 8 89249111 89249111 + Silent SNP T T C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_005941 exon4 c.A612G p.G204G . . . ASTN2 23245 hgsc.bcm.edu 36 9 118422501 118422501 + Missense_Mutation SNP T T C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_198186 exon3 c.A418G p.K140E . . . TAF1L 138474 hgsc.bcm.edu 36 9 32620351 32620351 + Missense_Mutation SNP C C A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_153809 exon1 c.G5227T p.D1743Y . . . WNK3 65267 hgsc.bcm.edu 36 X 54241715 54241716 + Frame_Shift_Ins INS - - T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001002838 exon23 c.4999_5000insA p.L1667fs . . . ODZ1 10178 hgsc.bcm.edu 36 X 123523295 123523295 + Missense_Mutation SNP C C A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_014253 exon14 c.G2341T p.G781C . . . SMARCA1 6594 hgsc.bcm.edu 36 X 128461422 128461422 + Missense_Mutation SNP A A C novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_003069 exon10 c.T1245G p.I415M . . . CNKSR2 22866 hgsc.bcm.edu 36 X 21444610 21444610 + Missense_Mutation SNP C C G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_001168647 exon9 c.C897G p.S299R . . . RBM10 8241 hgsc.bcm.edu 36 X 46929485 46929485 + Nonsense_Mutation SNP C C T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_005676 exon18 c.C2038T p.R680X . . . RBM3 5935 hgsc.bcm.edu 36 X 48319924 48319924 + Missense_Mutation SNP A A T novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_006743 exon5 c.A401T p.D134V . . . HUWE1 10075 hgsc.bcm.edu 36 X 53659488 53659488 + Missense_Mutation SNP T T A novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_031407 exon22 c.A1991T p.D664V . . . CYLC1 1538 hgsc.bcm.edu 36 X 83015638 83015638 + Silent SNP A A G novel unknown TCGA-AF-2689-01A-01W-0831-10 TCGA-AF-2689-10A-01W-0831-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8d3fb086-a5f4-4044-95bf-23595663672e 05c78132-6673-4e34-a7cb-d90f30cf1de2 NM_021118 exon4 c.A1266G p.E422E . . .