Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ADAM18 8749 broad.mit.edu 36 8 39625039 39625040 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_014237 exon12 c.1066_1067insT p.I356fs . . . RP1 6101 broad.mit.edu 36 8 55700864 55700865 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_006269 exon4 c.1869_1870insA p.D623fs . . . CNGB3 54714 broad.mit.edu 36 8 87657393 87657394 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_019098 exon18 c.2185_2186insA p.E729fs . . . C19orf44 84167 broad.mit.edu 36 19 16472755 16472756 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032207 exon2 c.152_153insA p.L51fs . . . C1orf85 112770 broad.mit.edu 36 1 154532024 154532025 + Frame_Shift_Ins INS - C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_144580 exon1 c.37_38insG p.H13fs . . . C1orf114 57821 broad.mit.edu 36 1 167631039 167631040 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_021179 exon6 c.1397_1398insA p.M466fs . . . WDR64 128025 broad.mit.edu 36 1 240031077 240031078 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_144625 exon27 c.3183_3184insA p.L1061fs . . . CSMD2 114784 broad.mit.edu 36 1 33821832 33821833 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_052896 exon48 c.7243_7244insT p.D2415_G2416delinsX . . . SOBP 55084 broad.mit.edu 36 6 108062391 108062392 + Frame_Shift_Ins INS - C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_018013 exon6 c.1650_1651insC p.K550fs . . . SYNE1 23345 broad.mit.edu 36 6 152758391 152758392 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_182961 exon51 c.7665_7666insA p.N2555fs . . . DLAT 1737 broad.mit.edu 36 11 111402186 111402187 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001931 exon2 c.334_335insA p.E112fs . . . RHOT1 55288 broad.mit.edu 36 17 27553912 27553913 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001033566 exon15 c.1212_1213insA p.D404fs . . . MRPL45 84311 broad.mit.edu 36 17 33707978 33707979 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032351 exon2 c.111_112insA p.T37fs . . . PVRL3 25945 broad.mit.edu 36 3 112335254 112335255 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_015480 exon6 c.1152_1153insA p.P384fs . . . MFSD1 64747 broad.mit.edu 36 3 160004808 160004809 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_022736 exon2 c.317_318insT p.Y106fs . . . LRRIQ1 84125 broad.mit.edu 36 12 84071645 84071646 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001079910 exon22 c.4615_4616insA p.E1539fs . . . UFSP2 55325 broad.mit.edu 36 4 186561642 186561643 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_018359 exon11 c.1323_1324insA p.K441fs . . . CCDC110 256309 broad.mit.edu 36 4 186617203 186617204 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001145411 exon5 c.1421_1422insA p.I474fs . . . NBAS 51594 broad.mit.edu 36 2 15535806 15535807 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_015909 exon13 c.1142_1143insA p.I381fs . . . AOX1 316 broad.mit.edu 36 2 201185653 201185654 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001159 exon14 c.1340_1341insA p.V447fs . . . SMEK2 57223 broad.mit.edu 36 2 55679454 55679455 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001122964 exon4 c.523_524insA p.L175fs . . . ARPC5L 81873 broad.mit.edu 36 9 126679038 126679039 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_030978 exon4 c.460_461insA p.X154delinsX . . . CPXM2 119587 broad.mit.edu 36 10 125629795 125629796 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_198148 exon2 c.325_326insA p.V109fs . . . LMNB1 4001 broad.mit.edu 36 5 126168472 126168473 + Frame_Shift_Ins INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_005573 exon2 c.465_466insA p.D155fs . . . SLC35B3 51000 broad.mit.edu 36 6 8375087 8375088 + Frame_Shift_Ins INS - T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina . . . . . . . EFHA1 221154 broad.mit.edu 36 13 20967459 20967460 + Splice_Site INS - A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina . . . . . . . ZAN 7455 broad.mit.edu 36 7 100172129 100172129 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173059 exon4 c.G194A p.R65Q . . . ZAN 7455 broad.mit.edu 36 7 100203498 100203498 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173059 exon26 c.C4969T p.R1657C . . . ZAN 7455 broad.mit.edu 36 7 100204214 100204214 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173059 exon27 c.G5087T p.R1696I . . . EPHB4 2050 broad.mit.edu 36 7 100239103 100239103 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004444 exon17 c.A2880C p.K960N . . . EPHB4 2050 broad.mit.edu 36 7 100249242 100249242 + Missense_Mutation SNP G A A rs60537976 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004444 exon10 c.C1724T p.S575L . . . ACHE 43 broad.mit.edu 36 7 100327941 100327941 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000665 exon3 c.A1503C p.K501N . . . MUC17 140453 broad.mit.edu 36 7 100463936 100463936 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040105 exon3 c.C2519A p.S840Y . . . MUC17 140453 broad.mit.edu 36 7 100464113 100464113 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040105 exon3 c.C2696A p.S899Y . . . MUC17 140453 broad.mit.edu 36 7 100465252 100465252 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040105 exon3 c.C3835A p.L1279I . . . MUC17 140453 broad.mit.edu 36 7 100467665 100467665 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040105 exon3 c.C6248T p.S2083L . . . TRIM56 81844 broad.mit.edu 36 7 100519257 100519257 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030961 exon3 c.C1944T p.F648F . . . SERPINE1 5054 broad.mit.edu 36 7 100558617 100558617 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000602 exon2 c.G223A p.G75R . . . SERPINE1 5054 broad.mit.edu 36 7 100563794 100563794 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000602 exon5 c.G799T p.E267X . . . EMID2 136227 broad.mit.edu 36 7 100850017 100850017 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133457 exon2 c.C198T p.C66C . . . MYL10 93408 broad.mit.edu 36 7 101052184 101052184 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138403 exon5 c.G366T p.K122N . . . CUX1 1523 broad.mit.edu 36 7 101711890 101711890 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181500 exon21 c.C1854T p.I618I . . . FBXL13 222235 broad.mit.edu 36 7 102306105 102306105 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111038 exon15 c.C1417A p.L473I . . . LRRC17 10234 broad.mit.edu 36 7 102372168 102372168 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031692 exon4 c.A1204C p.K402Q . . . NAPEPLD 222236 broad.mit.edu 36 7 102547705 102547705 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198990 exon3 c.C496T p.R166C . . . SLC26A5 375611 broad.mit.edu 36 7 102825635 102825635 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206884 exon9 c.C951T p.V317V . . . SLC26A5 375611 broad.mit.edu 36 7 102848458 102848458 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206884 exon4 c.C255A p.V85V . . . RELN 5649 broad.mit.edu 36 7 102938642 102938642 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005045 exon51 c.C8166A p.F2722L . . . RELN 5649 broad.mit.edu 36 7 102970539 102970539 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005045 exon43 c.C6546A p.F2182L . . . RELN 5649 broad.mit.edu 36 7 102981474 102981474 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005045 exon39 c.C5838T p.I1946I . . . RELN 5649 broad.mit.edu 36 7 102985659 102985659 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005045 exon37 c.T5603G p.F1868C . . . RELN 5649 broad.mit.edu 36 7 102989634 102989634 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005045 exon35 c.C5213A p.S1738Y . . . RELN 5649 broad.mit.edu 36 7 102992992 102992992 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005045 exon34 c.C5179T p.R1727W . . . RELN 5649 broad.mit.edu 36 7 102994328 102994328 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005045 exon32 c.C4703T p.A1568V . . . RELN 5649 broad.mit.edu 36 7 103017383 103017383 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005045 exon28 c.C4041T p.C1347C . . . RELN 5649 broad.mit.edu 36 7 103080325 103080325 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005045 exon14 c.T1672C p.F558L . . . LHFPL3 375612 broad.mit.edu 36 7 103756571 103756571 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199000 exon1 c.C108T p.I36I . . . MLL5 55904 broad.mit.edu 36 7 104505000 104505000 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182931 exon11 c.G1014T p.K338N . . . MLL5 55904 broad.mit.edu 36 7 104533591 104533591 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182931 exon19 c.G2501T p.R834I . . . MLL5 55904 broad.mit.edu 36 7 104534369 104534369 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182931 exon20 c.G2761T p.E921X . . . MLL5 55904 broad.mit.edu 36 7 104534856 104534856 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182931 exon21 c.C2855A p.S952Y . . . MLL5 55904 broad.mit.edu 36 7 104535186 104535186 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182931 exon22 c.G3046T p.E1016X . . . MLL5 55904 broad.mit.edu 36 7 104535439 104535439 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182931 exon22 c.G3299A p.R1100Q . . . MLL5 55904 broad.mit.edu 36 7 104538034 104538034 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182931 exon24 c.G3827A p.R1276Q . . . SRPK2 6733 broad.mit.edu 36 7 104631314 104631314 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182691 exon2 c.A193G p.K65E . . . SRPK2 6733 broad.mit.edu 36 7 104696509 104696509 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182691 exon1 c.G18T p.E6D . . . PUS7 54517 broad.mit.edu 36 7 104893021 104893021 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019042 exon13 c.C1602T p.F534F . . . PUS7 54517 broad.mit.edu 36 7 104919228 104919228 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019042 exon7 c.T915G p.V305V . . . RINT1 60561 broad.mit.edu 36 7 104982779 104982779 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021930 exon11 c.G1540T p.D514Y . . . CDHR3 222256 broad.mit.edu 36 7 105458511 105458511 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152750 exon18 c.C2342T p.A781V . . . PIK3CG 5294 broad.mit.edu 36 7 106295957 106295957 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002649 exon2 c.G715A p.D239N . . . PIK3CG 5294 broad.mit.edu 36 7 106300246 106300246 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002649 exon3 c.G2024A p.S675N . . . PIK3CG 5294 broad.mit.edu 36 7 106313838 106313838 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002649 exon10 c.C2895T p.F965F . . . HBP1 26959 broad.mit.edu 36 7 106610148 106610148 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012257 exon3 c.A264C p.R88S . . . HBP1 26959 broad.mit.edu 36 7 106617952 106617952 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012257 exon8 c.G1021A p.D341N . . . COG5 10466 broad.mit.edu 36 7 106840278 106840278 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161520 exon7 c.G667T p.E223X . . . GPR22 2845 broad.mit.edu 36 7 106902092 106902092 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005295 exon3 c.C351T p.F117F . . . SLC26A4 5172 broad.mit.edu 36 7 107091081 107091081 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000441 exon3 c.C269T p.S90L . . . SLC26A4 5172 broad.mit.edu 36 7 107123618 107123618 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000441 exon13 c.T1442G p.I481S . . . CBLL1 79872 broad.mit.edu 36 7 107176666 107176666 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024814 exon2 c.C119T p.P40L . . . CBLL1 79872 broad.mit.edu 36 7 107181098 107181098 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024814 exon3 c.T188G p.F63C . . . SLC26A3 1811 broad.mit.edu 36 7 107218761 107218761 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000111 exon5 c.G538A p.A180T . . . LAMB4 22798 broad.mit.edu 36 7 107483413 107483413 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007356 exon25 c.G3655T p.D1219Y . . . LAMB4 22798 broad.mit.edu 36 7 107493585 107493585 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007356 exon21 c.C2694A p.Y898X . . . LAMB4 22798 broad.mit.edu 36 7 107530771 107530771 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007356 exon10 c.C1134T p.F378F . . . PNPLA8 50640 broad.mit.edu 36 7 107907031 107907031 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015723 exon11 c.C1907T p.S636L . . . PNPLA8 50640 broad.mit.edu 36 7 107930196 107930196 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015723 exon6 c.C1333A p.L445I . . . DNAJB9 4189 broad.mit.edu 36 7 107999513 107999513 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012328 exon2 c.C107T p.S36L . . . DNAJB9 4189 broad.mit.edu 36 7 108000945 108000945 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012328 exon3 c.G584T p.R195I . . . NDUFA4 4697 broad.mit.edu 36 7 10944994 10944994 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002489 exon2 c.C97A p.L33I . . . PHF14 9678 broad.mit.edu 36 7 11029075 11029075 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014660 exon6 c.G1261T p.D421Y . . . LRRN3 54674 broad.mit.edu 36 7 110551951 110551951 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018334 exon2 c.T1887G p.L629L . . . DOCK4 9732 broad.mit.edu 36 7 111174602 111174602 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014705 exon42 c.T4523G p.V1508G . . . DOCK4 9732 broad.mit.edu 36 7 111295440 111295440 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014705 exon22 c.G2116T p.E706X . . . DOCK4 9732 broad.mit.edu 36 7 111416442 111416442 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014705 exon6 c.G328A p.D110N . . . IFRD1 3475 broad.mit.edu 36 7 111889338 111889338 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001550 exon7 c.C665A p.S222Y . . . IFRD1 3475 broad.mit.edu 36 7 111900072 111900072 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001550 exon11 c.C1186T p.R396X . . . TMEM168 64418 broad.mit.edu 36 7 112202574 112202574 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022484 exon3 c.C1164T p.I388I . . . TMEM168 64418 broad.mit.edu 36 7 112212106 112212106 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022484 exon2 c.C11A p.S4X . . . PPP1R3A 5506 broad.mit.edu 36 7 113306771 113306771 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002711 exon4 c.T1612G p.L538V . . . FOXP2 93986 broad.mit.edu 36 7 114091603 114091603 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014491 exon16 c.C1879T p.P627S . . . THSD7A 221981 broad.mit.edu 36 7 11430901 11430901 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015204 exon15 c.C3330A p.T1110T . . . CAPZA2 830 broad.mit.edu 36 7 116315459 116315459 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006136 exon2 c.G82T p.E28X . . . CAPZA2 830 broad.mit.edu 36 7 116343371 116343371 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006136 exon9 c.G679T p.E227X . . . ASZ1 136991 broad.mit.edu 36 7 116810289 116810289 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130768 exon7 c.G799T p.D267Y . . . CFTR 1080 broad.mit.edu 36 7 116975977 116975977 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000492 exon10 c.G1256T p.R419I . . . CFTR 1080 broad.mit.edu 36 7 117015105 117015105 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000492 exon12 c.C1661A p.A554E . . . CFTR 1080 broad.mit.edu 36 7 117037911 117037911 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000492 exon19 c.G3091A p.A1031T . . . CFTR 1080 broad.mit.edu 36 7 117069817 117069817 + Silent SNP C T T rs1800129 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000492 exon23 c.C3807T p.I1269I . . . CTTNBP2 83992 broad.mit.edu 36 7 117152516 117152516 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033427 exon18 c.G4087A p.A1363T . . . CTTNBP2 83992 broad.mit.edu 36 7 117155418 117155418 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033427 exon17 c.C4016A p.S1339Y . . . CTTNBP2 83992 broad.mit.edu 36 7 117205012 117205012 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033427 exon8 c.T2567C p.V856A . . . CTTNBP2 83992 broad.mit.edu 36 7 117218587 117218587 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033427 exon4 c.G1899A p.T633T . . . CTTNBP2 83992 broad.mit.edu 36 7 117219621 117219621 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033427 exon4 c.C865T p.R289C . . . ANKRD7 56311 broad.mit.edu 36 7 117664135 117664135 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019644 exon5 c.C631A p.L211I . . . C7orf58 79974 broad.mit.edu 36 7 120527335 120527335 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024913 exon7 c.C869T p.S290L . . . C7orf58 79974 broad.mit.edu 36 7 120569382 120569382 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024913 exon16 c.G2006A p.R669H . . . C7orf58 79974 broad.mit.edu 36 7 120664098 120664098 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024913 exon17 c.G2150T p.R717I . . . PTPRZ1 5803 broad.mit.edu 36 7 121438884 121438884 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002851 exon12 c.G2548A p.E850K . . . PTPRZ1 5803 broad.mit.edu 36 7 121439860 121439860 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002851 exon12 c.C3524A p.S1175Y . . . PTPRZ1 5803 broad.mit.edu 36 7 121481265 121481265 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002851 exon26 c.C6318A p.F2106L . . . AASS 10157 broad.mit.edu 36 7 121520351 121520351 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005763 exon16 c.G1753T p.E585X . . . FEZF1 389549 broad.mit.edu 36 7 121730955 121730955 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001024613 exon1 c.A773C p.K258T . . . CADPS2 93664 broad.mit.edu 36 7 121772929 121772929 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001167940 exon28 c.C3559T p.R1187W . . . CADPS2 93664 broad.mit.edu 36 7 121834940 121834940 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001167940 exon20 c.T2648G p.F883C . . . RNF148 378925 broad.mit.edu 36 7 122129313 122129313 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_198085 exon1 c.T728C p.V243A . . . RNF148 378925 broad.mit.edu 36 7 122130027 122130027 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198085 exon1 c.G14T p.R5I . . . TAS2R16 50833 broad.mit.edu 36 7 122422411 122422411 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016945 exon1 c.A514C p.N172H . . . TAS2R16 50833 broad.mit.edu 36 7 122422579 122422579 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016945 exon1 c.C346A p.L116I . . . SLC13A1 6561 broad.mit.edu 36 7 122556229 122556229 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022444 exon10 c.G1039T p.E347X . . . SLC13A1 6561 broad.mit.edu 36 7 122599103 122599103 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022444 exon3 c.G320T p.R107I . . . SLC13A1 6561 broad.mit.edu 36 7 122627232 122627232 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022444 exon1 c.A5C p.K2T . . . IQUB 154865 broad.mit.edu 36 7 122924143 122924143 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178827 exon7 c.G1077A p.E359E . . . LMOD2 442721 broad.mit.edu 36 7 123083301 123083301 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207163 exon1 c.C48T p.I16I . . . LMOD2 442721 broad.mit.edu 36 7 123089718 123089718 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207163 exon2 c.C842T p.T281M . . . WASL 8976 broad.mit.edu 36 7 123123939 123123939 + Nonsense_Mutation SNP C A A rs3209159 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003941 exon6 c.G559T p.E187X . . . WASL 8976 broad.mit.edu 36 7 123133611 123133611 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003941 exon4 c.G392A p.R131Q . . . HYAL4 23553 broad.mit.edu 36 7 123295617 123295617 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012269 exon3 c.T54A p.H18Q . . . HYAL4 23553 broad.mit.edu 36 7 123296289 123296289 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012269 exon3 c.C726A p.V242V . . . SPAM1 6677 broad.mit.edu 36 7 123382311 123382311 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174044 exon4 c.G979A p.E327K . . . SPAM1 6677 broad.mit.edu 36 7 123386833 123386833 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174044 exon5 c.C1104T p.N368N . . . GRM8 2918 broad.mit.edu 36 7 125960814 125960814 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127323 exon9 c.G1858A p.E620K . . . SCIN 85477 broad.mit.edu 36 7 12631926 12631926 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001112706 exon7 c.C907T p.P303S . . . GRM8 2918 broad.mit.edu 36 7 126329961 126329961 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001127323 exon6 c.C1027T p.R343X . . . GRM8 2918 broad.mit.edu 36 7 126533856 126533856 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127323 exon3 c.G657A p.S219S . . . ZNF800 168850 broad.mit.edu 36 7 126813356 126813356 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176814 exon3 c.C151T p.R51X . . . GCC1 79571 broad.mit.edu 36 7 127011545 127011545 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024523 exon1 c.C928T p.R310X . . . PAX4 5078 broad.mit.edu 36 7 127040745 127040745 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006193 exon5 c.G616A p.V206M . . . PAX4 5078 broad.mit.edu 36 7 127041794 127041794 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006193 exon3 c.G390A p.P130P . . . SND1 27044 broad.mit.edu 36 7 127332051 127332051 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014390 exon14 c.C1470T p.G490G . . . LRRC4 64101 broad.mit.edu 36 7 127456714 127456714 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022143 exon2 c.G1216A p.D406N . . . LEP 3952 broad.mit.edu 36 7 127681950 127681950 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000230 exon3 c.C402T p.V134V . . . METTL2B 55798 broad.mit.edu 36 7 127906545 127906545 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018396 exon3 c.C300A p.F100L . . . FAM71F2 346653 broad.mit.edu 36 7 128102961 128102961 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001012454 exon2 c.C177A p.F59L . . . FAM71F2 346653 broad.mit.edu 36 7 128104930 128104930 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012454 exon3 c.G442A p.E148K . . . CALU 813 broad.mit.edu 36 7 128181660 128181660 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001219 exon3 c.G330T p.E110D . . . CCDC136 64753 broad.mit.edu 36 7 128228526 128228526 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022742 exon4 c.G397T p.E133X . . . CCDC136 64753 broad.mit.edu 36 7 128239198 128239198 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022742 exon13 c.C2137T p.R713W . . . FLNC 2318 broad.mit.edu 36 7 128270792 128270792 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001458 exon18 c.C2736T p.G912G . . . FLNC 2318 broad.mit.edu 36 7 128280033 128280033 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001458 exon36 c.C5995A p.R1999R . . . AHCYL2 23382 broad.mit.edu 36 7 128827406 128827406 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015328 exon6 c.A863G p.D288G . . . AHCYL2 23382 broad.mit.edu 36 7 128832251 128832251 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015328 exon8 c.T1103G p.F368C . . . NRF1 4899 broad.mit.edu 36 7 129144307 129144307 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005011 exon9 c.T1078C p.W360R . . . ZC3HC1 51530 broad.mit.edu 36 7 129445769 129445769 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016478 exon10 c.C1480T p.R494W . . . ZC3HC1 51530 broad.mit.edu 36 7 129456042 129456042 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016478 exon5 c.T557G p.F186C . . . ZC3HC1 51530 broad.mit.edu 36 7 129478418 129478418 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016478 exon1 c.G25T p.A9S . . . CPA5 93979 broad.mit.edu 36 7 129774878 129774878 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127441 exon5 c.A152C p.K51T . . . CPA5 93979 broad.mit.edu 36 7 129788259 129788259 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127441 exon8 c.G472A p.D158N . . . TSGA14 95681 broad.mit.edu 36 7 129829799 129829799 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018718 exon7 c.C500A p.P167H . . . MEST 4232 broad.mit.edu 36 7 129922585 129922585 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002402 exon2 c.G167A p.R56H . . . MEST 4232 broad.mit.edu 36 7 129926965 129926965 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002402 exon7 c.G549T p.E183D . . . TSGA13 114960 broad.mit.edu 36 7 130007147 130007147 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052933 exon7 c.C552T p.F184F . . . TSGA13 114960 broad.mit.edu 36 7 130008174 130008174 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052933 exon6 c.A470C p.K157T . . . MKLN1 4289 broad.mit.edu 36 7 130734705 130734705 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013255 exon6 c.G676A p.E226K . . . MKLN1 4289 broad.mit.edu 36 7 130798624 130798624 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013255 exon13 c.G1634T p.R545I . . . PLXNA4 91584 broad.mit.edu 36 7 131481862 131481862 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020911 exon28 c.C5002T p.R1668W . . . PLXNA4 91584 broad.mit.edu 36 7 131494904 131494904 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020911 exon25 c.G4528T p.A1510S . . . PLXNA4 91584 broad.mit.edu 36 7 131515920 131515920 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020911 exon19 c.G3604A p.E1202K . . . PLXNA4 91584 broad.mit.edu 36 7 131824630 131824630 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181775 exon4 c.T1332G p.S444S . . . PLXNA4 91584 broad.mit.edu 36 7 131842960 131842960 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181775 exon3 c.C1033T p.R345W . . . PLXNA4 91584 broad.mit.edu 36 7 131843885 131843885 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_181775 exon3 c.G108A p.K36K . . . EXOC4 60412 broad.mit.edu 36 7 132691662 132691662 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037126 exon6 c.G802T p.E268X . . . EXOC4 60412 broad.mit.edu 36 7 133332791 133332791 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021807 exon15 c.C2213A p.S738Y . . . LRGUK 136332 broad.mit.edu 36 7 133493412 133493412 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144648 exon6 c.T755G p.I252S . . . AKR1B1 231 broad.mit.edu 36 7 133782599 133782599 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001628 exon8 c.G816T p.E272D . . . CALD1 800 broad.mit.edu 36 7 134269362 134269362 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033138 exon5 c.G1302A p.K434K . . . CALD1 800 broad.mit.edu 36 7 134282919 134282919 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033157 exon8 c.C966T p.F322F . . . WDR91 29062 broad.mit.edu 36 7 134539679 134539679 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014149 exon6 c.C772T p.R258C . . . NUP205 23165 broad.mit.edu 36 7 134906419 134906419 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015135 exon2 c.G55T p.D19Y . . . SLC13A4 26266 broad.mit.edu 36 7 135041456 135041456 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012450 exon4 c.C498T p.L166L . . . CHRM2 1129 broad.mit.edu 36 7 136350357 136350357 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000739 exon4 c.G205T p.D69Y . . . CHRM2 1129 broad.mit.edu 36 7 136350909 136350909 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000739 exon4 c.G757A p.D253N . . . PTN 5764 broad.mit.edu 36 7 136563360 136563360 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002825 exon5 c.G454A p.E152K . . . DGKI 9162 broad.mit.edu 36 7 136887743 136887743 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004717 exon20 c.G2059A p.A687T . . . CREB3L2 64764 broad.mit.edu 36 7 137239281 137239281 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194071 exon7 c.G938T p.R313I . . . TRIM24 8805 broad.mit.edu 36 7 137912778 137912778 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003852 exon14 c.C2059T p.R687X . . . ATP6V0A4 50617 broad.mit.edu 36 7 138097716 138097716 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130840 exon6 c.G421A p.E141K . . . ATP6V0A4 50617 broad.mit.edu 36 7 138106516 138106516 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130840 exon2 c.G17A p.R6Q . . . KIAA1549 57670 broad.mit.edu 36 7 138216778 138216778 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164665 exon11 c.G4125A p.A1375A . . . KIAA1549 57670 broad.mit.edu 36 7 138216865 138216865 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164665 exon11 c.G4038T p.Q1346H . . . KIAA1549 57670 broad.mit.edu 36 7 138253893 138253893 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164665 exon2 c.G1019T p.R340I . . . KIAA1549 57670 broad.mit.edu 36 7 138254215 138254215 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164665 exon2 c.C697T p.R233W . . . ZC3HAV1 56829 broad.mit.edu 36 7 138383022 138383022 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020119 exon13 c.C2567T p.T856M . . . ZC3HAV1 56829 broad.mit.edu 36 7 138414871 138414871 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024625 exon4 c.C1356T p.S452S . . . ZC3HAV1 56829 broad.mit.edu 36 7 138424981 138424981 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024625 exon2 c.G373A p.E125K . . . TTC26 79989 broad.mit.edu 36 7 138470047 138470047 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144920 exon2 c.G110T p.R37I . . . TTC26 79989 broad.mit.edu 36 7 138513878 138513878 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144920 exon14 c.C1236T p.G412G . . . LUC7L2 51631 broad.mit.edu 36 7 138757537 138757537 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016019 exon10 c.C1090T p.R364W . . . ETV1 2115 broad.mit.edu 36 7 13937895 13937895 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001163147 exon8 c.C559T p.R187C . . . JHDM1D 80853 broad.mit.edu 36 7 139437391 139437391 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030647 exon20 c.G2798T p.R933I . . . SLC37A3 84255 broad.mit.edu 36 7 139689772 139689772 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207113 exon13 c.G1235A p.R412H . . . DENND2A 27147 broad.mit.edu 36 7 139893206 139893206 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015689 exon11 c.C2040A p.I680I . . . DENND2A 27147 broad.mit.edu 36 7 139913439 139913439 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015689 exon7 c.C1695T p.F565F . . . DENND2A 27147 broad.mit.edu 36 7 139931945 139931945 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015689 exon3 c.C1158T p.I386I . . . BRAF 673 broad.mit.edu 36 7 140147800 140147800 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004333 exon6 c.T741G p.F247L . . . AGK 55750 broad.mit.edu 36 7 140987541 140987541 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018238 exon12 c.T751C p.S251P . . . TAS2R4 50832 broad.mit.edu 36 7 141124764 141124764 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016944 exon1 c.C7T p.R3W . . . TAS2R4 50832 broad.mit.edu 36 7 141124865 141124865 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016944 exon1 c.C108A p.V36V . . . TAS2R5 54429 broad.mit.edu 36 7 141137290 141137290 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018980 exon1 c.G660A p.A220A . . . OR9A4 130075 broad.mit.edu 36 7 141265176 141265176 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001001656 exon1 c.T32G p.F11C . . . OR9A4 130075 broad.mit.edu 36 7 141265372 141265372 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001656 exon1 c.C228T p.I76I . . . OR9A4 130075 broad.mit.edu 36 7 141265480 141265480 + Silent SNP C T T rs73529456 by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001656 exon1 c.C336T p.F112F . . . TAS2R38 5726 broad.mit.edu 36 7 141319060 141319060 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176817 exon1 c.G899A p.G300D . . . MGAM 8972 broad.mit.edu 36 7 141351844 141351844 + Silent SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004668 exon2 c.G45C p.V15V . . . MGAM 8972 broad.mit.edu 36 7 141367338 141367338 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004668 exon5 c.C544T p.R182C . . . MGAM 8972 broad.mit.edu 36 7 141401152 141401152 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004668 exon27 c.C3289T p.R1097C . . . MGAM 8972 broad.mit.edu 36 7 141441053 141441053 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004668 exon40 c.A4691C p.E1564A . . . TRYX3 136541 broad.mit.edu 36 7 141598546 141598546 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001317 exon6 c.G699T p.W233C . . . TRPV6 55503 broad.mit.edu 36 7 142293350 142293350 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018646 exon1 c.A34G p.I12V . . . TRPV5 56302 broad.mit.edu 36 7 142315822 142315822 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019841 exon15 c.G2170T p.E724X . . . TRPV5 56302 broad.mit.edu 36 7 142316830 142316830 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019841 exon14 c.C1843T p.R615C . . . TRPV5 56302 broad.mit.edu 36 7 142332783 142332783 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019841 exon8 c.C1085A p.S362Y . . . TRPV5 56302 broad.mit.edu 36 7 142336333 142336333 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019841 exon5 c.G492T p.E164D . . . KEL 3792 broad.mit.edu 36 7 142348596 142348596 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000420 exon19 c.G2064A p.Q688Q . . . KEL 3792 broad.mit.edu 36 7 142359826 142359826 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000420 exon10 c.G1095T p.M365I . . . OR9A2 135924 broad.mit.edu 36 7 142434246 142434246 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001658 exon1 c.C96A p.F32L . . . PIP 5304 broad.mit.edu 36 7 142542494 142542494 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002652 exon2 c.G181T p.E61X . . . TAS2R40 259286 broad.mit.edu 36 7 142629347 142629347 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_176882 exon1 c.C54A p.V18V . . . CLCN1 1180 broad.mit.edu 36 7 142727912 142727912 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000083 exon3 c.G335A p.R112K . . . CLCN1 1180 broad.mit.edu 36 7 142738529 142738529 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000083 exon9 c.C1062T p.I354I . . . CLCN1 1180 broad.mit.edu 36 7 142749319 142749319 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000083 exon15 c.G1758T p.K586N . . . FAM131B 9715 broad.mit.edu 36 7 142764143 142764143 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031690 exon7 c.C705T p.S235S . . . ZYX 7791 broad.mit.edu 36 7 142790326 142790326 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003461 exon5 c.C812A p.P271H . . . EPHA1 2041 broad.mit.edu 36 7 142805590 142805590 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005232 exon7 c.C1410T p.S470S . . . TAS2R60 338398 broad.mit.edu 36 7 142850699 142850699 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_177437 exon1 c.C32T p.S11L . . . TAS2R41 259287 broad.mit.edu 36 7 142885963 142885963 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_176883 exon1 c.C876T p.S292S . . . CTAGE15P 441294 broad.mit.edu 36 7 142980258 142980258 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008747 exon1 c.G1226A p.R409Q . . . FAM115C 285966 broad.mit.edu 36 7 143048106 143048106 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130026 exon2 c.G529T p.D177Y . . . FAM115C 285966 broad.mit.edu 36 7 143052647 143052647 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130026 exon7 c.G2117T p.R706I . . . CTAGE6P 340307 broad.mit.edu 36 7 143084392 143084392 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178561 exon1 c.G1293T p.E431D . . . CTAGE6P 340307 broad.mit.edu 36 7 143084515 143084515 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178561 exon1 c.C1170A p.F390L . . . OR2F1 26211 broad.mit.edu 36 7 143288179 143288179 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012369 exon1 c.C183A p.F61L . . . OR2F1 26211 broad.mit.edu 36 7 143288701 143288701 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012369 exon1 c.G705T p.K235N . . . OR6B1 135946 broad.mit.edu 36 7 143332727 143332727 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005281 exon1 c.G705A p.A235A . . . OR2A2 442361 broad.mit.edu 36 7 143437623 143437623 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005480 exon1 c.G15T p.Q5H . . . OR2A2 442361 broad.mit.edu 36 7 143437905 143437905 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005480 exon1 c.G297T p.Q99H . . . OR2A9P 441295 broad.mit.edu 36 7 143646477 143646477 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001802 exon1 c.C309T p.S103S . . . TPK1 27010 broad.mit.edu 36 7 143919457 143919457 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022445 exon7 c.C493A p.L165I . . . TPK1 27010 broad.mit.edu 36 7 143951203 143951203 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022445 exon6 c.A343C p.K115Q . . . TPK1 27010 broad.mit.edu 36 7 144010951 144010951 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022445 exon4 c.G169A p.E57K . . . DGKB 1607 broad.mit.edu 36 7 14580432 14580432 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145695 exon19 c.C1703A p.P568H DGKB,lung,NS,Substitution - Missense,-1 . . CNTNAP2 26047 broad.mit.edu 36 7 146102401 146102401 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014141 exon2 c.G203T p.R68I . . . CNTNAP2 26047 broad.mit.edu 36 7 146460440 146460440 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014141 exon8 c.T1254C p.N418N . . . CNTNAP2 26047 broad.mit.edu 36 7 147305986 147305986 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014141 exon15 c.C2355T p.S785S . . . DGKB 1607 broad.mit.edu 36 7 14742226 14742226 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145695 exon4 c.C287A p.P96Q . . . C7orf33 202865 broad.mit.edu 36 7 147943352 147943352 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145304 exon3 c.G460A p.V154I . . . ZNF425 155054 broad.mit.edu 36 7 148432419 148432419 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001661 exon4 c.G1477A p.D493N . . . ZNF425 155054 broad.mit.edu 36 7 148433586 148433586 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001661 exon4 c.G310A p.E104K . . . ZNF398 57541 broad.mit.edu 36 7 148507657 148507657 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020781 exon7 c.G1247A p.R416H . . . ZNF282 8427 broad.mit.edu 36 7 148534822 148534822 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003575 exon3 c.G687T p.E229D . . . ZNF212 7988 broad.mit.edu 36 7 148578190 148578190 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012256 exon2 c.G32A p.R11K . . . ZNF212 7988 broad.mit.edu 36 7 148578514 148578514 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012256 exon2 c.G356A p.R119H . . . LOC155060 155060 broad.mit.edu 36 7 148594748 148594748 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001195220 exon2 c.C414T p.A138A . . . ZNF467 168544 broad.mit.edu 36 7 149098484 149098484 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207336 exon3 c.G129T p.E43D . . . SSPO 23145 broad.mit.edu 36 7 149133454 149133454 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198455 exon55 c.G8338T p.D2780Y . . . ZNF862 643641 broad.mit.edu 36 7 149188719 149188719 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099220 exon7 c.G1537T p.V513L . . . GIMAP8 155038 broad.mit.edu 36 7 149795210 149795210 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175571 exon2 c.G491A p.R164Q . . . GIMAP7 168537 broad.mit.edu 36 7 149848102 149848102 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153236 exon2 c.C107A p.S36Y . . . GIMAP7 168537 broad.mit.edu 36 7 149848393 149848393 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153236 exon2 c.G398A p.R133H . . . GIMAP5 55340 broad.mit.edu 36 7 150070832 150070832 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199577 exon6 c.C1284A p.F428L . . . TMEM176B 28959 broad.mit.edu 36 7 150122056 150122056 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001101312 exon3 c.C241A p.L81I . . . ABP1 26 broad.mit.edu 36 7 150184657 150184657 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001091 exon2 c.C166T p.L56L . . . ATG9B 285973 broad.mit.edu 36 7 150351186 150351186 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173681 exon4 c.C700T p.R234X . . . ABCB8 11194 broad.mit.edu 36 7 150363957 150363957 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007188 exon7 c.G983A p.R328H . . . ABCF2 10061 broad.mit.edu 36 7 150547151 150547151 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005692 exon8 c.C949T p.R317W . . . NUB1 51667 broad.mit.edu 36 7 150695111 150695111 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016118 exon9 c.C954T p.Y318Y . . . WDR86 349136 broad.mit.edu 36 7 150728255 150728255 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198285 exon2 c.G169A p.E57K . . . PRKAG2 51422 broad.mit.edu 36 7 150893771 150893771 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024429 exon8 c.G644A p.R215Q . . . GALNTL5 168391 broad.mit.edu 36 7 151330858 151330858 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145292 exon6 c.G785T p.R262I . . . MLL3 58508 broad.mit.edu 36 7 151504691 151504691 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170606 exon38 c.C8780T p.S2927F . . . MLL3 58508 broad.mit.edu 36 7 151505448 151505448 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170606 exon38 c.T8023G p.L2675V . . . MLL3 58508 broad.mit.edu 36 7 151511054 151511054 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170606 exon35 c.C5203T p.L1735F . . . MLL3 58508 broad.mit.edu 36 7 151515476 151515476 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170606 exon33 c.T4812G p.F1604L . . . MLL3 58508 broad.mit.edu 36 7 151576388 151576388 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170606 exon14 c.C2064A p.V688V . . . TMEM195 392636 broad.mit.edu 36 7 15393597 15393597 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004320 exon9 c.C916A p.P306T . . . TMEM195 392636 broad.mit.edu 36 7 15397050 15397050 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004320 exon7 c.A682G p.N228D . . . HTR5A 3361 broad.mit.edu 36 7 154493973 154493973 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024012 exon1 c.C431T p.T144M . . . HTR5A 3361 broad.mit.edu 36 7 154494165 154494165 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024012 exon1 c.C623T p.A208V . . . RBM33 155435 broad.mit.edu 36 7 155230464 155230464 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_053043 exon14 c.G2386T p.E796X . . . NOM1 64434 broad.mit.edu 36 7 156436077 156436077 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138400 exon1 c.G885T p.K295N . . . NOM1 64434 broad.mit.edu 36 7 156438037 156438037 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_138400 exon2 c.A1096C p.K366Q . . . UBE3C 9690 broad.mit.edu 36 7 156692938 156692938 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014671 exon12 c.C1504A p.L502I . . . PTPRN2 5799 broad.mit.edu 36 7 157034455 157034455 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130843 exon21 c.C2835T p.I945I . . . PTPRN2 5799 broad.mit.edu 36 7 157619144 157619144 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_130843 exon9 c.C1542T p.I514I . . . VIPR2 7434 broad.mit.edu 36 7 158528562 158528562 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003382 exon6 c.C522A p.I174I . . . ISPD 729920 broad.mit.edu 36 7 16314759 16314759 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001101417 exon3 c.G553A p.E185K . . . BZW2 28969 broad.mit.edu 36 7 16680578 16680578 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014038 exon3 c.C75T p.F25F . . . BZW2 28969 broad.mit.edu 36 7 16712215 16712215 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014038 exon12 c.G1237A p.E413K . . . AHR 196 broad.mit.edu 36 7 17336164 17336164 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001621 exon5 c.C514T p.R172C . . . AHR 196 broad.mit.edu 36 7 17346183 17346183 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001621 exon10 c.G2209T p.D737Y . . . SNX13 23161 broad.mit.edu 36 7 17820987 17820987 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015132 exon20 c.C2059T p.R687C . . . SNX13 23161 broad.mit.edu 36 7 17846111 17846111 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015132 exon13 c.C1203A p.F401L . . . HDAC9 9734 broad.mit.edu 36 7 18597761 18597761 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178423 exon5 c.C504T p.S168S . . . TWISTNB 221830 broad.mit.edu 36 7 19704548 19704548 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001002926 exon4 c.G933T p.K311N . . . TWISTNB 221830 broad.mit.edu 36 7 19710960 19710960 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001002926 exon2 c.T363G p.V121V . . . MACC1 346389 broad.mit.edu 36 7 20166240 20166240 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182762 exon5 c.G269T p.R90I . . . ITGB8 3696 broad.mit.edu 36 7 20408049 20408049 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002214 exon10 c.G1462T p.D488Y . . . ABCB5 340273 broad.mit.edu 36 7 20653779 20653779 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001163941 exon10 c.T1078G p.F360V . . . ABCB5 340273 broad.mit.edu 36 7 20656215 20656215 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001163941 exon12 c.G1252A p.A418T . . . ABCB5 340273 broad.mit.edu 36 7 20704583 20704583 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178559 exon8 c.A704C p.K235T . . . ABCB5 340273 broad.mit.edu 36 7 20751437 20751437 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178559 exon17 c.G1945T p.A649S . . . DNAH11 8701 broad.mit.edu 36 7 21595355 21595355 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon12 c.T1978G p.L660V . . . DNAH11 8701 broad.mit.edu 36 7 21607189 21607189 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon17 c.A3292G p.K1098E . . . DNAH11 8701 broad.mit.edu 36 7 21607591 21607591 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon18 c.G3478T p.E1160X . . . DNAH11 8701 broad.mit.edu 36 7 21612685 21612685 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon19 c.C3765T p.D1255D . . . DNAH11 8701 broad.mit.edu 36 7 21621368 21621368 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon21 c.G3964T p.E1322X . . . DNAH11 8701 broad.mit.edu 36 7 21687728 21687728 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon31 c.G5383A p.E1795K . . . DNAH11 8701 broad.mit.edu 36 7 21693333 21693333 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon33 c.G5735T p.R1912I . . . DNAH11 8701 broad.mit.edu 36 7 21693596 21693596 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon34 c.C5872A p.L1958I . . . DNAH11 8701 broad.mit.edu 36 7 21696918 21696918 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon35 c.C5957A p.S1986Y . . . DNAH11 8701 broad.mit.edu 36 7 21779935 21779935 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon56 c.T9151G p.F3051V . . . DNAH11 8701 broad.mit.edu 36 7 21824418 21824418 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon65 c.C10649A p.S3550Y . . . DNAH11 8701 broad.mit.edu 36 7 21858645 21858645 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003777 exon67 c.T10954G p.X3652G . . . CDCA7L 55536 broad.mit.edu 36 7 21912516 21912516 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127371 exon5 c.G699T p.E233D . . . CDCA7L 55536 broad.mit.edu 36 7 21914435 21914435 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127371 exon3 c.G381T p.Q127H . . . NUDT1 4521 broad.mit.edu 36 7 2256087 2256087 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198949 exon4 c.C291T p.F97F . . . IL6 3569 broad.mit.edu 36 7 22733752 22733752 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000600 exon2 c.G184A p.D62N . . . FAM126A 84668 broad.mit.edu 36 7 22967402 22967402 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032581 exon9 c.G808T p.E270X . . . KLHL7 55975 broad.mit.edu 36 7 23158280 23158280 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031710 exon7 c.G863T p.R288I . . . GPNMB 10457 broad.mit.edu 36 7 23266251 23266251 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005340 exon5 c.C669T p.I223I . . . C7orf30 115416 broad.mit.edu 36 7 23315555 23315555 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138446 exon4 c.G573T p.E191D . . . IGF2BP3 10643 broad.mit.edu 36 7 23352185 23352185 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006547 exon8 c.G840T p.K280N . . . IGF2BP3 10643 broad.mit.edu 36 7 23353852 23353852 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006547 exon7 c.C710T p.A237V . . . C7orf46 340277 broad.mit.edu 36 7 23690705 23690705 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199136 exon2 c.G128T p.R43I . . . STK31 56164 broad.mit.edu 36 7 23778417 23778417 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001122833 exon15 c.G1891A p.E631K . . . EIF3B 8662 broad.mit.edu 36 7 2377958 2377958 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003751 exon11 c.A1635C p.E545D . . . CHST12 55501 broad.mit.edu 36 7 2439844 2439844 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018641 exon2 c.C1044T p.D348D . . . OSBPL3 26031 broad.mit.edu 36 7 24858733 24858733 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145321 exon11 c.G1073T p.R358I . . . NFE2L3 9603 broad.mit.edu 36 7 26184154 26184154 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004289 exon2 c.G637T p.E213X . . . HOXA2 3199 broad.mit.edu 36 7 27107295 27107295 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006735 exon2 c.G706A p.A236T . . . HOXA2 3199 broad.mit.edu 36 7 27108510 27108510 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006735 exon1 c.G135A p.S45S . . . HOXA3 3200 broad.mit.edu 36 7 27114124 27114124 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030661 exon3 c.G1267A p.D423N . . . HOXA3 3200 broad.mit.edu 36 7 27114683 27114683 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030661 exon3 c.G708T p.K236N . . . HOXA6 3203 broad.mit.edu 36 7 27151950 27151950 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024014 exon2 c.G554A p.R185H . . . HOXA13 3209 broad.mit.edu 36 7 27204503 27204503 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000522 exon2 c.G1006T p.E336X . . . TAX1BP1 8887 broad.mit.edu 36 7 27775844 27775844 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006024 exon5 c.G478T p.E160X . . . TAX1BP1 8887 broad.mit.edu 36 7 27791445 27791445 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006024 exon6 c.G751A p.E251K . . . TAX1BP1 8887 broad.mit.edu 36 7 27798272 27798272 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006024 exon9 c.G1161A p.T387T . . . TAX1BP1 8887 broad.mit.edu 36 7 27802313 27802313 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006024 exon12 c.G1588T p.E530X . . . TAX1BP1 8887 broad.mit.edu 36 7 27823136 27823136 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006024 exon15 c.G2039A p.R680Q . . . CREB5 9586 broad.mit.edu 36 7 28494335 28494335 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182898 exon2 c.G21T p.K7N . . . CREB5 9586 broad.mit.edu 36 7 28513878 28513878 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004904 exon4 c.C268T p.R90W . . . CREB5 9586 broad.mit.edu 36 7 28692339 28692339 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001011666 exon1 c.G47T p.R16M . . . CPVL 54504 broad.mit.edu 36 7 29036833 29036833 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031311 exon12 c.G1205A p.G402D . . . WIPF3 644150 broad.mit.edu 36 7 29882008 29882008 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080529 exon2 c.C128T p.P43L . . . FKBP14 55033 broad.mit.edu 36 7 30025211 30025211 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017946 exon3 c.C403T p.R135X . . . PLEKHA8 84725 broad.mit.edu 36 7 30058907 30058907 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001197027 exon7 c.G696T p.E232D . . . PLEKHA8 84725 broad.mit.edu 36 7 30060979 30060979 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001197027 exon8 c.C926A p.P309Q . . . NOD1 10392 broad.mit.edu 36 7 30458855 30458855 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006092 exon6 c.C703T p.R235C . . . CRHR2 1395 broad.mit.edu 36 7 30659641 30659641 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001883 exon12 c.G1196A p.R399Q . . . CRHR2 1395 broad.mit.edu 36 7 30661213 30661213 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001883 exon11 c.C1062T p.F354F . . . INMT 11185 broad.mit.edu 36 7 30759894 30759894 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006774 exon2 c.G177T p.L59L . . . INMT 11185 broad.mit.edu 36 7 30760023 30760023 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006774 exon2 c.G306A p.P102P . . . ADCYAP1R1 117 broad.mit.edu 36 7 31090309 31090309 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199636 exon7 c.G357A p.T119T . . . CCDC129 223075 broad.mit.edu 36 7 31584147 31584147 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_194300 exon8 c.G744T p.E248D . . . CCDC129 223075 broad.mit.edu 36 7 31649311 31649311 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_194300 exon11 c.G1802T p.G601V . . . CCDC129 223075 broad.mit.edu 36 7 31658081 31658081 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_194300 exon13 c.G2715T p.E905D . . . PDE1C 5137 broad.mit.edu 36 7 31829304 31829304 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001191056 exon14 c.C1490A p.S497Y . . . AVL9 23080 broad.mit.edu 36 7 32558429 32558429 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015060 exon6 c.C526A p.L176I . . . KBTBD2 25948 broad.mit.edu 36 7 32876476 32876476 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015483 exon4 c.A878G p.E293G . . . FKBP9 11328 broad.mit.edu 36 7 33008959 33008959 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007270 exon9 c.G1519T p.E507X . . . NPSR1 387129 broad.mit.edu 36 7 34840544 34840544 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207172 exon6 c.G704A p.R235Q . . . DPY19L1 23333 broad.mit.edu 36 7 34951818 34951818 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015283 exon16 c.A1311T p.Q437H . . . DPY19L1 23333 broad.mit.edu 36 7 34956003 34956003 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015283 exon14 c.C1134A p.F378L . . . HERPUD2 64224 broad.mit.edu 36 7 35679408 35679408 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022373 exon3 c.G153A p.T51T . . . EEPD1 80820 broad.mit.edu 36 7 36160683 36160683 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030636 exon2 c.G225T p.K75N . . . KIAA0895 23366 broad.mit.edu 36 7 36340280 36340280 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100425 exon5 c.G1016A p.R339Q . . . KIAA0895 23366 broad.mit.edu 36 7 36363201 36363201 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100425 exon3 c.G702T p.K234N . . . KIAA0895 23366 broad.mit.edu 36 7 36363608 36363608 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100425 exon3 c.G295T p.D99Y . . . ANLN 54443 broad.mit.edu 36 7 36445354 36445354 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018685 exon21 c.C2900A p.S967Y . . . AOAH 313 broad.mit.edu 36 7 36638184 36638184 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001637 exon6 c.C504A p.I168I . . . ELMO1 9844 broad.mit.edu 36 7 36884188 36884188 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039459 exon4 c.G334A p.E112K . . . TARP 445347 broad.mit.edu 36 7 38271500 38271500 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001003806 exon2 c.A120C p.E40D . . . AMPH 273 broad.mit.edu 36 7 38400197 38400197 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139316 exon17 c.C1415A p.T472N . . . POU6F2 11281 broad.mit.edu 36 7 39092155 39092155 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007252 exon3 c.C189T p.F63F . . . POU6F2 11281 broad.mit.edu 36 7 39345782 39345782 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007252 exon6 c.C528A p.N176K . . . SDK1 221935 broad.mit.edu 36 7 3968894 3968894 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152744 exon9 c.C1314T p.L438L . . . RALA 5898 broad.mit.edu 36 7 39712274 39712274 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005402 exon5 c.C526T p.R176X . . . SDK1 221935 broad.mit.edu 36 7 3973494 3973494 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152744 exon10 c.C1448T p.T483I . . . SDK1 221935 broad.mit.edu 36 7 4119465 4119465 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152744 exon24 c.G3453T p.V1151V . . . SDK1 221935 broad.mit.edu 36 7 4136165 4136165 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152744 exon27 c.G4039A p.V1347M . . . INHBA 3624 broad.mit.edu 36 7 41696190 41696190 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002192 exon3 c.G864A p.S288S . . . INHBA 3624 broad.mit.edu 36 7 41696404 41696404 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002192 exon3 c.C650T p.T217I . . . GLI3 2737 broad.mit.edu 36 7 41971550 41971550 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000168 exon15 c.C3646A p.L1216I . . . GLI3 2737 broad.mit.edu 36 7 41983736 41983736 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000168 exon12 c.T1758G p.A586A . . . GLI3 2737 broad.mit.edu 36 7 42046353 42046353 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000168 exon7 c.C837A p.F279L . . . C7orf25 79020 broad.mit.edu 36 7 42916299 42916299 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024054 exon2 c.C726A p.V242V . . . HECW1 23072 broad.mit.edu 36 7 43506895 43506895 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015052 exon20 c.C3510A p.V1170V . . . HECW1 23072 broad.mit.edu 36 7 43515123 43515123 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015052 exon24 c.C3897A p.F1299L . . . HECW1 23072 broad.mit.edu 36 7 43547350 43547350 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015052 exon25 c.C4083T p.F1361F . . . HECW1 23072 broad.mit.edu 36 7 43548015 43548015 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015052 exon26 c.G4141T p.E1381X . . . STK17A 9263 broad.mit.edu 36 7 43629983 43629983 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004760 exon6 c.C891A p.F297L . . . URGCP 55665 broad.mit.edu 36 7 43883959 43883959 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001077664 exon6 c.A1499G p.D500G . . . SPDYE1 285955 broad.mit.edu 36 7 44007180 44007180 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175064 exon1 c.C31A p.L11I . . . PGAM2 5224 broad.mit.edu 36 7 44071312 44071312 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000290 exon1 c.C342A p.I114I . . . AEBP1 165 broad.mit.edu 36 7 44119794 44119794 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001129 exon21 c.G2886A p.P962P . . . MYL7 58498 broad.mit.edu 36 7 44147127 44147127 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021223 exon2 c.C75A p.V25V . . . GCK 2645 broad.mit.edu 36 7 44165240 44165240 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033507 exon1 c.C5T p.A2V . . . YKT6 10652 broad.mit.edu 36 7 44214296 44214296 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006555 exon5 c.G433A p.E145K . . . DDX56 54606 broad.mit.edu 36 7 44578853 44578853 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019082 exon4 c.G399T p.E133D . . . H2AFV 94239 broad.mit.edu 36 7 44841682 44841682 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201517 exon3 c.C182A p.S61Y . . . PURB 5814 broad.mit.edu 36 7 44890728 44890728 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033224 exon1 c.G745A p.E249K . . . ADCY1 107 broad.mit.edu 36 7 45628852 45628852 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021116 exon4 c.C1005T p.F335F . . . TNS3 64759 broad.mit.edu 36 7 47309112 47309112 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022748 exon22 c.G3418A p.D1140N . . . FOXK1 221937 broad.mit.edu 36 7 4747043 4747043 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037165 exon2 c.G609A p.S203S . . . C7orf65 401335 broad.mit.edu 36 7 47665074 47665074 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001123065 exon3 c.A179C p.K60T . . . PKD1L1 168507 broad.mit.edu 36 7 47814410 47814410 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138295 exon52 c.G7787A p.R2596Q . . . PKD1L1 168507 broad.mit.edu 36 7 47853023 47853023 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138295 exon32 c.C5132A p.S1711Y . . . PKD1L1 168507 broad.mit.edu 36 7 47892173 47892173 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138295 exon18 c.C2841A p.P947P . . . PKD1L1 168507 broad.mit.edu 36 7 47900080 47900080 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138295 exon15 c.C2373A p.F791L . . . PKD1L1 168507 broad.mit.edu 36 7 47910639 47910639 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138295 exon12 c.T1792C p.S598P . . . PKD1L1 168507 broad.mit.edu 36 7 47914248 47914248 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138295 exon9 c.C1353T p.V451V . . . PKD1L1 168507 broad.mit.edu 36 7 47935326 47935326 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138295 exon7 c.G1060T p.G354C . . . ABCA13 154664 broad.mit.edu 36 7 48229581 48229581 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon2 c.A209C p.K70T . . . ABCA13 154664 broad.mit.edu 36 7 48251113 48251113 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon8 c.C1003A p.P335T . . . ABCA13 154664 broad.mit.edu 36 7 48251179 48251179 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon8 c.G1069A p.A357T . . . ABCA13 154664 broad.mit.edu 36 7 48256082 48256082 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon11 c.G1405A p.A469T . . . ABCA13 154664 broad.mit.edu 36 7 48282507 48282507 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon15 c.A2535C p.X845Y . . . ABCA13 154664 broad.mit.edu 36 7 48283797 48283797 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon15 c.G3825T p.K1275N . . . ABCA13 154664 broad.mit.edu 36 7 48284701 48284701 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon15 c.G4729T p.V1577L . . . ABCA13 154664 broad.mit.edu 36 7 48285445 48285445 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon15 c.G5473A p.E1825K . . . ABCA13 154664 broad.mit.edu 36 7 48285940 48285940 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon15 c.G5968T p.V1990F . . . RADIL 55698 broad.mit.edu 36 7 4838325 4838325 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018059 exon5 c.A1427C p.K476T . . . ABCA13 154664 broad.mit.edu 36 7 48402172 48402172 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon36 c.G11600A p.R3867H . . . ABCA13 154664 broad.mit.edu 36 7 48422555 48422555 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon39 c.G12125T p.R4042I . . . ABCA13 154664 broad.mit.edu 36 7 48518028 48518028 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon48 c.G13198A p.V4400I . . . ABCA13 154664 broad.mit.edu 36 7 48534521 48534521 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon52 c.G14020A p.D4674N . . . ABCA13 154664 broad.mit.edu 36 7 48597338 48597338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon55 c.G14385A p.T4795T . . . ABCA13 154664 broad.mit.edu 36 7 48604955 48604955 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152701 exon56 c.G14581A p.A4861T . . . PAPOLB 56903 broad.mit.edu 36 7 4866194 4866194 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020144 exon1 c.G1774A p.E592K . . . PAPOLB 56903 broad.mit.edu 36 7 4867809 4867809 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020144 exon1 c.C159T p.F53F . . . COBL 23242 broad.mit.edu 36 7 51120463 51120463 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015198 exon7 c.G990T p.K330N . . . TNRC18 84629 broad.mit.edu 36 7 5363416 5363416 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080495 exon16 c.G4851T p.K1617N . . . VSTM2A 222008 broad.mit.edu 36 7 54585047 54585047 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182546 exon4 c.C324A p.I108I . . . EGFR 1956 broad.mit.edu 36 7 55178591 55178591 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201282 exon3 c.G340A p.E114K . . . LANCL2 55915 broad.mit.edu 36 7 55466494 55466494 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018697 exon9 c.C1340T p.S447L . . . VOPP1 81552 broad.mit.edu 36 7 55508065 55508065 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030796 exon5 c.G496A p.E166K . . . SEPT14 346288 broad.mit.edu 36 7 55831265 55831265 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207366 exon10 c.C1134T p.F378F . . . SEPT14 346288 broad.mit.edu 36 7 55842381 55842381 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_207366 exon8 c.A882C p.E294D . . . ZNF713 349075 broad.mit.edu 36 7 55974410 55974410 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182633 exon4 c.T510C p.N170N . . . MRPS17 51373 broad.mit.edu 36 7 55990197 55990197 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015969 exon3 c.G225A p.K75K . . . CCT6A 908 broad.mit.edu 36 7 56093649 56093649 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009186 exon6 c.G691T p.E231X . . . ZNF479 90827 broad.mit.edu 36 7 57191610 57191610 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033273 exon5 c.G1454T p.R485I . . . RNF216 54476 broad.mit.edu 36 7 5745453 5745453 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207116 exon5 c.G930T p.K310N . . . ZNF680 340252 broad.mit.edu 36 7 63619946 63619946 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178558 exon4 c.G621T p.E207D . . . ZNF107 51427 broad.mit.edu 36 7 63804160 63804160 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013746 exon5 c.G43T p.D15Y . . . ZNF107 51427 broad.mit.edu 36 7 63804389 63804389 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001013746 exon5 c.C272T p.S91L . . . ZNF107 51427 broad.mit.edu 36 7 63805146 63805146 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001013746 exon5 c.T1029G p.L343L . . . ZNF107 51427 broad.mit.edu 36 7 63805553 63805553 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013746 exon5 c.G1436A p.R479Q . . . ZNF273 10793 broad.mit.edu 36 7 64026112 64026112 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021148 exon4 c.G971A p.G324D . . . ZNF117 51351 broad.mit.edu 36 7 64076074 64076074 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015852 exon4 c.G1310T p.R437I . . . ZNF117 51351 broad.mit.edu 36 7 64076830 64076830 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015852 exon4 c.G554T p.R185I . . . ZNF117 51351 broad.mit.edu 36 7 64076914 64076914 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015852 exon4 c.G470T p.R157I . . . ZNF117 51351 broad.mit.edu 36 7 64090051 64090051 + 5'Flank SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001007253 exon2 c.G789T p.Q263H . . . DAGLB 221955 broad.mit.edu 36 7 6416145 6416145 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139179 exon15 c.G1867A p.E623K . . . ZNF92 168374 broad.mit.edu 36 7 64502064 64502064 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152626 exon4 c.G1602T p.E534D . . . KDELR2 11014 broad.mit.edu 36 7 6480362 6480362 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006854 exon2 c.C170A p.S57X . . . ZDHHC4 55146 broad.mit.edu 36 7 6587834 6587834 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018106 exon4 c.G189A p.T63T . . . C7orf42 55069 broad.mit.edu 36 7 66047451 66047451 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017994 exon3 c.G213T p.E71D . . . ZNF12 7559 broad.mit.edu 36 7 6697480 6697480 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016265 exon5 c.C1618T p.R540W . . . RSPH10B 222967 broad.mit.edu 36 7 6764053 6764053 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173565 exon3 c.G220A p.E74K . . . C7orf28B 221960 broad.mit.edu 36 7 6818215 6818215 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198097 exon10 c.C847A p.L283I . . . WBSCR17 64409 broad.mit.edu 36 7 70518935 70518935 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022479 exon4 c.C714T p.T238T . . . WBSCR17 64409 broad.mit.edu 36 7 70780204 70780204 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022479 exon9 c.C1477A p.P493T . . . CALN1 83698 broad.mit.edu 36 7 70913315 70913315 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031468 exon6 c.C600A p.I200I . . . CALN1 83698 broad.mit.edu 36 7 71126683 71126683 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031468 exon5 c.C396T p.G132G . . . TRIM50 135892 broad.mit.edu 36 7 72370787 72370787 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178125 exon4 c.C696T p.F232F . . . BAZ1B 9031 broad.mit.edu 36 7 72545163 72545163 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032408 exon5 c.G596A p.R199Q . . . WBSCR22 114049 broad.mit.edu 36 7 72736038 72736038 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017528 exon2 c.T54C p.Y18Y . . . LAT2 7462 broad.mit.edu 36 7 73273942 73273942 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032463 exon10 c.C372T p.F124F . . . COL28A1 340267 broad.mit.edu 36 7 7379455 7379455 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037763 exon32 c.G2607T p.Q869H . . . COL28A1 340267 broad.mit.edu 36 7 7379626 7379626 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037763 exon32 c.G2436T p.E812D . . . HIP1 3092 broad.mit.edu 36 7 75006669 75006669 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005338 exon30 c.G2971T p.E991X . . . HIP1 3092 broad.mit.edu 36 7 75049346 75049346 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005338 exon6 c.G523T p.E175X . . . STYXL1 51657 broad.mit.edu 36 7 75497756 75497756 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016086 exon2 c.G22T p.E8X . . . MDH2 4191 broad.mit.edu 36 7 75527695 75527695 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005918 exon5 c.C498A p.I166I . . . SRRM3 222183 broad.mit.edu 36 7 75732059 75732059 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001110199 exon9 c.G715T p.E239X . . . MIOS 54468 broad.mit.edu 36 7 7579772 7579772 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019005 exon4 c.G1141T p.E381X . . . DTX2 113878 broad.mit.edu 36 7 75964673 75964673 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102595 exon5 c.C1093T p.R365C . . . FGL2 10875 broad.mit.edu 36 7 76664201 76664201 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006682 exon2 c.C651T p.Y217Y . . . CCDC146 57639 broad.mit.edu 36 7 76749882 76749882 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020879 exon15 c.G1992T p.M664I . . . CCDC146 57639 broad.mit.edu 36 7 76754746 76754746 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020879 exon17 c.C2331A p.I777I . . . PTPN12 5782 broad.mit.edu 36 7 77094215 77094215 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001131009 exon12 c.A893C p.K298T . . . PTPN12 5782 broad.mit.edu 36 7 77106484 77106484 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001131009 exon17 c.G1904A p.R635Q . . . RSBN1L 222194 broad.mit.edu 36 7 77203766 77203766 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198467 exon2 c.G690T p.K230N . . . RSBN1L 222194 broad.mit.edu 36 7 77217275 77217275 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198467 exon3 c.G1302T p.K434N . . . TMEM60 85025 broad.mit.edu 36 7 77261345 77261345 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032936 exon2 c.C282A p.L94L . . . PHTF2 57157 broad.mit.edu 36 7 77396573 77396573 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020432 exon9 c.T1217G p.F406C . . . PHTF2 57157 broad.mit.edu 36 7 77407451 77407451 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020432 exon11 c.G1522T p.D508Y . . . MAGI2 9863 broad.mit.edu 36 7 77723468 77723468 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012301 exon10 c.C1775A p.S592Y . . . MAGI2 9863 broad.mit.edu 36 7 77836427 77836427 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012301 exon7 c.A1085G p.Y362C . . . MAGI2 9863 broad.mit.edu 36 7 78920539 78920539 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_012301 exon1 c.A34C p.T12P . . . GNAI1 2770 broad.mit.edu 36 7 79678288 79678288 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002069 exon6 c.G658A p.A220T . . . GNAT3 346562 broad.mit.edu 36 7 79979084 79979084 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102386 exon1 c.G95T p.R32I . . . GLCCI1 113263 broad.mit.edu 36 7 8010066 8010066 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138426 exon2 c.A461G p.D154G . . . SEMA3C 10512 broad.mit.edu 36 7 80232493 80232493 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006379 exon13 c.C1357T p.R453W . . . GLCCI1 113263 broad.mit.edu 36 7 8091158 8091158 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138426 exon7 c.C1284A p.V428V . . . HGF 3082 broad.mit.edu 36 7 81174561 81174561 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000601 exon14 c.C1597T p.R533X . . . HGF 3082 broad.mit.edu 36 7 81184489 81184489 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000601 exon11 c.C1400A p.S467Y . . . HGF 3082 broad.mit.edu 36 7 81210716 81210716 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010933 exon7 c.G739A p.D247N . . . CACNA2D1 781 broad.mit.edu 36 7 81505359 81505359 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000722 exon11 c.C1008A p.G336G . . . PCLO 27445 broad.mit.edu 36 7 82227926 82227926 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon24 c.C15253T p.R5085X . . . PCLO 27445 broad.mit.edu 36 7 82383294 82383294 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon7 c.C11944T p.R3982C . . . PCLO 27445 broad.mit.edu 36 7 82418055 82418055 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon6 c.C9785A p.S3262Y . . . PCLO 27445 broad.mit.edu 36 7 82418654 82418654 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon6 c.G9186T p.Q3062H . . . PCLO 27445 broad.mit.edu 36 7 82419478 82419478 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.C8727T p.V2909V . . . PCLO 27445 broad.mit.edu 36 7 82420630 82420630 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.A7575G p.K2525K . . . PCLO 27445 broad.mit.edu 36 7 82421525 82421525 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.C6680A p.S2227Y . . . PCLO 27445 broad.mit.edu 36 7 82422053 82422053 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.C6152A p.S2051Y . . . PCLO 27445 broad.mit.edu 36 7 82422733 82422733 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.G5472T p.K1824N . . . PCLO 27445 broad.mit.edu 36 7 82423208 82423208 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.G4997A p.R1666Q . . . PCLO 27445 broad.mit.edu 36 7 82423842 82423842 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.T4363G p.L1455V . . . PCLO 27445 broad.mit.edu 36 7 82424007 82424007 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon5 c.G4198T p.E1400X . . . PCLO 27445 broad.mit.edu 36 7 82623484 82623484 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033026 exon2 c.G409T p.E137X . . . SEMA3E 9723 broad.mit.edu 36 7 82835216 82835216 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012431 exon17 c.G1950A p.G650G . . . SEMA3E 9723 broad.mit.edu 36 7 82854279 82854279 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012431 exon15 c.G1691A p.R564Q . . . SEMA3E 9723 broad.mit.edu 36 7 82873224 82873224 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012431 exon8 c.G901T p.G301X . . . SEMA3E 9723 broad.mit.edu 36 7 82933832 82933832 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012431 exon4 c.C358T p.R120W . . . SEMA3A 10371 broad.mit.edu 36 7 83430479 83430479 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006080 exon16 c.G1838A p.R613Q . . . SEMA3A 10371 broad.mit.edu 36 7 83577727 83577727 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006080 exon4 c.C448A p.P150T . . . SEMA3A 10371 broad.mit.edu 36 7 83602075 83602075 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006080 exon2 c.G241A p.D81N . . . SEMA3D 223117 broad.mit.edu 36 7 84466747 84466747 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152754 exon17 c.G2279A p.R760Q . . . SEMA3D 223117 broad.mit.edu 36 7 84565161 84565161 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152754 exon2 c.T208G p.F70V . . . KIAA1324L 222223 broad.mit.edu 36 7 86379456 86379456 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152748 exon14 c.A1536G p.E512E . . . KIAA1324L 222223 broad.mit.edu 36 7 86382061 86382061 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152748 exon12 c.G1144T p.E382X . . . KIAA1324L 222223 broad.mit.edu 36 7 86392895 86392895 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152748 exon9 c.T783C p.C261C . . . DMTF1 9988 broad.mit.edu 36 7 86649542 86649542 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142327 exon10 c.C773A p.S258Y . . . CROT 54677 broad.mit.edu 36 7 86859821 86859821 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021151 exon15 c.C1429T p.R477C . . . CROT 54677 broad.mit.edu 36 7 86859990 86859990 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021151 exon16 c.C1513T p.R505C . . . ABCB4 5244 broad.mit.edu 36 7 86873741 86873741 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018849 exon26 c.C3306T p.L1102L . . . ABCB4 5244 broad.mit.edu 36 7 86898703 86898703 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018849 exon15 c.G1846A p.E616K . . . ABCB4 5244 broad.mit.edu 36 7 86920213 86920213 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018849 exon6 c.C519A p.L173L . . . ABCB1 5243 broad.mit.edu 36 7 86971694 86971694 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000927 exon29 c.A3644G p.Q1215R . . . ABCB1 5243 broad.mit.edu 36 7 86988110 86988110 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000927 exon23 c.G2704T p.E902X . . . ABCB1 5243 broad.mit.edu 36 7 87003793 87003793 + Missense_Mutation SNP C A A rs41305517 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000927 exon21 c.G2398T p.D800Y . . . ABCB1 5243 broad.mit.edu 36 7 87021155 87021155 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000927 exon10 c.G857T p.R286I . . . SLC25A40 55972 broad.mit.edu 36 7 87314290 87314290 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018843 exon8 c.C541T p.R181X . . . DBF4 10926 broad.mit.edu 36 7 87363759 87363759 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006716 exon7 c.G632T p.R211I . . . DBF4 10926 broad.mit.edu 36 7 87374531 87374531 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006716 exon12 c.C1142A p.S381Y . . . DBF4 10926 broad.mit.edu 36 7 87375247 87375247 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006716 exon12 c.G1858T p.D620Y . . . ADAM22 53616 broad.mit.edu 36 7 87601656 87601656 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021722 exon13 c.G1154T p.R385I . . . ADAM22 53616 broad.mit.edu 36 7 87620560 87620560 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021722 exon21 c.G1770T p.W590C . . . ADAM22 53616 broad.mit.edu 36 7 87623196 87623196 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021722 exon22 c.G1846A p.E616K . . . SRI 6717 broad.mit.edu 36 7 87676632 87676632 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003130 exon6 c.G469A p.D157N . . . STEAP4 79689 broad.mit.edu 36 7 87750007 87750007 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024636 exon3 c.G869A p.R290Q . . . STEAP4 79689 broad.mit.edu 36 7 87750228 87750228 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024636 exon3 c.C648A p.F216L . . . ZNF804B 219578 broad.mit.edu 36 7 88800794 88800794 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181646 exon4 c.C562T p.R188X . . . ZNF804B 219578 broad.mit.edu 36 7 88800857 88800857 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181646 exon4 c.G625T p.D209Y . . . ZNF804B 219578 broad.mit.edu 36 7 88804149 88804149 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181646 exon4 c.C3917A p.S1306Y . . . STEAP1 26872 broad.mit.edu 36 7 89628303 89628303 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012449 exon3 c.C333A p.I111I . . . STEAP2 261729 broad.mit.edu 36 7 89692618 89692618 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152999 exon2 c.G286T p.E96X . . . C7orf63 79846 broad.mit.edu 36 7 89738803 89738803 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001160138 exon7 c.A506C p.K169T . . . C7orf63 79846 broad.mit.edu 36 7 89739067 89739067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001160138 exon8 c.C665A p.A222D . . . C7orf63 79846 broad.mit.edu 36 7 89767270 89767270 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001160138 exon17 c.G1957T p.E653X . . . C7orf63 79846 broad.mit.edu 36 7 89777406 89777406 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001160138 exon23 c.A2690C p.K897T . . . GTPBP10 85865 broad.mit.edu 36 7 89852240 89852240 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033107 exon10 c.G1000A p.E334K . . . CLDN12 9069 broad.mit.edu 36 7 89880528 89880528 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012129 exon3 c.C602A p.S201Y . . . MTERF 7978 broad.mit.edu 36 7 91340951 91340951 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006980 exon3 c.G1093T p.E365X . . . MTERF 7978 broad.mit.edu 36 7 91341266 91341266 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006980 exon3 c.C778T p.R260W . . . MTERF 7978 broad.mit.edu 36 7 91341330 91341330 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006980 exon3 c.T714G p.I238M . . . AKAP9 10142 broad.mit.edu 36 7 91469334 91469334 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_147185 exon8 c.G2167T p.E723X . . . AKAP9 10142 broad.mit.edu 36 7 91547339 91547339 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_147185 exon31 c.C7932A p.G2644G . . . AKAP9 10142 broad.mit.edu 36 7 91564881 91564881 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147185 exon42 c.C10420A p.L3474I . . . ANKIB1 54467 broad.mit.edu 36 7 91774726 91774726 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019004 exon3 c.C306A p.R102R . . . ANKIB1 54467 broad.mit.edu 36 7 91865861 91865861 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019004 exon20 c.C2932A p.H978N . . . PEX1 5189 broad.mit.edu 36 7 91966976 91966976 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000466 exon16 c.G2696T p.R899I . . . PEX1 5189 broad.mit.edu 36 7 91967051 91967051 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000466 exon16 c.G2621T p.R874I . . . C7orf64 84060 broad.mit.edu 36 7 91999690 91999690 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032120 exon3 c.C339T p.F113F . . . C7orf64 84060 broad.mit.edu 36 7 92002203 92002203 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032120 exon4 c.C1000T p.R334W . . . SAMD9 54809 broad.mit.edu 36 7 92569885 92569885 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193307 exon2 c.T3462G p.D1154E . . . SAMD9 54809 broad.mit.edu 36 7 92570428 92570428 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193307 exon2 c.C2919T p.I973I . . . SAMD9 54809 broad.mit.edu 36 7 92571242 92571242 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193307 exon2 c.C2105A p.S702Y . . . SAMD9 54809 broad.mit.edu 36 7 92571717 92571717 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001193307 exon2 c.C1630A p.L544I . . . SAMD9 54809 broad.mit.edu 36 7 92572046 92572046 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193307 exon2 c.T1301G p.I434S . . . SAMD9L 219285 broad.mit.edu 36 7 92599392 92599392 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152703 exon5 c.C3829A p.L1277I . . . SAMD9L 219285 broad.mit.edu 36 7 92599801 92599801 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152703 exon5 c.C3420T p.N1140N . . . SAMD9L 219285 broad.mit.edu 36 7 92600426 92600426 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152703 exon5 c.T2795C p.V932A . . . SAMD9L 219285 broad.mit.edu 36 7 92601945 92601945 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152703 exon5 c.C1276T p.P426S . . . SAMD9L 219285 broad.mit.edu 36 7 92602017 92602017 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152703 exon5 c.C1204A p.L402I . . . HEPACAM2 253012 broad.mit.edu 36 7 92663111 92663111 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198151 exon7 c.T1205G p.F402C . . . CALCR 799 broad.mit.edu 36 7 92928133 92928133 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001742 exon8 c.C584A p.S195Y . . . COL1A2 1278 broad.mit.edu 36 7 93879342 93879342 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000089 exon24 c.C1377T p.I459I . . . CASD1 64921 broad.mit.edu 36 7 94004975 94004975 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022900 exon9 c.C1099A p.L367I . . . CASD1 64921 broad.mit.edu 36 7 94012802 94012802 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022900 exon12 c.C1486T p.R496C . . . PPP1R9A 55607 broad.mit.edu 36 7 94377432 94377432 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001166163 exon1 c.G71A p.R24Q . . . PON3 5446 broad.mit.edu 36 7 94830083 94830083 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000940 exon7 c.C702A p.V234V . . . ASB4 51666 broad.mit.edu 36 7 94963278 94963278 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016116 exon2 c.C460A p.L154I . . . PDK4 5166 broad.mit.edu 36 7 95060055 95060055 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002612 exon4 c.G482A p.R161Q . . . DYNC1I1 1780 broad.mit.edu 36 7 95495451 95495451 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004411 exon11 c.G1049A p.R350H . . . DYNC1I1 1780 broad.mit.edu 36 7 95495568 95495568 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004411 exon11 c.C1166T p.T389M . . . SLC25A13 10165 broad.mit.edu 36 7 95637330 95637330 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014251 exon13 c.C1274T p.S425L . . . SLC25A13 10165 broad.mit.edu 36 7 95658460 95658460 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014251 exon7 c.C651A p.F217L . . . DLX5 1749 broad.mit.edu 36 7 96488170 96488170 + Silent SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005221 exon3 c.C684G p.G228G . . . DLX5 1749 broad.mit.edu 36 7 96489473 96489473 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005221 exon2 c.G500A p.R167H . . . LMTK2 22853 broad.mit.edu 36 7 97638873 97638873 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014916 exon7 c.G742A p.E248K . . . LMTK2 22853 broad.mit.edu 36 7 97661497 97661497 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014916 exon11 c.G3784A p.E1262K . . . BAIAP2L1 55971 broad.mit.edu 36 7 97787357 97787357 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018842 exon5 c.G297A p.E99E . . . TMEM130 222865 broad.mit.edu 36 7 98291658 98291658 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134451 exon3 c.G330A p.A110A . . . TRRAP 8295 broad.mit.edu 36 7 98386449 98386449 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003496 exon37 c.C5274A p.I1758I . . . TRRAP 8295 broad.mit.edu 36 7 98413881 98413881 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003496 exon55 c.C8422T p.R2808X . . . TRRAP 8295 broad.mit.edu 36 7 98414422 98414422 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003496 exon56 c.C8518T p.R2840W . . . SMURF1 57154 broad.mit.edu 36 7 98481328 98481328 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020429 exon12 c.G1263A p.P421P . . . SMURF1 57154 broad.mit.edu 36 7 98485267 98485267 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020429 exon10 c.G886T p.D296Y . . . ZNF655 79027 broad.mit.edu 36 7 99009134 99009134 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001083956 exon4 c.G1572T p.E524D . . . ZNF498 221785 broad.mit.edu 36 7 99064953 99064953 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145115 exon8 c.G1009A p.E337K . . . CYP3A7 1551 broad.mit.edu 36 7 99157860 99157860 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000765 exon3 c.C213A p.V71V . . . CYP3A7 1551 broad.mit.edu 36 7 99166686 99166686 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000765 exon2 c.T97G p.F33V . . . CYP3A43 64816 broad.mit.edu 36 7 99285108 99285108 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057096 exon7 c.C525A p.F175L . . . CYP3A43 64816 broad.mit.edu 36 7 99297283 99297283 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057096 exon11 c.G1138T p.D380Y . . . OR2AE1 81392 broad.mit.edu 36 7 99311736 99311736 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005276 exon1 c.C857A p.S286Y . . . TRIM4 89122 broad.mit.edu 36 7 99344346 99344346 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033017 exon4 c.G593T p.R198I . . . AZGP1 563 broad.mit.edu 36 7 99403930 99403930 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185 exon3 c.G397C p.A133P . . . ZSCAN21 7589 broad.mit.edu 36 7 99499580 99499580 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145914 exon4 c.C826T p.R276C . . . ZNF3 7551 broad.mit.edu 36 7 99507769 99507769 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032924 exon6 c.C274T p.R92C . . . MCM7 4176 broad.mit.edu 36 7 99528620 99528620 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182776 exon14 c.C1503A p.F501L . . . MCM7 4176 broad.mit.edu 36 7 99533291 99533291 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182776 exon8 c.C471T p.Y157Y . . . STAG3 10734 broad.mit.edu 36 7 99634451 99634451 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012447 exon14 c.C1402T p.R468C . . . STAG3 10734 broad.mit.edu 36 7 99635132 99635132 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012447 exon16 c.G1606T p.E536X . . . STAG3 10734 broad.mit.edu 36 7 99639641 99639641 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012447 exon26 c.G2762A p.R921Q . . . STAG3 10734 broad.mit.edu 36 7 99647379 99647379 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012447 exon32 c.G3541A p.E1181K . . . PILRB 29990 broad.mit.edu 36 7 99795029 99795029 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178238 exon3 c.C588T p.V196V . . . PILRA 29992 broad.mit.edu 36 7 99825548 99825548 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013439 exon3 c.C556T p.R186C . . . ZCWPW1 55063 broad.mit.edu 36 7 99836751 99836751 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017984 exon18 c.G1769T p.R590I . . . MEPCE 56257 broad.mit.edu 36 7 99868683 99868683 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001194991 exon3 c.G470T p.R157I . . . AGFG2 3268 broad.mit.edu 36 7 99985966 99985966 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006076 exon3 c.G327T p.K109N . . . ZNF337 26152 broad.mit.edu 36 20 25603992 25603994 + In_Frame_Del DEL GAG - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_015655 exon5 c.1930_1932del p.644_644del . . . SLC23A2 9962 broad.mit.edu 36 20 4828249 4828249 + Frame_Shift_Del DEL A - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_203327 exon6 c.434delT p.F145fs . . . PSMF1 9491 broad.mit.edu 36 20 1054243 1054243 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006814 exon2 c.C232T p.L78F . . . C20orf94 128710 broad.mit.edu 36 20 10551735 10551735 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009608 exon8 c.C935A p.S312Y . . . JAG1 182 broad.mit.edu 36 20 10577720 10577720 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000214 exon11 c.G1384A p.A462T . . . SNPH 9751 broad.mit.edu 36 20 1233732 1233732 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014723 exon6 c.G519A p.Q173Q . . . SPTLC3 55304 broad.mit.edu 36 20 13088674 13088674 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018327 exon11 c.G1440T p.E480D . . . ISM1 140862 broad.mit.edu 36 20 13227839 13227839 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080826 exon6 c.G1128A p.E376E . . . SEL1L2 80343 broad.mit.edu 36 20 13787926 13787926 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025229 exon18 c.C1800T p.H600H . . . SEL1L2 80343 broad.mit.edu 36 20 13794146 13794146 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025229 exon16 c.C1419A p.V473V . . . SEL1L2 80343 broad.mit.edu 36 20 13919174 13919174 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025229 exon1 c.C7T p.P3S . . . SIRPB2 284759 broad.mit.edu 36 20 1408486 1408486 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001122962 exon2 c.G310T p.E104X . . . SIRPB2 284759 broad.mit.edu 36 20 1408689 1408689 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001122962 exon2 c.G107T p.R36M . . . SIRPB1 10326 broad.mit.edu 36 20 1500399 1500399 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006065 exon3 c.C718T p.R240C . . . SIRPG 55423 broad.mit.edu 36 20 1577888 1577888 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001039508 exon2 c.A240C p.Q80H . . . SIRPG 55423 broad.mit.edu 36 20 1586306 1586306 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039508 exon1 c.C55A p.L19I . . . KIF16B 55614 broad.mit.edu 36 20 16441483 16441483 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024704 exon5 c.G434A p.R145Q . . . KIF16B 55614 broad.mit.edu 36 20 16454742 16454742 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024704 exon3 c.G226T p.E76X . . . PCSK2 5126 broad.mit.edu 36 20 17393972 17393972 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002594 exon11 c.C1204A p.L402M . . . BFSP1 631 broad.mit.edu 36 20 17422974 17422974 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001161705 exon8 c.G1368T p.E456D . . . BFSP1 631 broad.mit.edu 36 20 17453516 17453516 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161705 exon2 c.G40T p.E14X . . . DSTN 11034 broad.mit.edu 36 20 17529440 17529440 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006870 exon2 c.C61T p.R21C . . . C20orf72 92667 broad.mit.edu 36 20 17898834 17898834 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_052865 exon2 c.A332C p.K111T . . . C20orf72 92667 broad.mit.edu 36 20 17918589 17918589 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052865 exon5 c.G872A p.C291Y . . . OVOL2 58495 broad.mit.edu 36 20 17953407 17953407 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021220 exon4 c.A701G p.N234S . . . CSRP2BP 57325 broad.mit.edu 36 20 18091396 18091396 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020536 exon6 c.G1478A p.R493H . . . C20orf12 55184 broad.mit.edu 36 20 18344009 18344009 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099407 exon11 c.C1039A p.L347I . . . SIRPA 140885 broad.mit.edu 36 20 1853475 1853475 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040023 exon5 c.G1153A p.A385T . . . DTD1 92675 broad.mit.edu 36 20 18556841 18556841 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080820 exon4 c.G441A p.S147S . . . SLC24A3 57419 broad.mit.edu 36 20 19613962 19613962 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020689 exon12 c.C1281T p.D427D . . . RIN2 54453 broad.mit.edu 36 20 19903749 19903749 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018993 exon7 c.G1080A p.R360R . . . CRNKL1 51340 broad.mit.edu 36 20 19966118 19966118 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016652 exon14 c.G2228A p.R743Q . . . C20orf26 26074 broad.mit.edu 36 20 20226871 20226871 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015585 exon25 c.G3263A p.R1088Q . . . RALGAPA2 57186 broad.mit.edu 36 20 20423785 20423785 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020343 exon36 c.C5343A p.F1781L . . . RALGAPA2 57186 broad.mit.edu 36 20 20432032 20432032 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020343 exon35 c.G5171A p.R1724Q . . . RALGAPA2 57186 broad.mit.edu 36 20 20533835 20533835 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020343 exon15 c.G2022T p.K674N . . . PLK1S1 55857 broad.mit.edu 36 20 21090892 21090892 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001163022 exon4 c.G477T p.K159N . . . PLK1S1 55857 broad.mit.edu 36 20 21134155 21134155 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001163022 exon6 c.G1069A p.V357I . . . XRN2 22803 broad.mit.edu 36 20 21262218 21262218 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012255 exon10 c.G895T p.G299X . . . XRN2 22803 broad.mit.edu 36 20 21315627 21315627 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012255 exon29 c.G2770T p.D924Y . . . TGM3 7053 broad.mit.edu 36 20 2238453 2238453 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003245 exon2 c.G158T p.R53I . . . CD93 22918 broad.mit.edu 36 20 23013795 23013795 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012072 exon1 c.C1035T p.D345D . . . CSTL1 128817 broad.mit.edu 36 20 23372576 23372576 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138283 exon3 c.G225A p.T75T . . . CST9L 128821 broad.mit.edu 36 20 23496861 23496861 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080610 exon1 c.C227A p.S76Y . . . CST3 1471 broad.mit.edu 36 20 23564002 23564002 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000099 exon2 c.C246T p.I82I . . . SNRPB 6628 broad.mit.edu 36 20 2396314 2396314 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003091 exon2 c.A94G p.K32E . . . VSX1 30813 broad.mit.edu 36 20 25004898 25004898 + Nonstop_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014588 exon5 c.G1097T p.X366L . . . ENTPD6 955 broad.mit.edu 36 20 25149875 25149875 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001114089 exon10 c.T900C p.D300D . . . NINL 22981 broad.mit.edu 36 20 25391036 25391036 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025176 exon20 c.C3565T p.R1189C . . . NINL 22981 broad.mit.edu 36 20 25405525 25405525 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025176 exon17 c.C2402T p.S801L . . . NINL 22981 broad.mit.edu 36 20 25410682 25410682 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025176 exon14 c.C1732T p.R578W . . . TMC2 117532 broad.mit.edu 36 20 2544830 2544830 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080751 exon15 c.C1920A p.I640I . . . NOP56 10528 broad.mit.edu 36 20 2585782 2585782 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006392 exon11 c.G1337A p.R446H . . . NOP56 10528 broad.mit.edu 36 20 2586841 2586841 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006392 exon12 c.C1686A p.F562L . . . NOP56 10528 broad.mit.edu 36 20 2586897 2586897 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006392 exon12 c.C1742T p.S581F . . . CPXM1 56265 broad.mit.edu 36 20 2723011 2723011 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001184699 exon14 c.G1808A p.G603D . . . VPS16 64601 broad.mit.edu 36 20 2789680 2789680 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080413 exon7 c.G695A p.R232Q . . . DEFB116 245930 broad.mit.edu 36 20 29354729 29354729 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037731 exon2 c.G256A p.D86N . . . REM1 28954 broad.mit.edu 36 20 29533804 29533804 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014012 exon4 c.C477T p.I159I . . . REM1 28954 broad.mit.edu 36 20 29533865 29533865 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014012 exon4 c.C538T p.R180W . . . COX4I2 84701 broad.mit.edu 36 20 29694966 29694966 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032609 exon4 c.G346A p.A116T . . . TPX2 22974 broad.mit.edu 36 20 29811588 29811588 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012112 exon4 c.A174T p.K58N . . . TTLL9 164395 broad.mit.edu 36 20 29922650 29922650 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008409 exon2 c.G60T p.K20N . . . TTLL9 164395 broad.mit.edu 36 20 29986308 29986308 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008409 exon12 c.C960T p.F320F . . . TTLL9 164395 broad.mit.edu 36 20 29990708 29990708 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008409 exon14 c.C1221A p.N407K . . . TM9SF4 9777 broad.mit.edu 36 20 30209317 30209317 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014742 exon14 c.C1389T p.L463L . . . ASXL1 171023 broad.mit.edu 36 20 30479811 30479811 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015338 exon5 c.G396A p.S132S . . . UBOX5 22888 broad.mit.edu 36 20 3050194 3050194 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014948 exon3 c.G1091T p.R364M . . . UBOX5 22888 broad.mit.edu 36 20 3050535 3050535 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014948 exon3 c.G750T p.Q250H . . . UBOX5 22888 broad.mit.edu 36 20 3050794 3050794 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014948 exon3 c.C491A p.A164D . . . UBOX5 22888 broad.mit.edu 36 20 3051974 3051974 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014948 exon2 c.G38T p.R13I . . . DNMT3B 1789 broad.mit.edu 36 20 30831887 30831887 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175848 exon2 c.G97A p.D33N . . . DNMT3B 1789 broad.mit.edu 36 20 30843150 30843150 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175848 exon8 c.G896A p.R299Q . . . DNMT3B 1789 broad.mit.edu 36 20 30848306 30848306 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175848 exon12 c.C1287A p.L429L . . . BPIL3 128859 broad.mit.edu 36 20 31083130 31083130 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_174897 exon1 c.T16C p.C6R . . . C20orf185 359710 broad.mit.edu 36 20 31120309 31120309 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182658 exon10 c.T1018C p.F340L . . . C20orf71 128861 broad.mit.edu 36 20 31269082 31269082 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178466 exon1 c.C79T p.P27S . . . PLUNC 51297 broad.mit.edu 36 20 31292900 31292900 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016583 exon6 c.C630A p.I210I . . . SNTA1 6640 broad.mit.edu 36 20 31464240 31464240 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003098 exon4 c.G711T p.E237D . . . SLC4A11 83959 broad.mit.edu 36 20 3163517 3163517 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174090 exon3 c.G241T p.D81Y . . . SLC4A11 83959 broad.mit.edu 36 20 3166200 3166200 + Silent SNP G A A rs35732230 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174090 exon2 c.C207T p.F69F . . . TRIB3 57761 broad.mit.edu 36 20 316760 316760 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021158 exon2 c.C106T p.R36X . . . NECAB3 63941 broad.mit.edu 36 20 31722175 31722175 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031232 exon3 c.G239T p.S80I . . . C20orf194 25943 broad.mit.edu 36 20 3243716 3243716 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009984 exon20 c.C1642A p.L548I . . . C20orf194 25943 broad.mit.edu 36 20 3269279 3269279 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009984 exon10 c.C853T p.R285W . . . NCOA6 23054 broad.mit.edu 36 20 32792215 32792215 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014071 exon11 c.A5506G p.T1836A . . . NCOA6 23054 broad.mit.edu 36 20 32792595 32792595 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014071 exon11 c.C5126A p.S1709Y . . . NCOA6 23054 broad.mit.edu 36 20 32793097 32793097 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014071 exon11 c.G4624T p.E1542X . . . NCOA6 23054 broad.mit.edu 36 20 32793801 32793801 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014071 exon11 c.C3920A p.S1307Y . . . NCOA6 23054 broad.mit.edu 36 20 32794364 32794364 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014071 exon11 c.G3357T p.Q1119H . . . GGT7 2686 broad.mit.edu 36 20 32912994 32912994 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178026 exon4 c.G590A p.R197Q . . . ACSS2 55902 broad.mit.edu 36 20 32973060 32973060 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018677 exon12 c.C1463A p.S488Y . . . MYH7B 57644 broad.mit.edu 36 20 33041359 33041359 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020884 exon20 c.C1869T p.F623F . . . MYH7B 57644 broad.mit.edu 36 20 33041746 33041746 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020884 exon22 c.C2075T p.S692L . . . TRPC4AP 26133 broad.mit.edu 36 20 33072720 33072720 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199368 exon9 c.G1128A p.E376E . . . TRPC4AP 26133 broad.mit.edu 36 20 33120810 33120810 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199368 exon3 c.G364T p.E122X . . . GDF5 8200 broad.mit.edu 36 20 33485526 33485526 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000557 exon2 c.G1101T p.K367N . . . CEP250 11190 broad.mit.edu 36 20 33529305 33529305 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007186 exon17 c.G2059T p.E687X . . . ERGIC3 51614 broad.mit.edu 36 20 33593556 33593556 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198398 exon2 c.G159T p.E53D . . . RBM12 10137 broad.mit.edu 36 20 33705107 33705107 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152838 exon3 c.C1552T p.R518X . . . RBM39 9584 broad.mit.edu 36 20 33765712 33765712 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004902 exon11 c.A905G p.E302G . . . RBM39 9584 broad.mit.edu 36 20 33790317 33790317 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004902 exon3 c.G88T p.E30X . . . PHF20 51230 broad.mit.edu 36 20 33923154 33923154 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016436 exon9 c.C1271T p.S424L . . . PHF20 51230 broad.mit.edu 36 20 33979193 33979193 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016436 exon14 c.T2082G p.C694W . . . EPB41L1 2036 broad.mit.edu 36 20 34229359 34229359 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012156 exon4 c.C414T p.F138F . . . NDRG3 57446 broad.mit.edu 36 20 34722199 34722199 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032013 exon13 c.C813T p.V271V . . . SAMHD1 25939 broad.mit.edu 36 20 34978814 34978814 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015474 exon8 c.C905A p.S302Y . . . ATRN 8455 broad.mit.edu 36 20 3501521 3501521 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139322 exon12 c.C2015T p.S672L . . . ATRN 8455 broad.mit.edu 36 20 3507320 3507320 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139322 exon15 c.C2445A p.F815L . . . ATRN 8455 broad.mit.edu 36 20 3507394 3507394 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139322 exon15 c.G2519A p.R840Q . . . RBL1 5933 broad.mit.edu 36 20 35080179 35080179 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002895 exon19 c.G2639T p.R880I . . . RBL1 5933 broad.mit.edu 36 20 35084576 35084576 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002895 exon17 c.G2450A p.R817Q . . . C20orf132 140699 broad.mit.edu 36 20 35174206 35174206 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152503 exon20 c.G2750T p.R917I . . . RPN2 6185 broad.mit.edu 36 20 35290438 35290438 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002951 exon12 c.C1371T p.N457N . . . TGM2 7052 broad.mit.edu 36 20 36194285 36194285 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004613 exon11 c.G1647T p.E549D . . . SIGLEC1 6614 broad.mit.edu 36 20 3630019 3630019 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_023068 exon6 c.G1498A p.A500T . . . KIAA1755 85449 broad.mit.edu 36 20 36303112 36303112 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029864 exon3 c.C835A p.L279I . . . BPI 671 broad.mit.edu 36 20 36366066 36366066 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001725 exon1 c.G39A p.P13P . . . BPI 671 broad.mit.edu 36 20 36388122 36388122 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001725 exon10 c.C1047A p.V349V . . . BPI 671 broad.mit.edu 36 20 36397415 36397415 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001725 exon14 c.G1350T p.E450D . . . RALGAPB 57148 broad.mit.edu 36 20 36578385 36578385 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020336 exon7 c.C1009T p.R337C . . . SLC32A1 140679 broad.mit.edu 36 20 36789551 36789551 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080552 exon2 c.G433T p.G145C . . . SLC32A1 140679 broad.mit.edu 36 20 36789834 36789834 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080552 exon2 c.C716T p.S239L . . . PPP1R16B 26051 broad.mit.edu 36 20 36980326 36980326 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172735 exon10 c.A1181G p.Q394R . . . FAM83D 81610 broad.mit.edu 36 20 37010008 37010008 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030919 exon3 c.G817A p.E273K . . . DHX35 60625 broad.mit.edu 36 20 37065815 37065815 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190809 exon10 c.G769T p.E257X . . . MAVS 57506 broad.mit.edu 36 20 3792907 3792907 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020746 exon6 c.G630A p.A210A . . . PANK2 80025 broad.mit.edu 36 20 3836859 3836859 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153638 exon2 c.G915A p.S305S . . . TOP1 7150 broad.mit.edu 36 20 39146539 39146539 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003286 exon8 c.G531T p.K177N . . . TOP1 7150 broad.mit.edu 36 20 39174979 39174979 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003286 exon14 c.G1452T p.K484N . . . PLCG1 5335 broad.mit.edu 36 20 39228805 39228805 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002660 exon19 c.C2193T p.F731F . . . ZHX3 23051 broad.mit.edu 36 20 39265008 39265008 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015035 exon3 c.G1963T p.E655X . . . CHD6 84181 broad.mit.edu 36 20 39555656 39555656 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032221 exon10 c.A1250G p.D417G . . . PTPRT 11122 broad.mit.edu 36 20 40261323 40261323 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133170 exon17 c.C2519T p.S840F . . . SMOX 54498 broad.mit.edu 36 20 4110483 4110483 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175840 exon4 c.G469A p.D157N . . . SRSF6 6431 broad.mit.edu 36 20 41522779 41522779 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006275 exon6 c.C697T p.R233X . . . SGK2 10110 broad.mit.edu 36 20 41633093 41633093 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170693 exon8 c.G489T p.E163D . . . MYBL2 4605 broad.mit.edu 36 20 41761899 41761899 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002466 exon7 c.C752T p.S251L . . . GTSF1L 149699 broad.mit.edu 36 20 41788440 41788440 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176791 exon1 c.C309A p.I103I . . . JPH2 57158 broad.mit.edu 36 20 42222051 42222051 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020433 exon2 c.G790A p.A264T . . . GDAP1L1 78997 broad.mit.edu 36 20 42326507 42326507 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024034 exon5 c.C654A p.I218I . . . HNF4A 3172 broad.mit.edu 36 20 42469463 42469463 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030003 exon3 c.G253T p.D85Y . . . SERINC3 10955 broad.mit.edu 36 20 42583983 42583983 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198941 exon1 c.C24A p.F8L . . . ADA 100 broad.mit.edu 36 20 42684644 42684644 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000022 exon9 c.C844T p.R282W . . . RIMS4 140730 broad.mit.edu 36 20 42819027 42819027 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182970 exon5 c.G517A p.A173T . . . TOMM34 10953 broad.mit.edu 36 20 43013950 43013950 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006809 exon4 c.C488T p.S163L . . . PI3 5266 broad.mit.edu 36 20 43238030 43238030 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002638 exon2 c.T194C p.V65A . . . PIGT 51604 broad.mit.edu 36 20 43482727 43482727 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184730 exon6 c.G707T p.W236L . . . WFDC10A 140832 broad.mit.edu 36 20 43691929 43691929 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_080753 exon1 c.A63G p.G21G . . . WFDC3 140686 broad.mit.edu 36 20 43851956 43851956 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_080614 exon2 c.A66G p.I22M . . . PLTP 5360 broad.mit.edu 36 20 43968388 43968388 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006227 exon8 c.G631A p.E211K . . . PLTP 5360 broad.mit.edu 36 20 43973274 43973274 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006227 exon3 c.C124A p.L42M . . . PLTP 5360 broad.mit.edu 36 20 43973487 43973487 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006227 exon2 c.C12T p.F4F . . . PCIF1 63935 broad.mit.edu 36 20 44002928 44002928 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022104 exon6 c.A461C p.K154T . . . PCIF1 63935 broad.mit.edu 36 20 44005147 44005147 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_022104 exon8 c.T678C p.I226I . . . MMP9 4318 broad.mit.edu 36 20 44072587 44072587 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004994 exon3 c.G430A p.A144T . . . MMP9 4318 broad.mit.edu 36 20 44075823 44075823 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004994 exon10 c.G1731T p.K577N . . . SLC12A5 57468 broad.mit.edu 36 20 44105288 44105288 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020708 exon9 c.G1156A p.D386N . . . CD40 958 broad.mit.edu 36 20 44185243 44185243 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001250 exon5 c.G475A p.E159K . . . SLC13A3 64849 broad.mit.edu 36 20 44650179 44650179 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193339 exon7 c.C897T p.F299F . . . SLC13A3 64849 broad.mit.edu 36 20 44672597 44672597 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193339 exon3 c.G436A p.A146T . . . EYA2 2139 broad.mit.edu 36 20 45066988 45066988 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_172110 exon4 c.A156G p.R52R . . . EYA2 2139 broad.mit.edu 36 20 45151346 45151346 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172110 exon8 c.G723A p.P241P . . . EYA2 2139 broad.mit.edu 36 20 45205123 45205123 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172110 exon10 c.C907T p.R303C . . . ZMYND8 23613 broad.mit.edu 36 20 45352414 45352414 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012408 exon7 c.G672T p.K224N . . . NCOA3 8202 broad.mit.edu 36 20 45686199 45686199 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174087 exon4 c.A221C p.E74A . . . NCOA3 8202 broad.mit.edu 36 20 45689288 45689288 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174087 exon6 c.G493T p.D165Y . . . NCOA3 8202 broad.mit.edu 36 20 45689804 45689804 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001174087 exon7 c.G625A p.E209K . . . NCOA3 8202 broad.mit.edu 36 20 45695680 45695680 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174087 exon9 c.G857A p.R286K . . . NCOA3 8202 broad.mit.edu 36 20 45709341 45709341 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174087 exon18 c.G3370T p.G1124X . . . PRNP 5621 broad.mit.edu 36 20 4627943 4627943 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_183079 exon2 c.C77T p.P26L . . . PREX1 57580 broad.mit.edu 36 20 46682445 46682445 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020820 exon34 c.G4407A p.T1469T . . . PREX1 57580 broad.mit.edu 36 20 46692152 46692152 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020820 exon29 c.G3736A p.E1246K . . . PREX1 57580 broad.mit.edu 36 20 46709915 46709915 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020820 exon16 c.G1830A p.Q610Q . . . ARFGEF2 10564 broad.mit.edu 36 20 47023152 47023152 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006420 exon12 c.T1589C p.F530S . . . ARFGEF2 10564 broad.mit.edu 36 20 47041073 47041074 + Missense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_006420 exon21 c.2904_2905TA . . . . ARFGEF2 10564 broad.mit.edu 36 20 47078551 47078551 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006420 exon37 c.C5002T p.R1668X . . . RASSF2 9770 broad.mit.edu 36 20 4712984 4712984 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170774 exon11 c.A916G p.T306A . . . RASSF2 9770 broad.mit.edu 36 20 4714954 4714954 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170774 exon10 c.C834T p.F278F . . . STAU1 6780 broad.mit.edu 36 20 47215990 47215990 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017453 exon3 c.A156C p.Q52H . . . ZNFX1 57169 broad.mit.edu 36 20 47297565 47297565 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021035 exon14 c.C5403A p.F1801L . . . ZNFX1 57169 broad.mit.edu 36 20 47305840 47305840 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021035 exon9 c.C2716T p.R906C . . . ZNFX1 57169 broad.mit.edu 36 20 47314747 47314747 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021035 exon5 c.C2064T p.I688I . . . ZNFX1 57169 broad.mit.edu 36 20 47316093 47316093 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021035 exon4 c.A1988G p.D663G . . . ZNFX1 57169 broad.mit.edu 36 20 47321182 47321182 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021035 exon3 c.C574T p.R192W . . . KCNB1 3745 broad.mit.edu 36 20 47423548 47423548 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004975 exon2 c.C1956A p.F652L . . . SLC9A8 23315 broad.mit.edu 36 20 47889534 47889534 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015266 exon4 c.G339A p.A113A . . . SPATA2 9825 broad.mit.edu 36 20 47956613 47956613 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001135773 exon3 c.C513T p.V171V . . . TMEM189-UBE2V1 387522 broad.mit.edu 36 20 48134083 48134083 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021988 exon3 c.C356A p.S119Y . . . PTPN1 5770 broad.mit.edu 36 20 48624505 48624505 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002827 exon5 c.G399T p.M133I . . . ADNP 23394 broad.mit.edu 36 20 48941668 48941668 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015339 exon5 c.C2990A p.S997Y . . . ADNP 23394 broad.mit.edu 36 20 48941949 48941949 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015339 exon5 c.C2709A p.I903I . . . ADNP 23394 broad.mit.edu 36 20 48943130 48943130 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015339 exon5 c.C1528A p.H510N . . . ADNP 23394 broad.mit.edu 36 20 48943263 48943263 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015339 exon5 c.C1395T p.F465F . . . KCNG1 3755 broad.mit.edu 36 20 49059815 49059815 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002237 exon2 c.C468T p.I156I . . . NFATC2 4773 broad.mit.edu 36 20 49482222 49482222 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012340 exon9 c.C2511T p.F837F . . . ATP9A 10079 broad.mit.edu 36 20 49651200 49651200 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006045 exon28 c.G3101A p.R1034Q . . . ATP9A 10079 broad.mit.edu 36 20 49726085 49726085 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006045 exon10 c.G869A p.R290Q . . . ZFP64 55734 broad.mit.edu 36 20 50202641 50202641 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018197 exon6 c.C1497A p.I499I . . . ZNF217 7764 broad.mit.edu 36 20 51626420 51626420 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006526 exon3 c.G2290T p.D764Y . . . ZNF217 7764 broad.mit.edu 36 20 51631422 51631422 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006526 exon1 c.G1351A p.E451K . . . CYP24A1 1591 broad.mit.edu 36 20 52208941 52208941 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000782 exon8 c.T1119G p.N373K . . . PROKR2 128674 broad.mit.edu 36 20 5230738 5230738 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144773 exon2 c.G1103T p.R368I . . . PROKR2 128674 broad.mit.edu 36 20 5231115 5231115 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144773 exon2 c.C726A p.C242X . . . CASS4 57091 broad.mit.edu 36 20 54461344 54461344 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020356 exon5 c.C1705A p.L569I . . . GPCPD1 56261 broad.mit.edu 36 20 5487375 5487375 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019593 exon18 c.G1623T p.R541R . . . SPO11 23626 broad.mit.edu 36 20 55343915 55343915 + Missense_Mutation SNP C T T rs28368082 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012444 exon7 c.C631T p.R211W . . . RAE1 8480 broad.mit.edu 36 20 55382157 55382157 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003610 exon10 c.C781T p.R261X . . . RBM38 55544 broad.mit.edu 36 20 55416263 55416263 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017495 exon4 c.C674T p.S225L . . . PCK1 5105 broad.mit.edu 36 20 55571558 55571558 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002591 exon5 c.G679T p.E227X . . . ZNF831 128611 broad.mit.edu 36 20 57199664 57199664 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178457 exon1 c.G195A p.T65T . . . ZNF831 128611 broad.mit.edu 36 20 57201353 57201353 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178457 exon1 c.C1884A p.F628L . . . ZNF831 128611 broad.mit.edu 36 20 57263068 57263068 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178457 exon5 c.G4909T p.E1637X . . . EDN3 1908 broad.mit.edu 36 20 57310011 57310011 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207033 exon2 c.G204A p.P68P . . . PHACTR3 116154 broad.mit.edu 36 20 57814528 57814528 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080672 exon8 c.C1212T p.A404A . . . PHACTR3 116154 broad.mit.edu 36 20 57849896 57849896 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080672 exon11 c.C1498T p.R500X . . . PHACTR3 116154 broad.mit.edu 36 20 57853654 57853654 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080672 exon12 c.G1603T p.E535X . . . SYCP2 10388 broad.mit.edu 36 20 57876252 57876252 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014258 exon38 c.C4034A p.P1345H . . . SYCP2 10388 broad.mit.edu 36 20 57910131 57910131 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014258 exon15 c.T1163G p.F388C . . . C20orf196 149840 broad.mit.edu 36 20 5792088 5792088 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152504 exon3 c.G597A p.Q199Q . . . C20orf177 63939 broad.mit.edu 36 20 57953159 57953159 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190826 exon5 c.G766T p.E256X . . . C20orf177 63939 broad.mit.edu 36 20 57953278 57953278 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190826 exon5 c.G885T p.K295N . . . C20orf177 63939 broad.mit.edu 36 20 57953494 57953494 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190826 exon5 c.G1101T p.E367D . . . MCM8 84515 broad.mit.edu 36 20 5914767 5914767 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032485 exon16 c.G2153A p.R718H . . . CDH4 1002 broad.mit.edu 36 20 59936740 59936740 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001794 exon12 c.C1869T p.C623C . . . CDH4 1002 broad.mit.edu 36 20 59938128 59938128 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001794 exon13 c.T2072G p.I691S . . . CDH4 1002 broad.mit.edu 36 20 59938236 59938236 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001794 exon13 c.C2180T p.A727V . . . PSMA7 5688 broad.mit.edu 36 20 60146660 60146660 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002792 exon5 c.G553T p.D185Y . . . OSBPL2 9885 broad.mit.edu 36 20 60297707 60297707 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014835 exon12 c.G1139A p.G380D . . . TCFL5 10732 broad.mit.edu 36 20 60943836 60943836 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006602 exon6 c.A1439G p.D480G . . . DIDO1 11083 broad.mit.edu 36 20 60994707 60994707 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001193370 exon13 c.C3154T p.R1052X . . . SLC17A9 63910 broad.mit.edu 36 20 61066953 61066953 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_022082 exon9 c.A935C p.K312T . . . YTHDF1 54915 broad.mit.edu 36 20 61305224 61305224 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017798 exon4 c.C513T p.S171S . . . YTHDF1 54915 broad.mit.edu 36 20 61305353 61305353 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017798 exon4 c.G384A p.A128A . . . ZGPAT 84619 broad.mit.edu 36 20 61810952 61810952 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181485 exon2 c.G576A p.E192E . . . ZBTB46 140685 broad.mit.edu 36 20 61892522 61892522 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025224 exon2 c.G33A p.T11T . . . ZBTB46 140685 broad.mit.edu 36 20 61892544 61892544 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025224 exon2 c.G11A p.R4Q . . . PRPF6 24148 broad.mit.edu 36 20 62101529 62101529 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012469 exon8 c.C996A p.I332I . . . TCEA2 6919 broad.mit.edu 36 20 62173713 62173713 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198723 exon10 c.G785A p.C262Y . . . MYT1 4661 broad.mit.edu 36 20 62309893 62309893 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004535 exon7 c.G900T p.E300D . . . MYT1 4661 broad.mit.edu 36 20 62319054 62319054 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004535 exon11 c.G1822A p.E608K . . . BMP2 650 broad.mit.edu 36 20 6707694 6707694 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001200 exon3 c.G1149T p.K383N . . . HAO1 54363 broad.mit.edu 36 20 7814189 7814189 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017545 exon7 c.C1021A p.R341R . . . ANGPT4 51378 broad.mit.edu 36 20 801726 801726 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015985 exon9 c.C1389T p.N463N . . . ANGPT4 51378 broad.mit.edu 36 20 818988 818988 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015985 exon2 c.C333A p.I111I . . . PLCB1 23236 broad.mit.edu 36 20 8667982 8667982 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182734 exon21 c.C2283A p.I761I . . . PLCB1 23236 broad.mit.edu 36 20 8670118 8670118 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182734 exon23 c.C2421T p.I807I . . . PLCB4 5332 broad.mit.edu 36 20 9349961 9349961 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000933 exon23 c.C2136A p.F712L . . . C20orf103 24141 broad.mit.edu 36 20 9446747 9446747 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199897 exon4 c.C404T p.S135F . . . PAK7 57144 broad.mit.edu 36 20 9509309 9509309 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177990 exon4 c.C473T p.P158L . . . PAK7 57144 broad.mit.edu 36 20 9509418 9509418 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177990 exon4 c.G364T p.E122X . . . ANKRD5 63926 broad.mit.edu 36 20 9967076 9967076 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198798 exon2 c.A127G p.T43A . . . ANKRD5 63926 broad.mit.edu 36 20 9973099 9973099 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198798 exon4 c.C604T p.R202X . . . ANKRD5 63926 broad.mit.edu 36 20 9978099 9978099 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198798 exon6 c.C882T p.G294G . . . ANKRD5 63926 broad.mit.edu 36 20 9978617 9978617 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198798 exon6 c.G1400T p.R467L . . . DIO3 1735 broad.mit.edu 36 14 101098157 101098157 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001362 exon1 c.G571A p.V191I . . . PPP2R5C 5527 broad.mit.edu 36 14 101429176 101429176 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178587 exon7 c.C776A p.S259Y . . . DYNC1H1 1778 broad.mit.edu 36 14 101522230 101522230 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001376 exon8 c.C1915T p.R639C . . . DYNC1H1 1778 broad.mit.edu 36 14 101540665 101540665 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001376 exon24 c.C4941T p.V1647V . . . DYNC1H1 1778 broad.mit.edu 36 14 101563606 101563606 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001376 exon46 c.G9020A p.R3007Q . . . HSP90AA1 3320 broad.mit.edu 36 14 101621016 101621016 + Nonsense_Mutation SNP C A A rs3208445 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005348 exon5 c.G736T p.E246X . . . TECPR2 9895 broad.mit.edu 36 14 101970378 101970378 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014844 exon9 c.G1471A p.E491K . . . RCOR1 23186 broad.mit.edu 36 14 102258363 102258363 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015156 exon11 c.A1267C p.N423H . . . CDC42BPB 9578 broad.mit.edu 36 14 102506333 102506333 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006035 exon14 c.G1903T p.D635Y . . . CDC42BPB 9578 broad.mit.edu 36 14 102508097 102508097 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006035 exon13 c.G1796A p.R599Q . . . MARK3 4140 broad.mit.edu 36 14 103039298 103039298 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001128919 exon17 c.C2216T p.A739V . . . BAG5 9529 broad.mit.edu 36 14 103095940 103095940 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001015048 exon2 c.G1315A p.D439N . . . BAG5 9529 broad.mit.edu 36 14 103096087 103096087 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001015048 exon2 c.C1168T p.R390X . . . PPP1R13B 23368 broad.mit.edu 36 14 103273899 103273899 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015316 exon15 c.G2916T p.Q972H . . . TDRD9 122402 broad.mit.edu 36 14 103550918 103550918 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153046 exon21 c.G2210A p.R737Q . . . AHNAK2 113146 broad.mit.edu 36 14 104477028 104477028 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C15805A p.L5269I . . . AHNAK2 113146 broad.mit.edu 36 14 104478491 104478491 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C14342A p.S4781Y . . . AHNAK2 113146 broad.mit.edu 36 14 104480072 104480072 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C12761T p.T4254I . . . AHNAK2 113146 broad.mit.edu 36 14 104480427 104480427 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C12406T p.P4136S . . . AHNAK2 113146 broad.mit.edu 36 14 104482215 104482215 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.G10618T p.E3540X . . . AHNAK2 113146 broad.mit.edu 36 14 104482883 104482883 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C9950T p.S3317L . . . AHNAK2 113146 broad.mit.edu 36 14 104483989 104483989 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C8844T p.V2948V . . . AHNAK2 113146 broad.mit.edu 36 14 104489566 104489566 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C3267A p.F1089L . . . AHNAK2 113146 broad.mit.edu 36 14 104491727 104491727 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138420 exon7 c.C1106T p.T369I . . . GPR132 29933 broad.mit.edu 36 14 104588754 104588754 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013345 exon4 c.C765T p.F255F . . . OR4N2 390429 broad.mit.edu 36 14 19365906 19365906 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004723 exon1 c.T459C p.F153F . . . OR4K2 390431 broad.mit.edu 36 14 19414314 19414314 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005501 exon1 c.G48A p.G16G . . . OR4K5 79317 broad.mit.edu 36 14 19459463 19459463 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005483 exon1 c.T858G p.I286M . . . OR4K15 81127 broad.mit.edu 36 14 19514101 19514101 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005486 exon1 c.C584A p.P195H . . . OR4K15 81127 broad.mit.edu 36 14 19514276 19514276 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005486 exon1 c.C759A p.S253S . . . OR4K14 122740 broad.mit.edu 36 14 19553181 19553181 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004712 exon1 c.G12A p.Q4Q . . . OR4K13 390433 broad.mit.edu 36 14 19572063 19572063 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004714 exon1 c.G695A p.R232Q . . . OR4K13 390433 broad.mit.edu 36 14 19572545 19572545 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004714 exon1 c.G213T p.M71I . . . OR4L1 122742 broad.mit.edu 36 14 19598124 19598124 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004717 exon1 c.C81A p.F27L . . . OR4L1 122742 broad.mit.edu 36 14 19598361 19598361 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004717 exon1 c.C318A p.F106L . . . OR4L1 122742 broad.mit.edu 36 14 19598947 19598947 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004717 exon1 c.C904T p.R302W . . . OR4K17 390436 broad.mit.edu 36 14 19656019 19656019 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004715 exon1 c.T614C p.V205A . . . OR11G2 390439 broad.mit.edu 36 14 19735758 19735758 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005503 exon1 c.T424G p.F142V . . . OR11G2 390439 broad.mit.edu 36 14 19736192 19736192 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005503 exon1 c.T858G p.V286V . . . OR11H6 122748 broad.mit.edu 36 14 19762339 19762339 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004480 exon1 c.C631A p.P211T . . . OR11H6 122748 broad.mit.edu 36 14 19762438 19762438 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004480 exon1 c.C730T p.L244F . . . TTC5 91875 broad.mit.edu 36 14 19838701 19838701 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138376 exon3 c.G301A p.E101K . . . PARP2 10038 broad.mit.edu 36 14 19889110 19889110 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042618 exon6 c.C486A p.I162I . . . PARP2 10038 broad.mit.edu 36 14 19890259 19890259 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042618 exon7 c.G513A p.T171T . . . TEP1 7011 broad.mit.edu 36 14 19927245 19927245 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007110 exon17 c.G2517A p.A839A . . . APEX1 328 broad.mit.edu 36 14 19995127 19995127 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080648 exon5 c.C577T p.R193C . . . APEX1 328 broad.mit.edu 36 14 19995371 19995371 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080648 exon5 c.G821A p.R274Q . . . RNASE9 390443 broad.mit.edu 36 14 20094861 20094861 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001110357 exon3 c.C208A p.L70I . . . OR6S1 341799 broad.mit.edu 36 14 20178894 20178894 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001968 exon1 c.C797T p.S266L . . . RNASE2 6036 broad.mit.edu 36 14 20493807 20493807 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002934 exon2 c.C37T p.L13F . . . SLC39A2 29986 broad.mit.edu 36 14 20539480 20539480 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014579 exon4 c.C832A p.L278I . . . RPGRIP1 57096 broad.mit.edu 36 14 20832744 20832744 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020366 exon2 c.C154T p.R52X . . . RPGRIP1 57096 broad.mit.edu 36 14 20855741 20855741 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020366 exon10 c.G1198A p.E400K . . . RPGRIP1 57096 broad.mit.edu 36 14 20859945 20859945 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020366 exon13 c.G1704T p.K568N . . . RPGRIP1 57096 broad.mit.edu 36 14 20862647 20862647 + Missense_Mutation SNP G A A rs74034910 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020366 exon14 c.G1793A p.R598Q . . . RPGRIP1 57096 broad.mit.edu 36 14 20863837 20863837 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020366 exon16 c.C2375T p.S792L . . . RPGRIP1 57096 broad.mit.edu 36 14 20886217 20886217 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020366 exon23 c.G3664T p.E1222X . . . SUPT16H 11198 broad.mit.edu 36 14 20890803 20890803 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007192 exon26 c.C3013T p.R1005C . . . CHD8 57680 broad.mit.edu 36 14 20943308 20943308 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020920 exon16 c.C2370A p.F790L . . . METTL3 56339 broad.mit.edu 36 14 21037042 21037042 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019852 exon10 c.T1598C p.L533S . . . OR10G2 26534 broad.mit.edu 36 14 21172518 21172518 + Nonsense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001005466 exon1 c.T321G p.Y107X . . . OR4E2 26686 broad.mit.edu 36 14 21204063 21204063 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001912 exon1 c.G927A p.T309T . . . OXA1L 5018 broad.mit.edu 36 14 22305622 22305622 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005015 exon1 c.C52A p.L18I . . . OXA1L 5018 broad.mit.edu 36 14 22307065 22307065 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005015 exon3 c.C464T p.A155V . . . LRP10 26020 broad.mit.edu 36 14 22415855 22415855 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014045 exon6 c.G1542T p.E514D . . . LRP10 26020 broad.mit.edu 36 14 22416211 22416211 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014045 exon7 c.G1777T p.D593Y . . . CEBPE 1053 broad.mit.edu 36 14 22657856 22657856 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001805 exon1 c.C285T p.F95F . . . SLC7A8 23428 broad.mit.edu 36 14 22705395 22705395 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012244 exon2 c.G346T p.G116X . . . MYH6 4624 broad.mit.edu 36 14 22921531 22921531 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002471 exon38 c.C5742T p.I1914I . . . MYH6 4624 broad.mit.edu 36 14 22928056 22928056 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002471 exon29 c.G4027A p.D1343N . . . MYH6 4624 broad.mit.edu 36 14 22935350 22935350 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002471 exon20 c.G2412T p.K804N . . . MYH7 4625 broad.mit.edu 36 14 22955290 22955290 + Silent SNP G A A rs7140196 by-cluster,by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000257 exon34 c.C4716T p.I1572I . . . MYH7 4625 broad.mit.edu 36 14 22956256 22956256 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000257 exon32 c.G4465T p.E1489X . . . MYH7 4625 broad.mit.edu 36 14 22972226 22972226 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000257 exon4 c.C252T p.F84F . . . MYH7 4625 broad.mit.edu 36 14 22972771 22972771 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000257 exon3 c.C11T p.S4L . . . AP1G2 8906 broad.mit.edu 36 14 23103419 23103419 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003917 exon10 c.C940A p.L314I . . . AP1G2 8906 broad.mit.edu 36 14 23103684 23103684 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003917 exon9 c.G848A p.R283Q . . . DHRS2 10202 broad.mit.edu 36 14 23183199 23183199 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005794 exon6 c.T528C p.Y176Y . . . LRRC16B 90668 broad.mit.edu 36 14 23604784 23604784 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138360 exon34 c.C3510T p.F1170F . . . DCAF11 80344 broad.mit.edu 36 14 23662125 23662125 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001163484 exon14 c.C1505T p.S502L . . . RNF31 55072 broad.mit.edu 36 14 23696672 23696672 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017999 exon16 c.C2712A p.A904A . . . CIDEB 27141 broad.mit.edu 36 14 23846459 23846459 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014430 exon4 c.G144A p.R48R . . . LTB4R 1241 broad.mit.edu 36 14 23855265 23855265 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_181657 exon2 c.T568G p.F190V . . . RIPK3 11035 broad.mit.edu 36 14 23877338 23877338 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006871 exon5 c.C621T p.F207F . . . NYNRIN 57523 broad.mit.edu 36 14 23948248 23948248 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025081 exon4 c.G1408T p.D470Y . . . NYNRIN 57523 broad.mit.edu 36 14 23955985 23955985 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025081 exon9 c.C5190A p.I1730I . . . STXBP6 29091 broad.mit.edu 36 14 24396132 24396132 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014178 exon3 c.C226T p.R76W . . . NOVA1 4857 broad.mit.edu 36 14 26011387 26011387 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002515 exon4 c.G498T p.M166I . . . NOVA1 4857 broad.mit.edu 36 14 26134460 26134460 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002515 exon2 c.C276T p.Y92Y . . . FOXG1 2290 broad.mit.edu 36 14 28306861 28306861 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005249 exon1 c.G625A p.E209K . . . FOXG1 2290 broad.mit.edu 36 14 28307606 28307606 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005249 exon1 c.G1370T p.R457I . . . PRKD1 5587 broad.mit.edu 36 14 29136594 29136594 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002742 exon16 c.C2288A p.S763Y . . . PRKD1 5587 broad.mit.edu 36 14 29173436 29173436 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002742 exon8 c.G1253T p.R418M . . . G2E3 55632 broad.mit.edu 36 14 30132573 30132573 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017769 exon6 c.T505C p.W169R . . . COCH 1690 broad.mit.edu 36 14 30419431 30419431 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004086 exon7 c.C459T p.P153P . . . HECTD1 25831 broad.mit.edu 36 14 30668189 30668189 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015382 exon25 c.G4139T p.S1380I . . . HEATR5A 25938 broad.mit.edu 36 14 30841462 30841462 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015473 exon27 c.C4375A p.L1459I . . . HEATR5A 25938 broad.mit.edu 36 14 30882925 30882925 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015473 exon15 c.C2277A p.I759I . . . HEATR5A 25938 broad.mit.edu 36 14 30913845 30913845 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015473 exon6 c.G910T p.E304X . . . HEATR5A 25938 broad.mit.edu 36 14 30925443 30925443 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015473 exon3 c.G400T p.E134X . . . C14orf126 112487 broad.mit.edu 36 14 30987156 30987156 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080664 exon3 c.G437A p.G146D . . . ARHGAP5 394 broad.mit.edu 36 14 31630743 31630743 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001030055 exon2 c.G1117A p.D373N . . . AKAP6 9472 broad.mit.edu 36 14 32085801 32085801 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004274 exon4 c.G2191A p.A731T . . . AKAP6 9472 broad.mit.edu 36 14 32217304 32217304 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004274 exon8 c.G2767T p.D923Y . . . AKAP6 9472 broad.mit.edu 36 14 32361874 32361874 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004274 exon13 c.G5104T p.E1702X AKAP6,breast,NS,Substitution - Missense,0 . . AKAP6 9472 broad.mit.edu 36 14 32363405 32363405 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004274 exon13 c.C6635G p.A2212G . . . NPAS3 64067 broad.mit.edu 36 14 33339213 33339213 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022123 exon11 c.C1853T p.T618M . . . EAPP 55837 broad.mit.edu 36 14 34055415 34055415 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018453 exon6 c.C710A p.S237Y . . . BAZ1A 11177 broad.mit.edu 36 14 34303983 34303983 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013448 exon22 c.C3544T p.L1182F . . . BAZ1A 11177 broad.mit.edu 36 14 34331822 34331822 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013448 exon12 c.C1420A p.L474I . . . SRP54 6729 broad.mit.edu 36 14 34557994 34557994 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003136 exon13 c.G1119T p.K373N . . . PPP2R3C 55012 broad.mit.edu 36 14 34624633 34624633 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017917 exon13 c.G1276A p.D426N . . . PPP2R3C 55012 broad.mit.edu 36 14 34635524 34635524 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017917 exon9 c.A829C p.R277R . . . PPP2R3C 55012 broad.mit.edu 36 14 34647118 34647118 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017917 exon5 c.C480A p.F160L . . . KIAA0391 9692 broad.mit.edu 36 14 34662342 34662342 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014672 exon2 c.C140A p.S47Y . . . NFKBIA 4792 broad.mit.edu 36 14 34941003 34941003 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020529 exon6 c.C921T p.D307D . . . INSM2 84684 broad.mit.edu 36 14 35074481 35074481 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032594 exon1 c.G1272T p.E424D . . . RALGAPA1 253959 broad.mit.edu 36 14 35174537 35174537 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_194301 exon31 c.C4177A p.L1393I . . . SSTR1 6751 broad.mit.edu 36 14 37748877 37748877 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001049 exon3 c.A532C p.N178H . . . CLEC14A 161198 broad.mit.edu 36 14 37794247 37794247 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_175060 exon1 c.T732C p.C244C . . . SEC23A 10484 broad.mit.edu 36 14 38579749 38579749 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006364 exon18 c.G2080T p.E694X . . . SIP1 8487 broad.mit.edu 36 14 38657038 38657038 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009183 exon3 c.C340T p.R114X . . . PNN 5411 broad.mit.edu 36 14 38715491 38715491 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002687 exon3 c.C195A p.F65L . . . PNN 5411 broad.mit.edu 36 14 38719982 38719982 + Nonsense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002687 exon9 c.A1318T p.K440X . . . MIA2 117153 broad.mit.edu 36 14 38786283 38786283 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054024 exon4 c.C754T p.R252W . . . MIA2 117153 broad.mit.edu 36 14 38786396 38786396 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_054024 exon4 c.G867T p.K289N . . . MIA2 117153 broad.mit.edu 36 14 38791774 38791774 + Missense_Mutation SNP G T T rs10134365 by-cluster,by-frequency,by-hapmap,by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054024 exon5 c.G1639T p.D547Y . . . CTAGE5 4253 broad.mit.edu 36 14 38841113 38841113 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203354 exon10 c.A789C p.K263N . . . FSCB 84075 broad.mit.edu 36 14 44043617 44043617 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032135 exon1 c.C2324T p.S775L FSCB,breast,NS,Substitution - Missense,0 . . FSCB 84075 broad.mit.edu 36 14 44044800 44044800 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032135 exon1 c.C1141A p.L381I . . . C14orf28 122525 broad.mit.edu 36 14 44439665 44439665 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001017923 exon2 c.C277A p.L93I . . . KLHL28 54813 broad.mit.edu 36 14 44484500 44484500 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017658 exon2 c.C382A p.L128I . . . FAM179B 23116 broad.mit.edu 36 14 44501849 44501849 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015091 exon1 c.C475A p.L159I . . . FAM179B 23116 broad.mit.edu 36 14 44583717 44583717 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015091 exon13 c.G4048T p.E1350X . . . FAM179B 23116 broad.mit.edu 36 14 44583802 44583802 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015091 exon13 c.C4133A p.S1378Y . . . FKBP3 2287 broad.mit.edu 36 14 44660551 44660551 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002013 exon4 c.C341A p.S114Y . . . FANCM 57697 broad.mit.edu 36 14 44703435 44703435 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020937 exon10 c.C1705T p.R569C . . . FANCM 57697 broad.mit.edu 36 14 44709645 44709645 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020937 exon12 c.G2106T p.E702D . . . FANCM 57697 broad.mit.edu 36 14 44714879 44714879 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020937 exon14 c.A3172C p.N1058H . . . C14orf106 55320 broad.mit.edu 36 14 44756067 44756067 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018353 exon13 c.A2908T p.R970W . . . C14orf106 55320 broad.mit.edu 36 14 44763284 44763284 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018353 exon11 c.G2256T p.K752N . . . C14orf106 55320 broad.mit.edu 36 14 44763683 44763683 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018353 exon11 c.G1857T p.L619F . . . C14orf106 55320 broad.mit.edu 36 14 44785933 44785933 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018353 exon2 c.A307C p.K103Q . . . MDGA2 161357 broad.mit.edu 36 14 46496336 46496336 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182830 exon9 c.C1186A p.L396I . . . MDGA2 161357 broad.mit.edu 36 14 46496546 46496546 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182830 exon9 c.C976T p.R326X . . . MDGA2 161357 broad.mit.edu 36 14 46600447 46600447 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182830 exon7 c.C386A p.S129Y . . . C14orf104 55172 broad.mit.edu 36 14 49162510 49162510 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001083908 exon2 c.G1870T p.E624X . . . SDCCAG1 9147 broad.mit.edu 36 14 49336941 49336941 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004713 exon23 c.G2319T p.E773D . . . SDCCAG1 9147 broad.mit.edu 36 14 49365695 49365695 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004713 exon13 c.G1059T p.M353I . . . SDCCAG1 9147 broad.mit.edu 36 14 49365849 49365849 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004713 exon12 c.G991A p.E331K . . . C14orf183 196913 broad.mit.edu 36 14 49620143 49620143 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001014830 exon5 c.C951A p.C317X . . . SOS2 6655 broad.mit.edu 36 14 49696031 49696031 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006939 exon10 c.C1720T p.R574C . . . SOS2 6655 broad.mit.edu 36 14 49696254 49696254 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006939 exon10 c.T1497G p.I499M . . . ATP5S 27109 broad.mit.edu 36 14 49862117 49862117 + Intron SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003803 exon5 c.A574C p.R192R . . . CDKL1 8814 broad.mit.edu 36 14 49868761 49868761 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004196 exon8 c.G938A p.R313Q . . . CDKL1 8814 broad.mit.edu 36 14 49932189 49932189 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004196 exon1 c.C151T p.R51W . . . ATL1 51062 broad.mit.edu 36 14 50096765 50096765 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181598 exon1 c.G32A p.W11X . . . NIN 51199 broad.mit.edu 36 14 50293678 50293678 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182944 exon18 c.G3820A p.D1274N . . . NIN 51199 broad.mit.edu 36 14 50294491 50294491 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182944 exon18 c.C3007T p.R1003X . . . NIN 51199 broad.mit.edu 36 14 50295071 50295071 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_182944 exon18 c.A2427C p.R809S . . . NIN 51199 broad.mit.edu 36 14 50298267 50298267 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182944 exon16 c.C1887T p.L629L . . . FRMD6 122786 broad.mit.edu 36 14 51251810 51251810 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152330 exon10 c.T843G p.I281M . . . FRMD6 122786 broad.mit.edu 36 14 51264417 51264417 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152330 exon14 c.G1765T p.D589Y . . . C14orf166 51637 broad.mit.edu 36 14 51530230 51530230 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016039 exon3 c.C226T p.R76X . . . PTGDR 5729 broad.mit.edu 36 14 51811281 51811281 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000953 exon2 c.G929A p.R310Q . . . TXNDC16 57544 broad.mit.edu 36 14 52024892 52024892 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020784 exon12 c.T1047G p.N349K . . . GPR137C 283554 broad.mit.edu 36 14 52136644 52136644 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099652 exon3 c.C552T p.C184C . . . ERO1L 30001 broad.mit.edu 36 14 52194475 52194475 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014584 exon11 c.C718A p.L240I . . . PSMC6 5706 broad.mit.edu 36 14 52244844 52244844 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002806 exon2 c.G195A p.Q65Q . . . PSMC6 5706 broad.mit.edu 36 14 52254754 52254754 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002806 exon9 c.G691T p.E231X . . . PSMC6 5706 broad.mit.edu 36 14 52255497 52255497 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002806 exon10 c.G810A p.T270T . . . PSMC6 5706 broad.mit.edu 36 14 52263990 52263990 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002806 exon14 c.C1117A p.H373N . . . STYX 6815 broad.mit.edu 36 14 52294219 52294219 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145251 exon7 c.C349A p.L117I . . . DDHD1 80821 broad.mit.edu 36 14 52583298 52583298 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160148 exon13 c.T2641G p.L881V . . . DDHD1 80821 broad.mit.edu 36 14 52599415 52599415 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160148 exon7 c.C1762T p.R588X . . . GMFB 2764 broad.mit.edu 36 14 54017386 54017386 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004124 exon5 c.G239T p.G80V . . . SAMD4A 23034 broad.mit.edu 36 14 54273697 54273697 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015589 exon3 c.C918T p.H306H . . . SAMD4A 23034 broad.mit.edu 36 14 54296637 54296637 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015589 exon6 c.C1182T p.I394I . . . SAMD4A 23034 broad.mit.edu 36 14 54306677 54306677 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015589 exon8 c.C1699T p.R567X . . . WDHD1 11169 broad.mit.edu 36 14 54492139 54492139 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007086 exon24 c.G2940T p.Q980H . . . WDHD1 11169 broad.mit.edu 36 14 54518129 54518129 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007086 exon16 c.C1942T p.R648X . . . WDHD1 11169 broad.mit.edu 36 14 54545142 54545142 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007086 exon5 c.G387T p.Q129H . . . SOCS4 122809 broad.mit.edu 36 14 54580443 54580443 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080867 exon2 c.C931T p.R311X . . . DLGAP5 9787 broad.mit.edu 36 14 54695039 54695039 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146015 exon14 c.C1827T p.F609F . . . DLGAP5 9787 broad.mit.edu 36 14 54716105 54716105 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146015 exon7 c.G769T p.D257Y . . . DLGAP5 9787 broad.mit.edu 36 14 54720033 54720033 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146015 exon3 c.A430C p.K144Q . . . FBXO34 55030 broad.mit.edu 36 14 54888947 54888947 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152231 exon2 c.C2086T p.R696W . . . KTN1 3895 broad.mit.edu 36 14 55153067 55153067 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004986 exon3 c.A603G p.K201K . . . KTN1 3895 broad.mit.edu 36 14 55188381 55188381 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004986 exon25 c.T2586G p.V862V . . . KTN1 3895 broad.mit.edu 36 14 55216061 55216061 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004986 exon41 c.C3803A p.S1268Y . . . C14orf101 54916 broad.mit.edu 36 14 56142131 56142131 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017799 exon5 c.C613A p.L205I . . . C14orf101 54916 broad.mit.edu 36 14 56152440 56152440 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017799 exon8 c.G883A p.E295K . . . MUDENG 55745 broad.mit.edu 36 14 56805854 56805854 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018229 exon1 c.C69A p.F23L . . . SLC35F4 341880 broad.mit.edu 36 14 57100816 57100816 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080455 exon8 c.C1356A p.F452L . . . SLC35F4 341880 broad.mit.edu 36 14 57106368 57106368 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080455 exon6 c.C1125A p.I375I . . . ACTR10 55860 broad.mit.edu 36 14 57768691 57768691 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018477 exon12 c.G1025A p.R342Q . . . PSMA3 5684 broad.mit.edu 36 14 57794409 57794409 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002788 exon5 c.G344T p.R115I . . . ARID4A 5926 broad.mit.edu 36 14 57903484 57903484 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_023000 exon23 c.A3492C p.K1164N . . . KIAA0586 9786 broad.mit.edu 36 14 57997539 57997539 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014749 exon13 c.G1739A p.R580Q . . . KIAA0586 9786 broad.mit.edu 36 14 58011120 58011120 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014749 exon18 c.C2449A p.L817M . . . KIAA0586 9786 broad.mit.edu 36 14 58025337 58025337 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014749 exon23 c.C3545T p.A1182V . . . DACT1 51339 broad.mit.edu 36 14 58181785 58181785 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016651 exon4 c.G691A p.A231T . . . RTN1 6252 broad.mit.edu 36 14 59282554 59282554 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021136 exon2 c.G640A p.E214K . . . C14orf135 64430 broad.mit.edu 36 14 59651680 59651680 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022495 exon3 c.G403T p.E135X . . . C14orf39 317761 broad.mit.edu 36 14 60004977 60004977 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174978 exon9 c.C706A p.L236I . . . C14orf39 317761 broad.mit.edu 36 14 60014805 60014805 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174978 exon5 c.T289G p.F97V . . . SIX4 51804 broad.mit.edu 36 14 60250038 60250038 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017420 exon3 c.C2186T p.S729F . . . SIX4 51804 broad.mit.edu 36 14 60250427 60250427 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017420 exon3 c.C1797A p.I599I . . . TRMT5 57570 broad.mit.edu 36 14 60512257 60512257 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020810 exon4 c.G1133T p.R378I . . . TRMT5 57570 broad.mit.edu 36 14 60512321 60512321 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020810 exon4 c.A1069C p.K357Q . . . SLC38A6 145389 broad.mit.edu 36 14 60566930 60566930 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153811 exon6 c.C418A p.L140I . . . PRKCH 5583 broad.mit.edu 36 14 60987382 60987382 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006255 exon6 c.T772G p.F258V . . . HIF1A 3091 broad.mit.edu 36 14 61256914 61256914 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181054 exon2 c.G97T p.E33X . . . HIF1A 3091 broad.mit.edu 36 14 61274629 61274629 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181054 exon10 c.G1321A p.E441K . . . SYT16 83851 broad.mit.edu 36 14 61606196 61606196 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031914 exon2 c.G646T p.G216X . . . KCNH5 27133 broad.mit.edu 36 14 62244118 62244118 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139318 exon11 c.C2828T p.S943L . . . KCNH5 27133 broad.mit.edu 36 14 62517375 62517375 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172376 exon6 c.G736T p.D246Y . . . KCNH5 27133 broad.mit.edu 36 14 62517732 62517732 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_172376 exon6 c.C379A p.L127I . . . KCNH5 27133 broad.mit.edu 36 14 62523613 62523613 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172376 exon5 c.G305A p.R102Q . . . KCNH5 27133 broad.mit.edu 36 14 62581607 62581607 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172375 exon1 c.G51T p.E17D . . . RHOJ 57381 broad.mit.edu 36 14 62817510 62817510 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020663 exon3 c.C306T p.V102V . . . WDR89 112840 broad.mit.edu 36 14 63135331 63135331 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080666 exon3 c.G1083T p.E361D . . . WDR89 112840 broad.mit.edu 36 14 63135775 63135775 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_080666 exon3 c.T639C p.C213C . . . WDR89 112840 broad.mit.edu 36 14 63136315 63136315 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080666 exon3 c.G99T p.K33N . . . SGPP1 81537 broad.mit.edu 36 14 63222694 63222694 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030791 exon3 c.G1208A p.R403Q . . . SYNE2 23224 broad.mit.edu 36 14 63531665 63531665 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015180 exon23 c.G2932T p.E978X . . . SYNE2 23224 broad.mit.edu 36 14 63592563 63592563 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015180 exon49 c.G9893A p.R3298Q . . . SYNE2 23224 broad.mit.edu 36 14 63680349 63680349 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015180 exon83 c.C15413T p.T5138M . . . SYNE2 23224 broad.mit.edu 36 14 63706763 63706763 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015180 exon94 c.C17065T p.R5689W . . . FNTB 2342 broad.mit.edu 36 14 64580807 64580807 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002028 exon9 c.G848A p.R283Q . . . PLEKHH1 57475 broad.mit.edu 36 14 67123690 67123690 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020715 exon29 c.G4080A p.G1360G . . . PIGH 5283 broad.mit.edu 36 14 67130231 67130231 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004569 exon2 c.C372A p.I124I . . . ARG2 384 broad.mit.edu 36 14 67187307 67187307 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172 exon8 c.G982T p.E328X . . . RDH11 51109 broad.mit.edu 36 14 67232125 67232125 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016026 exon1 c.C49A p.L17M . . . RDH12 145226 broad.mit.edu 36 14 67261682 67261682 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152443 exon5 c.G301A p.D101N . . . ZFYVE26 23503 broad.mit.edu 36 14 67291711 67291711 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015346 exon37 c.C6796T p.R2266W . . . ZFYVE26 23503 broad.mit.edu 36 14 67344285 67344285 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015346 exon5 c.C469T p.L157F . . . ACTN1 87 broad.mit.edu 36 14 68420772 68420772 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130005 exon14 c.G1501A p.E501K . . . GALNTL1 57452 broad.mit.edu 36 14 68878227 68878227 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020692 exon12 c.G1264T p.E422X . . . SRSF5 6430 broad.mit.edu 36 14 69305696 69305696 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039465 exon5 c.A341C p.N114T . . . SLC10A1 6554 broad.mit.edu 36 14 69333603 69333603 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003049 exon1 c.C23T p.A8V . . . SLC8A3 6547 broad.mit.edu 36 14 69585285 69585285 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033262 exon7 c.G2353T p.D785Y . . . SLC8A3 6547 broad.mit.edu 36 14 69585357 69585357 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033262 exon7 c.C2281A p.L761I . . . ADAM21 8747 broad.mit.edu 36 14 69995573 69995573 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003813 exon1 c.C1604A p.S535Y . . . ADAM21 8747 broad.mit.edu 36 14 69996036 69996036 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003813 exon1 c.T2067C p.I689I . . . MAP3K9 4293 broad.mit.edu 36 14 70286505 70286505 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033141 exon4 c.C1048T p.R350X . . . PCNX 22990 broad.mit.edu 36 14 70570463 70570463 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014982 exon18 c.C3731A p.S1244Y . . . PCNX 22990 broad.mit.edu 36 14 70581750 70581750 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014982 exon20 c.C4015T p.R1339X . . . PCNX 22990 broad.mit.edu 36 14 70583492 70583492 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014982 exon21 c.G4077T p.K1359N . . . SIPA1L1 26037 broad.mit.edu 36 14 71125048 71125048 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015556 exon2 c.C706T p.R236X . . . SIPA1L1 26037 broad.mit.edu 36 14 71125160 71125160 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015556 exon2 c.G818T p.R273M . . . SIPA1L1 26037 broad.mit.edu 36 14 71125559 71125559 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015556 exon2 c.A1217C p.K406T . . . SIPA1L1 26037 broad.mit.edu 36 14 71125680 71125680 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015556 exon2 c.C1338A p.S446S . . . SIPA1L1 26037 broad.mit.edu 36 14 71125785 71125785 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015556 exon2 c.C1443T p.I481I . . . SIPA1L1 26037 broad.mit.edu 36 14 71186934 71186934 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015556 exon5 c.C1948T p.R650W . . . SIPA1L1 26037 broad.mit.edu 36 14 71208105 71208105 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015556 exon8 c.T2772G p.V924V . . . SIPA1L1 26037 broad.mit.edu 36 14 71221915 71221915 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015556 exon10 c.G3188A p.R1063Q . . . SIPA1L1 26037 broad.mit.edu 36 14 71241224 71241224 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015556 exon13 c.C3680A p.S1227Y . . . DPF3 8110 broad.mit.edu 36 14 72260142 72260142 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012074 exon5 c.G477T p.E159D . . . RBM25 58517 broad.mit.edu 36 14 72645878 72645878 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021239 exon14 c.G1617T p.E539D . . . RBM25 58517 broad.mit.edu 36 14 72648032 72648032 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021239 exon16 c.G2061T p.K687N . . . PAPLN 89932 broad.mit.edu 36 14 72809055 72809055 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173462 exon26 c.A3686G p.E1229G . . . HEATR4 399671 broad.mit.edu 36 14 73058939 73058939 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203309 exon2 c.G530A p.R177Q . . . HEATR4 399671 broad.mit.edu 36 14 73059430 73059430 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_203309 exon2 c.G39T p.K13N . . . ACOT6 641372 broad.mit.edu 36 14 73156076 73156076 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037162 exon2 c.G404T p.R135I . . . PTGR2 145482 broad.mit.edu 36 14 73410658 73410658 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001146154 exon4 c.T336C p.N112N . . . PTGR2 145482 broad.mit.edu 36 14 73415755 73415755 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146154 exon6 c.A723G p.I241M . . . FAM161B 145483 broad.mit.edu 36 14 73479151 73479151 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152445 exon4 c.A946C p.I316L . . . COQ6 51004 broad.mit.edu 36 14 73489958 73489958 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182476 exon2 c.G231T p.E77D . . . C14orf45 80127 broad.mit.edu 36 14 73570544 73570544 + 5'UTR SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025057 exon4 c.G412T p.E138X . . . C14orf45 80127 broad.mit.edu 36 14 73586437 73586437 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025057 exon8 c.G1072T p.E358X . . . ALDH6A1 4329 broad.mit.edu 36 14 73603970 73603970 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005589 exon8 c.A908G p.N303S . . . KIAA0317 9870 broad.mit.edu 36 14 74212382 74212382 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039479 exon8 c.G853A p.E285K . . . FCF1 51077 broad.mit.edu 36 14 74269248 74269248 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015962 exon6 c.G427T p.D143Y . . . YLPM1 56252 broad.mit.edu 36 14 74316992 74316992 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019589 exon3 c.G1242A p.Q414Q . . . YLPM1 56252 broad.mit.edu 36 14 74335822 74335822 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019589 exon5 c.C4069T p.R1357X . . . PROX2 283571 broad.mit.edu 36 14 74399645 74399645 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080408 exon1 c.C646A p.P216T . . . DLST 1743 broad.mit.edu 36 14 74425732 74425732 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001933 exon5 c.G201T p.K67N . . . PGF 5228 broad.mit.edu 36 14 74485867 74485867 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002632 exon3 c.C261T p.C87C . . . MLH3 27030 broad.mit.edu 36 14 74567037 74567037 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040108 exon9 c.C3949T p.R1317W . . . MLH3 27030 broad.mit.edu 36 14 74582843 74582843 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040108 exon2 c.T3269C p.V1090A . . . MLH3 27030 broad.mit.edu 36 14 74583801 74583801 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040108 exon2 c.G2311T p.E771X . . . TMED10 10972 broad.mit.edu 36 14 74672264 74672264 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006827 exon4 c.G490T p.D164Y . . . TMED10 10972 broad.mit.edu 36 14 74684158 74684158 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006827 exon3 c.G373T p.D125Y . . . FOS 2353 broad.mit.edu 36 14 74817281 74817281 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005252 exon4 c.G544A p.E182K . . . BATF 10538 broad.mit.edu 36 14 75061225 75061225 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006399 exon2 c.C109T p.R37C . . . FLVCR2 55640 broad.mit.edu 36 14 75158185 75158185 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017791 exon2 c.C680T p.A227V . . . C14orf118 55668 broad.mit.edu 36 14 75709683 75709683 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017926 exon5 c.C946T p.R316X . . . C14orf118 55668 broad.mit.edu 36 14 75737924 75737924 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017926 exon10 c.G1426T p.E476X . . . ANGEL1 23357 broad.mit.edu 36 14 76339887 76339887 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015305 exon6 c.G1502T p.R501I . . . C14orf166B 145497 broad.mit.edu 36 14 76380960 76380960 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_194287 exon7 c.C690A p.F230L . . . TMEM63C 57156 broad.mit.edu 36 14 76775701 76775701 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020431 exon12 c.G809A p.R270H . . . POMT2 29954 broad.mit.edu 36 14 76821679 76821679 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013382 exon13 c.G1382T p.R461M . . . TMED8 283578 broad.mit.edu 36 14 76877930 76877930 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_213601 exon6 c.C915T p.F305F . . . VIPAR 63894 broad.mit.edu 36 14 76978716 76978716 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022067 exon11 c.G674T p.R225I . . . ISM2 145501 broad.mit.edu 36 14 77018422 77018422 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199296 exon4 c.C969T p.S323S . . . NRXN3 9369 broad.mit.edu 36 14 78504274 78504274 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004796 exon11 c.C1855T p.L619F . . . DIO2 1734 broad.mit.edu 36 14 79739187 79739187 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000793 exon3 c.G420A p.L140L . . . C14orf145 145508 broad.mit.edu 36 14 80329152 80329152 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152446 exon13 c.G1265A p.R422Q . . . TSHR 7253 broad.mit.edu 36 14 80675953 80675953 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000369 exon9 c.G870A p.K290K . . . STON2 85439 broad.mit.edu 36 14 80814605 80814605 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_033104 exon4 c.A803G p.N268S . . . SEL1L 6400 broad.mit.edu 36 14 81020454 81020454 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005065 exon19 c.C1914A p.F638L . . . SEL1L 6400 broad.mit.edu 36 14 81026555 81026555 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005065 exon13 c.C1262T p.S421L . . . FLRT2 23768 broad.mit.edu 36 14 85157915 85157915 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013231 exon2 c.G304A p.E102K . . . FLRT2 23768 broad.mit.edu 36 14 85158200 85158200 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013231 exon2 c.G589A p.D197N . . . FLRT2 23768 broad.mit.edu 36 14 85158512 85158512 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013231 exon2 c.A901G p.N301D . . . GPR65 8477 broad.mit.edu 36 14 87547425 87547425 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003608 exon2 c.G481A p.D161N . . . PTPN21 11099 broad.mit.edu 36 14 88005168 88005168 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007039 exon18 c.C3241A p.L1081I . . . PTPN21 11099 broad.mit.edu 36 14 88008436 88008436 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007039 exon15 c.C2776T p.R926X . . . PTPN21 11099 broad.mit.edu 36 14 88041421 88041421 + Nonsense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007039 exon5 c.A496T p.K166X . . . ZC3H14 79882 broad.mit.edu 36 14 88104238 88104238 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160104 exon3 c.G182A p.R61Q . . . EML5 161436 broad.mit.edu 36 14 88152291 88152291 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_183387 exon42 c.C5845T p.R1949X . . . EML5 161436 broad.mit.edu 36 14 88157359 88157359 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_183387 exon37 c.G5053A p.E1685K . . . EML5 161436 broad.mit.edu 36 14 88161103 88161103 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_183387 exon35 c.G4862A p.R1621Q . . . EML5 161436 broad.mit.edu 36 14 88232948 88232948 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_183387 exon15 c.C2340T p.F780F . . . C14orf143 90141 broad.mit.edu 36 14 89490062 89490062 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145231 exon2 c.C112A p.L38I . . . KCNK13 56659 broad.mit.edu 36 14 89720506 89720506 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022054 exon2 c.C633T p.C211C . . . C14orf102 55051 broad.mit.edu 36 14 89840256 89840256 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017970 exon5 c.G781T p.D261Y . . . TTC7B 145567 broad.mit.edu 36 14 90191185 90191185 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010854 exon12 c.C1364T p.A455V . . . RPS6KA5 9252 broad.mit.edu 36 14 90411414 90411414 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004755 exon15 c.G1880A p.R627Q . . . RPS6KA5 9252 broad.mit.edu 36 14 90456323 90456323 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004755 exon7 c.T786A p.N262K . . . RPS6KA5 9252 broad.mit.edu 36 14 90479262 90479262 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004755 exon5 c.T531C p.D177D . . . RPS6KA5 9252 broad.mit.edu 36 14 90483546 90483546 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004755 exon4 c.G496A p.E166K . . . C14orf159 80017 broad.mit.edu 36 14 90703470 90703470 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001102368 exon4 c.G252T p.E84D . . . SMEK1 55671 broad.mit.edu 36 14 91001498 91001498 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032560 exon12 c.G1640T p.R547I . . . CATSPERB 79820 broad.mit.edu 36 14 91124148 91124148 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024764 exon25 c.G2984T p.R995I . . . CATSPERB 79820 broad.mit.edu 36 14 91128060 91128060 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024764 exon23 c.C2749T p.R917W . . . CATSPERB 79820 broad.mit.edu 36 14 91157940 91157940 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024764 exon19 c.G2025T p.K675N . . . CATSPERB 79820 broad.mit.edu 36 14 91196010 91196010 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024764 exon15 c.G1356T p.K452N . . . CATSPERB 79820 broad.mit.edu 36 14 91259149 91259149 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024764 exon4 c.G306T p.T102T . . . CATSPERB 79820 broad.mit.edu 36 14 91261216 91261216 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024764 exon3 c.G129T p.E43D . . . FBLN5 10516 broad.mit.edu 36 14 91413708 91413708 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006329 exon10 c.A1061G p.D354G . . . TRIP11 9321 broad.mit.edu 36 14 91541351 91541351 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004239 exon11 c.C2722A p.L908I . . . SLC24A4 123041 broad.mit.edu 36 14 92029704 92029704 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153646 exon17 c.G1848A p.P616P . . . RIN3 79890 broad.mit.edu 36 14 92113548 92113548 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024832 exon3 c.G340A p.E114K . . . LGMN 5641 broad.mit.edu 36 14 92240455 92240455 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001008530 exon15 c.A1264C p.K422Q . . . GOLGA5 9950 broad.mit.edu 36 14 92333575 92333575 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005113 exon2 c.C40A p.L14I . . . GOLGA5 9950 broad.mit.edu 36 14 92333873 92333873 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005113 exon2 c.G338T p.R113I . . . GOLGA5 9950 broad.mit.edu 36 14 92360675 92360675 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005113 exon9 c.G1652A p.R551Q . . . GOLGA5 9950 broad.mit.edu 36 14 92369413 92369413 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005113 exon10 c.C1913T p.S638L . . . ITPK1 3705 broad.mit.edu 36 14 92530087 92530087 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142594 exon5 c.C255T p.I85I . . . MOAP1 64112 broad.mit.edu 36 14 92719419 92719419 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022151 exon3 c.C922T p.R308C . . . KIAA1409 57578 broad.mit.edu 36 14 93078742 93078742 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020818 exon14 c.C1171T p.R391C . . . KIAA1409 57578 broad.mit.edu 36 14 93108164 93108164 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020818 exon15 c.G1396A p.E466K . . . KIAA1409 57578 broad.mit.edu 36 14 93114046 93114046 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020818 exon18 c.C1786T p.R596C . . . KIAA1409 57578 broad.mit.edu 36 14 93149159 93149159 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020818 exon27 c.G3487A p.A1163T . . . KIAA1409 57578 broad.mit.edu 36 14 93222735 93222735 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020818 exon44 c.A6470G p.D2157G . . . FAM181A 90050 broad.mit.edu 36 14 93464429 93464429 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138344 exon3 c.C231T p.N77N . . . FAM181A 90050 broad.mit.edu 36 14 93465248 93465248 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138344 exon3 c.C1050A p.V350V . . . OTUB2 78990 broad.mit.edu 36 14 93575180 93575180 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_023112 exon3 c.A218C p.K73T . . . DDX24 57062 broad.mit.edu 36 14 93591244 93591244 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020414 exon7 c.C2029T p.R677X . . . DDX24 57062 broad.mit.edu 36 14 93596602 93596602 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020414 exon5 c.C1508T p.T503M . . . PPP4R4 57718 broad.mit.edu 36 14 93777952 93777952 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058237 exon10 c.G1051T p.E351X . . . PPP4R4 57718 broad.mit.edu 36 14 93786322 93786322 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058237 exon15 c.C1672T p.R558C . . . SERPINA1 5265 broad.mit.edu 36 14 93919036 93919036 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001127702 exon3 c.G292A p.D98N . . . SERPINA11 256394 broad.mit.edu 36 14 93979260 93979260 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080451 exon4 c.G973T p.D325Y . . . SERPINA12 145264 broad.mit.edu 36 14 94025739 94025739 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173850 exon5 c.G1024A p.A342T . . . SERPINA4 5267 broad.mit.edu 36 14 94103201 94103201 + Nonsense_Mutation SNP C A A rs13306799 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006215 exon3 c.C791A p.S264X . . . SERPINA4 5267 broad.mit.edu 36 14 94104258 94104258 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006215 exon4 c.C963A p.F321L . . . SERPINA3 12 broad.mit.edu 36 14 94158469 94158469 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001085 exon4 c.C956T p.S319L . . . CLMN 79789 broad.mit.edu 36 14 94740002 94740002 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024734 exon9 c.G1437A p.S479S . . . CLMN 79789 broad.mit.edu 36 14 94740326 94740326 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024734 exon9 c.G1113A p.A371A . . . CLMN 79789 broad.mit.edu 36 14 94740517 94740517 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024734 exon9 c.G922A p.E308K . . . TCL1A 8115 broad.mit.edu 36 14 95248349 95248349 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021966 exon2 c.C258A p.S86S . . . BDKRB2 624 broad.mit.edu 36 14 95773228 95773228 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000623 exon2 c.C31A p.L11M . . . BDKRB2 624 broad.mit.edu 36 14 95776781 95776781 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000623 exon3 c.C363T p.F121F . . . ATG2B 55102 broad.mit.edu 36 14 95831185 95831185 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018036 exon36 c.T5291G p.L1764R . . . ATG2B 55102 broad.mit.edu 36 14 95868646 95868646 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018036 exon9 c.C1307A p.S436X . . . C14orf129 51527 broad.mit.edu 36 14 95921643 95921643 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016472 exon3 c.G289T p.D97Y . . . PAPOLA 10914 broad.mit.edu 36 14 96056235 96056235 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032632 exon2 c.G99T p.E33D . . . VRK1 7443 broad.mit.edu 36 14 96392327 96392327 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003384 exon9 c.G817T p.D273Y . . . SETD3 84193 broad.mit.edu 36 14 98997320 98997320 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032233 exon4 c.G307T p.E103X . . . EML1 2009 broad.mit.edu 36 14 99401640 99401640 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008707 exon3 c.C287T p.T96M . . . EML1 2009 broad.mit.edu 36 14 99433376 99433376 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008707 exon8 c.C876T p.D292D . . . EML1 2009 broad.mit.edu 36 14 99445567 99445567 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008707 exon12 c.G1294A p.E432K . . . EML1 2009 broad.mit.edu 36 14 99446370 99446370 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008707 exon13 c.C1335A p.F445L . . . YY1 7528 broad.mit.edu 36 14 99812617 99812617 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003403 exon4 c.G941T p.R314I . . . WDR25 79446 broad.mit.edu 36 14 99917431 99917431 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001161476 exon2 c.C417A p.L139L . . . ZNF280A 129025 broad.mit.edu 36 22 21198699 21198699 + Frame_Shift_Del DEL T - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_080740 exon2 c.1256delA p.N419fs . . . XKR3 150165 broad.mit.edu 36 22 15644659 15644659 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_175878 exon4 c.A1230C p.P410P . . . XKR3 150165 broad.mit.edu 36 22 15668683 15668683 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175878 exon2 c.G281T p.R94I . . . CECR1 51816 broad.mit.edu 36 22 16050853 16050853 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177405 exon3 c.G228A p.T76T . . . CECR2 27443 broad.mit.edu 36 22 16356597 16356597 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031413 exon2 c.C260T p.T87M . . . CECR2 27443 broad.mit.edu 36 22 16408174 16408174 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031413 exon16 c.C3133T p.R1045W . . . BCL2L13 23786 broad.mit.edu 36 22 16565121 16565121 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015367 exon6 c.C569T p.S190L . . . BID 637 broad.mit.edu 36 22 16600849 16600849 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001196 exon5 c.C510A p.V170V . . . PEX26 55670 broad.mit.edu 36 22 16942752 16942752 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017929 exon3 c.A343C p.K115Q . . . CLTCL1 8218 broad.mit.edu 36 22 17555076 17555076 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007098 exon29 c.C4599A p.L1533L . . . CLTCL1 8218 broad.mit.edu 36 22 17597448 17597448 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001835 exon11 c.C1695T p.F565F . . . CLTCL1 8218 broad.mit.edu 36 22 17600769 17600769 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001835 exon9 c.C1441T p.R481W . . . HIRA 7290 broad.mit.edu 36 22 17720888 17720888 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003325 exon23 c.G2839A p.V947I . . . UFD1L 7353 broad.mit.edu 36 22 17824434 17824434 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005659 exon8 c.T572G p.F191C . . . UFD1L 7353 broad.mit.edu 36 22 17825656 17825656 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005659 exon7 c.G502A p.E168K . . . UFD1L 7353 broad.mit.edu 36 22 17843072 17843072 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005659 exon2 c.C57A p.F19L . . . TXNRD2 10587 broad.mit.edu 36 22 18278902 18278902 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006440 exon8 c.A660C p.K220N . . . DGCR8 54487 broad.mit.edu 36 22 18457238 18457238 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190326 exon4 c.G927T p.M309I . . . PI4KA 5297 broad.mit.edu 36 22 19434265 19434265 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058004 exon28 c.C2997T p.F999F . . . PI4KA 5297 broad.mit.edu 36 22 19445658 19445658 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058004 exon23 c.G2551T p.D851Y . . . CRKL 1399 broad.mit.edu 36 22 19618475 19618475 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005207 exon2 c.G720A p.A240A . . . CCDC116 164592 broad.mit.edu 36 22 20318735 20318735 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152612 exon3 c.C497T p.A166V . . . YPEL1 29799 broad.mit.edu 36 22 20387727 20387727 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013313 exon4 c.C202A p.L68I . . . PRAME 23532 broad.mit.edu 36 22 21222289 21222289 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206955 exon5 c.A812G p.H271R . . . PRAME 23532 broad.mit.edu 36 22 21222481 21222481 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_206955 exon5 c.G620A p.R207H . . . RTDR1 27156 broad.mit.edu 36 22 21731654 21731654 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014433 exon7 c.G1033A p.E345K . . . RTDR1 27156 broad.mit.edu 36 22 21736139 21736139 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014433 exon5 c.G594T p.K198N . . . RGL4 266747 broad.mit.edu 36 22 22364556 22364556 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153615 exon2 c.G214A p.E72K . . . MMP11 4320 broad.mit.edu 36 22 22452865 22452865 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005940 exon4 c.C579T p.F193F . . . GGT5 2687 broad.mit.edu 36 22 22952608 22952608 + Silent SNP C T T rs58692741 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004121 exon7 c.G1029A p.P343P . . . ADORA2A 135 broad.mit.edu 36 22 23167060 23167060 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000675 exon3 c.C842T p.S281L . . . ADORA2A 135 broad.mit.edu 36 22 23167121 23167121 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000675 exon3 c.G903T p.K301N . . . PIWIL3 440822 broad.mit.edu 36 22 23445745 23445745 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008496 exon20 c.T2502C p.Y834Y . . . PIWIL3 440822 broad.mit.edu 36 22 23480797 23480797 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008496 exon7 c.C727T p.R243C . . . PIWIL3 440822 broad.mit.edu 36 22 23481834 23481834 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008496 exon6 c.C609T p.I203I . . . SGSM1 129049 broad.mit.edu 36 22 23594350 23594350 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098497 exon11 c.C1002T p.S334S . . . SGSM1 129049 broad.mit.edu 36 22 23631121 23631121 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098497 exon21 c.C2785A p.L929I . . . SGSM1 129049 broad.mit.edu 36 22 23645920 23645920 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098497 exon24 c.G3153T p.E1051D . . . MYO18B 84700 broad.mit.edu 36 22 24487081 24487081 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032608 exon2 c.G22A p.A8T . . . MYO18B 84700 broad.mit.edu 36 22 24494630 24494630 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032608 exon4 c.G747T p.K249N . . . MYO18B 84700 broad.mit.edu 36 22 24495302 24495302 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032608 exon4 c.G1419T p.K473N . . . MYO18B 84700 broad.mit.edu 36 22 24624417 24624417 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032608 exon29 c.G4812T p.K1604N . . . MYO18B 84700 broad.mit.edu 36 22 24753385 24753385 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032608 exon43 c.G7445A p.R2482H . . . SEZ6L 23544 broad.mit.edu 36 22 25018897 25018897 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001184776 exon2 c.C620T p.S207L . . . SEZ6L 23544 broad.mit.edu 36 22 25066453 25066453 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001184776 exon10 c.C2067A p.V689V . . . SEZ6L 23544 broad.mit.edu 36 22 25101561 25101561 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184776 exon13 c.A2623G p.T875A . . . HPS4 89781 broad.mit.edu 36 22 25190708 25190708 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152841 exon9 c.C873T p.N291N . . . CRYBB1 1414 broad.mit.edu 36 22 25333956 25333956 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001887 exon4 c.G329A p.R110H . . . CRYBB1 1414 broad.mit.edu 36 22 25338142 25338142 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001887 exon3 c.G193A p.E65K . . . MN1 4330 broad.mit.edu 36 22 26526070 26526070 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002430 exon1 c.G462A p.E154E . . . PITPNB 23760 broad.mit.edu 36 22 26580906 26580906 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012399 exon11 c.C790T p.R264X . . . CCDC117 150275 broad.mit.edu 36 22 27512259 27512259 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173510 exon5 c.C785A p.S262Y . . . C22orf31 25770 broad.mit.edu 36 22 27784761 27784761 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015370 exon3 c.A842C p.K281T . . . C22orf31 25770 broad.mit.edu 36 22 27785128 27785128 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015370 exon3 c.G475T p.D159Y . . . RFPL1 5988 broad.mit.edu 36 22 28167868 28167868 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021026 exon2 c.C711T p.F237F . . . NEFH 4744 broad.mit.edu 36 22 28211820 28211820 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021076 exon3 c.G1192T p.E398X . . . NF2 4771 broad.mit.edu 36 22 28365126 28365126 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000268 exon3 c.C288A p.F96L . . . NF2 4771 broad.mit.edu 36 22 28399405 28399405 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000268 exon12 c.C1270T p.R424C . . . ASCC2 84164 broad.mit.edu 36 22 28516483 28516483 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032204 exon19 c.C2077T p.R693C . . . HORMAD2 150280 broad.mit.edu 36 22 28847626 28847626 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152510 exon9 c.G416T p.S139I . . . OSM 5008 broad.mit.edu 36 22 28990019 28990019 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020530 exon3 c.A612G p.S204S . . . SF3A1 10291 broad.mit.edu 36 22 29065169 29065169 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005409 exon10 c.G1252A p.A418T . . . CCDC157 550631 broad.mit.edu 36 22 29095460 29095460 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017437 exon4 c.G288T p.E96D . . . SEC14L4 284904 broad.mit.edu 36 22 29218505 29218505 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161368 exon8 c.C620T p.S207L . . . GAL3ST1 9514 broad.mit.edu 36 22 29281608 29281608 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004861 exon4 c.C604T p.R202C . . . MORC2 22880 broad.mit.edu 36 22 29662542 29662542 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014941 exon18 c.A1507G p.T503A . . . LIMK2 3985 broad.mit.edu 36 22 29993018 29993018 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005569 exon9 c.C1090T p.R364X . . . PATZ1 23598 broad.mit.edu 36 22 30053166 30053166 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032050 exon4 c.T1637C p.V546A . . . SFI1 9814 broad.mit.edu 36 22 30257078 30257078 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014775 exon4 c.C301T p.R101X . . . PISD 23761 broad.mit.edu 36 22 30345711 30345711 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014338 exon9 c.G1015A p.E339K . . . DEPDC5 9681 broad.mit.edu 36 22 30518763 30518763 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014662 exon12 c.C727T p.R243X . . . DEPDC5 9681 broad.mit.edu 36 22 30545144 30545144 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014662 exon22 c.C1803T p.F601F . . . DEPDC5 9681 broad.mit.edu 36 22 30548747 30548747 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014662 exon24 c.C2075A p.S692Y . . . RFPL2 10739 broad.mit.edu 36 22 30916963 30916963 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001159545 exon4 c.T663G p.D221E . . . BPIL2 254240 broad.mit.edu 36 22 31161742 31161742 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174932 exon8 c.C873A p.S291S . . . BPIL2 254240 broad.mit.edu 36 22 31171835 31171835 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174932 exon4 c.G523T p.E175X . . . FBXO7 25793 broad.mit.edu 36 22 31224280 31224280 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033024 exon9 c.C1095T p.I365I . . . TIMP3 7078 broad.mit.edu 36 22 31585356 31585356 + Missense_Mutation SNP G T T rs1804709 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000362 exon5 c.G628T p.D210Y . . . LARGE 9215 broad.mit.edu 36 22 32063727 32063727 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133642 exon10 c.C1192T p.R398C . . . HMGXB4 10042 broad.mit.edu 36 22 33991203 33991203 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003681 exon5 c.C822T p.F274F . . . MCM5 4174 broad.mit.edu 36 22 34142760 34142760 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006739 exon12 c.G1543A p.D515N . . . MCM5 4174 broad.mit.edu 36 22 34149257 34149257 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006739 exon16 c.G2026A p.E676K . . . APOL5 80831 broad.mit.edu 36 22 34452244 34452244 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_030642 exon3 c.T183C p.N61N . . . APOL2 23780 broad.mit.edu 36 22 34957364 34957364 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030882 exon4 c.G105A p.W35X . . . MYH9 4627 broad.mit.edu 36 22 35014324 35014324 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002473 exon34 c.G4852T p.D1618Y . . . MYH9 4627 broad.mit.edu 36 22 35019456 35019456 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002473 exon30 c.G3960T p.E1320D . . . CACNG2 10369 broad.mit.edu 36 22 35292391 35292391 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006078 exon3 c.C391T p.R131X . . . CACNG2 10369 broad.mit.edu 36 22 35428552 35428552 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006078 exon1 c.C16T p.R6X . . . TMPRSS6 164656 broad.mit.edu 36 22 35829231 35829231 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153609 exon2 c.C200T p.S67L . . . C1QTNF6 114904 broad.mit.edu 36 22 35908515 35908515 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182486 exon3 c.G496A p.E166K . . . SH3BP1 23616 broad.mit.edu 36 22 36391590 36391590 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020315 exon2 c.C657T p.F219F . . . TRIOBP 11078 broad.mit.edu 36 22 36451714 36451714 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039141 exon7 c.G3205T p.D1069Y . . . TRIOBP 11078 broad.mit.edu 36 22 36480864 36480864 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039141 exon13 c.C5414T p.S1805L . . . C22orf23 84645 broad.mit.edu 36 22 36673371 36673371 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032561 exon4 c.G212T p.R71I . . . PLA2G6 8398 broad.mit.edu 36 22 36846826 36846826 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199562 exon11 c.G1466A p.R489H . . . CSNK1E 1454 broad.mit.edu 36 22 37024737 37024737 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001894 exon7 c.C885T p.F295F . . . TOMM22 56993 broad.mit.edu 36 22 37408294 37408294 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020243 exon2 c.G138T p.E46D . . . APOBEC3D 140564 broad.mit.edu 36 22 37751575 37751575 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152426 exon4 c.C558T p.F186F . . . APOBEC3F 200316 broad.mit.edu 36 22 37775446 37775446 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145298 exon5 c.C637T p.R213W . . . APOBEC3G 60489 broad.mit.edu 36 22 37806991 37806991 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021822 exon3 c.C279A p.S93S . . . APOBEC3G 60489 broad.mit.edu 36 22 37812452 37812452 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021822 exon6 c.A958G p.R320G . . . MGAT3 4248 broad.mit.edu 36 22 38214204 38214204 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098270 exon1 c.G906A p.S302S . . . CACNA1I 8911 broad.mit.edu 36 22 38408539 38408539 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021096 exon35 c.G5757T p.E1919D . . . ENTHD1 150350 broad.mit.edu 36 22 38469776 38469776 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152512 exon7 c.G1678A p.A560T . . . ENTHD1 150350 broad.mit.edu 36 22 38470161 38470161 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152512 exon7 c.G1293T p.E431D . . . ENTHD1 150350 broad.mit.edu 36 22 38561872 38561872 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152512 exon4 c.C630T p.C210C . . . GRAP2 9402 broad.mit.edu 36 22 38681834 38681834 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004810 exon3 c.G144T p.K48N . . . GRAP2 9402 broad.mit.edu 36 22 38686041 38686041 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004810 exon4 c.G207T p.E69D . . . GRAP2 9402 broad.mit.edu 36 22 38692047 38692047 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004810 exon5 c.G398T p.R133M . . . TNRC6B 23112 broad.mit.edu 36 22 38992734 38992734 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015088 exon5 c.C2554T p.R852X . . . ADSL 158 broad.mit.edu 36 22 39075844 39075844 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000026 exon2 c.C216T p.I72I . . . SGSM3 27352 broad.mit.edu 36 22 39131093 39131093 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015705 exon7 c.C477T p.I159I . . . MCHR1 2847 broad.mit.edu 36 22 39407272 39407272 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005297 exon2 c.G663A p.T221T . . . SLC25A17 10478 broad.mit.edu 36 22 39518612 39518612 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006358 exon4 c.G197A p.R66Q . . . XPNPEP3 63929 broad.mit.edu 36 22 39635105 39635105 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022098 exon6 c.A889G p.I297V . . . EP300 2033 broad.mit.edu 36 22 39875849 39875849 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001429 exon14 c.C2518A p.P840T . . . EP300 2033 broad.mit.edu 36 22 39904782 39904782 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001429 exon31 c.C7121A p.S2374Y . . . ZC3H7B 23264 broad.mit.edu 36 22 40072060 40072060 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017590 exon14 c.G1567A p.D523N . . . PMM1 5372 broad.mit.edu 36 22 40309924 40309924 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002676 exon5 c.C459A p.F153L . . . XRCC6 2547 broad.mit.edu 36 22 40362714 40362714 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001469 exon5 c.G583T p.D195Y . . . MEI1 150365 broad.mit.edu 36 22 40471853 40471853 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152513 exon14 c.G1557T p.Q519H . . . CCDC134 79879 broad.mit.edu 36 22 40535858 40535858 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024821 exon3 c.G133T p.E45X . . . TCF20 6942 broad.mit.edu 36 22 40936687 40936687 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005650 exon1 c.G4569A p.P1523P . . . TCF20 6942 broad.mit.edu 36 22 40939594 40939594 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005650 exon1 c.G1662T p.E554D . . . POLDIP3 84271 broad.mit.edu 36 22 41328919 41328919 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178136 exon2 c.G251A p.R84Q . . . PACSIN2 11252 broad.mit.edu 36 22 41617023 41617023 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001184971 exon4 c.C327T p.F109F . . . SCUBE1 80274 broad.mit.edu 36 22 42065082 42065082 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173050 exon2 c.C192T p.G64G . . . MPPED1 758 broad.mit.edu 36 22 42160973 42160973 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001044370 exon3 c.G300A p.S100S . . . EFCAB6 64800 broad.mit.edu 36 22 42282258 42282258 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198856 exon25 c.C3016A p.P1006T . . . EFCAB6 64800 broad.mit.edu 36 22 42303638 42303638 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198856 exon24 c.C2836A p.L946I . . . EFCAB6 64800 broad.mit.edu 36 22 42327365 42327365 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198856 exon21 c.C2337A p.F779L . . . EFCAB6 64800 broad.mit.edu 36 22 42362361 42362361 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198856 exon16 c.C1596T p.F532F . . . EFCAB6 64800 broad.mit.edu 36 22 42405343 42405343 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198856 exon11 c.C829T p.R277X . . . EFCAB6 64800 broad.mit.edu 36 22 42414762 42414762 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198856 exon9 c.G608A p.W203X . . . EFCAB6 64800 broad.mit.edu 36 22 42438810 42438810 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198856 exon8 c.A453G p.E151E . . . EFCAB6 64800 broad.mit.edu 36 22 42463137 42463137 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198856 exon5 c.C121T p.R41X . . . PNPLA3 80339 broad.mit.edu 36 22 42673415 42673415 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025225 exon9 c.G1266A p.E422E . . . LDOC1L 84247 broad.mit.edu 36 22 43271654 43271654 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032287 exon2 c.G447T p.E149D . . . SMC1B 27127 broad.mit.edu 36 22 44173761 44173761 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_148674 exon6 c.G991T p.D331Y . . . FBLN1 2192 broad.mit.edu 36 22 44309880 44309880 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006487 exon8 c.T921C p.I307I . . . FBLN1 2192 broad.mit.edu 36 22 44315858 44315858 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006487 exon9 c.G1008T p.K336N . . . FBLN1 2192 broad.mit.edu 36 22 44339440 44339440 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006485 exon15 c.G1710T p.K570N . . . PPARA 5465 broad.mit.edu 36 22 45006766 45006766 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005036 exon8 c.C1125A p.I375I . . . PKDREJ 10343 broad.mit.edu 36 22 45031757 45031757 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006071 exon1 c.G6127T p.V2043F . . . PKDREJ 10343 broad.mit.edu 36 22 45031989 45031989 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006071 exon1 c.C5895A p.I1965I . . . PKDREJ 10343 broad.mit.edu 36 22 45032073 45032073 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006071 exon1 c.C5811A p.V1937V . . . PKDREJ 10343 broad.mit.edu 36 22 45033496 45033496 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006071 exon1 c.C4388A p.S1463Y . . . PKDREJ 10343 broad.mit.edu 36 22 45033788 45033788 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006071 exon1 c.C4096A p.L1366I . . . PKDREJ 10343 broad.mit.edu 36 22 45034631 45034631 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006071 exon1 c.C3253T p.R1085C . . . PKDREJ 10343 broad.mit.edu 36 22 45035489 45035489 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006071 exon1 c.C2395T p.R799X . . . TTC38 55020 broad.mit.edu 36 22 45049943 45049943 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017931 exon5 c.G500A p.R167Q . . . GTSE1 51512 broad.mit.edu 36 22 45090968 45090968 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016426 exon7 c.C1427A p.S476Y . . . GTSE1 51512 broad.mit.edu 36 22 45101146 45101146 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016426 exon9 c.C1655T p.A552V . . . GRAMD4 23151 broad.mit.edu 36 22 45401459 45401459 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015124 exon1 c.C99T p.S33S . . . ZBED4 9889 broad.mit.edu 36 22 48663404 48663404 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014838 exon2 c.T90C p.D30D . . . MOV10L1 54456 broad.mit.edu 36 22 48889255 48889255 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164104 exon5 c.G598T p.E200X . . . MOV10L1 54456 broad.mit.edu 36 22 48897825 48897825 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164104 exon9 c.G1372A p.E458K . . . MOV10L1 54456 broad.mit.edu 36 22 48906083 48906083 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164104 exon11 c.G1705A p.E569K . . . MOV10L1 54456 broad.mit.edu 36 22 48906805 48906805 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164104 exon12 c.G1795A p.E599K . . . MOV10L1 54456 broad.mit.edu 36 22 48914612 48914612 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164104 exon14 c.G1960T p.G654C . . . MOV10L1 54456 broad.mit.edu 36 22 48931293 48931293 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164104 exon21 c.C2730T p.I910I . . . TUBGCP6 85378 broad.mit.edu 36 22 49024690 49024690 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020461 exon1 c.C326A p.S109Y . . . SBF1 6305 broad.mit.edu 36 22 49247537 49247537 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002972 exon19 c.G2359A p.D787N . . . PPAN-P2RY11 692312 broad.mit.edu 36 19 10085713 10085713 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002566 exon2 c.C424T p.R142X . . . PPAN-P2RY11 692312 broad.mit.edu 36 19 10086102 10086102 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002566 exon2 c.C813T p.N271N . . . DNMT1 1786 broad.mit.edu 36 19 10126724 10126724 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001130823 exon20 c.G1501A p.E501K . . . DNMT1 1786 broad.mit.edu 36 19 10144797 10144797 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130823 exon9 c.G737A p.R246H . . . ICAM4 3386 broad.mit.edu 36 19 10259694 10259694 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001544 exon3 c.G730A p.G244S . . . ICAM5 7087 broad.mit.edu 36 19 10265499 10265499 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003259 exon7 c.G1591T p.E531X . . . ATG4D 84971 broad.mit.edu 36 19 10516657 10516657 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032885 exon3 c.A344G p.D115G . . . ILF3 3609 broad.mit.edu 36 19 10660332 10660332 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012218 exon19 c.C2529A p.G843G . . . DNM2 1785 broad.mit.edu 36 19 10765493 10765493 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001190716 exon8 c.C1090T p.R364C . . . DNM2 1785 broad.mit.edu 36 19 10767768 10767768 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190716 exon10 c.G1228A p.E410K . . . DNM2 1785 broad.mit.edu 36 19 10796751 10796751 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190716 exon18 c.G1912A p.A638T . . . DNM2 1785 broad.mit.edu 36 19 10800861 10800861 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190716 exon19 c.C2208T p.I736I . . . SMARCA4 6597 broad.mit.edu 36 19 11013012 11013012 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003072 exon30 c.C4200T p.I1400I . . . LDLR 3949 broad.mit.edu 36 19 11085281 11085281 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001195802 exon9 c.G1066A p.D356N . . . ZNF653 115950 broad.mit.edu 36 19 11470150 11470150 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138783 exon2 c.C304T p.P102S . . . ZNF627 199692 broad.mit.edu 36 19 11589118 11589118 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145295 exon4 c.G800A p.R267Q . . . ZNF627 199692 broad.mit.edu 36 19 11589370 11589370 + Missense_Mutation SNP G A A rs72489416 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145295 exon4 c.G1052A p.R351Q . . . ZNF627 199692 broad.mit.edu 36 19 11589453 11589453 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145295 exon4 c.C1135T p.R379X . . . ZNF823 55552 broad.mit.edu 36 19 11694351 11694351 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001080493 exon4 c.A998C p.K333T . . . ZNF823 55552 broad.mit.edu 36 19 11694825 11694825 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080493 exon4 c.C524A p.S175Y . . . ZNF823 55552 broad.mit.edu 36 19 11695017 11695017 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080493 exon4 c.C332T p.S111L . . . ZNF491 126069 broad.mit.edu 36 19 11778528 11778528 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152356 exon3 c.C760T p.R254C . . . ZNF491 126069 broad.mit.edu 36 19 11778796 11778796 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152356 exon3 c.G1028A p.R343Q . . . ZNF491 126069 broad.mit.edu 36 19 11778883 11778883 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152356 exon3 c.G1115T p.R372I . . . ZNF440 126070 broad.mit.edu 36 19 11803750 11803750 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152357 exon4 c.A759C p.E253D . . . ZNF440 126070 broad.mit.edu 36 19 11804750 11804750 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152357 exon4 c.G1759A p.E587K . . . ZNF439 90594 broad.mit.edu 36 19 11838403 11838403 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152262 exon2 c.G227T p.R76I . . . ZNF439 90594 broad.mit.edu 36 19 11839387 11839387 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152262 exon3 c.G503A p.R168K . . . ZNF439 90594 broad.mit.edu 36 19 11839601 11839601 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152262 exon3 c.G717T p.E239D . . . ZNF439 90594 broad.mit.edu 36 19 11839669 11839669 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152262 exon3 c.G785T p.R262I . . . ZNF439 90594 broad.mit.edu 36 19 11839921 11839921 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152262 exon3 c.G1037T p.R346I . . . ZNF700 90592 broad.mit.edu 36 19 11921000 11921000 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144566 exon4 c.G1161T p.E387D . . . ZNF433 163059 broad.mit.edu 36 19 11989714 11989714 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080411 exon3 c.C177T p.Y59Y . . . ZNF20 7568 broad.mit.edu 36 19 12107324 12107324 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021143 exon3 c.G191T p.R64I . . . ZNF625 90589 broad.mit.edu 36 19 12117140 12117140 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145233 exon4 c.C893T p.S298L . . . ZNF625 90589 broad.mit.edu 36 19 12117527 12117527 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145233 exon4 c.G506A p.R169Q . . . ZNF136 7695 broad.mit.edu 36 19 12158659 12158659 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003437 exon4 c.C466T p.R156X . . . ZNF44 51710 broad.mit.edu 36 19 12244305 12244305 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016264 exon4 c.G1765T p.E589X . . . ZNF44 51710 broad.mit.edu 36 19 12244447 12244447 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016264 exon4 c.C1623A p.F541L . . . ZNF563 147837 broad.mit.edu 36 19 12290921 12290921 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145276 exon4 c.G918T p.E306D . . . ZNF563 147837 broad.mit.edu 36 19 12294451 12294451 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145276 exon2 c.G78T p.K26N . . . ZNF442 79973 broad.mit.edu 36 19 12322065 12322065 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030824 exon6 c.C1334A p.S445Y . . . ZNF442 79973 broad.mit.edu 36 19 12322221 12322221 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030824 exon6 c.G1178A p.R393Q . . . ZNF442 79973 broad.mit.edu 36 19 12322293 12322293 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030824 exon6 c.G1106T p.R369I . . . ZNF442 79973 broad.mit.edu 36 19 12322473 12322473 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030824 exon6 c.G926A p.R309Q . . . ZNF799 90576 broad.mit.edu 36 19 12362625 12362625 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080821 exon4 c.G1587T p.E529D . . . ZNF443 10224 broad.mit.edu 36 19 12402048 12402048 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005815 exon4 c.G1938T p.E646D . . . ZNF443 10224 broad.mit.edu 36 19 12402399 12402399 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005815 exon4 c.G1587T p.E529D . . . ZNF443 10224 broad.mit.edu 36 19 12402592 12402592 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005815 exon4 c.G1394A p.R465Q . . . ZNF443 10224 broad.mit.edu 36 19 12402806 12402806 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005815 exon4 c.G1180T p.E394X . . . ZNF443 10224 broad.mit.edu 36 19 12402984 12402984 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005815 exon4 c.G1002T p.E334D . . . ZNF709 163051 broad.mit.edu 36 19 12436907 12436907 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152601 exon4 c.G829T p.E277X . . . ZNF709 163051 broad.mit.edu 36 19 12438565 12438565 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152601 exon2 c.G103T p.E35X . . . ZNF490 57474 broad.mit.edu 36 19 12552932 12552932 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020714 exon5 c.G957A p.T319T . . . ZNF490 57474 broad.mit.edu 36 19 12555260 12555260 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020714 exon3 c.G273T p.K91N . . . MAN2B1 4125 broad.mit.edu 36 19 12619346 12619346 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000528 exon22 c.G2731A p.E911K . . . RNASEH2A 10535 broad.mit.edu 36 19 12779087 12779087 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006397 exon3 c.C267T p.V89V . . . MAST1 22983 broad.mit.edu 36 19 12819769 12819769 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014975 exon7 c.C672A p.I224I . . . GCDH 2639 broad.mit.edu 36 19 12863653 12863653 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013976 exon4 c.C136T p.P46S . . . GCDH 2639 broad.mit.edu 36 19 12865318 12865318 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013976 exon6 c.C356T p.S119L . . . CACNA1A 773 broad.mit.edu 36 19 13200558 13200558 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001127221 exon37 c.C5583A p.P1861P . . . CACNA1A 773 broad.mit.edu 36 19 13202002 13202002 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon36 c.G5426A p.R1809H . . . CACNA1A 773 broad.mit.edu 36 19 13203526 13203526 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon35 c.C5402A p.S1801Y . . . CACNA1A 773 broad.mit.edu 36 19 13206847 13206847 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon34 c.T5141G p.V1714G . . . CACNA1A 773 broad.mit.edu 36 19 13226938 13226938 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon29 c.G4729A p.A1577T . . . CACNA1A 773 broad.mit.edu 36 19 13247702 13247702 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon24 c.C3954A p.F1318L . . . CACNA1A 773 broad.mit.edu 36 19 13280321 13280321 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon13 c.G1693A p.E565K . . . CACNA1A 773 broad.mit.edu 36 19 13284557 13284557 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon12 c.G1597A p.E533K . . . CACNA1A 773 broad.mit.edu 36 19 13331495 13331495 + Silent SNP G A A rs17846910 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon6 c.C903T p.F301F . . . CACNA1A 773 broad.mit.edu 36 19 13337147 13337147 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon5 c.C768T p.C256C . . . CACNA1A 773 broad.mit.edu 36 19 13337262 13337262 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001174080 exon5 c.C653T p.S218L . . . CC2D1A 54862 broad.mit.edu 36 19 13898824 13898824 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017721 exon21 c.G2159A p.R720H . . . CD97 976 broad.mit.edu 36 19 14369711 14369711 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001025160 exon7 c.C636A p.F212L . . . CD97 976 broad.mit.edu 36 19 14378769 14378769 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001025160 exon16 c.C2057T p.A686V . . . PKN1 5585 broad.mit.edu 36 19 14441255 14441255 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_213560 exon16 c.C2097T p.F699F . . . CLEC17A 388512 broad.mit.edu 36 19 14567090 14567090 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207390 exon7 c.G357T p.V119V . . . EMR3 84658 broad.mit.edu 36 19 14626944 14626944 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032571 exon6 c.C427A p.L143I . . . ZNF333 84449 broad.mit.edu 36 19 14678559 14678559 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032433 exon7 c.G485A p.R162H . . . ZNF333 84449 broad.mit.edu 36 19 14687244 14687244 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032433 exon8 c.G562T p.E188X . . . ZNF333 84449 broad.mit.edu 36 19 14690226 14690226 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032433 exon12 c.G1087A p.D363N . . . EMR2 30817 broad.mit.edu 36 19 14724176 14724176 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152920 exon14 c.C1573A p.L525I . . . EMR2 30817 broad.mit.edu 36 19 14737372 14737372 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152920 exon8 c.C645A p.F215L . . . EMR2 30817 broad.mit.edu 36 19 14744285 14744285 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152920 exon5 c.C224T p.S75L . . . CASP14 23581 broad.mit.edu 36 19 15025395 15025395 + Missense_Mutation SNP C T T rs61731993 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012114 exon3 c.C130T p.R44W . . . CASP14 23581 broad.mit.edu 36 19 15025711 15025711 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012114 exon4 c.G345T p.K115N . . . OR1I1 126370 broad.mit.edu 36 19 15059262 15059262 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004713 exon1 c.C386T p.P129L . . . OR1I1 126370 broad.mit.edu 36 19 15059473 15059473 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004713 exon1 c.C597T p.I199I . . . SYDE1 85360 broad.mit.edu 36 19 15085675 15085675 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033025 exon8 c.C2109T p.F703F . . . BRD4 23476 broad.mit.edu 36 19 15216563 15216563 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_058243 exon12 c.G2169A p.P723P . . . PGLYRP2 114770 broad.mit.edu 36 19 15448015 15448015 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052890 exon2 c.C466T p.P156S . . . PGLYRP2 114770 broad.mit.edu 36 19 15448160 15448160 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052890 exon2 c.A321C p.E107D . . . CYP4F22 126410 broad.mit.edu 36 19 15501536 15501536 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173483 exon4 c.C239T p.A80V . . . OR10H1 26539 broad.mit.edu 36 19 15778911 15778911 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013940 exon1 c.G937T p.E313X . . . OR10H4 126541 broad.mit.edu 36 19 15921764 15921764 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004465 exon1 c.C947T p.S316F . . . TPM4 7171 broad.mit.edu 36 19 16053751 16053751 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145160 exon3 c.G269A p.R90Q . . . EPS15L1 58513 broad.mit.edu 36 19 16333601 16333601 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021235 exon23 c.G2575T p.D859Y . . . EPS15L1 58513 broad.mit.edu 36 19 16374194 16374194 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_021235 exon16 c.A1729G p.T577A . . . C19orf44 84167 broad.mit.edu 36 19 16473252 16473252 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032207 exon2 c.G649T p.E217X . . . NWD1 284434 broad.mit.edu 36 19 16760834 16760834 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007525 exon13 c.G2773A p.A925T . . . NWD1 284434 broad.mit.edu 36 19 16760951 16760951 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007525 exon13 c.C2890A p.L964I . . . CPAMD8 27151 broad.mit.edu 36 19 16899831 16899831 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015692 exon25 c.G3499A p.A1167T . . . CPAMD8 27151 broad.mit.edu 36 19 16901037 16901037 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015692 exon24 c.C3000A p.I1000I . . . CPAMD8 27151 broad.mit.edu 36 19 16947913 16947913 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015692 exon16 c.G1948A p.D650N . . . CPAMD8 27151 broad.mit.edu 36 19 16952315 16952315 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015692 exon14 c.C1718A p.S573Y . . . HAUS8 93323 broad.mit.edu 36 19 17024678 17024678 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001011699 exon10 c.G883A p.E295K . . . NR2F6 2063 broad.mit.edu 36 19 17204227 17204227 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005234 exon4 c.G1149T p.E383D . . . USHBP1 83878 broad.mit.edu 36 19 17227231 17227231 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031941 exon10 c.G1655A p.G552E . . . USHBP1 83878 broad.mit.edu 36 19 17231501 17231501 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031941 exon6 c.G809A p.R270H . . . ANKLE1 126549 broad.mit.edu 36 19 17255193 17255193 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152363 exon5 c.C620T p.A207V . . . PLVAP 83483 broad.mit.edu 36 19 17337358 17337358 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031310 exon3 c.C916T p.R306C . . . PLVAP 83483 broad.mit.edu 36 19 17337993 17337993 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031310 exon2 c.G381A p.T127T . . . BST2 684 broad.mit.edu 36 19 17375561 17375561 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004335 exon4 c.C486T p.S162S . . . FAM125A 93343 broad.mit.edu 36 19 17395604 17395604 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138401 exon6 c.C636A p.I212I . . . NXNL1 115861 broad.mit.edu 36 19 17432367 17432367 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138454 exon1 c.G312T p.E104D . . . SLC27A1 376497 broad.mit.edu 36 19 17476280 17476280 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198580 exon12 c.G1800A p.Q600Q . . . FAM129C 199786 broad.mit.edu 36 19 17504117 17504117 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173544 exon4 c.C325T p.R109W . . . UNC13A 23025 broad.mit.edu 36 19 17607859 17607859 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080421 exon25 c.G3189T p.K1063N . . . UNC13A 23025 broad.mit.edu 36 19 17607965 17607965 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080421 exon25 c.C3083T p.A1028V . . . UNC13A 23025 broad.mit.edu 36 19 17611661 17611661 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080421 exon22 c.C2844A p.L948L . . . UNC13A 23025 broad.mit.edu 36 19 17613351 17613351 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080421 exon20 c.C2487T p.F829F . . . MAP1S 55201 broad.mit.edu 36 19 17692830 17692830 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018174 exon2 c.C204A p.F68L . . . B3GNT3 10331 broad.mit.edu 36 19 17783925 17783925 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014256 exon3 c.C1113T p.I371I . . . SLC5A5 6528 broad.mit.edu 36 19 17852703 17852703 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000453 exon8 c.C999T p.F333F . . . SLC5A5 6528 broad.mit.edu 36 19 17860152 17860152 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000453 exon13 c.C1539T p.D513D . . . KIAA1683 80726 broad.mit.edu 36 19 18237994 18237994 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025249 exon3 c.G1356T p.K452N . . . LRRC25 126364 broad.mit.edu 36 19 18368389 18368389 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145256 exon1 c.G385T p.D129Y . . . ELL 8178 broad.mit.edu 36 19 18417072 18417072 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006532 exon11 c.C1711T p.R571X . . . FKBP8 23770 broad.mit.edu 36 19 18511482 18511482 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012181 exon3 c.C341T p.S114L . . . UPF1 5976 broad.mit.edu 36 19 18835253 18835253 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002911 exon19 c.C2607T p.G869G . . . SUGP2 10147 broad.mit.edu 36 19 18996606 18996606 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014884 exon3 c.C1551T p.F517F . . . SUGP2 10147 broad.mit.edu 36 19 19002819 19002819 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014884 exon2 c.G62A p.R21Q . . . TMEM161A 54929 broad.mit.edu 36 19 19093453 19093453 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017814 exon8 c.C681T p.I227I . . . TM6SF2 53345 broad.mit.edu 36 19 19242886 19242886 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001524 exon2 c.C144T p.F48F . . . ZNF101 94039 broad.mit.edu 36 19 19649768 19649768 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033204 exon2 c.G99A p.T33T . . . ZNF101 94039 broad.mit.edu 36 19 19651292 19651292 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033204 exon4 c.G494A p.R165Q . . . ZNF14 7561 broad.mit.edu 36 19 19683283 19683283 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021030 exon4 c.C1807T p.R603X . . . ZNF14 7561 broad.mit.edu 36 19 19683535 19683535 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021030 exon4 c.C1555T p.R519X . . . ZNF253 56242 broad.mit.edu 36 19 19863857 19863857 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_021047 exon4 c.A801C p.R267R . . . ZNF93 81931 broad.mit.edu 36 19 19905592 19905592 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031218 exon4 c.G828T p.K276N . . . MKNK2 2872 broad.mit.edu 36 19 1992073 1992073 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017572 exon12 c.C1076T p.A359V . . . ZNF486 90649 broad.mit.edu 36 19 20169252 20169252 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_052852 exon4 c.A733G p.K245E . . . ZNF626 199777 broad.mit.edu 36 19 20599189 20599189 + Missense_Mutation SNP C A A rs4809075 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076675 exon4 c.G1334T p.R445I . . . ZNF85 7639 broad.mit.edu 36 19 20924501 20924501 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003429 exon4 c.T1341G p.I447M . . . ZNF430 80264 broad.mit.edu 36 19 21032105 21032105 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001172671 exon5 c.G1148A p.R383Q . . . ZNF714 148206 broad.mit.edu 36 19 21092540 21092540 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182515 exon5 c.C1230A p.N410K . . . ZNF431 170959 broad.mit.edu 36 19 21141013 21141013 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133473 exon3 c.C132A p.F44L . . . ZNF431 170959 broad.mit.edu 36 19 21158373 21158373 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133473 exon5 c.G1427T p.R476I . . . ZNF708 7562 broad.mit.edu 36 19 21269303 21269303 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021269 exon4 c.G305A p.R102K . . . ZNF493 284443 broad.mit.edu 36 19 21397933 21397933 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175910 exon2 c.G248A p.R83Q . . . ZNF493 284443 broad.mit.edu 36 19 21399413 21399413 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175910 exon2 c.G1728T p.K576N . . . ZNF429 353088 broad.mit.edu 36 19 21511078 21511078 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001415 exon4 c.G383T p.G128V . . . ZNF429 353088 broad.mit.edu 36 19 21511852 21511852 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001415 exon4 c.G1157A p.R386Q . . . ZNF43 7594 broad.mit.edu 36 19 21783410 21783410 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003423 exon4 c.G1269T p.E423D . . . ZNF208 7757 broad.mit.edu 36 19 21946262 21946262 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007153 exon4 c.G3414T p.E1138D . . . ZNF208 7757 broad.mit.edu 36 19 21946866 21946866 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_007153 exon4 c.A2810G p.K937R . . . ZNF208 7757 broad.mit.edu 36 19 21947197 21947197 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007153 exon4 c.C2479A p.H827N . . . ZNF208 7757 broad.mit.edu 36 19 21947466 21947466 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007153 exon4 c.C2210A p.T737N . . . ZNF208 7757 broad.mit.edu 36 19 21947561 21947561 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007153 exon4 c.C2115A p.S705S . . . ZNF208 7757 broad.mit.edu 36 19 21949057 21949057 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007153 exon4 c.G619A p.G207S . . . ZNF257 113835 broad.mit.edu 36 19 22063154 22063154 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033468 exon4 c.G762T p.E254D . . . ZNF257 113835 broad.mit.edu 36 19 22063222 22063222 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033468 exon4 c.G830T p.R277I . . . ZNF257 113835 broad.mit.edu 36 19 22063357 22063357 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033468 exon4 c.G965A p.G322D . . . ZNF257 113835 broad.mit.edu 36 19 22063996 22063996 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033468 exon4 c.G1604T p.R535I . . . ZNF676 163223 broad.mit.edu 36 19 22154918 22154918 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001411 exon3 c.G1441T p.E481X . . . ZNF98 148198 broad.mit.edu 36 19 22366383 22366383 + Silent SNP A C C rs74169607 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001098626 exon4 c.T1494G p.A498A . . . ZNF98 148198 broad.mit.edu 36 19 22377476 22377476 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098626 exon3 c.G208T p.E70X . . . ZNF98 148198 broad.mit.edu 36 19 22378119 22378119 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098626 exon2 c.C66T p.F22F . . . ZNF492 57615 broad.mit.edu 36 19 22639397 22639397 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020855 exon4 c.G1086T p.E362D . . . ZNF492 57615 broad.mit.edu 36 19 22639785 22639785 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020855 exon4 c.C1474T p.L492F . . . ZNF99 7652 broad.mit.edu 36 19 22730897 22730897 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080409 exon8 c.C3061A p.L1021I . . . ZNF99 7652 broad.mit.edu 36 19 22734066 22734066 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080409 exon4 c.G548T p.R183I . . . ZNF99 7652 broad.mit.edu 36 19 22734210 22734210 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080409 exon4 c.G404T p.R135I . . . ZNF91 7644 broad.mit.edu 36 19 23334965 23334965 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003430 exon4 c.G2656T p.E886X . . . ZNF91 7644 broad.mit.edu 36 19 23336596 23336596 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003430 exon4 c.G1025T p.R342I . . . ZNF254 9534 broad.mit.edu 36 19 24081248 24081248 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203282 exon3 c.G216A p.W72X . . . ZNF254 9534 broad.mit.edu 36 19 24102148 24102148 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_203282 exon4 c.C1506A p.S502S . . . MIER2 54531 broad.mit.edu 36 19 259859 259859 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017550 exon11 c.G1051A p.D351N . . . MIER2 54531 broad.mit.edu 36 19 277596 277596 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017550 exon6 c.C496T p.R166C . . . ZNF554 115196 broad.mit.edu 36 19 2785264 2785264 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001102651 exon5 c.G1031T p.R344I . . . ZNF554 115196 broad.mit.edu 36 19 2785684 2785684 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001102651 exon5 c.G1451T p.R484I . . . ZNF555 148254 broad.mit.edu 36 19 2804045 2804045 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001172775 exon4 c.C979T p.R327X . . . ZNF555 148254 broad.mit.edu 36 19 2804297 2804297 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001172775 exon4 c.C1231T p.R411X . . . ZNF556 80032 broad.mit.edu 36 19 2829237 2829237 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024967 exon4 c.C1281T p.C427C . . . ZNF57 126295 broad.mit.edu 36 19 2866584 2866584 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173480 exon2 c.C68A p.S23Y . . . ZNF77 58492 broad.mit.edu 36 19 2885713 2885713 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021217 exon4 c.G412A p.E138K . . . ZNF77 58492 broad.mit.edu 36 19 2887570 2887570 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021217 exon3 c.G263T p.R88I . . . TLE6 79816 broad.mit.edu 36 19 2938915 2938915 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143986 exon10 c.C645A p.A215A . . . UQCRFS1 7386 broad.mit.edu 36 19 34390712 34390712 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006003 exon2 c.C408T p.F136F . . . CCNE1 898 broad.mit.edu 36 19 35003520 35003520 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_057182 exon5 c.G489A p.A163A . . . C19orf2 8725 broad.mit.edu 36 19 35188445 35188445 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003796 exon6 c.C507T p.F169F . . . C19orf2 8725 broad.mit.edu 36 19 35191788 35191788 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003796 exon8 c.G723A p.T241T . . . C19orf2 8725 broad.mit.edu 36 19 35195091 35195091 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003796 exon10 c.G1238A p.R413Q . . . TSHZ3 57616 broad.mit.edu 36 19 36461117 36461117 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020856 exon2 c.C1422T p.V474V . . . TSHZ3 57616 broad.mit.edu 36 19 36462245 36462245 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020856 exon2 c.G294A p.E98E . . . PDCD5 9141 broad.mit.edu 36 19 37768608 37768608 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004708 exon4 c.G213T p.E71D . . . ANKRD27 84079 broad.mit.edu 36 19 37829283 37829283 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032139 exon4 c.G292T p.E98X . . . SLC7A9 11136 broad.mit.edu 36 19 38044935 38044935 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001126335 exon6 c.C633T p.F211F . . . CCDC123 84902 broad.mit.edu 36 19 38098137 38098137 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032816 exon14 c.C1511T p.S504L . . . RHPN2 85415 broad.mit.edu 36 19 38178790 38178790 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033103 exon11 c.G1402A p.D468N . . . GPATCH1 55094 broad.mit.edu 36 19 38276251 38276251 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018025 exon4 c.C441A p.L147L . . . WDR88 126248 broad.mit.edu 36 19 38331544 38331544 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173479 exon5 c.C567T p.I189I . . . ATCAY 85300 broad.mit.edu 36 19 3861853 3861853 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033064 exon8 c.C832T p.R278W . . . PEPD 5184 broad.mit.edu 36 19 38660833 38660833 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001166057 exon5 c.C315T p.F105F . . . CHST8 64377 broad.mit.edu 36 19 38955560 38955560 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001127895 exon5 c.G1027A p.D343N . . . GPI 2821 broad.mit.edu 36 19 39582486 39582486 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000175 exon17 c.C1497T p.F499F . . . SCGBL 284402 broad.mit.edu 36 19 39777070 39777070 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025591 exon2 c.G96A p.A32A . . . ZNF599 148103 broad.mit.edu 36 19 39941816 39941816 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007248 exon4 c.C1730T p.S577L . . . ZNF599 148103 broad.mit.edu 36 19 39942152 39942152 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001007248 exon4 c.T1394C p.V465A . . . ZNF599 148103 broad.mit.edu 36 19 39942325 39942325 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007248 exon4 c.C1221T p.R407R . . . ZNF599 148103 broad.mit.edu 36 19 39943160 39943160 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007248 exon4 c.A386C p.K129T . . . ZNF30 90075 broad.mit.edu 36 19 40114624 40114624 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001099437 exon3 c.T47A p.F16Y . . . ZNF30 90075 broad.mit.edu 36 19 40126068 40126068 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099437 exon5 c.C361T p.R121C . . . ZNF792 126375 broad.mit.edu 36 19 40140912 40140912 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175872 exon4 c.G1687A p.E563K . . . HPN 3249 broad.mit.edu 36 19 40243413 40243413 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002151 exon10 c.C663T p.A221A . . . HAMP 57817 broad.mit.edu 36 19 40467696 40467696 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021175 exon3 c.C166T p.R56X . . . MAG 4099 broad.mit.edu 36 19 40483075 40483075 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199216 exon6 c.G823T p.D275Y . . . MAG 4099 broad.mit.edu 36 19 40493300 40493300 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199216 exon9 c.G1455A p.M485I . . . MAG 4099 broad.mit.edu 36 19 40494736 40494736 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199216 exon10 c.C1617T p.I539I . . . CD22 933 broad.mit.edu 36 19 40515349 40515349 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001185100 exon3 c.C94A p.L32I . . . CD22 933 broad.mit.edu 36 19 40518879 40518879 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185100 exon4 c.G513A p.P171P . . . FFAR2 2867 broad.mit.edu 36 19 40632669 40632669 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005306 exon1 c.G213A p.S71S . . . FFAR2 2867 broad.mit.edu 36 19 40632822 40632822 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005306 exon1 c.G366A p.R122R . . . FFAR2 2867 broad.mit.edu 36 19 40633365 40633365 + Silent SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005306 exon1 c.C909G p.G303G . . . DMKN 93099 broad.mit.edu 36 19 40683280 40683280 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033317 exon12 c.G1282A p.D428N . . . RBM42 79171 broad.mit.edu 36 19 40817061 40817061 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024321 exon8 c.C1081T p.R361C . . . ZBTB32 27033 broad.mit.edu 36 19 40897775 40897775 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014383 exon2 c.G407T p.R136M . . . MLL4 9757 broad.mit.edu 36 19 40919440 40919440 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014727 exon31 c.C7169T p.S2390L . . . C19orf55 148137 broad.mit.edu 36 19 40947667 40947667 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039887 exon6 c.C616T p.L206F . . . NPHS1 4868 broad.mit.edu 36 19 41009360 41009360 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004646 exon29 c.G3622T p.D1208Y . . . NPHS1 4868 broad.mit.edu 36 19 41026258 41026258 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004646 exon17 c.G2290A p.D764N . . . TYROBP 7305 broad.mit.edu 36 19 41090486 41090486 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003332 exon2 c.C80A p.A27D . . . CREB3L3 84699 broad.mit.edu 36 19 4122432 4122432 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032607 exon9 c.G1028A p.G343D . . . CREB3L3 84699 broad.mit.edu 36 19 4122821 4122821 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032607 exon10 c.C1241T p.S414L . . . WDR62 284403 broad.mit.edu 36 19 41267420 41267420 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001083961 exon12 c.G1576A p.E526K . . . ZNF565 147929 broad.mit.edu 36 19 41365287 41365287 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152477 exon5 c.C1421T p.P474L . . . ZNF565 147929 broad.mit.edu 36 19 41377045 41377045 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152477 exon4 c.C162T p.V54V . . . ZFP14 57677 broad.mit.edu 36 19 41523069 41523069 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020917 exon5 c.G1499T p.R500I . . . ZFP14 57677 broad.mit.edu 36 19 41523415 41523415 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020917 exon5 c.C1153T p.R385C . . . ZFP14 57677 broad.mit.edu 36 19 41524021 41524021 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020917 exon5 c.C547T p.R183C . . . ZFP82 284406 broad.mit.edu 36 19 41575659 41575659 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133466 exon5 c.G1423A p.E475K . . . ZFP82 284406 broad.mit.edu 36 19 41590718 41590718 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133466 exon3 c.C47A p.S16Y . . . ZNF260 339324 broad.mit.edu 36 19 41697880 41697880 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001166037 exon3 c.A101C p.K34T . . . ZNF529 57711 broad.mit.edu 36 19 41730442 41730442 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145649 exon6 c.C858A p.F286L . . . ZNF382 84911 broad.mit.edu 36 19 41809838 41809838 + Missense_Mutation SNP G A A rs4439880 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032825 exon5 c.G1199A p.R400K . . . ZNF382 84911 broad.mit.edu 36 19 41810006 41810006 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032825 exon5 c.G1367T p.R456I . . . ZNF790 388536 broad.mit.edu 36 19 42001540 42001540 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206894 exon5 c.C1546A p.L516I . . . ZNF790 388536 broad.mit.edu 36 19 42001659 42001659 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_206894 exon5 c.G1427A p.R476K . . . ZNF790 388536 broad.mit.edu 36 19 42001782 42001782 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_206894 exon5 c.C1304T p.S435L . . . ZNF790 388536 broad.mit.edu 36 19 42002122 42002122 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_206894 exon5 c.C964T p.R322X . . . ZNF790 388536 broad.mit.edu 36 19 42002243 42002243 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_206894 exon5 c.T843G p.S281S . . . ZNF790 388536 broad.mit.edu 36 19 42006426 42006426 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206894 exon3 c.G116T p.S39I . . . ZNF345 25850 broad.mit.edu 36 19 42059901 42059901 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003419 exon3 c.G329T p.R110I . . . ZNF345 25850 broad.mit.edu 36 19 42060573 42060573 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003419 exon3 c.G1001T p.R334I . . . ZNF345 25850 broad.mit.edu 36 19 42060759 42060759 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003419 exon3 c.G1187T p.R396I . . . ZNF829 374899 broad.mit.edu 36 19 42074437 42074437 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037232 exon6 c.G1096A p.E366K . . . ZNF829 374899 broad.mit.edu 36 19 42074840 42074840 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037232 exon6 c.G693A p.Q231Q . . . ZNF829 374899 broad.mit.edu 36 19 42075106 42075106 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001037232 exon6 c.C427A p.L143I . . . ZNF829 374899 broad.mit.edu 36 19 42091078 42091078 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037232 exon4 c.G220T p.V74L . . . ZNF829 374899 broad.mit.edu 36 19 42091171 42091171 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037232 exon4 c.G127T p.D43Y . . . ZNF568 374900 broad.mit.edu 36 19 42119561 42119561 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198539 exon5 c.G209T p.R70I . . . ZNF568 374900 broad.mit.edu 36 19 42132344 42132344 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_198539 exon7 c.A449G p.E150G . . . ZNF568 374900 broad.mit.edu 36 19 42133308 42133308 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198539 exon7 c.G1413T p.E471D . . . ZNF568 374900 broad.mit.edu 36 19 42133596 42133596 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198539 exon7 c.C1701A p.F567L . . . ZNF420 147923 broad.mit.edu 36 19 42311285 42311285 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144689 exon5 c.C1552A p.L518I . . . ZNF420 147923 broad.mit.edu 36 19 42311721 42311721 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144689 exon5 c.G1988T p.R663I . . . ZNF585A 199704 broad.mit.edu 36 19 42334467 42334467 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199126 exon6 c.A2009C p.K670T . . . ZNF585B 92285 broad.mit.edu 36 19 42368423 42368423 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152279 exon5 c.C1856A p.S619Y . . . ZNF585B 92285 broad.mit.edu 36 19 42369226 42369226 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152279 exon5 c.G1053T p.E351D . . . ZNF585B 92285 broad.mit.edu 36 19 42369313 42369313 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152279 exon5 c.A966C p.R322S . . . ZNF585B 92285 broad.mit.edu 36 19 42369396 42369396 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152279 exon5 c.G883T p.E295X . . . TMIGD2 126259 broad.mit.edu 36 19 4249048 4249048 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001169126 exon2 c.C341T p.A114V . . . HKR1 284459 broad.mit.edu 36 19 42545515 42545515 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181786 exon6 c.G978T p.E326D . . . HKR1 284459 broad.mit.edu 36 19 42546224 42546224 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181786 exon6 c.C1687T p.R563W . . . FSD1 79187 broad.mit.edu 36 19 4256965 4256965 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024333 exon2 c.A38C p.K13T . . . ZNF569 148266 broad.mit.edu 36 19 42595355 42595355 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152484 exon6 c.G2045T p.R682I . . . ZNF569 148266 broad.mit.edu 36 19 42596363 42596363 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152484 exon6 c.G1037T p.R346I . . . ZNF569 148266 broad.mit.edu 36 19 42596813 42596813 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152484 exon6 c.A587C p.N196T . . . ZNF570 148268 broad.mit.edu 36 19 42667077 42667077 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144694 exon5 c.G713A p.R238K . . . ZNF570 148268 broad.mit.edu 36 19 42667345 42667345 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144694 exon5 c.G981T p.E327D . . . ZNF570 148268 broad.mit.edu 36 19 42667595 42667595 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144694 exon5 c.G1231T p.E411X . . . ZNF793 390927 broad.mit.edu 36 19 42720298 42720298 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013659 exon8 c.G898T p.E300X . . . ZNF571 51276 broad.mit.edu 36 19 42748442 42748442 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016536 exon4 c.G728T p.R243I . . . STAP2 55620 broad.mit.edu 36 19 4278184 4278184 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013841 exon8 c.G700A p.V234M . . . ZNF540 163255 broad.mit.edu 36 19 42794569 42794569 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152606 exon5 c.C548A p.S183Y . . . ZNF540 163255 broad.mit.edu 36 19 42795543 42795543 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152606 exon5 c.T1522G p.F508V . . . ZNF540 163255 broad.mit.edu 36 19 42795906 42795906 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152606 exon5 c.C1885A p.H629N . . . ZFP30 22835 broad.mit.edu 36 19 42817741 42817741 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014898 exon6 c.G1541A p.R514Q . . . ZNF781 163115 broad.mit.edu 36 19 42852145 42852145 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152605 exon4 c.G745T p.E249X . . . ZNF607 84775 broad.mit.edu 36 19 42880794 42880794 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032689 exon5 c.G2078T p.R693I . . . ZNF607 84775 broad.mit.edu 36 19 42881046 42881046 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032689 exon5 c.G1826T p.R609I . . . ZNF607 84775 broad.mit.edu 36 19 42881549 42881549 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032689 exon5 c.A1323C p.R441S . . . ZNF607 84775 broad.mit.edu 36 19 42881870 42881870 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032689 exon5 c.G1002T p.E334D . . . ZNF607 84775 broad.mit.edu 36 19 42882304 42882304 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032689 exon5 c.A568C p.K190Q . . . ZNF607 84775 broad.mit.edu 36 19 42892549 42892549 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032689 exon3 c.C24T p.F8F . . . ZNF573 126231 broad.mit.edu 36 19 42922138 42922138 + Nonsense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001172691 exon5 c.A1087T p.K363X . . . SPINT2 10653 broad.mit.edu 36 19 43472717 43472717 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001166103 exon4 c.G339T p.K113N . . . GGN 199720 broad.mit.edu 36 19 43568942 43568942 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152657 exon3 c.C800T p.S267L . . . FAM98C 147965 broad.mit.edu 36 19 43589429 43589429 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_174905 exon7 c.C790T p.R264X . . . RASGRP4 115727 broad.mit.edu 36 19 43593680 43593680 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001146206 exon12 c.A1200T p.E400D . . . CHAF1A 10036 broad.mit.edu 36 19 4360115 4360115 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005483 exon3 c.G319A p.E107K . . . RYR1 6261 broad.mit.edu 36 19 43635398 43635398 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042723 exon13 c.C1344A p.I448I . . . RYR1 6261 broad.mit.edu 36 19 43648856 43648856 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042723 exon24 c.C3156T p.I1052I . . . RYR1 6261 broad.mit.edu 36 19 43755663 43755663 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042723 exon95 c.C13990A p.L4664M . . . MAP4K1 11184 broad.mit.edu 36 19 43793781 43793781 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042600 exon10 c.C670A p.L224I . . . CHAF1A 10036 broad.mit.edu 36 19 4383007 4383007 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_005483 exon12 c.A2006G p.D669G . . . ACTN4 81 broad.mit.edu 36 19 43906530 43906530 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004924 exon14 c.C1665A p.F555L . . . ZFP36 7538 broad.mit.edu 36 19 44590894 44590894 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003407 exon2 c.C696A p.F232L . . . PLEKHG2 64857 broad.mit.edu 36 19 44607067 44607067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022835 exon19 c.C3454A p.L1152I . . . SUPT5H 6829 broad.mit.edu 36 19 44652630 44652630 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003169 exon16 c.G1406T p.R469I . . . TIMM50 92609 broad.mit.edu 36 19 44668177 44668177 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001563 exon6 c.G691A p.E231K . . . TIMM50 92609 broad.mit.edu 36 19 44668766 44668766 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001563 exon7 c.G901A p.G301S . . . CLC 1178 broad.mit.edu 36 19 44913904 44913904 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001828 exon4 c.G385T p.D129Y . . . FCGBP 8857 broad.mit.edu 36 19 45058091 45058091 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003890 exon30 c.C13983A p.S4661S . . . SEMA6B 10501 broad.mit.edu 36 19 4507998 4507998 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032108 exon5 c.G334A p.D112N . . . FCGBP 8857 broad.mit.edu 36 19 45084031 45084031 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003890 exon17 c.A8195C p.E2732A . . . FCGBP 8857 broad.mit.edu 36 19 45122160 45122160 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003890 exon3 c.G1623A p.S541S . . . PSMC4 5704 broad.mit.edu 36 19 45178083 45178083 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153001 exon9 c.G876T p.R292R . . . ZNF546 339327 broad.mit.edu 36 19 45203852 45203852 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178544 exon4 c.C94A p.L32I . . . ZNF546 339327 broad.mit.edu 36 19 45211727 45211727 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178544 exon7 c.G710T p.R237I . . . ZNF546 339327 broad.mit.edu 36 19 45211865 45211865 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178544 exon7 c.G848T p.R283I . . . ZNF546 339327 broad.mit.edu 36 19 45212381 45212381 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_178544 exon7 c.A1364G p.E455G . . . ZNF546 339327 broad.mit.edu 36 19 45212602 45212602 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178544 exon7 c.G1585A p.E529K . . . ZNF780B 163131 broad.mit.edu 36 19 45233668 45233668 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005851 exon5 c.C938T p.A313V . . . ZNF780A 284323 broad.mit.edu 36 19 45272657 45272657 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142578 exon6 c.G1532T p.R511I . . . ZNF780A 284323 broad.mit.edu 36 19 45273300 45273300 + Nonsense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001142578 exon6 c.A889T p.K297X . . . AKT2 208 broad.mit.edu 36 19 45432840 45432840 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001626 exon13 c.G1318A p.D440N . . . RAB4B 53916 broad.mit.edu 36 19 45978181 45978181 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016154 exon3 c.T149C p.V50A . . . CYP2A6 1548 broad.mit.edu 36 19 46041644 46041644 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000762 exon9 c.G1382A p.R461H . . . CYP2A6 1548 broad.mit.edu 36 19 46048091 46048091 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000762 exon1 c.G81T p.R27S . . . CYP2A13 1553 broad.mit.edu 36 19 46286386 46286386 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000766 exon1 c.C170T p.S57F . . . CYP2F1 1572 broad.mit.edu 36 19 46322484 46322484 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000774 exon8 c.G985A p.D329N . . . AXL 558 broad.mit.edu 36 19 46418423 46418423 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_021913 exon2 c.A128C p.N43T . . . AXL 558 broad.mit.edu 36 19 46457416 46457416 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021913 exon20 c.G2452A p.E818K . . . CCDC97 90324 broad.mit.edu 36 19 46517573 46517573 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052848 exon3 c.G757A p.E253K . . . CEACAM21 90273 broad.mit.edu 36 19 46783657 46783657 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033543 exon5 c.C816A p.F272L . . . CEACAM4 1089 broad.mit.edu 36 19 46823871 46823871 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001817 exon2 c.G368A p.R123Q . . . CEACAM7 1087 broad.mit.edu 36 19 46882824 46882824 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006890 exon2 c.G233A p.R78Q . . . CEACAM5 1048 broad.mit.edu 36 19 46916828 46916828 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004363 exon8 c.C1918A p.L640I . . . ATP1A3 478 broad.mit.edu 36 19 47163277 47163277 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152296 exon22 c.G2977A p.E993K . . . ATP1A3 478 broad.mit.edu 36 19 47181372 47181372 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152296 exon7 c.G650A p.R217H . . . GRIK5 2901 broad.mit.edu 36 19 47238735 47238735 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002088 exon11 c.G1282A p.V428I . . . POU2F2 5452 broad.mit.edu 36 19 47291579 47291579 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002698 exon10 c.C864A p.I288I . . . POU2F2 5452 broad.mit.edu 36 19 47291882 47291882 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002698 exon9 c.G655T p.D219Y . . . POU2F2 5452 broad.mit.edu 36 19 47295593 47295593 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002698 exon7 c.A427C p.N143H . . . DEDD2 162989 broad.mit.edu 36 19 47395445 47395445 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133328 exon5 c.G966A p.P322P . . . FEM1A 55527 broad.mit.edu 36 19 4744084 4744084 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018708 exon1 c.C1218T p.F406F . . . ERF 2077 broad.mit.edu 36 19 47446415 47446415 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006494 exon2 c.C165T p.F55F . . . MEGF8 1954 broad.mit.edu 36 19 47546176 47546176 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001410 exon14 c.T2335C p.S779P . . . MEGF8 1954 broad.mit.edu 36 19 47546349 47546349 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001410 exon14 c.G2508T p.E836D . . . MEGF8 1954 broad.mit.edu 36 19 47558507 47558507 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001410 exon33 c.C5775T p.S1925S . . . PSG8 440533 broad.mit.edu 36 19 47951068 47951068 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130168 exon3 c.C534A p.V178V . . . PSG1 5669 broad.mit.edu 36 19 48064154 48064154 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006905 exon5 c.C1182T p.C394C . . . PSG11 5680 broad.mit.edu 36 19 48211145 48211145 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_203287 exon3 c.C561T p.G187G . . . PSG9 5678 broad.mit.edu 36 19 48463963 48463963 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002784 exon2 c.G243A p.S81S . . . PLAUR 5329 broad.mit.edu 36 19 48844906 48844906 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005377 exon6 c.G849T p.W283C . . . ZNF283 284349 broad.mit.edu 36 19 49044197 49044197 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181845 exon7 c.G1604T p.R535I . . . ZNF283 284349 broad.mit.edu 36 19 49044384 49044384 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181845 exon7 c.G1791T p.K597N . . . ZNF404 342908 broad.mit.edu 36 19 49069014 49069014 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033719 exon2 c.C1183A p.L395I . . . ZNF404 342908 broad.mit.edu 36 19 49069189 49069189 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033719 exon2 c.C1008T p.G336G . . . ZNF221 7638 broad.mit.edu 36 19 49160944 49160944 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013359 exon4 c.G84T p.E28D . . . ZNF221 7638 broad.mit.edu 36 19 49161888 49161888 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013359 exon6 c.G394T p.D132Y . . . ZNF221 7638 broad.mit.edu 36 19 49162161 49162161 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013359 exon6 c.G667T p.E223X . . . ZNF221 7638 broad.mit.edu 36 19 49162358 49162358 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013359 exon6 c.G864A p.G288G . . . ZNF222 7673 broad.mit.edu 36 19 49228060 49228060 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013360 exon4 c.C393T p.F131F . . . ZNF222 7673 broad.mit.edu 36 19 49228542 49228542 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013360 exon4 c.G875A p.R292K . . . ZNF222 7673 broad.mit.edu 36 19 49228616 49228616 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013360 exon4 c.G949T p.E317X . . . ZNF223 7766 broad.mit.edu 36 19 49262226 49262226 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013361 exon5 c.G405A p.E135E . . . ZNF284 342909 broad.mit.edu 36 19 49282155 49282155 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001037813 exon5 c.G684T p.E228D . . . ZNF284 342909 broad.mit.edu 36 19 49282953 49282953 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001037813 exon5 c.G1482T p.E494D . . . ZNF224 7767 broad.mit.edu 36 19 49302499 49302499 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013398 exon6 c.G346T p.D116Y . . . ZNF225 7768 broad.mit.edu 36 19 49327278 49327278 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013362 exon5 c.G671T p.R224I . . . ZNF225 7768 broad.mit.edu 36 19 49328304 49328304 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013362 exon5 c.G1697T p.R566I . . . ZNF227 7770 broad.mit.edu 36 19 49431391 49431391 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182490 exon6 c.C968A p.S323Y . . . ZNF233 353355 broad.mit.edu 36 19 49470467 49470467 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181756 exon5 c.C1814T p.S605L . . . ZFP112 7771 broad.mit.edu 36 19 49523816 49523816 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013380 exon4 c.G2334T p.K778N . . . ZNF285 26974 broad.mit.edu 36 19 49584008 49584008 + Missense_Mutation SNP C A A rs73039940 by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152354 exon4 c.G239T p.R80M . . . ZNF180 7733 broad.mit.edu 36 19 49673047 49673047 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013256 exon5 c.G1491A p.Q497Q . . . ZNF180 7733 broad.mit.edu 36 19 49673168 49673168 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013256 exon5 c.G1370T p.R457I . . . ZNF180 7733 broad.mit.edu 36 19 49673336 49673336 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013256 exon5 c.G1202T p.R401I . . . ZNF180 7733 broad.mit.edu 36 19 49673834 49673834 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013256 exon5 c.G704T p.S235I . . . CEACAM20 125931 broad.mit.edu 36 19 49721087 49721087 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001102597 exon2 c.C83A p.A28D . . . CKM 1158 broad.mit.edu 36 19 50502605 50502605 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001824 exon7 c.G921T p.K307N . . . PPM1N 147699 broad.mit.edu 36 19 50694295 50694295 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080401 exon1 c.C725T p.P242L . . . DMWD 1762 broad.mit.edu 36 19 50981655 50981655 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004943 exon3 c.C939T p.F313F . . . NOVA2 4858 broad.mit.edu 36 19 51135852 51135852 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002516 exon4 c.C588T p.I196I . . . HIF3A 64344 broad.mit.edu 36 19 51530011 51530011 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152795 exon14 c.C1840T p.L614L . . . PPP5C 5536 broad.mit.edu 36 19 51549034 51549034 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006247 exon2 c.C311A p.A104D . . . PNMAL1 55228 broad.mit.edu 36 19 51663651 51663651 + 3'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001103149 exon3 c.G1122A p.G374G . . . PNMAL2 57469 broad.mit.edu 36 19 51689774 51689774 + Silent SNP C T T rs35793066 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020709 exon1 c.G789A p.S263S . . . PNMAL2 57469 broad.mit.edu 36 19 51690149 51690149 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020709 exon1 c.G414T p.Q138H . . . STRN4 29888 broad.mit.edu 36 19 51933288 51933288 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039877 exon3 c.G433T p.E145X . . . GRLF1 2909 broad.mit.edu 36 19 52114461 52114461 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004491 exon1 c.C689T p.A230V . . . GRLF1 2909 broad.mit.edu 36 19 52114970 52114970 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004491 exon1 c.G1198A p.E400K . . . GRLF1 2909 broad.mit.edu 36 19 52116762 52116762 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004491 exon1 c.G2990A p.R997Q . . . GRLF1 2909 broad.mit.edu 36 19 52194450 52194450 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004491 exon5 c.G4086T p.K1362N . . . CCDC9 26093 broad.mit.edu 36 19 52466524 52466524 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015603 exon12 c.G1345T p.D449Y . . . C5AR1 728 broad.mit.edu 36 19 52515157 52515157 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001736 exon2 c.T282C p.R94R . . . GPR77 27202 broad.mit.edu 36 19 52536851 52536851 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018485 exon2 c.G955A p.E319K . . . NAPA 8775 broad.mit.edu 36 19 52688515 52688515 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003827 exon5 c.C390A p.I130I . . . EHD2 30846 broad.mit.edu 36 19 52911826 52911826 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014601 exon2 c.G145A p.A49T . . . EHD2 30846 broad.mit.edu 36 19 52920973 52920973 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014601 exon4 c.G595A p.E199K . . . GLTSCR2 29997 broad.mit.edu 36 19 52945262 52945262 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015710 exon3 c.G305T p.R102I . . . CRX 1406 broad.mit.edu 36 19 53034587 53034587 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000554 exon4 c.G451T p.G151C . . . CRX 1406 broad.mit.edu 36 19 53034906 53034906 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000554 exon4 c.G770T p.S257I . . . SULT2A1 6822 broad.mit.edu 36 19 53077202 53077202 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003167 exon3 c.G423T p.K141N . . . PLA2G4C 8605 broad.mit.edu 36 19 53301608 53301608 + 5'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001159322 exon2 c.G52A p.A18T . . . LIG1 3978 broad.mit.edu 36 19 53352096 53352096 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000234 exon5 c.G357A p.P119P . . . CARD8 22900 broad.mit.edu 36 19 53425879 53425879 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184902 exon9 c.G739A p.E247K . . . ZNF114 163071 broad.mit.edu 36 19 53477546 53477546 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153608 exon4 c.C116A p.S39Y . . . IZUMO1 284359 broad.mit.edu 36 19 53939536 53939536 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182575 exon4 c.G383A p.R128Q . . . FUT1 2523 broad.mit.edu 36 19 53945501 53945501 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000148 exon4 c.G850A p.D284N . . . FUT1 2523 broad.mit.edu 36 19 53945963 53945963 + Missense_Mutation SNP C T T rs56217834 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000148 exon4 c.G388A p.V130M . . . PLEKHA4 57664 broad.mit.edu 36 19 54056557 54056557 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020904 exon5 c.G279T p.E93D . . . ZNRF4 148066 broad.mit.edu 36 19 5406803 5406803 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_181710 exon1 c.C301T p.R101W . . . PPP1R15A 23645 broad.mit.edu 36 19 54069665 54069665 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014330 exon2 c.G1363A p.D455N . . . TULP2 7288 broad.mit.edu 36 19 54083283 54083283 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003323 exon8 c.G684A p.T228T . . . NUCB1 4924 broad.mit.edu 36 19 54095887 54095887 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006184 exon2 c.G22T p.G8X . . . GYS1 2997 broad.mit.edu 36 19 54177389 54177389 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002103 exon7 c.G997T p.E333X . . . SNRNP70 6625 broad.mit.edu 36 19 54281624 54281624 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003089 exon2 c.G141T p.E47D . . . SNRNP70 6625 broad.mit.edu 36 19 54285367 54285367 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003089 exon3 c.G155A p.R52Q . . . SLC6A16 28968 broad.mit.edu 36 19 54488306 54488306 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014037 exon10 c.C1764A p.A588A . . . SLC6A16 28968 broad.mit.edu 36 19 54504005 54504005 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014037 exon7 c.C1169A p.S390Y . . . TEAD2 8463 broad.mit.edu 36 19 54550420 54550420 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003598 exon5 c.G429A p.A143A . . . DKKL1 27120 broad.mit.edu 36 19 54560712 54560712 + Silent SNP C T T rs34625472 by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001197301 exon3 c.C318T p.I106I . . . PIH1D1 55011 broad.mit.edu 36 19 54643108 54643108 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017916 exon4 c.G361A p.D121N . . . TSKS 60385 broad.mit.edu 36 19 54936956 54936956 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021733 exon9 c.C1495A p.L499M . . . TSKS 60385 broad.mit.edu 36 19 54939389 54939389 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021733 exon8 c.C1272T p.F424F . . . IL4I1 259307 broad.mit.edu 36 19 55086480 55086480 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152899 exon6 c.G630A p.T210T . . . IL4I1 259307 broad.mit.edu 36 19 55090963 55090963 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152899 exon3 c.A173G p.K58R . . . NUP62 23636 broad.mit.edu 36 19 55103512 55103512 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012346 exon2 c.C1365T p.I455I . . . SIGLEC11 114132 broad.mit.edu 36 19 55147386 55147386 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135163 exon8 c.T1441C p.S481P . . . SIGLEC11 114132 broad.mit.edu 36 19 55154116 55154116 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001135163 exon6 c.C1088T p.S363F . . . ZNF473 25888 broad.mit.edu 36 19 55241460 55241460 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001006656 exon5 c.G1948A p.E650K . . . SAFB2 9667 broad.mit.edu 36 19 5543762 5543762 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014649 exon16 c.G2344A p.D782N . . . MYH14 79784 broad.mit.edu 36 19 55476785 55476785 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077186 exon32 c.G4314T p.E1438D . . . SAFB2 9667 broad.mit.edu 36 19 5555628 5555628 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014649 exon11 c.G1525A p.D509N . . . NAPSA 9476 broad.mit.edu 36 19 55557268 55557268 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004851 exon2 c.C198A p.I66I . . . SAFB2 9667 broad.mit.edu 36 19 5564529 5564529 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014649 exon5 c.G553T p.E185X . . . MYBPC2 4606 broad.mit.edu 36 19 55656640 55656640 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004533 exon25 c.G2961A p.R987R . . . KLK2 3817 broad.mit.edu 36 19 56071732 56071732 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002231 exon3 c.A399C p.T133T . . . KLK4 9622 broad.mit.edu 36 19 56103706 56103706 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004917 exon3 c.C416T p.S139L . . . KLK6 5653 broad.mit.edu 36 19 56158605 56158605 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012964 exon4 c.C210A p.V70V . . . KLK12 43849 broad.mit.edu 36 19 56229674 56229674 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145894 exon2 c.T16G p.F6V . . . KLK13 26085 broad.mit.edu 36 19 56251703 56251703 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015596 exon5 c.C787T p.R263X . . . KLK13 26085 broad.mit.edu 36 19 56251797 56251797 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015596 exon5 c.C693T p.I231I . . . SIGLEC9 27180 broad.mit.edu 36 19 56320908 56320908 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198558 exon2 c.G664T p.V222L . . . SIGLEC7 27036 broad.mit.edu 36 19 56337772 56337772 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014385 exon1 c.G334A p.D112N . . . SIGLEC7 27036 broad.mit.edu 36 19 56341852 56341852 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014385 exon5 c.C1057T p.L353L . . . SIGLEC7 27036 broad.mit.edu 36 19 56348203 56348203 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014385 exon7 c.G1293A p.E431E . . . LIM2 3982 broad.mit.edu 36 19 56575607 56575607 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001161748 exon4 c.C424T p.L142L . . . SIGLEC10 89790 broad.mit.edu 36 19 56612214 56612214 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171157 exon2 c.C355T p.R119W . . . SIGLEC8 27181 broad.mit.edu 36 19 56653392 56653392 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014442 exon1 c.G62T p.R21I . . . SIGLEC6 946 broad.mit.edu 36 19 56724941 56724941 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001245 exon5 c.C861T p.F287F . . . ZNF175 7728 broad.mit.edu 36 19 56782086 56782086 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_007147 exon5 c.T690C p.G230G . . . SIGLEC5 8778 broad.mit.edu 36 19 56807375 56807375 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003830 exon9 c.C1577A p.S526Y . . . SIGLEC5 8778 broad.mit.edu 36 19 56823029 56823029 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003830 exon5 c.C867T p.N289N . . . HAS1 3036 broad.mit.edu 36 19 56914295 56914295 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001523 exon2 c.C678T p.L226L . . . TMEM146 257062 broad.mit.edu 36 19 5696965 5696965 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152784 exon9 c.C699T p.F233F . . . FPR3 2359 broad.mit.edu 36 19 57019055 57019055 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002030 exon2 c.G242A p.R81Q . . . TMEM146 257062 broad.mit.edu 36 19 5705252 5705252 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152784 exon13 c.C1274A p.P425H . . . ZNF577 84765 broad.mit.edu 36 19 57067764 57067764 + Missense_Mutation SNP G A A rs45526832 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032679 exon7 c.C1291T p.R431C . . . ZNF649 65251 broad.mit.edu 36 19 57086923 57086923 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_023074 exon5 c.A278G p.Q93R . . . ZNF350 59348 broad.mit.edu 36 19 57160862 57160862 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021632 exon5 c.C656A p.S219Y . . . ZNF615 284370 broad.mit.edu 36 19 57188882 57188882 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198480 exon6 c.G1259A p.R420Q . . . ZNF615 284370 broad.mit.edu 36 19 57189383 57189383 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198480 exon6 c.C758T p.T253I . . . ZNF614 80110 broad.mit.edu 36 19 57212000 57212000 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025040 exon5 c.T663G p.I221M . . . ZNF432 9668 broad.mit.edu 36 19 57229128 57229128 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014650 exon5 c.A1616G p.K539R . . . ZNF432 9668 broad.mit.edu 36 19 57229965 57229965 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014650 exon5 c.C779A p.S260Y . . . TMEM146 257062 broad.mit.edu 36 19 5727306 5727306 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152784 exon21 c.G2076A p.S692S . . . ZNF616 90317 broad.mit.edu 36 19 57310522 57310522 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178523 exon4 c.A1707C p.R569S . . . ZNF616 90317 broad.mit.edu 36 19 57311291 57311291 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178523 exon4 c.G938T p.R313I . . . ZNF616 90317 broad.mit.edu 36 19 57311405 57311405 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178523 exon4 c.G824A p.G275D . . . ZNF616 90317 broad.mit.edu 36 19 57311861 57311861 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178523 exon4 c.G368T p.R123I . . . ZNF836 162962 broad.mit.edu 36 19 57350943 57350943 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102657 exon5 c.G1805T p.R602I . . . ZNF766 90321 broad.mit.edu 36 19 57485828 57485828 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001010851 exon4 c.G972T p.E324D . . . ZNF610 162963 broad.mit.edu 36 19 57561412 57561412 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173530 exon6 c.G969A p.K323K . . . ZNF528 84436 broad.mit.edu 36 19 57610753 57610753 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032423 exon7 c.G836A p.R279Q . . . ZNF528 84436 broad.mit.edu 36 19 57611428 57611428 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032423 exon7 c.G1511A p.R504H . . . ZNF534 147658 broad.mit.edu 36 19 57633242 57633242 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001143939 exon4 c.G756T p.E252D . . . ZNF578 147660 broad.mit.edu 36 19 57706534 57706534 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099694 exon6 c.G1088T p.R363I . . . ZNF701 55762 broad.mit.edu 36 19 57778469 57778469 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018260 exon4 c.C1345T p.R449X . . . ZNF83 55769 broad.mit.edu 36 19 57808368 57808368 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105552 exon4 c.G1262T p.R421I . . . ZNF611 81856 broad.mit.edu 36 19 57900569 57900569 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161501 exon5 c.G1344T p.K448N . . . ZNF600 162966 broad.mit.edu 36 19 57962753 57962753 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198457 exon3 c.G68A p.R23K . . . ZNF28 7576 broad.mit.edu 36 19 57995041 57995041 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006969 exon4 c.A1869C p.I623I . . . ZNF320 162967 broad.mit.edu 36 19 58076061 58076061 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207333 exon4 c.G1130T p.R377I . . . ZNF816 125893 broad.mit.edu 36 19 58145128 58145128 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031665 exon5 c.C1712T p.A571V . . . ZNF816 125893 broad.mit.edu 36 19 58145668 58145668 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001031665 exon5 c.A1172G p.H391R . . . ZNF160 90338 broad.mit.edu 36 19 58264067 58264067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198893 exon7 c.G1532T p.C511F . . . ZNF160 90338 broad.mit.edu 36 19 58264499 58264499 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198893 exon7 c.A1100G p.K367R . . . ZNF160 90338 broad.mit.edu 36 19 58264602 58264602 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198893 exon7 c.C997T p.R333X . . . ZNF415 55786 broad.mit.edu 36 19 58303986 58303986 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001136038 exon4 c.A1124C p.Q375P . . . ZNF415 55786 broad.mit.edu 36 19 58304238 58304238 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136038 exon4 c.G872T p.R291L . . . ZNF415 55786 broad.mit.edu 36 19 58304447 58304447 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136038 exon4 c.C663T p.C221C . . . ZNF347 84671 broad.mit.edu 36 19 58335649 58335649 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001172675 exon5 c.G2247T p.Q749H . . . ZNF347 84671 broad.mit.edu 36 19 58336197 58336197 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001172675 exon5 c.G1699T p.E567X . . . ZNF665 79788 broad.mit.edu 36 19 58359705 58359705 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024733 exon4 c.G1850T p.R617I . . . ZNF665 79788 broad.mit.edu 36 19 58360201 58360201 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024733 exon4 c.C1354T p.H452Y . . . ZNF665 79788 broad.mit.edu 36 19 58370565 58370565 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024733 exon3 c.G87T p.Q29H . . . ZNF677 342926 broad.mit.edu 36 19 58432440 58432440 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182609 exon5 c.G1352T p.R451I . . . VN1R2 317701 broad.mit.edu 36 19 58454509 58454509 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173856 exon1 c.G1069A p.A357T . . . VN1R4 317703 broad.mit.edu 36 19 58461987 58461987 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173857 exon1 c.C744A p.L248L . . . ZNF765 91661 broad.mit.edu 36 19 58603156 58603156 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040185 exon4 c.G536T p.R179I . . . ZNF765 91661 broad.mit.edu 36 19 58603576 58603576 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040185 exon4 c.G956T p.R319I . . . ZNF761 388561 broad.mit.edu 36 19 58650241 58650241 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008401 exon6 c.C669T p.S223S . . . ZNF813 126017 broad.mit.edu 36 19 58685463 58685463 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004301 exon4 c.G165T p.M55I . . . ZNF813 126017 broad.mit.edu 36 19 58685837 58685837 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004301 exon4 c.T539G p.I180S . . . ZNF813 126017 broad.mit.edu 36 19 58686033 58686033 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004301 exon4 c.T735G p.C245W . . . ZNF813 126017 broad.mit.edu 36 19 58687110 58687110 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004301 exon4 c.G1812T p.E604D . . . ZNF331 55422 broad.mit.edu 36 19 58771765 58771765 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001079906 exon6 c.T139C p.L47L . . . ZNF331 55422 broad.mit.edu 36 19 58772990 58772990 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001079906 exon6 c.G1364A p.R455Q . . . NLRP12 91662 broad.mit.edu 36 19 58989154 58989154 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144687 exon10 c.G3147A p.A1049A . . . NLRP12 91662 broad.mit.edu 36 19 59002639 59002639 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144687 exon4 c.G2165A p.R722Q . . . NLRP12 91662 broad.mit.edu 36 19 59005623 59005623 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144687 exon3 c.G1102A p.A368T . . . NLRP12 91662 broad.mit.edu 36 19 59006140 59006140 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144687 exon3 c.G585T p.K195N . . . NLRP12 91662 broad.mit.edu 36 19 59019075 59019075 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144687 exon1 c.A166C p.M56L . . . PRKCG 5582 broad.mit.edu 36 19 59079259 59079259 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002739 exon3 c.G235A p.E79K . . . CACNG6 59285 broad.mit.edu 36 19 59193330 59193330 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145815 exon2 c.C357A p.F119L . . . TMC4 147798 broad.mit.edu 36 19 59359292 59359292 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145303 exon8 c.G1271A p.R424H . . . RPS9 6203 broad.mit.edu 36 19 59396960 59396960 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001013 exon2 c.C96T p.I32I . . . LILRB3 11025 broad.mit.edu 36 19 59437914 59437914 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024318 exon3 c.G155A p.S52N . . . LILRB5 10990 broad.mit.edu 36 19 59448186 59448186 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001081442 exon10 c.C1513T p.P505S . . . LILRB5 10990 broad.mit.edu 36 19 59450993 59450993 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001081442 exon5 c.C920T p.A307V . . . LILRA5 353514 broad.mit.edu 36 19 59514708 59514708 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021250 exon5 c.G500T p.R167I . . . TTYH1 57348 broad.mit.edu 36 19 59634109 59634109 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005367 exon10 c.G1053T p.E351D . . . LENG9 94059 broad.mit.edu 36 19 59665526 59665526 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198988 exon1 c.C1062A p.F354L . . . RFX2 5990 broad.mit.edu 36 19 5967224 5967224 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000635 exon7 c.C656A p.S219Y . . . LAIR2 3904 broad.mit.edu 36 19 59711051 59711051 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002288 exon3 c.C204T p.Y68Y . . . LILRA2 11027 broad.mit.edu 36 19 59778046 59778046 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130917 exon4 c.G389A p.S130N . . . LILRB1 10859 broad.mit.edu 36 19 59836949 59836949 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001081639 exon8 c.C1310A p.S437Y . . . LILRB1 10859 broad.mit.edu 36 19 59837932 59837932 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001081639 exon10 c.C1389T p.I463I . . . LILRB1 10859 broad.mit.edu 36 19 59840059 59840059 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001081639 exon15 c.G1874A p.R625Q . . . KIR3DL1 3811 broad.mit.edu 36 19 60033533 60033533 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013289 exon9 c.C1326A p.S442S . . . NLRP7 199713 broad.mit.edu 36 19 60142423 60142423 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139176 exon4 c.G1576A p.A526T . . . NLRP7 199713 broad.mit.edu 36 19 60143311 60143311 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139176 exon4 c.G688T p.D230Y . . . NLRP7 199713 broad.mit.edu 36 19 60143594 60143594 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139176 exon4 c.G405T p.K135N . . . NLRP2 55655 broad.mit.edu 36 19 60180969 60180969 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001174083 exon5 c.C294T p.D98D . . . NLRP2 55655 broad.mit.edu 36 19 60200632 60200632 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174083 exon13 c.C2946A p.T982T . . . GP6 51206 broad.mit.edu 36 19 60218912 60218912 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016363 exon7 c.G726T p.E242D . . . PPP1R12C 54776 broad.mit.edu 36 19 60299325 60299325 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017607 exon8 c.G1059T p.K353N . . . PTPRH 5794 broad.mit.edu 36 19 60405250 60405250 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002842 exon6 c.G1139A p.R380Q . . . HSPBP1 23640 broad.mit.edu 36 19 60465831 60465831 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012267 exon8 c.A1037G p.Q346R . . . ZNF628 89887 broad.mit.edu 36 19 60684623 60684623 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033113 exon3 c.G239A p.R80Q . . . U2AF2 11338 broad.mit.edu 36 19 60871901 60871901 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007279 exon9 c.G876T p.K292N . . . NLRP9 338321 broad.mit.edu 36 19 60933059 60933059 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176820 exon3 c.G1944A p.A648A . . . NLRP9 338321 broad.mit.edu 36 19 60935206 60935206 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_176820 exon2 c.C1803A p.I601I . . . NLRP9 338321 broad.mit.edu 36 19 60935317 60935317 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176820 exon2 c.C1692A p.F564L . . . NLRP9 338321 broad.mit.edu 36 19 60936356 60936356 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_176820 exon2 c.C653T p.S218F . . . NLRP11 204801 broad.mit.edu 36 19 61021122 61021122 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145007 exon4 c.T231G p.R77R . . . ACSBG2 81616 broad.mit.edu 36 19 6102751 6102751 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030924 exon4 c.C331A p.L111M . . . NLRP4 147945 broad.mit.edu 36 19 61061829 61061829 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_134444 exon3 c.C1258T p.R420W . . . NLRP4 147945 broad.mit.edu 36 19 61061928 61061928 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_134444 exon3 c.G1357A p.V453M . . . NLRP13 126204 broad.mit.edu 36 19 61111014 61111014 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176810 exon7 c.T2403G p.I801M . . . NLRP13 126204 broad.mit.edu 36 19 61115423 61115423 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176810 exon5 c.G1572T p.K524N . . . NLRP13 126204 broad.mit.edu 36 19 61127835 61127835 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176810 exon3 c.G390T p.G130G . . . NLRP8 126205 broad.mit.edu 36 19 61159168 61159168 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176811 exon3 c.G1932A p.V644V . . . NLRP5 126206 broad.mit.edu 36 19 61207080 61207080 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_153447 exon2 c.A249G p.L83L . . . NLRP5 126206 broad.mit.edu 36 19 61230503 61230503 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153447 exon7 c.C1092T p.F364F . . . NLRP5 126206 broad.mit.edu 36 19 61231230 61231230 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153447 exon7 c.C1819A p.L607I . . . ACSBG2 81616 broad.mit.edu 36 19 6136583 6136583 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030924 exon11 c.G1459A p.D487N . . . ACSBG2 81616 broad.mit.edu 36 19 6138386 6138386 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030924 exon12 c.T1633C p.L545L . . . ZSCAN5B 342933 broad.mit.edu 36 19 61393405 61393405 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001080456 exon4 c.T1091G p.F364C . . . ZSCAN5A 79149 broad.mit.edu 36 19 61425068 61425068 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024303 exon5 c.C1179A p.F393L . . . ZSCAN5A 79149 broad.mit.edu 36 19 61425870 61425870 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024303 exon4 c.C641A p.S214Y . . . ZNF582 147948 broad.mit.edu 36 19 61587653 61587653 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144690 exon5 c.A945G p.E315E . . . ZNF582 147948 broad.mit.edu 36 19 61593190 61593190 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144690 exon4 c.T224A p.L75Q . . . ZNF583 147949 broad.mit.edu 36 19 61626534 61626534 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001159860 exon5 c.G695T p.R232I . . . ZNF583 147949 broad.mit.edu 36 19 61626812 61626812 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159860 exon5 c.G973A p.E325K . . . ZNF667 63934 broad.mit.edu 36 19 61644359 61644359 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022103 exon5 c.C1817A p.S606Y . . . ZNF471 57573 broad.mit.edu 36 19 61728093 61728093 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020813 exon5 c.G845T p.R282I . . . ZFP28 140612 broad.mit.edu 36 19 61757299 61757299 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020828 exon8 c.G1333T p.E445X . . . ZFP28 140612 broad.mit.edu 36 19 61757540 61757540 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020828 exon8 c.G1574T p.R525I . . . ZNF470 388566 broad.mit.edu 36 19 61780279 61780279 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001668 exon6 c.G670T p.E224X . . . ZNF470 388566 broad.mit.edu 36 19 61780457 61780457 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001668 exon6 c.C848A p.P283H . . . ZNF470 388566 broad.mit.edu 36 19 61780706 61780706 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001668 exon6 c.G1097T p.R366I . . . ZNF835 90485 broad.mit.edu 36 19 61867628 61867628 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005850 exon2 c.G817A p.E273K . . . ZIM2 23619 broad.mit.edu 36 19 61977902 61977902 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146326 exon12 c.C1550T p.S517F . . . ZIM2 23619 broad.mit.edu 36 19 61978663 61978663 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146326 exon12 c.G789T p.E263D . . . PEG3 5178 broad.mit.edu 36 19 62017252 62017252 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146186 exon7 c.G4370A p.G1457D . . . PEG3 5178 broad.mit.edu 36 19 62017945 62017946 + Nonsense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_001146186 exon7 c.3676_3677TA . . . . PEG3 5178 broad.mit.edu 36 19 62018304 62018304 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146186 exon7 c.C3318A p.I1106I . . . PEG3 5178 broad.mit.edu 36 19 62018454 62018454 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146186 exon7 c.G3168T p.E1056D . . . PEG3 5178 broad.mit.edu 36 19 62019058 62019058 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146186 exon7 c.C2564A p.S855Y . . . PEG3 5178 broad.mit.edu 36 19 62019297 62019297 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146186 exon7 c.G2325T p.E775D . . . USP29 57663 broad.mit.edu 36 19 62332098 62332098 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020903 exon4 c.C243A p.F81L . . . USP29 57663 broad.mit.edu 36 19 62332973 62332973 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020903 exon4 c.C1118T p.A373V . . . ZIM3 114026 broad.mit.edu 36 19 62338463 62338463 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052882 exon5 c.G1054A p.D352N . . . ZIM3 114026 broad.mit.edu 36 19 62339142 62339142 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052882 exon5 c.A375C p.K125N . . . ZNF264 9422 broad.mit.edu 36 19 62415643 62415643 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003417 exon4 c.G1366A p.E456K . . . AURKC 6795 broad.mit.edu 36 19 62435243 62435243 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003160 exon3 c.C33T p.I11I . . . AURKC 6795 broad.mit.edu 36 19 62438109 62438109 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003160 exon6 c.G528T p.M176I . . . ZNF460 10794 broad.mit.edu 36 19 62494645 62494645 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006635 exon3 c.C924T p.F308F . . . ZNF547 284306 broad.mit.edu 36 19 62581187 62581187 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173631 exon4 c.G1031T p.R344I . . . ZNF548 147694 broad.mit.edu 36 19 62602219 62602219 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152909 exon3 c.G752T p.R251M . . . ACER1 125981 broad.mit.edu 36 19 6260769 6260769 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133492 exon4 c.G427A p.A143T . . . ZNF772 400720 broad.mit.edu 36 19 62676488 62676488 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024596 exon5 c.G1436A p.R479H . . . ZNF419 79744 broad.mit.edu 36 19 62696289 62696289 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098494 exon4 c.G456T p.E152D . . . ZNF419 79744 broad.mit.edu 36 19 62696767 62696767 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001098494 exon4 c.A934C p.K312Q . . . ZNF419 79744 broad.mit.edu 36 19 62696934 62696934 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001098494 exon4 c.T1101G p.F367L . . . ZNF773 374928 broad.mit.edu 36 19 62709623 62709623 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198542 exon4 c.G348T p.Q116H . . . ZNF773 374928 broad.mit.edu 36 19 62710341 62710341 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198542 exon4 c.G1066T p.E356X . . . ZNF773 374928 broad.mit.edu 36 19 62710408 62710408 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198542 exon4 c.G1133A p.R378Q . . . ZNF549 256051 broad.mit.edu 36 19 62738359 62738359 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199295 exon3 c.C108A p.F36L . . . ZNF549 256051 broad.mit.edu 36 19 62740638 62740638 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199295 exon4 c.A454G p.N152D . . . ZNF549 256051 broad.mit.edu 36 19 62741106 62741106 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199295 exon4 c.G922A p.E308K . . . ZNF549 256051 broad.mit.edu 36 19 62741794 62741794 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199295 exon4 c.T1610C p.V537A . . . ZNF549 256051 broad.mit.edu 36 19 62741998 62741998 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199295 exon4 c.G1814A p.R605Q . . . ZNF416 55659 broad.mit.edu 36 19 62779023 62779023 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017879 exon3 c.G163A p.D55N . . . ZIK1 284307 broad.mit.edu 36 19 62793567 62793567 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010879 exon4 c.G576T p.K192N . . . ZNF530 348327 broad.mit.edu 36 19 62809113 62809113 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020880 exon3 c.C408A p.L136L . . . ZNF530 348327 broad.mit.edu 36 19 62810356 62810356 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020880 exon3 c.G1651T p.E551X . . . ZSCAN4 201516 broad.mit.edu 36 19 62881781 62881781 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152677 exon5 c.G998T p.R333I . . . ZNF551 90233 broad.mit.edu 36 19 62890084 62890084 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138347 exon3 c.G581A p.S194N . . . ZNF154 7710 broad.mit.edu 36 19 62905034 62905034 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001085384 exon3 c.C1095A p.F365L . . . ZNF671 79891 broad.mit.edu 36 19 62924002 62924002 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024833 exon4 c.G1264T p.E422X . . . ZNF671 79891 broad.mit.edu 36 19 62924116 62924116 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024833 exon4 c.C1150A p.L384I . . . ZNF671 79891 broad.mit.edu 36 19 62924317 62924317 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024833 exon4 c.G949T p.E317X . . . ZNF417 147687 broad.mit.edu 36 19 63111825 63111825 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152475 exon3 c.G1633T p.E545X . . . C19orf18 147685 broad.mit.edu 36 19 63169767 63169767 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152474 exon4 c.C314T p.S105L . . . ZNF606 80095 broad.mit.edu 36 19 63181572 63181572 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025027 exon7 c.G2288A p.R763H . . . ZNF606 80095 broad.mit.edu 36 19 63182172 63182172 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025027 exon7 c.C1688A p.S563Y . . . ZSCAN1 284312 broad.mit.edu 36 19 63255773 63255773 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182572 exon5 c.C569T p.A190V . . . ZSCAN1 284312 broad.mit.edu 36 19 63256762 63256762 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182572 exon6 c.G758T p.R253M . . . ZNF329 79673 broad.mit.edu 36 19 63332253 63332253 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024620 exon4 c.G430T p.E144X . . . GTF2F1 2962 broad.mit.edu 36 19 6340607 6340607 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002096 exon4 c.A174C p.Q58H . . . ZNF544 27300 broad.mit.edu 36 19 63465212 63465212 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014480 exon7 c.C1428A p.S476R . . . ZNF544 27300 broad.mit.edu 36 19 63465593 63465593 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014480 exon7 c.C1809A p.P603P . . . ZSCAN22 342945 broad.mit.edu 36 19 63541717 63541717 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_181846 exon3 c.C689A p.S230Y . . . ZSCAN22 342945 broad.mit.edu 36 19 63542417 63542417 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181846 exon3 c.T1389G p.P463P . . . ZNF132 7691 broad.mit.edu 36 19 63637773 63637773 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003433 exon3 c.T850A p.F284I . . . ZNF132 7691 broad.mit.edu 36 19 63637856 63637856 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003433 exon3 c.G767T p.R256I . . . SLC27A5 10998 broad.mit.edu 36 19 63714067 63714067 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012254 exon2 c.C731A p.A244D . . . CHMP2A 27243 broad.mit.edu 36 19 63757240 63757240 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198426 exon2 c.C152T p.A51V . . . SLC25A23 79085 broad.mit.edu 36 19 6408528 6408528 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024103 exon3 c.G357A p.E119E . . . DENND1C 79958 broad.mit.edu 36 19 6418766 6418766 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024898 exon23 c.C2155A p.L719M . . . DENND1C 79958 broad.mit.edu 36 19 6426303 6426303 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024898 exon14 c.C1035T p.D345D . . . DENND1C 79958 broad.mit.edu 36 19 6429850 6429850 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024898 exon6 c.T310C p.F104L . . . DENND1C 79958 broad.mit.edu 36 19 6430707 6430707 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024898 exon4 c.A149C p.K50T . . . DENND1C 79958 broad.mit.edu 36 19 6431028 6431028 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024898 exon2 c.G52A p.E18K . . . C3 718 broad.mit.edu 36 19 6663606 6663606 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000064 exon10 c.C1032T p.S344S . . . GPR108 56927 broad.mit.edu 36 19 6683521 6683521 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080452 exon11 c.G973A p.E325K . . . GPR108 56927 broad.mit.edu 36 19 6685027 6685027 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080452 exon6 c.G538A p.A180T . . . TRIP10 9322 broad.mit.edu 36 19 6693999 6693999 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004240 exon4 c.C219T p.F73F . . . SH2D3A 10045 broad.mit.edu 36 19 6711665 6711665 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005490 exon3 c.C403T p.R135W . . . VAV1 7409 broad.mit.edu 36 19 6780846 6780846 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005428 exon14 c.G1315T p.D439Y . . . VAV1 7409 broad.mit.edu 36 19 6808081 6808081 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005428 exon27 c.C2501A p.A834D . . . EMR1 2015 broad.mit.edu 36 19 6841546 6841546 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001974 exon2 c.A86C p.N29T . . . EMR1 2015 broad.mit.edu 36 19 6848257 6848257 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001974 exon4 c.C336A p.F112L . . . EMR1 2015 broad.mit.edu 36 19 6870714 6870714 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001974 exon13 c.G1576A p.D526N . . . C19orf21 126353 broad.mit.edu 36 19 709401 709401 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173481 exon2 c.G1455A p.S485S . . . ARHGEF18 23370 broad.mit.edu 36 19 7422049 7422049 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015318 exon7 c.C714A p.F238L . . . ARHGEF18 23370 broad.mit.edu 36 19 7424468 7424468 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015318 exon8 c.C933T p.I311I . . . MCOLN1 57192 broad.mit.edu 36 19 7499485 7499485 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020533 exon8 c.G880T p.D294Y . . . PNPLA6 10908 broad.mit.edu 36 19 7521271 7521271 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001166111 exon17 c.C1929T p.F643F . . . KIAA1543 57662 broad.mit.edu 36 19 7588455 7588455 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080429 exon18 c.G3433A p.A1145T . . . STXBP2 6813 broad.mit.edu 36 19 7611692 7611692 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006949 exon5 c.G322A p.D108N . . . CLEC4G 339390 broad.mit.edu 36 19 7700348 7700348 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198492 exon9 c.G786A p.E262E . . . CLEC4M 10332 broad.mit.edu 36 19 7737059 7737059 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144904 exon4 c.C597A p.I199I . . . FBN3 84467 broad.mit.edu 36 19 8043014 8043014 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032447 exon62 c.C8006T p.S2669L . . . FBN3 84467 broad.mit.edu 36 19 8077113 8077113 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032447 exon37 c.C4692T p.I1564I . . . CD320 51293 broad.mit.edu 36 19 8273692 8273692 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016579 exon4 c.C675T p.S225S . . . ANGPTL4 51129 broad.mit.edu 36 19 8342306 8342306 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039667 exon5 c.C825T p.G275G . . . HNRNPM 4670 broad.mit.edu 36 19 8459642 8459642 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005968 exon16 c.C2097T p.F699F . . . ADAMTS10 81794 broad.mit.edu 36 19 8567280 8567280 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030957 exon10 c.C1101T p.G367G . . . MBD3L1 85509 broad.mit.edu 36 19 8814598 8814598 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145208 exon1 c.G244A p.E82K . . . MUC16 94025 broad.mit.edu 36 19 8848234 8848234 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon68 c.C41853T p.I13951I . . . MUC16 94025 broad.mit.edu 36 19 8889332 8889332 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon11 c.G36460T p.D12154Y . . . MUC16 94025 broad.mit.edu 36 19 8899404 8899404 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon7 c.C36115T p.R12039W . . . MUC16 94025 broad.mit.edu 36 19 8907340 8907340 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon5 c.C35291T p.S11764F . . . MUC16 94025 broad.mit.edu 36 19 8907491 8907491 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon5 c.G35140T p.D11714Y . . . MUC16 94025 broad.mit.edu 36 19 8910838 8910838 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon5 c.C31793A p.S10598X . . . MUC16 94025 broad.mit.edu 36 19 8918863 8918863 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C29583T p.F9861F . . . MUC16 94025 broad.mit.edu 36 19 8919707 8919707 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C28739A p.S9580Y . . . MUC16 94025 broad.mit.edu 36 19 8919850 8919850 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C28596A p.L9532L . . . MUC16 94025 broad.mit.edu 36 19 8920476 8920476 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.G27970T p.E9324X . . . MUC16 94025 broad.mit.edu 36 19 8928212 8928212 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C20234A p.S6745Y . . . MUC16 94025 broad.mit.edu 36 19 8929130 8929130 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.A19316C p.K6439T . . . MUC16 94025 broad.mit.edu 36 19 8930155 8930155 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C18291A p.F6097L . . . MUC16 94025 broad.mit.edu 36 19 8931925 8931925 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C16521A p.A5507A . . . MUC16 94025 broad.mit.edu 36 19 8932670 8932670 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C15776A p.S5259Y . . . MUC16 94025 broad.mit.edu 36 19 8933316 8933316 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.C15130A p.L5044M . . . MUC16 94025 broad.mit.edu 36 19 8934640 8934640 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.A13806G p.G4602G . . . MUC16 94025 broad.mit.edu 36 19 8936788 8936788 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon3 c.G11658T p.M3886I . . . MUC16 94025 broad.mit.edu 36 19 8944587 8944587 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C8228T p.S2743L . . . MUC16 94025 broad.mit.edu 36 19 8944847 8944847 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.G7968T p.E2656D . . . MUC16 94025 broad.mit.edu 36 19 8944978 8944978 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.G7837A p.V2613I . . . MUC16 94025 broad.mit.edu 36 19 8945535 8945535 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C7280T p.S2427F . . . MUC16 94025 broad.mit.edu 36 19 8945646 8945646 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C7169T p.S2390F . . . MUC16 94025 broad.mit.edu 36 19 8946065 8946065 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C6750A p.V2250V . . . MUC16 94025 broad.mit.edu 36 19 8946146 8946146 + Silent SNP G A A rs73495780 by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C6669T p.S2223S . . . MUC16 94025 broad.mit.edu 36 19 8946583 8946583 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.T6232G p.S2078A . . . MUC16 94025 broad.mit.edu 36 19 8947714 8947714 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.T5101C p.S1701P . . . MUC16 94025 broad.mit.edu 36 19 8948069 8948069 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C4746A p.S1582S . . . MUC16 94025 broad.mit.edu 36 19 8949600 8949600 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C3215T p.T1072I . . . MUC16 94025 broad.mit.edu 36 19 8950541 8950541 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.A2274G p.E758E . . . MUC16 94025 broad.mit.edu 36 19 8950788 8950788 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024690 exon1 c.C2027A p.S676Y . . . OR1M1 125963 broad.mit.edu 36 19 9065844 9065844 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004456 exon1 c.G924T p.K308N . . . OR7G2 390882 broad.mit.edu 36 19 9074278 9074278 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005193 exon1 c.C705A p.I235I . . . OR7G2 390882 broad.mit.edu 36 19 9074680 9074680 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005193 exon1 c.G303T p.K101N . . . OR7G1 125962 broad.mit.edu 36 19 9086532 9086532 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005192 exon1 c.A908C p.K303T . . . OR7G1 125962 broad.mit.edu 36 19 9086769 9086769 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005192 exon1 c.C671A p.S224Y . . . OR7G3 390883 broad.mit.edu 36 19 9097889 9097889 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001958 exon1 c.C738T p.I246I . . . ZNF317 57693 broad.mit.edu 36 19 9128967 9128967 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190791 exon4 c.C186T p.V62V . . . ZNF317 57693 broad.mit.edu 36 19 9132604 9132604 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190791 exon6 c.G1187A p.R396Q . . . OR7D2 162998 broad.mit.edu 36 19 9157968 9157968 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175883 exon1 c.G511T p.D171Y . . . OR7D2 162998 broad.mit.edu 36 19 9158079 9158079 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175883 exon1 c.G622A p.V208I . . . OR7D4 125958 broad.mit.edu 36 19 9186110 9186110 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001005191 exon1 c.T404C p.I135T . . . OR7E24 26648 broad.mit.edu 36 19 9223412 9223412 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001079935 exon1 c.G693T p.G231G . . . ZNF699 374879 broad.mit.edu 36 19 9274107 9274107 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198535 exon2 c.G122T p.R41I . . . ZNF177 7730 broad.mit.edu 36 19 9353371 9353371 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001172651 exon6 c.T1364G p.I455S . . . ZNF266 10781 broad.mit.edu 36 19 9384994 9384994 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006631 exon11 c.G1607A p.R536Q . . . ZNF266 10781 broad.mit.edu 36 19 9385066 9385066 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006631 exon11 c.G1535A p.R512Q . . . ZNF266 10781 broad.mit.edu 36 19 9385612 9385612 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006631 exon11 c.G989A p.G330E . . . ZNF560 147741 broad.mit.edu 36 19 9438447 9438447 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152476 exon10 c.G2176T p.D726Y . . . ZNF560 147741 broad.mit.edu 36 19 9438834 9438834 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152476 exon10 c.G1789T p.E597X . . . ZNF426 79088 broad.mit.edu 36 19 9500964 9500964 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024106 exon8 c.G757A p.E253K . . . ZNF561 93134 broad.mit.edu 36 19 9582101 9582101 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152289 exon6 c.G1236T p.L412F . . . ZNF561 93134 broad.mit.edu 36 19 9582569 9582569 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152289 exon6 c.G768T p.K256N . . . ZNF562 54811 broad.mit.edu 36 19 9625066 9625066 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001130032 exon6 c.A840C p.K280N . . . ZNF846 162993 broad.mit.edu 36 19 9729260 9729260 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077624 exon6 c.G1493A p.R498Q . . . ZNF846 162993 broad.mit.edu 36 19 9734997 9734997 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077624 exon3 c.G103T p.D35Y . . . FBXL12 54850 broad.mit.edu 36 19 9783118 9783118 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017703 exon3 c.G435T p.Q145H . . . OLFM2 93145 broad.mit.edu 36 19 9826083 9826083 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058164 exon6 c.G1144A p.V382M . . . CNN2 1265 broad.mit.edu 36 19 987489 987489 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_201277 exon5 c.G465T p.K155N . . . COL5A3 50509 broad.mit.edu 36 19 9932203 9932203 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015719 exon67 c.G5122A p.E1708K . . . COL5A3 50509 broad.mit.edu 36 19 9942910 9942910 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015719 exon52 c.C3799A p.L1267I . . . COL5A3 50509 broad.mit.edu 36 19 9946048 9946048 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015719 exon46 c.G3379T p.G1127C . . . COL5A3 50509 broad.mit.edu 36 19 9973446 9973446 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015719 exon7 c.G961T p.E321X . . . COL5A3 50509 broad.mit.edu 36 19 9975298 9975298 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015719 exon6 c.G792T p.R264S . . . RDH8 50700 broad.mit.edu 36 19 9988844 9988844 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015725 exon2 c.C215T p.S72L . . . SLC7A13 157724 broad.mit.edu 36 8 87311604 87311604 + Frame_Shift_Del DEL T - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_138817 exon1 c.19delA p.I7fs . . . VPS13B 157680 broad.mit.edu 36 8 100095201 100095201 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152564 exon2 c.G9T p.E3D . . . VPS13B 157680 broad.mit.edu 36 8 100192531 100192531 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152564 exon6 c.A610C p.N204H . . . VPS13B 157680 broad.mit.edu 36 8 100229409 100229409 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152564 exon14 c.G2008T p.E670X . . . VPS13B 157680 broad.mit.edu 36 8 100238147 100238147 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152564 exon15 c.G2208A p.K736K . . . VPS13B 157680 broad.mit.edu 36 8 100355717 100355717 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152564 exon18 c.A2631C p.K877N . . . VPS13B 157680 broad.mit.edu 36 8 100781313 100781313 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152564 exon36 c.T6431G p.V2144G . . . VPS13B 157680 broad.mit.edu 36 8 100801751 100801751 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152564 exon38 c.C6660A p.V2220V . . . VPS13B 157680 broad.mit.edu 36 8 100802270 100802270 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152564 exon39 c.C6869A p.S2290Y . . . RGS22 26166 broad.mit.edu 36 8 101044331 101044331 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015668 exon25 c.C3667A p.L1223I . . . RGS22 26166 broad.mit.edu 36 8 101080707 101080707 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015668 exon19 c.T2908C p.F970L . . . RGS22 26166 broad.mit.edu 36 8 101087442 101087442 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015668 exon16 c.G2433T p.E811D . . . RGS22 26166 broad.mit.edu 36 8 101145232 101145232 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015668 exon8 c.G940T p.E314X . . . RGS22 26166 broad.mit.edu 36 8 101186783 101186783 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015668 exon2 c.G49T p.E17X . . . FBXO43 286151 broad.mit.edu 36 8 101223550 101223550 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001029860 exon2 c.G108A p.S36S . . . SPAG1 6674 broad.mit.edu 36 8 101312572 101312572 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003114 exon15 c.T1868G p.F623C . . . RNF19A 25897 broad.mit.edu 36 8 101340549 101340549 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015435 exon11 c.G1928A p.R643Q . . . RNF19A 25897 broad.mit.edu 36 8 101351298 101351298 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015435 exon5 c.G1003A p.E335K . . . RNF19A 25897 broad.mit.edu 36 8 101356407 101356407 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015435 exon4 c.G833T p.R278I . . . GRHL2 79977 broad.mit.edu 36 8 102658904 102658904 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024915 exon7 c.G984A p.K328K . . . UBR5 51366 broad.mit.edu 36 8 103386637 103386637 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015902 exon21 c.G2679T p.M893I . . . UBR5 51366 broad.mit.edu 36 8 103423937 103423937 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015902 exon9 c.G1038T p.K346N . . . UBR5 51366 broad.mit.edu 36 8 103443012 103443012 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015902 exon2 c.G81T p.E27D . . . ODF1 4956 broad.mit.edu 36 8 103633215 103633215 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024410 exon1 c.C84T p.I28I . . . PRSS55 203074 broad.mit.edu 36 8 10424493 10424493 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001197020 exon2 c.C221T p.A74V . . . PRSS55 203074 broad.mit.edu 36 8 10433531 10433531 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198464 exon5 c.C877A p.L293I . . . PRSS55 203074 broad.mit.edu 36 8 10433595 10433595 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198464 exon5 c.C941A p.S314Y . . . FZD6 8323 broad.mit.edu 36 8 104405976 104405976 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164615 exon4 c.G466T p.D156Y . . . FZD6 8323 broad.mit.edu 36 8 104406743 104406743 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164615 exon4 c.G1233T p.K411N . . . CTHRC1 115908 broad.mit.edu 36 8 104459507 104459507 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138455 exon3 c.G449A p.R150K . . . SLC25A32 81034 broad.mit.edu 36 8 104489144 104489144 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030780 exon2 c.C199T p.H67Y . . . DCAF13 25879 broad.mit.edu 36 8 104501772 104501772 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015420 exon2 c.C631A p.L211I . . . DCAF13 25879 broad.mit.edu 36 8 104502472 104502472 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015420 exon3 c.A820G p.T274A . . . RIMS2 9699 broad.mit.edu 36 8 104967244 104967244 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100117 exon4 c.G1241T p.R414I . . . RIMS2 9699 broad.mit.edu 36 8 104993496 104993496 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001100117 exon6 c.T1732G p.L578V . . . RP1L1 94137 broad.mit.edu 36 8 10503099 10503099 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178857 exon4 c.G5919T p.E1973D . . . RP1L1 94137 broad.mit.edu 36 8 10505714 10505714 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178857 exon4 c.G3304A p.E1102K . . . RIMS2 9699 broad.mit.edu 36 8 105070732 105070732 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100117 exon17 c.G2951A p.R984Q . . . RP1L1 94137 broad.mit.edu 36 8 10507255 10507255 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_178857 exon4 c.A1763G p.D588G . . . RP1L1 94137 broad.mit.edu 36 8 10507791 10507791 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178857 exon4 c.G1227A p.T409T . . . RIMS2 9699 broad.mit.edu 36 8 105330925 105330925 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001100117 exon22 c.A3624G p.G1208G . . . DPYS 1807 broad.mit.edu 36 8 105528835 105528835 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001385 exon3 c.G496T p.D166Y . . . LRP12 29967 broad.mit.edu 36 8 105576611 105576611 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013437 exon6 c.C1583A p.S528X . . . LRP12 29967 broad.mit.edu 36 8 105580755 105580755 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013437 exon4 c.C441A p.I147I . . . SOX7 83595 broad.mit.edu 36 8 10620829 10620829 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031439 exon2 c.C996T p.F332F . . . ZFPM2 23414 broad.mit.edu 36 8 106884108 106884108 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012082 exon8 c.G2622T p.Q874H . . . ZFPM2 23414 broad.mit.edu 36 8 106884237 106884237 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012082 exon8 c.G2751A p.E917E . . . OXR1 55074 broad.mit.edu 36 8 107784457 107784457 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181354 exon6 c.G802T p.E268X . . . OXR1 55074 broad.mit.edu 36 8 107787787 107787787 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181354 exon7 c.G841T p.D281Y . . . ANGPT1 284 broad.mit.edu 36 8 108578854 108578854 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146 exon1 c.C109A p.Q37K . . . TTC35 9694 broad.mit.edu 36 8 109567926 109567926 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014673 exon11 c.C817T p.R273X . . . TRHR 7201 broad.mit.edu 36 8 110169602 110169602 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003301 exon1 c.G685T p.E229X . . . PKHD1L1 93035 broad.mit.edu 36 8 110526472 110526472 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon38 c.C5198T p.A1733V . . . PKHD1L1 93035 broad.mit.edu 36 8 110526767 110526767 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon38 c.C5493T p.P1831P . . . PKHD1L1 93035 broad.mit.edu 36 8 110541172 110541172 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon47 c.T7177G p.L2393V . . . PKHD1L1 93035 broad.mit.edu 36 8 110557935 110557935 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon52 c.C8780A p.S2927X . . . PKHD1L1 93035 broad.mit.edu 36 8 110573305 110573305 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon62 c.G10142A p.R3381Q . . . PKHD1L1 93035 broad.mit.edu 36 8 110589198 110589198 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon69 c.G11125A p.G3709R . . . PKHD1L1 93035 broad.mit.edu 36 8 110596615 110596615 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon72 c.T11594C p.L3865S . . . PKHD1L1 93035 broad.mit.edu 36 8 110599744 110599744 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_177531 exon73 c.C11862A p.T3954T . . . SYBU 55638 broad.mit.edu 36 8 110724305 110724305 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099756 exon1 c.G48T p.E16D . . . MTMR9 66036 broad.mit.edu 36 8 11199862 11199862 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015458 exon4 c.C520T p.R174W . . . FAM167A 83648 broad.mit.edu 36 8 11319498 11319498 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053279 exon3 c.G439A p.D147N . . . CSMD3 114788 broad.mit.edu 36 8 113318635 113318635 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198123 exon67 c.C10587T p.N3529N . . . CSMD3 114788 broad.mit.edu 36 8 113362678 113362678 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198123 exon59 c.G9409T p.V3137F . . . CSMD3 114788 broad.mit.edu 36 8 113418154 113418154 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198123 exon44 c.G6922T p.D2308Y . . . CSMD3 114788 broad.mit.edu 36 8 113720276 113720276 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198123 exon21 c.T3351C p.H1117H . . . CSMD3 114788 broad.mit.edu 36 8 114003105 114003105 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198123 exon10 c.C1560T p.G520G . . . TRPS1 7227 broad.mit.edu 36 8 116701446 116701446 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014112 exon3 c.G54T p.K18N . . . FDFT1 2222 broad.mit.edu 36 8 11716732 11716732 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004462 exon4 c.G446T p.R149I . . . CTSB 1508 broad.mit.edu 36 8 11740099 11740099 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147781 exon11 c.G964A p.E322K . . . CTSB 1508 broad.mit.edu 36 8 11742702 11742702 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_147781 exon8 c.G571A p.V191I . . . UTP23 84294 broad.mit.edu 36 8 117853013 117853013 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032334 exon3 c.C501A p.V167V . . . RAD21 5885 broad.mit.edu 36 8 117938094 117938094 + Silent SNP G A A rs34653007 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006265 exon7 c.C786T p.D262D . . . SLC30A8 169026 broad.mit.edu 36 8 118252567 118252567 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173851 exon7 c.C943A p.L315I . . . SLC30A8 169026 broad.mit.edu 36 8 118254029 118254029 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173851 exon8 c.A1038C p.S346S . . . DEFB135 613209 broad.mit.edu 36 8 11879342 11879342 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033017 exon2 c.G68A p.R23K . . . DEFB134 613211 broad.mit.edu 36 8 11891139 11891139 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033019 exon1 c.C31A p.L11I . . . COLEC10 10584 broad.mit.edu 36 8 120187312 120187312 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006438 exon6 c.C535T p.R179W . . . USP17L2 377630 broad.mit.edu 36 8 12033186 12033186 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_201402 exon1 c.C493A p.L165I . . . NOV 4856 broad.mit.edu 36 8 120504283 120504283 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002514 exon5 c.G804T p.K268N . . . ENPP2 5168 broad.mit.edu 36 8 120675279 120675279 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130863 exon12 c.G975T p.M325I . . . ENPP2 5168 broad.mit.edu 36 8 120698957 120698957 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130863 exon6 c.C507A p.F169L . . . ENPP2 5168 broad.mit.edu 36 8 120719846 120719846 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001130863 exon2 c.G136A p.V46M . . . TAF2 6873 broad.mit.edu 36 8 120862570 120862570 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003184 exon17 c.G2157T p.M719I . . . COL14A1 7373 broad.mit.edu 36 8 121280956 121280956 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021110 exon8 c.C847T p.R283C . . . COL14A1 7373 broad.mit.edu 36 8 121285212 121285212 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021110 exon9 c.G961A p.D321N . . . COL14A1 7373 broad.mit.edu 36 8 121285281 121285281 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021110 exon9 c.G1030T p.E344X . . . COL14A1 7373 broad.mit.edu 36 8 121351498 121351498 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021110 exon26 c.A3117G p.G1039G . . . COL14A1 7373 broad.mit.edu 36 8 121359562 121359562 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021110 exon27 c.G3245T p.R1082I . . . COL14A1 7373 broad.mit.edu 36 8 121365109 121365109 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021110 exon32 c.G3878A p.R1293Q . . . COL14A1 7373 broad.mit.edu 36 8 121396983 121396983 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021110 exon39 c.G4582T p.D1528Y . . . COL14A1 7373 broad.mit.edu 36 8 121426905 121426905 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021110 exon45 c.G4999T p.A1667S . . . MTBP 27085 broad.mit.edu 36 8 121526975 121526975 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022045 exon1 c.G84T p.E28D . . . MTBP 27085 broad.mit.edu 36 8 121599502 121599502 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022045 exon19 c.G2477T p.R826I . . . HAS2 3037 broad.mit.edu 36 8 122696061 122696061 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005328 exon4 c.G1128T p.M376I . . . HAS2 3037 broad.mit.edu 36 8 122696125 122696125 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005328 exon4 c.G1064A p.S355N . . . WDR67 93594 broad.mit.edu 36 8 124222183 124222183 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_145647 exon18 c.A2501T p.N834I . . . FAM83A 84985 broad.mit.edu 36 8 124273241 124273241 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032899 exon2 c.G498T p.M166I . . . ZHX1 11244 broad.mit.edu 36 8 124336838 124336838 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017926 exon3 c.C530A p.S177Y . . . ATAD2 29028 broad.mit.edu 36 8 124417821 124417821 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014109 exon22 c.G3184T p.E1062X . . . ATAD2 29028 broad.mit.edu 36 8 124419167 124419167 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014109 exon21 c.G2930A p.R977Q . . . ATAD2 29028 broad.mit.edu 36 8 124426368 124426368 + Silent SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014109 exon19 c.T2655A p.P885P . . . FBXO32 114907 broad.mit.edu 36 8 124586150 124586150 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058229 exon8 c.C853A p.L285M . . . KLHL38 340359 broad.mit.edu 36 8 124733568 124733568 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001081675 exon1 c.C780A p.F260L . . . KLHL38 340359 broad.mit.edu 36 8 124733796 124733796 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001081675 exon1 c.C552T p.L184L . . . FAM91A1 157769 broad.mit.edu 36 8 124855522 124855522 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144963 exon2 c.G94T p.E32X . . . FAM91A1 157769 broad.mit.edu 36 8 124871127 124871127 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144963 exon15 c.C1372A p.L458I . . . FER1L6 654463 broad.mit.edu 36 8 125059012 125059012 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039112 exon10 c.G1045A p.E349K . . . FER1L6 654463 broad.mit.edu 36 8 125103015 125103015 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039112 exon17 c.G2058T p.K686N . . . FER1L6 654463 broad.mit.edu 36 8 125142011 125142011 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039112 exon24 c.C3027T p.L1009L . . . FER1L6 654463 broad.mit.edu 36 8 125142126 125142126 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039112 exon24 c.G3142A p.E1048K . . . TMEM65 157378 broad.mit.edu 36 8 125401525 125401525 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_194291 exon6 c.C604T p.R202C . . . RNF139 11236 broad.mit.edu 36 8 125568234 125568234 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007218 exon2 c.G1163T p.R388I . . . RNF139 11236 broad.mit.edu 36 8 125569005 125569005 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007218 exon2 c.G1934T p.R645I . . . SQLE 6713 broad.mit.edu 36 8 126088824 126088824 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003129 exon4 c.A736G p.I246V . . . LONRF1 91694 broad.mit.edu 36 8 12630881 12630881 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152271 exon10 c.C1910T p.S637F . . . LONRF1 91694 broad.mit.edu 36 8 12638601 12638601 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152271 exon6 c.C1431T p.F477F . . . TRIB1 10221 broad.mit.edu 36 8 126517844 126517844 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025195 exon3 c.G1068T p.Q356H . . . GSDMC 56169 broad.mit.edu 36 8 130841987 130841987 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031415 exon6 c.G707T p.R236I . . . FAM49B 51571 broad.mit.edu 36 8 130937107 130937107 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016623 exon9 c.C370T p.R124X . . . ASAP1 50807 broad.mit.edu 36 8 131173493 131173493 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018482 exon24 c.C2480A p.P827H . . . ASAP1 50807 broad.mit.edu 36 8 131193598 131193598 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018482 exon23 c.C2325T p.F775F . . . ASAP1 50807 broad.mit.edu 36 8 131296094 131296094 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018482 exon4 c.C295A p.L99I . . . ADCY8 114 broad.mit.edu 36 8 131861974 131861974 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001115 exon18 c.C3600T p.V1200V . . . ADCY8 114 broad.mit.edu 36 8 131991141 131991141 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001115 exon6 c.C1635T p.I545I . . . ADCY8 114 broad.mit.edu 36 8 132121081 132121081 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001115 exon1 c.C681T p.C227C . . . DLC1 10395 broad.mit.edu 36 8 13295519 13295519 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182643 exon4 c.C1228T p.R410X . . . EFR3A 23167 broad.mit.edu 36 8 133051966 133051966 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015137 exon10 c.C1053T p.F351F . . . KCNQ3 3786 broad.mit.edu 36 8 133265712 133265712 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004519 exon3 c.C562T p.R188W . . . PHF20L1 51105 broad.mit.edu 36 8 133896066 133896066 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032205 exon10 c.G933A p.A311A . . . PHF20L1 51105 broad.mit.edu 36 8 133920995 133920995 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016018 exon18 c.G2373T p.K791N . . . PHF20L1 51105 broad.mit.edu 36 8 133925741 133925741 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016018 exon20 c.C2907T p.V969V . . . TG 7038 broad.mit.edu 36 8 133952976 133952976 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003235 exon4 c.G476A p.R159Q . . . TG 7038 broad.mit.edu 36 8 133968437 133968437 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003235 exon9 c.G1638A p.K546K . . . TG 7038 broad.mit.edu 36 8 133969725 133969725 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003235 exon10 c.G2491T p.D831Y . . . TG 7038 broad.mit.edu 36 8 133980285 133980285 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003235 exon14 c.G3278T p.R1093I . . . DLC1 10395 broad.mit.edu 36 8 13401585 13401585 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182643 exon2 c.G367A p.D123N . . . TG 7038 broad.mit.edu 36 8 134111329 134111329 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003235 exon41 c.T7118G p.F2373C . . . SLA 6503 broad.mit.edu 36 8 134141594 134141594 + 5'UTR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001045557 exon2 c.G45T p.K15N . . . TG 7038 broad.mit.edu 36 8 134176575 134176575 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003235 exon42 c.G7345T p.E2449X . . . ZFAT 57623 broad.mit.edu 36 8 135602315 135602315 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001174157 exon12 c.A3041G p.K1014R . . . ZFAT 57623 broad.mit.edu 36 8 135681975 135681975 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001174157 exon6 c.C2175T p.R725R . . . FAM135B 51059 broad.mit.edu 36 8 139227437 139227437 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015912 exon15 c.G3487T p.E1163X . . . FAM135B 51059 broad.mit.edu 36 8 139234217 139234217 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015912 exon13 c.G1683T p.K561N . . . FAM135B 51059 broad.mit.edu 36 8 139234433 139234433 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015912 exon13 c.A1467C p.Q489H . . . FAM135B 51059 broad.mit.edu 36 8 139234496 139234496 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015912 exon13 c.C1404T p.S468S . . . FAM135B 51059 broad.mit.edu 36 8 139249428 139249428 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015912 exon12 c.T1150C p.Y384H . . . FAM135B 51059 broad.mit.edu 36 8 139258841 139258841 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015912 exon11 c.G1034A p.R345Q . . . COL22A1 169044 broad.mit.edu 36 8 139678365 139678365 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152888 exon62 c.C4396T p.R1466W . . . COL22A1 169044 broad.mit.edu 36 8 139765866 139765866 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152888 exon39 c.G2996T p.G999V . . . COL22A1 169044 broad.mit.edu 36 8 139914538 139914538 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152888 exon5 c.C771T p.I257I . . . KCNK9 51305 broad.mit.edu 36 8 140700398 140700398 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016601 exon2 c.G410A p.R137H . . . TRAPPC9 83696 broad.mit.edu 36 8 141518438 141518438 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160372 exon3 c.G625A p.V209M . . . DENND3 22898 broad.mit.edu 36 8 142254521 142254521 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014957 exon14 c.C2076A p.F692L . . . DENND3 22898 broad.mit.edu 36 8 142254660 142254660 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014957 exon14 c.G2215A p.A739T . . . FLJ43860 389690 broad.mit.edu 36 8 142574764 142574764 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207414 exon3 c.C264A p.A88A . . . GML 2765 broad.mit.edu 36 8 143924990 143924990 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002066 exon4 c.G359T p.R120M . . . TOP1MT 116447 broad.mit.edu 36 8 144471596 144471596 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052963 exon9 c.G1182T p.K394N . . . SGCZ 137868 broad.mit.edu 36 8 14456615 14456615 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_139167 exon2 c.T231G p.T77T . . . PLEC 5339 broad.mit.edu 36 8 145065458 145065458 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_201383 exon32 c.G10531A p.D3511N . . . SLC39A4 55630 broad.mit.edu 36 8 145611167 145611167 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_130849 exon4 c.C803T p.T268M . . . ZNF251 90987 broad.mit.edu 36 8 145919143 145919143 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138367 exon5 c.C711T p.Y237Y . . . ZNF251 90987 broad.mit.edu 36 8 145919252 145919252 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138367 exon5 c.G602T p.R201I . . . ZNF251 90987 broad.mit.edu 36 8 145919520 145919520 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138367 exon5 c.G334T p.E112X . . . TUSC3 7991 broad.mit.edu 36 8 15525068 15525068 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178234 exon2 c.A247C p.N83H . . . FGF20 26281 broad.mit.edu 36 8 16895182 16895182 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019851 exon3 c.G406A p.E136K . . . CLN8 2055 broad.mit.edu 36 8 1707057 1707057 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018941 exon2 c.C430A p.L144I . . . ZDHHC2 51201 broad.mit.edu 36 8 17107571 17107571 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016353 exon7 c.C513A p.F171L . . . ZDHHC2 51201 broad.mit.edu 36 8 17107649 17107649 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_016353 exon7 c.T591G p.F197L . . . MTUS1 57509 broad.mit.edu 36 8 17555268 17555268 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001001925 exon10 c.A3072C p.E1024D . . . MTUS1 57509 broad.mit.edu 36 8 17617635 17617635 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001925 exon4 c.G2343T p.Q781H . . . MTUS1 57509 broad.mit.edu 36 8 17655773 17655773 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001925 exon2 c.G1824T p.V608V . . . MTUS1 57509 broad.mit.edu 36 8 17656288 17656288 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001001925 exon2 c.A1309C p.K437Q . . . MTUS1 57509 broad.mit.edu 36 8 17657385 17657385 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001925 exon2 c.C212A p.S71Y . . . PCM1 5108 broad.mit.edu 36 8 17857339 17857339 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006197 exon10 c.G1369T p.E457X . . . PCM1 5108 broad.mit.edu 36 8 17858433 17858433 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006197 exon11 c.G1513T p.E505X . . . PCM1 5108 broad.mit.edu 36 8 17867953 17867953 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006197 exon19 c.G3021T p.K1007N . . . PCM1 5108 broad.mit.edu 36 8 17874275 17874275 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006197 exon23 c.G3742A p.G1248R . . . PCM1 5108 broad.mit.edu 36 8 17887790 17887790 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006197 exon26 c.G4324T p.E1442X . . . PCM1 5108 broad.mit.edu 36 8 17916375 17916375 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006197 exon36 c.G5587T p.D1863Y . . . ASAH1 427 broad.mit.edu 36 8 17959368 17959368 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004315 exon14 c.C1191T p.F397F . . . ARHGEF10 9639 broad.mit.edu 36 8 1864093 1864093 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014629 exon24 c.C2791T p.R931C . . . PSD3 23362 broad.mit.edu 36 8 18769570 18769570 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015310 exon4 c.G1528T p.D510Y . . . PSD3 23362 broad.mit.edu 36 8 18773693 18773693 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015310 exon3 c.G961T p.D321Y . . . SH2D4A 63898 broad.mit.edu 36 8 19275404 19275404 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174160 exon7 c.G866A p.R289Q . . . SLC18A1 6570 broad.mit.edu 36 8 20049832 20049832 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003053 exon13 c.C1176A p.L392L . . . MYOM2 9172 broad.mit.edu 36 8 2007867 2007867 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003970 exon9 c.G829A p.D277N . . . LZTS1 11178 broad.mit.edu 36 8 20154603 20154603 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021020 exon2 c.C1119T p.F373F . . . LZTS1 11178 broad.mit.edu 36 8 20156787 20156787 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021020 exon1 c.C186T p.S62S . . . EPB49 2039 broad.mit.edu 36 8 21983748 21983748 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114138 exon8 c.C561T p.I187I . . . PIWIL2 55124 broad.mit.edu 36 8 22194659 22194659 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018068 exon3 c.C280T p.P94S . . . PIWIL2 55124 broad.mit.edu 36 8 22217653 22217653 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018068 exon11 c.C1356A p.F452L . . . PPP3CC 5533 broad.mit.edu 36 8 22424547 22424547 + Missense_Mutation SNP G A A rs61756434 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005605 exon5 c.G488A p.R163Q . . . PPP3CC 5533 broad.mit.edu 36 8 22445714 22445714 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005605 exon11 c.G1173A p.R391R . . . KIAA1967 57805 broad.mit.edu 36 8 22526493 22526493 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021174 exon8 c.G603T p.K201N . . . RHOBTB2 23221 broad.mit.edu 36 8 22920285 22920285 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160036 exon7 c.C648T p.F216F . . . RHOBTB2 23221 broad.mit.edu 36 8 22920579 22920579 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160036 exon7 c.C942A p.F314L . . . TNFRSF10B 8795 broad.mit.edu 36 8 22940707 22940707 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003842 exon7 c.G820T p.E274X . . . TNFRSF10B 8795 broad.mit.edu 36 8 22942008 22942008 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003842 exon5 c.G529A p.E177K . . . TNFRSF10B 8795 broad.mit.edu 36 8 22943126 22943126 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003842 exon4 c.G418A p.E140K . . . TNFRSF10D 8793 broad.mit.edu 36 8 23057992 23057992 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003840 exon7 c.C870A p.V290V . . . LOXL2 4017 broad.mit.edu 36 8 23254543 23254543 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002318 exon4 c.T650G p.I217S . . . ADAM28 10863 broad.mit.edu 36 8 24213489 24213489 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021777 exon2 c.G104T p.R35I . . . ADAM28 10863 broad.mit.edu 36 8 24237393 24237393 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021777 exon9 c.G822T p.E274D . . . ADAM7 8756 broad.mit.edu 36 8 24398704 24398704 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003817 exon10 c.G900A p.V300V . . . ADAM7 8756 broad.mit.edu 36 8 24402641 24402641 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003817 exon12 c.C1171A p.L391I . . . NEFM 4741 broad.mit.edu 36 8 24829053 24829053 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005382 exon2 c.C1111T p.R371W . . . DOCK5 80005 broad.mit.edu 36 8 25286048 25286048 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024940 exon35 c.C3581T p.A1194V . . . PPP2R2A 5520 broad.mit.edu 36 8 26283648 26283648 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177591 exon10 c.G1176A p.S392S . . . DPYSL2 1808 broad.mit.edu 36 8 26561168 26561168 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001386 exon11 c.G1216A p.D406N . . . STMN4 81551 broad.mit.edu 36 8 27155126 27155126 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030795 exon4 c.G175T p.E59X . . . PTK2B 2185 broad.mit.edu 36 8 27367994 27367994 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173176 exon30 c.C2763T p.I921I . . . CHRNA2 1135 broad.mit.edu 36 8 27376983 27376983 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000742 exon6 c.G894A p.T298T . . . CHRNA2 1135 broad.mit.edu 36 8 27380765 27380765 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000742 exon5 c.G347A p.S116N . . . CLU 1191 broad.mit.edu 36 8 27513397 27513397 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171138 exon7 c.C1014T p.L338L . . . C8orf80 389643 broad.mit.edu 36 8 27981067 27981067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001010906 exon6 c.G594T p.W198C . . . CSMD1 64478 broad.mit.edu 36 8 2807415 2807415 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033225 exon61 c.G9609A p.R3203R . . . FBXO16 157574 broad.mit.edu 36 8 28365796 28365796 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172366 exon6 c.G624T p.K208N . . . FZD3 7976 broad.mit.edu 36 8 28416561 28416561 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145866 exon2 c.G112T p.D38Y . . . FZD3 7976 broad.mit.edu 36 8 28441295 28441295 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145866 exon4 c.G1099A p.D367N . . . FZD3 7976 broad.mit.edu 36 8 28441397 28441397 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145866 exon4 c.C1201T p.R401X . . . EXTL3 2137 broad.mit.edu 36 8 28630961 28630961 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001440 exon3 c.G1466A p.R489H . . . INTS9 55756 broad.mit.edu 36 8 28694323 28694323 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145159 exon11 c.C1143T p.F381F . . . CSMD1 64478 broad.mit.edu 36 8 2874422 2874422 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033225 exon51 c.G7682T p.X2561L . . . KIF13B 23303 broad.mit.edu 36 8 29023479 29023479 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015254 exon33 c.G3958T p.A1320S . . . KIF13B 23303 broad.mit.edu 36 8 29089552 29089552 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015254 exon10 c.G897T p.K299N . . . CSMD1 64478 broad.mit.edu 36 8 2987429 2987429 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033225 exon41 c.C6207T p.F2069F . . . RBPMS 11030 broad.mit.edu 36 8 30481489 30481489 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008711 exon5 c.G391T p.E131X . . . PPP2CB 5516 broad.mit.edu 36 8 30771097 30771097 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009552 exon5 c.C616T p.R206C . . . PPP2CB 5516 broad.mit.edu 36 8 30776604 30776604 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001009552 exon2 c.G312T p.K104N . . . TEX15 56154 broad.mit.edu 36 8 30819813 30819813 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031271 exon1 c.T6263C p.F2088S . . . TEX15 56154 broad.mit.edu 36 8 30820745 30820745 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031271 exon1 c.G5331T p.K1777N . . . TEX15 56154 broad.mit.edu 36 8 30820927 30820927 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031271 exon1 c.C5149T p.R1717X . . . TEX15 56154 broad.mit.edu 36 8 30821170 30821170 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031271 exon1 c.G4906T p.E1636X . . . TEX15 56154 broad.mit.edu 36 8 30821424 30821424 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031271 exon1 c.C4652T p.S1551L . . . TEX15 56154 broad.mit.edu 36 8 30822956 30822956 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031271 exon1 c.C3120A p.F1040L . . . TEX15 56154 broad.mit.edu 36 8 30823817 30823817 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031271 exon1 c.T2259G p.F753L . . . TEX15 56154 broad.mit.edu 36 8 30824476 30824476 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031271 exon1 c.G1600T p.E534X . . . TEX15 56154 broad.mit.edu 36 8 30825142 30825142 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031271 exon1 c.A934G p.T312A . . . WRN 7486 broad.mit.edu 36 8 31058097 31058097 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000553 exon9 c.G1012A p.V338I . . . WRN 7486 broad.mit.edu 36 8 31060806 31060806 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000553 exon10 c.G1319A p.S440N . . . WRN 7486 broad.mit.edu 36 8 31067557 31067557 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000553 exon14 c.G1687T p.E563X . . . CSMD1 64478 broad.mit.edu 36 8 3192982 3192982 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033225 exon22 c.C3414T p.S1138S . . . NRG1 3084 broad.mit.edu 36 8 32625087 32625087 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013959 exon1 c.C309A p.I103I . . . NRG1 3084 broad.mit.edu 36 8 32741117 32741117 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013957 exon12 c.A1569C p.E523D . . . FUT10 84750 broad.mit.edu 36 8 33366083 33366083 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032664 exon4 c.C1152T p.I384I . . . FUT10 84750 broad.mit.edu 36 8 33430431 33430431 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032664 exon3 c.G221T p.R74I . . . MAK16 84549 broad.mit.edu 36 8 33466171 33466171 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032509 exon5 c.C364T p.R122X . . . C8orf41 80185 broad.mit.edu 36 8 33480569 33480569 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025115 exon5 c.G1179T p.E393D . . . C8orf41 80185 broad.mit.edu 36 8 33489434 33489434 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025115 exon1 c.G240T p.E80D . . . C8orf41 80185 broad.mit.edu 36 8 33489506 33489506 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025115 exon1 c.T168C p.G56G . . . UNC5D 137970 broad.mit.edu 36 8 35703567 35703567 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080872 exon10 c.G1659A p.G553G . . . KCNU1 157855 broad.mit.edu 36 8 36781954 36781954 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001031836 exon4 c.G461T p.G154V . . . KCNU1 157855 broad.mit.edu 36 8 36812980 36812980 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001031836 exon13 c.C1304T p.S435F . . . KCNU1 157855 broad.mit.edu 36 8 36886017 36886017 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001031836 exon21 c.C2137T p.R713W . . . KCNU1 157855 broad.mit.edu 36 8 36886147 36886147 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001031836 exon21 c.C2267A p.S756Y . . . KCNU1 157855 broad.mit.edu 36 8 36912490 36912490 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001031836 exon27 c.T3344G p.I1115S . . . ERLIN2 11160 broad.mit.edu 36 8 37728375 37728375 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007175 exon10 c.G723T p.K241N . . . RAB11FIP1 80223 broad.mit.edu 36 8 37839577 37839577 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025151 exon5 c.G1944T p.K648N . . . RAB11FIP1 80223 broad.mit.edu 36 8 37848072 37848072 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002814 exon4 c.G3406A p.A1136T . . . RAB11FIP1 80223 broad.mit.edu 36 8 37851666 37851666 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025151 exon3 c.G1147A p.E383K . . . RAB11FIP1 80223 broad.mit.edu 36 8 37853869 37853869 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025151 exon2 c.G730A p.E244K . . . DDHD2 23259 broad.mit.edu 36 8 38211073 38211073 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164232 exon3 c.A225G p.K75K . . . LETM2 137994 broad.mit.edu 36 8 38376996 38376996 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144652 exon4 c.T410G p.F137C . . . FGFR1 2260 broad.mit.edu 36 8 38392570 38392570 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001174065 exon13 c.G1823A p.G608D . . . CSMD1 64478 broad.mit.edu 36 8 3842885 3842885 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033225 exon5 c.G766T p.E256X . . . ADAM9 8754 broad.mit.edu 36 8 38984628 38984628 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003816 exon2 c.G164T p.R55I . . . ADAM9 8754 broad.mit.edu 36 8 39068017 39068017 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003816 exon20 c.G2293T p.E765X . . . ADAM32 203102 broad.mit.edu 36 8 39210616 39210616 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145004 exon16 c.G1676A p.R559Q . . . ADAM18 8749 broad.mit.edu 36 8 39615205 39615205 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014237 exon10 c.G892T p.D298Y . . . ADAM18 8749 broad.mit.edu 36 8 39622020 39622020 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014237 exon11 c.G916T p.D306Y . . . ADAM18 8749 broad.mit.edu 36 8 39644725 39644725 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014237 exon14 c.T1378G p.F460V . . . ADAM18 8749 broad.mit.edu 36 8 39656853 39656853 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014237 exon16 c.G1772A p.G591E . . . ADAM2 2515 broad.mit.edu 36 8 39764846 39764846 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001464 exon9 c.G724A p.E242K . . . ADAM2 2515 broad.mit.edu 36 8 39797761 39797761 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001464 exon6 c.A430C p.K144Q . . . IDO2 169355 broad.mit.edu 36 8 39925936 39925936 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_194294 exon2 c.C134T p.S45F . . . ZMAT4 79698 broad.mit.edu 36 8 40802254 40802254 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024645 exon2 c.C99T p.Y33Y . . . AGPAT6 137964 broad.mit.edu 36 8 41586443 41586443 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178819 exon4 c.C348T p.F116F . . . ANK1 286 broad.mit.edu 36 8 41678278 41678278 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020475 exon22 c.G2408A p.R803Q . . . MYST3 7994 broad.mit.edu 36 8 41909730 41909730 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001099413 exon18 c.A5165C p.E1722A . . . MYST3 7994 broad.mit.edu 36 8 41910673 41910673 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001099413 exon18 c.G4222A p.E1408K . . . MYST3 7994 broad.mit.edu 36 8 41918083 41918083 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001099413 exon16 c.G2473T p.D825Y . . . MYST3 7994 broad.mit.edu 36 8 41925922 41925922 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001099413 exon11 c.G1715T p.R572I . . . PLAT 5327 broad.mit.edu 36 8 42156698 42156698 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033011 exon11 c.G1128T p.E376D . . . IKBKB 3551 broad.mit.edu 36 8 42296007 42296007 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190720 exon13 c.C1421A p.S474Y . . . POLB 5423 broad.mit.edu 36 8 42333875 42333875 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002690 exon8 c.C454T p.R152C . . . POLB 5423 broad.mit.edu 36 8 42348249 42348249 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002690 exon14 c.G925T p.E309X . . . CHRNB3 1142 broad.mit.edu 36 8 42683098 42683098 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000749 exon2 c.G134A p.R45H . . . CHRNB3 1142 broad.mit.edu 36 8 42705982 42705982 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000749 exon5 c.C375T p.F125F . . . CHRNB3 1142 broad.mit.edu 36 8 42706182 42706182 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000749 exon5 c.G575T p.R192I . . . HOOK3 84376 broad.mit.edu 36 8 42880523 42880523 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032410 exon2 c.G108A p.T36T . . . HOOK3 84376 broad.mit.edu 36 8 42961090 42961090 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032410 exon15 c.G1527T p.E509D . . . HOOK3 84376 broad.mit.edu 36 8 42971903 42971903 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032410 exon16 c.A1586C p.K529T . . . KIAA0146 23514 broad.mit.edu 36 8 48748962 48748962 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080394 exon11 c.C1591T p.H531Y . . . PRKDC 5591 broad.mit.edu 36 8 48912522 48912522 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001081640 exon57 c.G7564A p.E2522K . . . PRKDC 5591 broad.mit.edu 36 8 49002919 49002919 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001081640 exon20 c.G2224T p.E742X . . . EFCAB1 79645 broad.mit.edu 36 8 49804225 49804225 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024593 exon5 c.G505T p.D169Y . . . C8orf22 492307 broad.mit.edu 36 8 50149195 50149195 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001007176 exon3 c.C80A p.S27Y . . . SNTG1 54212 broad.mit.edu 36 8 51577903 51577903 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018967 exon9 c.C376T p.R126W . . . SNTG1 54212 broad.mit.edu 36 8 51779745 51779745 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018967 exon16 c.C1071A p.C357X . . . PXDNL 137902 broad.mit.edu 36 8 52395920 52395920 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144651 exon22 c.G4237T p.D1413Y . . . PXDNL 137902 broad.mit.edu 36 8 52483465 52483465 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_144651 exon17 c.T3272C p.I1091T . . . PXDNL 137902 broad.mit.edu 36 8 52498778 52498778 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144651 exon14 c.G1705A p.D569N . . . PCMTD1 115294 broad.mit.edu 36 8 52906664 52906664 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052937 exon5 c.G599A p.R200Q . . . PCMTD1 115294 broad.mit.edu 36 8 52908728 52908728 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052937 exon4 c.G485A p.R162Q . . . ST18 9705 broad.mit.edu 36 8 53191429 53191429 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014682 exon25 c.G2962A p.A988T . . . ST18 9705 broad.mit.edu 36 8 53201251 53201251 + Nonsense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014682 exon23 c.T2669G p.L890X . . . RB1CC1 9821 broad.mit.edu 36 8 53732301 53732301 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001083617 exon15 c.C2641A p.L881I . . . RB1CC1 9821 broad.mit.edu 36 8 53759029 53759029 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001083617 exon4 c.C169T p.R57X . . . OPRK1 4986 broad.mit.edu 36 8 54304563 54304563 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000912 exon4 c.C990T p.Y330Y . . . RGS20 8601 broad.mit.edu 36 8 55029287 55029287 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170587 exon5 c.G842A p.R281Q . . . TCEA1 6917 broad.mit.edu 36 8 55063235 55063235 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_201437 exon4 c.G395A p.R132Q . . . TCEA1 6917 broad.mit.edu 36 8 55068839 55068839 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_201437 exon3 c.G199A p.E67K . . . RP1 6101 broad.mit.edu 36 8 55696622 55696622 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006269 exon2 c.G543T p.E181D . . . RP1 6101 broad.mit.edu 36 8 55699902 55699902 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006269 exon4 c.G907T p.E303X . . . RP1 6101 broad.mit.edu 36 8 55702089 55702089 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006269 exon4 c.A3094G p.N1032D . . . RP1 6101 broad.mit.edu 36 8 55703472 55703472 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006269 exon4 c.T4477A p.L1493I . . . RP1 6101 broad.mit.edu 36 8 55704184 55704184 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006269 exon4 c.G5189T p.R1730I . . . TGS1 96764 broad.mit.edu 36 8 56848771 56848771 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024831 exon1 c.C40A p.L14I . . . TGS1 96764 broad.mit.edu 36 8 56862024 56862024 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024831 exon4 c.C1013T p.S338F . . . TGS1 96764 broad.mit.edu 36 8 56888205 56888205 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024831 exon12 c.C2413A p.L805I . . . PLAG1 5324 broad.mit.edu 36 8 57242555 57242555 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114635 exon3 c.C58A p.H20N . . . SDR16C5 195814 broad.mit.edu 36 8 57381795 57381795 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138969 exon5 c.C704T p.T235I . . . FAM110B 90362 broad.mit.edu 36 8 59222033 59222033 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_147189 exon5 c.C690T p.I230I . . . UBXN2B 137886 broad.mit.edu 36 8 59521124 59521124 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001077619 exon7 c.T776A p.I259N . . . CYP7A1 1581 broad.mit.edu 36 8 59571989 59571989 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000780 exon3 c.C636T p.F212F . . . NSMAF 8439 broad.mit.edu 36 8 59677206 59677206 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003580 exon14 c.G1090A p.G364R . . . NSMAF 8439 broad.mit.edu 36 8 59710473 59710473 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003580 exon4 c.G241T p.D81Y . . . TOX 9760 broad.mit.edu 36 8 59913294 59913294 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014729 exon5 c.C824A p.T275N . . . CHD7 55636 broad.mit.edu 36 8 61856238 61856238 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017780 exon3 c.G1791T p.K597N . . . CHD7 55636 broad.mit.edu 36 8 61856329 61856329 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017780 exon3 c.G1882T p.E628X . . . CHD7 55636 broad.mit.edu 36 8 61897709 61897709 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017780 exon12 c.C3051T p.G1017G . . . ASPH 444 broad.mit.edu 36 8 62659112 62659112 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004318 exon15 c.A1007C p.K336T . . . TTPA 7274 broad.mit.edu 36 8 64141169 64141169 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000370 exon3 c.C400T p.R134X . . . TRIM55 84675 broad.mit.edu 36 8 67209855 67209855 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_184085 exon3 c.G418A p.E140K . . . TRIM55 84675 broad.mit.edu 36 8 67227210 67227210 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_184085 exon8 c.G1030T p.E344X . . . ADHFE1 137872 broad.mit.edu 36 8 67535170 67535170 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144650 exon13 c.C1236T p.F412F . . . VCPIP1 80124 broad.mit.edu 36 8 67709453 67709453 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025054 exon3 c.A3506C p.N1169T . . . VCPIP1 80124 broad.mit.edu 36 8 67709712 67709712 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025054 exon3 c.C3247T p.R1083X . . . SGK3 23678 broad.mit.edu 36 8 67873343 67873343 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033578 exon3 c.C109A p.L37M . . . C8orf45 157777 broad.mit.edu 36 8 67970985 67970985 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_173518 exon11 c.T1306C p.Y436H . . . CSPP1 79848 broad.mit.edu 36 8 68170271 68170271 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024790 exon6 c.G700A p.E234K . . . CSPP1 79848 broad.mit.edu 36 8 68212386 68212386 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024790 exon15 c.C1954A p.L652M . . . CSPP1 79848 broad.mit.edu 36 8 68228907 68228907 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024790 exon17 c.G2208T p.K736N . . . ARFGEF1 10565 broad.mit.edu 36 8 68313168 68313168 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006421 exon22 c.G3253T p.D1085Y . . . ARFGEF1 10565 broad.mit.edu 36 8 68328348 68328348 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006421 exon18 c.G2590T p.D864Y . . . ARFGEF1 10565 broad.mit.edu 36 8 68341954 68341954 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006421 exon12 c.G1738T p.E580X . . . SULF1 23213 broad.mit.edu 36 8 70675434 70675434 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128205 exon9 c.G777T p.W259C . . . SULF1 23213 broad.mit.edu 36 8 70703012 70703012 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128205 exon18 c.C2095A p.L699I . . . SLCO5A1 81796 broad.mit.edu 36 8 70748077 70748077 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001146008 exon8 c.G2063T p.X688L . . . NCOA2 10499 broad.mit.edu 36 8 71231398 71231398 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006540 exon11 c.T1756C p.F586L . . . TRAM1 23471 broad.mit.edu 36 8 71682883 71682883 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014294 exon1 c.C106T p.L36L . . . XKR9 389668 broad.mit.edu 36 8 71755955 71755955 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001011720 exon3 c.A108G p.G36G . . . XKR9 389668 broad.mit.edu 36 8 71809156 71809156 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001011720 exon5 c.A1065C p.E355D . . . TRPA1 8989 broad.mit.edu 36 8 73130281 73130281 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007332 exon12 c.G1473T p.K491N . . . TRPA1 8989 broad.mit.edu 36 8 73130511 73130511 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007332 exon11 c.G1328T p.S443I . . . TRPA1 8989 broad.mit.edu 36 8 73143937 73143937 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007332 exon3 c.G319T p.E107X . . . TRPA1 8989 broad.mit.edu 36 8 73146606 73146606 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007332 exon2 c.G162T p.K54N . . . KCNB2 9312 broad.mit.edu 36 8 73642730 73642730 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004770 exon2 c.A207G p.T69T . . . KCNB2 9312 broad.mit.edu 36 8 74011231 74011231 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004770 exon3 c.A1087G p.T363A . . . TERF1 7013 broad.mit.edu 36 8 74095581 74095581 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017489 exon3 c.T524C p.L175S . . . C8orf84 157869 broad.mit.edu 36 8 74142143 74142143 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_153225 exon5 c.T782C p.F261S . . . TMEM70 54968 broad.mit.edu 36 8 75055969 75055969 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017866 exon3 c.G342A p.T114T . . . PI15 51050 broad.mit.edu 36 8 75920016 75920016 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015886 exon4 c.G491T p.R164I . . . HNF4G 3174 broad.mit.edu 36 8 76633818 76633818 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004133 exon8 c.C1084T p.L362L . . . ZFHX4 79776 broad.mit.edu 36 8 77779435 77779435 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon2 c.C557T p.S186L . . . ZFHX4 79776 broad.mit.edu 36 8 77779589 77779589 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon2 c.G711T p.E237D . . . ZFHX4 79776 broad.mit.edu 36 8 77780752 77780752 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon2 c.C1874T p.S625L . . . ZFHX4 79776 broad.mit.edu 36 8 77782655 77782655 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon3 c.A2910C p.K970N . . . ZFHX4 79776 broad.mit.edu 36 8 77853108 77853108 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon4 c.C3203T p.S1068L . . . ZFHX4 79776 broad.mit.edu 36 8 77927176 77927176 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon10 c.C5464T p.P1822S . . . ZFHX4 79776 broad.mit.edu 36 8 77927699 77927699 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon10 c.C5987T p.S1996F . . . ZFHX4 79776 broad.mit.edu 36 8 77928628 77928628 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon10 c.C6916T p.R2306X . . . ZFHX4 79776 broad.mit.edu 36 8 77930305 77930305 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon10 c.C8593A p.L2865I . . . ZFHX4 79776 broad.mit.edu 36 8 77930397 77930397 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon10 c.C8685T p.N2895N . . . ZFHX4 79776 broad.mit.edu 36 8 77930868 77930868 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon10 c.G9156A p.P3052P . . . ZFHX4 79776 broad.mit.edu 36 8 77938005 77938005 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon11 c.C9500A p.P3167H . . . ZFHX4 79776 broad.mit.edu 36 8 77939274 77939274 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024721 exon11 c.A10769C p.N3590T . . . IL7 3574 broad.mit.edu 36 8 79811270 79811270 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000880 exon5 c.G408T p.K136N . . . STMN2 11075 broad.mit.edu 36 8 80716182 80716182 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007029 exon3 c.C130T p.Q44X . . . ZBTB10 65986 broad.mit.edu 36 8 81574340 81574340 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023929 exon2 c.G1029A p.E343E . . . ZBTB10 65986 broad.mit.edu 36 8 81574742 81574742 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023929 exon2 c.G1431A p.V477V . . . PAG1 55824 broad.mit.edu 36 8 82066306 82066306 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018440 exon5 c.G140A p.R47Q . . . PAG1 55824 broad.mit.edu 36 8 82068008 82068008 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018440 exon4 c.G10A p.A4T . . . FABP9 646480 broad.mit.edu 36 8 82534117 82534117 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080526 exon2 c.C84T p.F28F . . . SLC10A5 347051 broad.mit.edu 36 8 82769002 82769002 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001010893 exon1 c.C761A p.S254Y . . . CHMP4C 92421 broad.mit.edu 36 8 82832985 82832985 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152284 exon4 c.G537T p.K179N . . . RALYL 138046 broad.mit.edu 36 8 85604164 85604164 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100392 exon3 c.C53T p.S18F . . . LRRCC1 85444 broad.mit.edu 36 8 86222988 86222988 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033402 exon7 c.G1019T p.R340I . . . LRRCC1 85444 broad.mit.edu 36 8 86234356 86234356 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_033402 exon13 c.T1991C p.V664A . . . LRRCC1 85444 broad.mit.edu 36 8 86240999 86240999 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_033402 exon18 c.T2971G p.L991V . . . CA3 761 broad.mit.edu 36 8 86539358 86539358 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005181 exon2 c.G200A p.R67Q . . . ATP6V0D2 245972 broad.mit.edu 36 8 87224244 87224244 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152565 exon5 c.A584C p.K195T . . . ATP6V0D2 245972 broad.mit.edu 36 8 87231595 87231595 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152565 exon6 c.G778T p.D260Y . . . WWP1 11059 broad.mit.edu 36 8 87506624 87506624 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007013 exon10 c.G1118A p.R373Q . . . WWP1 11059 broad.mit.edu 36 8 87519970 87519970 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_007013 exon17 c.A1790G p.Y597C . . . WWP1 11059 broad.mit.edu 36 8 87524061 87524061 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007013 exon18 c.G1936A p.A646T . . . CPNE3 8895 broad.mit.edu 36 8 87613865 87613865 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003909 exon6 c.G400T p.E134X . . . CPNE3 8895 broad.mit.edu 36 8 87636261 87636261 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003909 exon15 c.A1187C p.N396T . . . CNGB3 54714 broad.mit.edu 36 8 87660502 87660502 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019098 exon16 c.G1876A p.E626K . . . CNGB3 54714 broad.mit.edu 36 8 87725210 87725210 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019098 exon10 c.C1063T p.R355X . . . CNGB3 54714 broad.mit.edu 36 8 87735385 87735385 + Nonsense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019098 exon7 c.A874T p.K292X . . . CNGB3 54714 broad.mit.edu 36 8 87752316 87752316 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019098 exon4 c.C465A p.L155L . . . MFHAS1 9258 broad.mit.edu 36 8 8787414 8787414 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004225 exon1 c.G565T p.D189Y . . . CNBD1 168975 broad.mit.edu 36 8 88435099 88435099 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173538 exon10 c.G1272A p.E424E . . . DCAF4L2 138009 broad.mit.edu 36 8 88954567 88954567 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152418 exon1 c.G749A p.G250D . . . DCAF4L2 138009 broad.mit.edu 36 8 88954923 88954923 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152418 exon1 c.C393A p.C131X . . . DCAF4L2 138009 broad.mit.edu 36 8 88955199 88955199 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152418 exon1 c.C117T p.F39F . . . ERI1 90459 broad.mit.edu 36 8 8906528 8906528 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153332 exon3 c.A354T p.K118N . . . MMP16 4325 broad.mit.edu 36 8 89198023 89198023 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005941 exon6 c.G912A p.P304P . . . NBN 4683 broad.mit.edu 36 8 91027552 91027552 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002485 exon13 c.T2062G p.F688V . . . DECR1 1666 broad.mit.edu 36 8 91133139 91133139 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001359 exon9 c.G944T p.R315I . . . OTUD6B 51633 broad.mit.edu 36 8 92152631 92152631 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016023 exon2 c.G262T p.E88X . . . RUNX1T1 862 broad.mit.edu 36 8 93086663 93086663 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198626 exon7 c.C597T p.C199C . . . RUNX1T1 862 broad.mit.edu 36 8 93092417 93092417 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198626 exon6 c.C547A p.P183T . . . FAM92A1 137392 broad.mit.edu 36 8 94782703 94782703 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145269 exon2 c.C102T p.F34F . . . RBM12B 389677 broad.mit.edu 36 8 94814834 94814834 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_203390 exon3 c.G2981A p.R994Q . . . PDP1 54704 broad.mit.edu 36 8 95004998 95004998 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161779 exon3 c.G1610A p.R537Q . . . RAD54B 25788 broad.mit.edu 36 8 95473215 95473215 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012415 exon10 c.A1607C p.N536T . . . RAD54B 25788 broad.mit.edu 36 8 95481695 95481695 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012415 exon7 c.G1117T p.E373X . . . KIAA1429 25962 broad.mit.edu 36 8 95591214 95591214 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015496 exon15 c.G3757A p.D1253N . . . KIAA1429 25962 broad.mit.edu 36 8 95591960 95591960 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015496 exon14 c.C3487T p.R1163C . . . KIAA1429 25962 broad.mit.edu 36 8 95592684 95592684 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015496 exon13 c.C3295A p.L1099I . . . KIAA1429 25962 broad.mit.edu 36 8 95608288 95608288 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015496 exon8 c.C1360T p.R454X . . . ESRP1 54845 broad.mit.edu 36 8 95774135 95774135 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017697 exon14 c.C1875T p.S625S . . . DPY19L4 286148 broad.mit.edu 36 8 95865196 95865196 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181787 exon17 c.G1838T p.R613I . . . INTS8 55656 broad.mit.edu 36 8 95913473 95913473 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017864 exon6 c.G648A p.T216T . . . INTS8 55656 broad.mit.edu 36 8 95917984 95917984 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017864 exon7 c.C810A p.V270V . . . CCNE2 9134 broad.mit.edu 36 8 95964290 95964290 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057749 exon10 c.G838T p.D280Y . . . MTERFD1 51001 broad.mit.edu 36 8 97320910 97320910 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015942 exon8 c.C1239A p.F413L . . . PTDSS1 9791 broad.mit.edu 36 8 97385517 97385517 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014754 exon7 c.C826T p.R276X . . . SDC2 6383 broad.mit.edu 36 8 97690818 97690818 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002998 exon5 c.C472A p.L158I . . . MTDH 92140 broad.mit.edu 36 8 98788119 98788119 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178812 exon8 c.C1237A p.L413I . . . MATN2 4147 broad.mit.edu 36 8 99108857 99108857 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030583 exon14 c.C1980T p.I660I . . . C8orf47 203111 broad.mit.edu 36 8 99170846 99170846 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173549 exon2 c.C425A p.S142Y . . . HRSP12 10247 broad.mit.edu 36 8 99184301 99184301 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005836 exon6 c.G359A p.R120Q . . . KCNS2 3788 broad.mit.edu 36 8 99509597 99509597 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020697 exon2 c.G214A p.D72N . . . USP9Y 8287 broad.mit.edu 36 Y 13396850 13396850 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004654 exon18 c.A2383G p.K795E . . . USP9Y 8287 broad.mit.edu 36 Y 13461340 13461340 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004654 exon36 c.G5494T p.A1832S . . . KDM5D 8284 broad.mit.edu 36 Y 20329550 20329550 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004653 exon22 c.C3229A p.L1077I . . . TBL1Y 90665 broad.mit.edu 36 Y 7002631 7002631 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033284 exon13 c.G925T p.E309X . . . SELL 6402 broad.mit.edu 36 1 167937406 167937406 + Frame_Shift_Del DEL G - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_000655 exon7 c.1039delC p.L347fs . . . CACNA1E 777 broad.mit.edu 36 1 180021472 180021472 + Frame_Shift_Del DEL A - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_000721 exon43 c.5680delA p.K1894fs . . . AGL 178 broad.mit.edu 36 1 100151747 100151747 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000645 exon28 c.C3975T p.S1325S . . . AGL 178 broad.mit.edu 36 1 100154854 100154854 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000645 exon31 c.G4409A p.R1470Q . . . HIAT1 64645 broad.mit.edu 36 1 100306181 100306181 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033055 exon6 c.C547T p.R183X . . . SASS6 163786 broad.mit.edu 36 1 100359548 100359548 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194292 exon5 c.C457A p.L153I . . . RTCD1 8634 broad.mit.edu 36 1 100529564 100529564 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003729 exon11 c.G1017T p.K339N . . . UBE4B 10277 broad.mit.edu 36 1 10083812 10083812 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105562 exon4 c.G407A p.R136Q . . . UBE4B 10277 broad.mit.edu 36 1 10100209 10100209 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105562 exon8 c.C1302T p.F434F . . . EXTL2 2135 broad.mit.edu 36 1 101115821 101115821 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033025 exon3 c.C232A p.L78I . . . EXTL2 2135 broad.mit.edu 36 1 101115965 101115965 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033025 exon3 c.T88G p.L30V . . . SLC30A7 148867 broad.mit.edu 36 1 101204049 101204049 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133496 exon10 c.A1070C p.N357T . . . DPH5 51611 broad.mit.edu 36 1 101259867 101259867 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077394 exon3 c.G178T p.E60X . . . S1PR1 1901 broad.mit.edu 36 1 101478079 101478079 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001400 exon2 c.G951T p.E317D . . . OLFM3 118427 broad.mit.edu 36 1 102042462 102042462 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058170 exon6 c.C1297A p.L433I . . . KIF1B 23095 broad.mit.edu 36 1 10241180 10241180 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015074 exon4 c.G226T p.D76Y . . . KIF1B 23095 broad.mit.edu 36 1 10286809 10286809 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183416 exon21 c.C2979T p.D993D . . . COL11A1 1301 broad.mit.edu 36 1 103260993 103260993 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001854 exon8 c.G1138A p.E380K . . . COL11A1 1301 broad.mit.edu 36 1 103263667 103263667 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001854 exon7 c.G988T p.E330X . . . COL11A1 1301 broad.mit.edu 36 1 103312897 103312897 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001854 exon4 c.G516T p.E172D . . . AMY2A 279 broad.mit.edu 36 1 103961718 103961718 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000699 exon1 c.C133T p.R45X . . . DFFA 1676 broad.mit.edu 36 1 10451890 10451890 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004401 exon2 c.C229A p.L77M . . . NTNG1 22854 broad.mit.edu 36 1 107780845 107780845 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001113226 exon7 c.C1291T p.R431C . . . VAV3 10451 broad.mit.edu 36 1 108308978 108308978 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006113 exon1 c.C37A p.H13N . . . SLC25A24 29957 broad.mit.edu 36 1 108492526 108492526 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013386 exon7 c.G828T p.K276N . . . SLC25A24 29957 broad.mit.edu 36 1 108499147 108499147 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013386 exon6 c.A803C p.K268T . . . AKNAD1 254268 broad.mit.edu 36 1 109167723 109167723 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152763 exon12 c.G2047T p.E683X . . . AKNAD1 254268 broad.mit.edu 36 1 109192950 109192950 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152763 exon5 c.T1192C p.F398L . . . CLCC1 23155 broad.mit.edu 36 1 109287718 109287718 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001048210 exon6 c.G604A p.E202K . . . C1orf127 148345 broad.mit.edu 36 1 10931422 10931422 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001170754 exon12 c.C1357A p.L453I . . . WDR47 22911 broad.mit.edu 36 1 109325953 109325953 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014969 exon13 c.G2326T p.D776Y . . . C1orf127 148345 broad.mit.edu 36 1 10940376 10940376 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170754 exon7 c.C577T p.R193X . . . C1orf194 127003 broad.mit.edu 36 1 109452070 109452070 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001122961 exon2 c.C158T p.P53L . . . KIAA1324 57535 broad.mit.edu 36 1 109508836 109508836 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020775 exon3 c.C467T p.S156L . . . KIAA1324 57535 broad.mit.edu 36 1 109544956 109544956 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020775 exon21 c.G2884A p.A962T . . . SARS 6301 broad.mit.edu 36 1 109581909 109581909 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006513 exon11 c.C1421T p.A474V . . . CELSR2 1952 broad.mit.edu 36 1 109605379 109605379 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001408 exon3 c.G4151A p.R1384H . . . CELSR2 1952 broad.mit.edu 36 1 109610311 109610311 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001408 exon15 c.C5973T p.F1991F . . . SORT1 6272 broad.mit.edu 36 1 109686212 109686212 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002959 exon9 c.C1055A p.S352Y . . . CYB561D1 284613 broad.mit.edu 36 1 109839957 109839957 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001134403 exon4 c.C347T p.S116F . . . AMIGO1 57463 broad.mit.edu 36 1 109851995 109851995 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020703 exon2 c.G1063A p.E355K . . . GNAT2 2780 broad.mit.edu 36 1 109950472 109950472 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005272 exon5 c.G571A p.V191I . . . GSTM3 2947 broad.mit.edu 36 1 110081300 110081300 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000849 exon9 c.C594T p.I198I . . . GSTM3 2947 broad.mit.edu 36 1 110082250 110082250 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000849 exon6 c.T358C p.Y120H . . . MASP2 10747 broad.mit.edu 36 1 11009553 11009553 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006610 exon11 c.C2037T p.I679I . . . UBL4B 164153 broad.mit.edu 36 1 110456907 110456907 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_203412 exon1 c.G228T p.K76N . . . SLC6A17 388662 broad.mit.edu 36 1 110539780 110539780 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010898 exon10 c.C1542T p.R514R . . . RBM15 64783 broad.mit.edu 36 1 110685996 110685996 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022768 exon1 c.C2446A p.L816I . . . SLC16A4 9122 broad.mit.edu 36 1 110723260 110723260 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004696 exon6 c.A768C p.Q256H . . . KCNA10 3744 broad.mit.edu 36 1 110861873 110861873 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005549 exon1 c.C1060T p.L354F . . . KCNA10 3744 broad.mit.edu 36 1 110862479 110862479 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005549 exon1 c.C454T p.R152W . . . KCNA2 3737 broad.mit.edu 36 1 110947783 110947783 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004974 exon2 c.C1145T p.P382L . . . KCNA3 3738 broad.mit.edu 36 1 111017375 111017375 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002232 exon1 c.C1580T p.S527L . . . KCNA3 3738 broad.mit.edu 36 1 111017960 111017960 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_002232 exon1 c.A995G p.D332G . . . MTOR 2475 broad.mit.edu 36 1 11111591 11111591 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004958 exon41 c.C5719T p.L1907F . . . CD53 963 broad.mit.edu 36 1 111240867 111240867 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000560 exon6 c.C493T p.R165X . . . C1orf103 55791 broad.mit.edu 36 1 111292368 111292368 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018372 exon4 c.G2046A p.T682T . . . C1orf103 55791 broad.mit.edu 36 1 111295992 111295992 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018372 exon2 c.G1037A p.R346Q . . . C1orf103 55791 broad.mit.edu 36 1 111296604 111296604 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018372 exon2 c.T425G p.I142S . . . C1orf103 55791 broad.mit.edu 36 1 111296931 111296931 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018372 exon2 c.A98G p.Q33R . . . CHI3L2 1117 broad.mit.edu 36 1 111575005 111575005 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004000 exon3 c.C189T p.F63F . . . CHIA 27159 broad.mit.edu 36 1 111656486 111656486 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_201653 exon4 c.C207T p.I69I . . . OVGP1 5016 broad.mit.edu 36 1 111759327 111759327 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002557 exon11 c.A1319C p.E440A . . . RAP1A 5906 broad.mit.edu 36 1 112041619 112041619 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010935 exon5 c.G160A p.E54K . . . DDX20 11218 broad.mit.edu 36 1 112104912 112104912 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007204 exon5 c.G742A p.E248K . . . KCND3 3752 broad.mit.edu 36 1 112124893 112124893 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004980 exon4 c.C1313T p.S438L . . . WNT2B 7482 broad.mit.edu 36 1 112859137 112859137 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004185 exon3 c.C244T p.R82X . . . MOV10 4343 broad.mit.edu 36 1 113042239 113042239 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020963 exon15 c.G2299A p.A767T . . . MOV10 4343 broad.mit.edu 36 1 113042605 113042605 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020963 exon16 c.C2490T p.I830I . . . SLC16A1 6566 broad.mit.edu 36 1 113258255 113258255 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166496 exon5 c.C1284T p.V428V . . . MAGI3 260425 broad.mit.edu 36 1 114003296 114003296 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152900 exon16 c.G2701T p.D901Y . . . MAGI3 260425 broad.mit.edu 36 1 114003358 114003358 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152900 exon16 c.G2763T p.Q921H . . . PHTF1 10745 broad.mit.edu 36 1 114054610 114054610 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006608 exon10 c.C1058T p.S353L . . . PHTF1 10745 broad.mit.edu 36 1 114068930 114068930 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006608 exon6 c.T597C p.G199G . . . PTPN22 26191 broad.mit.edu 36 1 114177271 114177271 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012411 exon14 c.C1873T p.R625X . . . BCL2L15 440603 broad.mit.edu 36 1 114225966 114225966 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010922 exon3 c.C426A p.I142I . . . HIPK1 204851 broad.mit.edu 36 1 114314217 114314217 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198269 exon13 c.G1766A p.G589D . . . OLFML3 56944 broad.mit.edu 36 1 114324724 114324724 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020190 exon2 c.G362A p.G121D . . . SYT6 148281 broad.mit.edu 36 1 114484013 114484013 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_205848 exon2 c.C4T p.P2S . . . TRIM33 51592 broad.mit.edu 36 1 114741940 114741940 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015906 exon20 c.G3237T p.E1079D . . . TRIM33 51592 broad.mit.edu 36 1 114769737 114769737 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015906 exon9 c.C1552A p.H518N . . . DENND2C 163259 broad.mit.edu 36 1 114967667 114967667 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198459 exon3 c.C927A p.I309I . . . PTCHD2 57540 broad.mit.edu 36 1 11497083 11497083 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020780 exon4 c.C1366T p.R456C . . . AMPD1 270 broad.mit.edu 36 1 115017827 115017827 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000036 exon15 c.G2140A p.E714K . . . CSDE1 7812 broad.mit.edu 36 1 115068093 115068093 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130523 exon16 c.C1852T p.R618C . . . SYCP1 6847 broad.mit.edu 36 1 115203932 115203932 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003176 exon7 c.G502T p.E168X . . . SYCP1 6847 broad.mit.edu 36 1 115231779 115231779 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003176 exon15 c.A1200C p.K400N . . . SYCP1 6847 broad.mit.edu 36 1 115255701 115255701 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003176 exon18 c.C1504A p.L502I . . . SYCP1 6847 broad.mit.edu 36 1 115288521 115288521 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003176 exon24 c.G1965T p.Q655H . . . SYCP1 6847 broad.mit.edu 36 1 115289076 115289076 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003176 exon25 c.C2104T p.R702X . . . SYCP1 6847 broad.mit.edu 36 1 115291454 115291454 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003176 exon27 c.G2312T p.R771I . . . CASQ2 845 broad.mit.edu 36 1 116077101 116077101 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001232 exon5 c.G550T p.E184X . . . CASQ2 845 broad.mit.edu 36 1 116082425 116082425 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001232 exon4 c.G475A p.E159K . . . SLC22A15 55356 broad.mit.edu 36 1 116364873 116364873 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018420 exon4 c.C442T p.L148F . . . SLC22A15 55356 broad.mit.edu 36 1 116371040 116371040 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018420 exon5 c.C602T p.S201L . . . ATP1A1 476 broad.mit.edu 36 1 116734989 116734989 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000701 exon10 c.A1285G p.N429D . . . ATP1A1 476 broad.mit.edu 36 1 116745325 116745325 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000701 exon20 c.C2769T p.F923F . . . CD58 965 broad.mit.edu 36 1 116866081 116866081 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001779 exon4 c.A676C p.I226L . . . IGSF3 3321 broad.mit.edu 36 1 116944438 116944438 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001542 exon8 c.C1737T p.S579S . . . IGSF3 3321 broad.mit.edu 36 1 116958010 116958010 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001542 exon4 c.C732A p.F244L . . . PTGFRN 5738 broad.mit.edu 36 1 117311088 117311088 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020440 exon6 c.A1672C p.K558Q . . . CD101 9398 broad.mit.edu 36 1 117345996 117345996 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004258 exon1 c.C34A p.L12I . . . CD101 9398 broad.mit.edu 36 1 117354224 117354224 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004258 exon2 c.C273T p.S91S . . . CD101 9398 broad.mit.edu 36 1 117357556 117357556 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004258 exon4 c.G847T p.D283Y . . . CD101 9398 broad.mit.edu 36 1 117361467 117361467 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004258 exon5 c.G1461T p.E487D . . . TTF2 8458 broad.mit.edu 36 1 117417826 117417826 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003594 exon4 c.G239T p.R80I . . . TTF2 8458 broad.mit.edu 36 1 117434204 117434204 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003594 exon14 c.C2347A p.L783I . . . TTF2 8458 broad.mit.edu 36 1 117445601 117445601 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003594 exon23 c.C3421A p.L1141I . . . MAN1A2 10905 broad.mit.edu 36 1 117764747 117764747 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006699 exon5 c.C808A p.R270R . . . MTHFR 4524 broad.mit.edu 36 1 11777469 11777469 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005957 exon7 c.G1070A p.R357H . . . CLCN6 1185 broad.mit.edu 36 1 11808854 11808854 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021737 exon9 c.G703A p.D235N . . . CLCN6 1185 broad.mit.edu 36 1 11811929 11811929 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001286 exon13 c.C1211A p.S404Y . . . GDAP2 54834 broad.mit.edu 36 1 118256139 118256139 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017686 exon5 c.C559T p.R187C . . . SPAG17 200162 broad.mit.edu 36 1 118310767 118310767 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206996 exon47 c.C6520A p.P2174T . . . SPAG17 200162 broad.mit.edu 36 1 118325424 118325424 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_206996 exon43 c.C5996A p.S1999Y . . . SPAG17 200162 broad.mit.edu 36 1 118331994 118331994 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206996 exon40 c.G5655T p.K1885N . . . SPAG17 200162 broad.mit.edu 36 1 118336762 118336762 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_206996 exon36 c.G5211A p.Q1737Q . . . SPAG17 200162 broad.mit.edu 36 1 118360161 118360161 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206996 exon29 c.G4237T p.D1413Y . . . SPAG17 200162 broad.mit.edu 36 1 118386167 118386167 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206996 exon21 c.C2836T p.R946X . . . SPAG17 200162 broad.mit.edu 36 1 118400008 118400008 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_206996 exon19 c.G2593T p.E865X . . . TBX15 6913 broad.mit.edu 36 1 119258277 119258277 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152380 exon6 c.G592T p.D198Y . . . WARS2 10352 broad.mit.edu 36 1 119420742 119420742 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201263 exon2 c.G102T p.K34N . . . HSD3B2 3284 broad.mit.edu 36 1 119766742 119766742 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001166120 exon4 c.G1095T p.E365D . . . HSD3B1 3283 broad.mit.edu 36 1 119851688 119851688 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000862 exon2 c.C66T p.L22L . . . ZNF697 90874 broad.mit.edu 36 1 119967151 119967151 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080470 exon3 c.C1338T p.F446F . . . HMGCS2 3158 broad.mit.edu 36 1 120112911 120112911 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166107 exon1 c.G80A p.R27H . . . REG4 83998 broad.mit.edu 36 1 120144006 120144006 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032044 exon4 c.C168T p.L56L . . . ADAM30 11085 broad.mit.edu 36 1 120239542 120239542 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021794 exon1 c.C941A p.S314Y . . . ADAM30 11085 broad.mit.edu 36 1 120239624 120239624 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021794 exon1 c.C859T p.R287C . . . NOTCH2 4853 broad.mit.edu 36 1 120260762 120260762 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024408 exon34 c.C6106T p.R2036X . . . TNFRSF8 943 broad.mit.edu 36 1 12105978 12105978 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001243 exon9 c.C997T p.P333S . . . VPS13D 55187 broad.mit.edu 36 1 12265783 12265783 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018156 exon21 c.G5037T p.K1679N . . . AADACL3 126767 broad.mit.edu 36 1 12702252 12702252 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001103170 exon2 c.C186T p.H62H . . . AADACL3 126767 broad.mit.edu 36 1 12708042 12708042 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001103169 exon3 c.A335C p.K112T . . . PRAMEF12 390999 broad.mit.edu 36 1 12758447 12758447 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080830 exon2 c.G462T p.K154N . . . PRAMEF1 65121 broad.mit.edu 36 1 12777028 12777028 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023013 exon3 c.G665T p.R222I . . . PRAMEF2 65122 broad.mit.edu 36 1 12842417 12842417 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023014 exon3 c.G570A p.T190T . . . PRAMEF4 400735 broad.mit.edu 36 1 12864523 12864523 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001009611 exon3 c.A614G p.N205S . . . PRAMEF10 343071 broad.mit.edu 36 1 12875406 12875406 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039361 exon4 c.C1353A p.F451L . . . PRAMEF8 391002 broad.mit.edu 36 1 12902395 12902395 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001012277 exon3 c.T1000G p.F334V . . . PRAMEF14 729528 broad.mit.edu 36 1 13320908 13320908 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099854 exon4 c.G1010A p.G337D . . . PRDM2 7799 broad.mit.edu 36 1 13980715 13980715 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001007257 exon3 c.A3235G p.I1079V . . . PDE4DIP 9659 broad.mit.edu 36 1 143787113 143787113 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022359 exon1 c.C107T p.A36V . . . SEC22B 9554 broad.mit.edu 36 1 143827229 143827229 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004892 exon5 c.C631T p.R211X . . . NOTCH2NL 388677 broad.mit.edu 36 1 143992808 143992808 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_203458 exon4 c.C381T p.F127F . . . HFE2 148738 broad.mit.edu 36 1 144126872 144126872 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_213653 exon3 c.G334T p.D112Y . . . LIX1L 128077 broad.mit.edu 36 1 144203633 144203633 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153713 exon3 c.G498T p.K166N . . . LIX1L 128077 broad.mit.edu 36 1 144210102 144210102 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153713 exon6 c.G981A p.G327G . . . ITGA10 8515 broad.mit.edu 36 1 144249372 144249372 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003637 exon22 c.T2694G p.F898L . . . ITGA10 8515 broad.mit.edu 36 1 144250105 144250105 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003637 exon24 c.G2859T p.E953D . . . ANKRD35 148741 broad.mit.edu 36 1 144272939 144272939 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144698 exon10 c.G1270A p.E424K . . . ANKRD35 148741 broad.mit.edu 36 1 144273517 144273517 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144698 exon10 c.G1848T p.E616D . . . CD160 11126 broad.mit.edu 36 1 144415496 144415496 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007053 exon4 c.C278A p.S93Y . . . FMO5 2330 broad.mit.edu 36 1 145139667 145139667 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001461 exon7 c.C874A p.R292S . . . CHD1L 9557 broad.mit.edu 36 1 145202707 145202707 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004284 exon7 c.C579T p.F193F . . . CHD1L 9557 broad.mit.edu 36 1 145232780 145232780 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004284 exon22 c.C2572A p.L858I . . . BCL9 607 broad.mit.edu 36 1 145551482 145551482 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004326 exon5 c.C230T p.P77L . . . BCL9 607 broad.mit.edu 36 1 145557328 145557328 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004326 exon8 c.C743A p.S248Y . . . GJA8 2703 broad.mit.edu 36 1 145846862 145846862 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005267 exon2 c.C156T p.F52F . . . NBPF15 284565 broad.mit.edu 36 1 146861089 146861089 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102663 exon16 c.C1838T p.S613L . . . OTUD7B 56957 broad.mit.edu 36 1 148183263 148183263 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020205 exon12 c.A1649T p.K550M . . . RPRD2 23248 broad.mit.edu 36 1 148680052 148680052 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015203 exon3 c.G365A p.R122Q . . . RPRD2 23248 broad.mit.edu 36 1 148710525 148710525 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015203 exon11 c.C2477A p.S826Y . . . TARS2 80222 broad.mit.edu 36 1 148729808 148729808 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025150 exon4 c.C495A p.F165L . . . ADAMTSL4 54507 broad.mit.edu 36 1 148792984 148792984 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019032 exon6 c.G893A p.R298H . . . ENSA 2029 broad.mit.edu 36 1 148868547 148868547 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207044 exon1 c.G24T p.E8D . . . GOLPH3L 55204 broad.mit.edu 36 1 148887677 148887677 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018178 exon5 c.A602C p.K201T . . . ARNT 405 broad.mit.edu 36 1 149078696 149078696 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001197325 exon5 c.G286T p.E96X . . . FAM63A 55793 broad.mit.edu 36 1 149241573 149241573 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018379 exon3 c.G145T p.E49X . . . PRUNE 58497 broad.mit.edu 36 1 149273019 149273019 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021222 exon8 c.G1047T p.K349N . . . MLLT11 10962 broad.mit.edu 36 1 149306448 149306448 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006818 exon2 c.G124T p.D42Y . . . MLLT11 10962 broad.mit.edu 36 1 149306580 149306580 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006818 exon2 c.G256A p.E86K . . . GABPB2 126626 broad.mit.edu 36 1 149332330 149332330 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144618 exon4 c.G315T p.M105I . . . POGZ 23126 broad.mit.edu 36 1 149644915 149644915 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145796 exon17 c.C2935T p.R979C . . . POGZ 23126 broad.mit.edu 36 1 149667370 149667370 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145796 exon4 c.C427T p.R143X . . . THEM4 117145 broad.mit.edu 36 1 150127408 150127408 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_053055 exon4 c.C522T p.I174I . . . TCHHL1 126637 broad.mit.edu 36 1 150325787 150325787 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008536 exon3 c.A995G p.D332G . . . HRNR 388697 broad.mit.edu 36 1 150459281 150459281 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009931 exon3 c.C1448A p.S483Y . . . HRNR 388697 broad.mit.edu 36 1 150459632 150459632 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009931 exon3 c.C1097A p.S366Y . . . FLG 2312 broad.mit.edu 36 1 150542214 150542214 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002016 exon3 c.C11772A p.T3924T . . . FLG 2312 broad.mit.edu 36 1 150542860 150542860 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002016 exon3 c.C11126A p.S3709Y . . . FLG 2312 broad.mit.edu 36 1 150543187 150543187 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002016 exon3 c.C10799T p.T3600I . . . FLG 2312 broad.mit.edu 36 1 150546633 150546633 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002016 exon3 c.G7353A p.R2451R . . . FLG 2312 broad.mit.edu 36 1 150547363 150547363 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002016 exon3 c.C6623T p.S2208L . . . FLG 2312 broad.mit.edu 36 1 150549979 150549979 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002016 exon3 c.C4007T p.S1336F . . . FLG 2312 broad.mit.edu 36 1 150551146 150551146 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002016 exon3 c.G2840A p.S947N . . . FLG 2312 broad.mit.edu 36 1 150551320 150551320 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002016 exon3 c.C2666T p.S889F . . . FLG 2312 broad.mit.edu 36 1 150554433 150554433 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002016 exon2 c.C124T p.R42W . . . FLG2 388698 broad.mit.edu 36 1 150589741 150589741 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014342 exon3 c.G7145A p.S2382N . . . FLG2 388698 broad.mit.edu 36 1 150590497 150590497 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014342 exon3 c.G6389T p.R2130I . . . FLG2 388698 broad.mit.edu 36 1 150591813 150591813 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001014342 exon3 c.A5073G p.R1691R . . . FLG2 388698 broad.mit.edu 36 1 150591934 150591934 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001014342 exon3 c.C4952A p.S1651Y . . . FLG2 388698 broad.mit.edu 36 1 150592031 150592031 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014342 exon3 c.A4855G p.T1619A . . . FLG2 388698 broad.mit.edu 36 1 150592509 150592509 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001014342 exon3 c.C4377T p.S1459S . . . FLG2 388698 broad.mit.edu 36 1 150593472 150593472 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014342 exon3 c.C3414A p.S1138S . . . FLG2 388698 broad.mit.edu 36 1 150595840 150595840 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014342 exon3 c.C1046A p.S349Y . . . KPRP 448834 broad.mit.edu 36 1 150999611 150999611 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025231 exon2 c.G923A p.R308H . . . LCE1A 353131 broad.mit.edu 36 1 151066628 151066628 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_178348 exon1 c.A56C p.K19T . . . PGLYRP4 57115 broad.mit.edu 36 1 151582201 151582201 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020393 exon5 c.G461A p.G154D . . . C1orf77 26097 broad.mit.edu 36 1 151877448 151877448 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015607 exon3 c.C119T p.S40L . . . SLC27A3 11000 broad.mit.edu 36 1 152015641 152015641 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024330 exon2 c.G832A p.D278N . . . NUP210L 91181 broad.mit.edu 36 1 152295946 152295946 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207308 exon23 c.G3209T p.R1070I . . . UBAP2L 9898 broad.mit.edu 36 1 152507868 152507868 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014847 exon26 c.G2982A p.E994E . . . ATP8B2 57198 broad.mit.edu 36 1 152570777 152570777 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005855 exon7 c.C437T p.A146V . . . ATP8B2 57198 broad.mit.edu 36 1 152573651 152573651 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005855 exon11 c.G797A p.R266K . . . ATP8B2 57198 broad.mit.edu 36 1 152576640 152576640 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005855 exon12 c.G1030A p.V344I . . . ATP8B2 57198 broad.mit.edu 36 1 152582393 152582393 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020452 exon16 c.C1733T p.S578L . . . KAZ 23254 broad.mit.edu 36 1 15264769 15264769 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_201628 exon8 c.C1155T p.F385F . . . SHE 126669 broad.mit.edu 36 1 152728430 152728430 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001010846 exon3 c.C745T p.P249S . . . TDRD10 126668 broad.mit.edu 36 1 152783959 152783959 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182499 exon11 c.G862A p.A288T . . . CHRNB2 1141 broad.mit.edu 36 1 152810447 152810447 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000748 exon5 c.C524T p.S175L . . . CHRNB2 1141 broad.mit.edu 36 1 152810781 152810781 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000748 exon5 c.C858T p.I286I . . . ADAR 103 broad.mit.edu 36 1 152841000 152841000 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015841 exon2 c.G742A p.V248I . . . ADAR 103 broad.mit.edu 36 1 152841337 152841337 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015841 exon2 c.C405A p.I135I . . . KAZ 23254 broad.mit.edu 36 1 15300824 15300824 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_201628 exon11 c.C1746T p.I582I . . . KCNN3 3782 broad.mit.edu 36 1 153108800 153108800 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002249 exon1 c.G265A p.A89T . . . DCST2 127579 broad.mit.edu 36 1 153269678 153269678 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144622 exon6 c.C873A p.F291L . . . DCST1 149095 broad.mit.edu 36 1 153281845 153281845 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143687 exon8 c.T828G p.V276V . . . ADAM15 8751 broad.mit.edu 36 1 153295182 153295182 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207195 exon9 c.C747A p.F249L . . . ADAM15 8751 broad.mit.edu 36 1 153297232 153297232 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207195 exon14 c.C1698T p.G566G . . . THBS3 7059 broad.mit.edu 36 1 153437566 153437566 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007112 exon12 c.C1383T p.I461I . . . HCN3 57657 broad.mit.edu 36 1 153519178 153519178 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020897 exon2 c.C631T p.R211C . . . PKLR 5313 broad.mit.edu 36 1 153530986 153530986 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000298 exon6 c.C876T p.S292S . . . PKLR 5313 broad.mit.edu 36 1 153532089 153532089 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000298 exon3 c.C366T p.G122G . . . RUSC1 23623 broad.mit.edu 36 1 153564649 153564649 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014328 exon8 c.G1092A p.Q364Q . . . ASH1L 55870 broad.mit.edu 36 1 153607295 153607295 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018489 exon11 c.C6436T p.R2146X . . . ASH1L 55870 broad.mit.edu 36 1 153614797 153614797 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018489 exon10 c.C6231T p.Y2077Y . . . ASH1L 55870 broad.mit.edu 36 1 153614924 153614924 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018489 exon9 c.C6217T p.R2073C . . . ASH1L 55870 broad.mit.edu 36 1 153716334 153716334 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018489 exon3 c.G2951A p.R984H . . . YY1AP1 55249 broad.mit.edu 36 1 153915870 153915870 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198906 exon4 c.C277T p.R93C . . . GON4L 54856 broad.mit.edu 36 1 153988638 153988638 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001037533 exon30 c.A6207G p.K2069K . . . GON4L 54856 broad.mit.edu 36 1 154002167 154002167 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032292 exon21 c.G3721T p.A1241S . . . GON4L 54856 broad.mit.edu 36 1 154063276 154063276 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032292 exon3 c.G673T p.D225Y . . . RIT1 6016 broad.mit.edu 36 1 154136817 154136817 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006912 exon6 c.G646T p.D216Y . . . KIAA0907 22889 broad.mit.edu 36 1 154162227 154162227 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014949 exon7 c.G713A p.G238D . . . ROBLD3 28956 broad.mit.edu 36 1 154291706 154291706 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145264 exon2 c.G97T p.A33S . . . MEX3A 92312 broad.mit.edu 36 1 154313624 154313624 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001093725 exon2 c.G928A p.D310N . . . SEMA4A 64218 broad.mit.edu 36 1 154413099 154413099 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022367 exon15 c.G1973A p.R658Q . . . RHBG 57127 broad.mit.edu 36 1 154621202 154621202 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020407 exon10 c.G1319A p.R440Q . . . IQGAP3 128239 broad.mit.edu 36 1 154788505 154788505 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178229 exon14 c.C1455T p.F485F . . . BCAN 63827 broad.mit.edu 36 1 154888689 154888689 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021948 exon8 c.G1323A p.P441P . . . NES 10763 broad.mit.edu 36 1 154907138 154907138 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006617 exon4 c.G3466A p.E1156K . . . SH2D2A 9047 broad.mit.edu 36 1 155046187 155046187 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161443 exon5 c.G520T p.E174X . . . INSRR 3645 broad.mit.edu 36 1 155082950 155082950 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014215 exon8 c.C1795T p.R599X . . . ARHGEF11 9826 broad.mit.edu 36 1 155177811 155177811 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198236 exon35 c.C3491A p.P1164H . . . ETV3 2117 broad.mit.edu 36 1 155370577 155370577 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145312 exon4 c.C351A p.F117L . . . FCRL5 83416 broad.mit.edu 36 1 155775611 155775611 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031281 exon7 c.G1291T p.G431X . . . FCRL3 115352 broad.mit.edu 36 1 155915266 155915266 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052939 exon15 c.T2063G p.L688R . . . FCRL3 115352 broad.mit.edu 36 1 155932469 155932469 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052939 exon7 c.C1117T p.R373X . . . FCRL3 115352 broad.mit.edu 36 1 155933571 155933571 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052939 exon6 c.C827A p.S276Y . . . FCRL2 79368 broad.mit.edu 36 1 156006289 156006289 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030764 exon4 c.C586A p.H196N . . . FCRL2 79368 broad.mit.edu 36 1 156006999 156006999 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030764 exon3 c.A134C p.K45T . . . CD5L 922 broad.mit.edu 36 1 156069758 156069758 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005894 exon5 c.G887T p.R296I . . . CD5L 922 broad.mit.edu 36 1 156072530 156072530 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005894 exon3 c.G95A p.R32H . . . CD1D 912 broad.mit.edu 36 1 156419302 156419302 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001766 exon5 c.G618T p.K206N . . . CD1A 909 broad.mit.edu 36 1 156491536 156491536 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001763 exon2 c.G97A p.A33T . . . CD1C 911 broad.mit.edu 36 1 156527810 156527810 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001765 exon2 c.G324A p.S108S . . . OR10T2 128360 broad.mit.edu 36 1 156635244 156635244 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004475 exon1 c.C637A p.L213M . . . OR10R2 343406 broad.mit.edu 36 1 156716301 156716301 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001004472 exon1 c.A10C p.I4L . . . OR6Y1 391112 broad.mit.edu 36 1 156784295 156784295 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005189 exon1 c.G225T p.E75D . . . OR10Z1 128368 broad.mit.edu 36 1 156843557 156843557 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004478 exon1 c.G705T p.K235N . . . SPTA1 6708 broad.mit.edu 36 1 156876305 156876305 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003126 exon34 c.C4854T p.D1618D . . . SPTA1 6708 broad.mit.edu 36 1 156889048 156889048 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003126 exon23 c.C3208T p.R1070W . . . SPTA1 6708 broad.mit.edu 36 1 156889789 156889789 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003126 exon22 c.C3087A p.V1029V . . . SPTA1 6708 broad.mit.edu 36 1 156905839 156905839 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003126 exon14 c.G1816T p.D606Y . . . OR6K2 81448 broad.mit.edu 36 1 156936697 156936697 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005279 exon1 c.G370A p.A124T . . . OR6K6 128371 broad.mit.edu 36 1 156991616 156991616 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005184 exon1 c.G387T p.M129I . . . OR6N1 128372 broad.mit.edu 36 1 157002510 157002510 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005185 exon1 c.T587C p.V196A . . . MNDA 4332 broad.mit.edu 36 1 157082041 157082041 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002432 exon5 c.G611T p.R204I . . . MNDA 4332 broad.mit.edu 36 1 157084315 157084315 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002432 exon6 c.T1161G p.S387R . . . PYHIN1 149628 broad.mit.edu 36 1 157178674 157178674 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198930 exon5 c.C836T p.S279F . . . PYHIN1 149628 broad.mit.edu 36 1 157180221 157180221 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198930 exon6 c.G993T p.K331N . . . DNAJC16 23341 broad.mit.edu 36 1 15728300 15728300 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015291 exon2 c.G113A p.R38Q . . . CADM3 57863 broad.mit.edu 36 1 157430341 157430341 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021189 exon6 c.C680T p.S227L . . . CADM3 57863 broad.mit.edu 36 1 157430446 157430446 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021189 exon6 c.A785C p.E262A . . . CADM3 57863 broad.mit.edu 36 1 157436220 157436220 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021189 exon9 c.C1110T p.I370I . . . DNAJC16 23341 broad.mit.edu 36 1 15745929 15745929 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015291 exon6 c.G840A p.T280T . . . FCER1A 2205 broad.mit.edu 36 1 157542531 157542531 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002001 exon5 c.A461G p.Y154C . . . AGMAT 79814 broad.mit.edu 36 1 15782374 15782374 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024758 exon2 c.G376A p.D126N . . . FCRL6 343413 broad.mit.edu 36 1 158050663 158050663 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004310 exon8 c.T1104G p.G368G . . . CCDC19 25790 broad.mit.edu 36 1 158112984 158112984 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012337 exon10 c.C1338T p.F446F . . . CCDC19 25790 broad.mit.edu 36 1 158113814 158113814 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012337 exon9 c.C1107T p.I369I . . . TAGLN2 8407 broad.mit.edu 36 1 158156193 158156193 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003564 exon3 c.G237T p.K79N . . . IGSF9 57549 broad.mit.edu 36 1 158164602 158164602 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135050 exon19 c.G3200A p.R1067Q . . . PIGM 93183 broad.mit.edu 36 1 158266898 158266898 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145167 exon1 c.G1256T p.R419I . . . PIGM 93183 broad.mit.edu 36 1 158267602 158267602 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145167 exon1 c.G552T p.V184V . . . PIGM 93183 broad.mit.edu 36 1 158268052 158268052 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145167 exon1 c.C102A p.F34L . . . ATP1A2 477 broad.mit.edu 36 1 158366583 158366583 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000702 exon12 c.G1529A p.R510H . . . ATP1A2 477 broad.mit.edu 36 1 158371962 158371962 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000702 exon16 c.G2230A p.D744N . . . ATP1A2 477 broad.mit.edu 36 1 158372263 158372263 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000702 exon17 c.C2295A p.I765I . . . ATP1A2 477 broad.mit.edu 36 1 158376140 158376140 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000702 exon21 c.G2927A p.R976H . . . ATP1A2 477 broad.mit.edu 36 1 158376370 158376370 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000702 exon22 c.A3006G p.R1002R . . . ATP1A4 480 broad.mit.edu 36 1 158395479 158395479 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144699 exon5 c.G589T p.D197Y . . . ATP1A4 480 broad.mit.edu 36 1 158400679 158400679 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144699 exon7 c.C888T p.I296I . . . ATP1A4 480 broad.mit.edu 36 1 158407736 158407736 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144699 exon11 c.C1563A p.I521I . . . ATP1A4 480 broad.mit.edu 36 1 158412531 158412531 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144699 exon16 c.G2337T p.K779N . . . CASQ1 844 broad.mit.edu 36 1 158431528 158431528 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001231 exon4 c.G568T p.D190Y . . . CASQ1 844 broad.mit.edu 36 1 158435126 158435126 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001231 exon8 c.C864T p.F288F . . . DCAF8 50717 broad.mit.edu 36 1 158454122 158454122 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015726 exon14 c.C1678T p.R560C . . . COPA 1314 broad.mit.edu 36 1 158559935 158559935 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004371 exon8 c.C616T p.R206C . . . SLAMF6 114836 broad.mit.edu 36 1 158723583 158723583 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184714 exon7 c.G886T p.E296X . . . SLAMF6 114836 broad.mit.edu 36 1 158726641 158726641 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184714 exon5 c.C767A p.S256Y . . . SLAMF6 114836 broad.mit.edu 36 1 158727543 158727543 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184714 exon3 c.C642T p.C214C . . . SLAMF6 114836 broad.mit.edu 36 1 158727797 158727797 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001184714 exon3 c.C388A p.L130M . . . CD84 8832 broad.mit.edu 36 1 158789813 158789813 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184881 exon4 c.C739A p.R247S . . . SLAMF1 6504 broad.mit.edu 36 1 158848909 158848909 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003037 exon6 c.C950A p.S317Y . . . SLAMF1 6504 broad.mit.edu 36 1 158873863 158873863 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003037 exon2 c.A157C p.N53H . . . F11R 50848 broad.mit.edu 36 1 159237438 159237438 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016946 exon3 c.C237A p.I79I . . . ARHGAP30 257106 broad.mit.edu 36 1 159285356 159285356 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025598 exon12 c.G2079A p.G693G . . . PLEKHM2 23207 broad.mit.edu 36 1 15932929 15932929 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015164 exon20 c.C2973T p.F991F . . . NIT1 4817 broad.mit.edu 36 1 159355233 159355233 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185092 exon2 c.C36T p.F12F . . . DEDD 9191 broad.mit.edu 36 1 159358768 159358768 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039712 exon6 c.C750A p.F250L . . . B4GALT3 8703 broad.mit.edu 36 1 159412467 159412467 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199874 exon3 c.G8A p.R3Q . . . ADAMTS4 9507 broad.mit.edu 36 1 159434576 159434576 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005099 exon1 c.C466T p.R156W . . . NDUFS2 4720 broad.mit.edu 36 1 159445908 159445908 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004550 exon6 c.G526T p.E176X . . . NDUFS2 4720 broad.mit.edu 36 1 159446743 159446743 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004550 exon9 c.G806A p.R269Q . . . NR1I3 9970 broad.mit.edu 36 1 159467541 159467541 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077482 exon7 c.C813A p.L271L . . . NR1I3 9970 broad.mit.edu 36 1 159472906 159472906 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077482 exon2 c.C74T p.A25V . . . MPZ 4359 broad.mit.edu 36 1 159543144 159543144 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000530 exon3 c.C426T p.V142V . . . FCGR2A 2212 broad.mit.edu 36 1 159746451 159746451 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001136219 exon4 c.G582A p.T194T . . . FBLIM1 54751 broad.mit.edu 36 1 15976324 15976324 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017556 exon8 c.C963T p.I321I . . . FCGR2C 9103 broad.mit.edu 36 1 159826167 159826167 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_201563 exon3 c.G325A p.G109R . . . FCRLB 127943 broad.mit.edu 36 1 159959906 159959906 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002901 exon3 c.C178T p.L60F . . . ATF6 22926 broad.mit.edu 36 1 160020472 160020472 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007348 exon4 c.C316T p.R106W . . . ATF6 22926 broad.mit.edu 36 1 160194947 160194947 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007348 exon16 c.C1892T p.S631L . . . OLFML2B 25903 broad.mit.edu 36 1 160220117 160220117 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015441 exon8 c.T2225C p.V742A . . . NOS1AP 9722 broad.mit.edu 36 1 160523810 160523810 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164757 exon3 c.C230A p.S77X . . . UHMK1 127933 broad.mit.edu 36 1 160736402 160736402 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175866 exon2 c.C302A p.S101Y . . . DDR2 4921 broad.mit.edu 36 1 160991242 160991242 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014796 exon6 c.C390T p.I130I . . . SPEN 23013 broad.mit.edu 36 1 16128553 16128553 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015001 exon11 c.C3231T p.G1077G . . . SPEN 23013 broad.mit.edu 36 1 16128648 16128648 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015001 exon11 c.C3326A p.S1109X . . . SPEN 23013 broad.mit.edu 36 1 16129337 16129337 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015001 exon11 c.C4015A p.R1339S . . . SPEN 23013 broad.mit.edu 36 1 16130511 16130511 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015001 exon11 c.A5189C p.Y1730S . . . RGS4 5999 broad.mit.edu 36 1 161305352 161305352 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001102445 exon1 c.T4C p.Y2H . . . SPEN 23013 broad.mit.edu 36 1 16130889 16130889 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015001 exon11 c.A5567C p.N1856T . . . SPEN 23013 broad.mit.edu 36 1 16131521 16131521 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015001 exon11 c.C6199A p.P2067T . . . SPEN 23013 broad.mit.edu 36 1 16131660 16131660 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015001 exon11 c.A6338G p.E2113G . . . SPEN 23013 broad.mit.edu 36 1 16137872 16137872 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015001 exon14 c.G10777A p.E3593K . . . RGS5 8490 broad.mit.edu 36 1 161404743 161404743 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003617 exon2 c.G84T p.Q28H . . . NUF2 83540 broad.mit.edu 36 1 161562564 161562564 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031423 exon2 c.G99T p.K33N . . . NUF2 83540 broad.mit.edu 36 1 161580191 161580191 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031423 exon10 c.G714T p.E238D . . . NUF2 83540 broad.mit.edu 36 1 161582125 161582125 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031423 exon11 c.G841T p.D281Y . . . NUF2 83540 broad.mit.edu 36 1 161584247 161584247 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031423 exon12 c.C1019T p.S340L . . . CDK11A 728642 broad.mit.edu 36 1 1625916 1625916 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024011 exon14 c.C1497T p.I499I . . . RXRG 6258 broad.mit.edu 36 1 163646588 163646588 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006917 exon6 c.G888T p.E296D . . . FBXO42 54455 broad.mit.edu 36 1 16449756 16449756 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018994 exon10 c.G2150T p.R717I . . . MAEL 84944 broad.mit.edu 36 1 165241212 165241212 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032858 exon8 c.C799T p.R267X . . . DUSP27 92235 broad.mit.edu 36 1 165363974 165363974 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080426 exon5 c.C2982T p.H994H . . . RCSD1 92241 broad.mit.edu 36 1 165930094 165930094 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052862 exon5 c.C405T p.S135S . . . MPZL1 9019 broad.mit.edu 36 1 166008306 166008306 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024569 exon3 c.C429T p.I143I . . . ADCY10 55811 broad.mit.edu 36 1 166054071 166054071 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167749 exon28 c.C3886A p.L1296I . . . DCAF6 55827 broad.mit.edu 36 1 166229264 166229264 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198957 exon6 c.G772T p.E258X . . . DCAF6 55827 broad.mit.edu 36 1 166301578 166301578 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198957 exon18 c.A2473G p.N825D . . . DCAF6 55827 broad.mit.edu 36 1 166304235 166304235 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198957 exon20 c.G2608A p.E870K . . . GPR161 23432 broad.mit.edu 36 1 166332469 166332469 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153832 exon5 c.G1000T p.E334X . . . NECAP2 55707 broad.mit.edu 36 1 16647044 16647044 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018090 exon3 c.G286A p.E96K . . . TBX19 9095 broad.mit.edu 36 1 166540900 166540900 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005149 exon6 c.G758A p.G253E . . . TBX19 9095 broad.mit.edu 36 1 166548804 166548804 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005149 exon8 c.C1287T p.F429F . . . NME7 29922 broad.mit.edu 36 1 167558983 167558983 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_197972 exon3 c.G166A p.E56K . . . BLZF1 8548 broad.mit.edu 36 1 167614198 167614198 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003666 exon4 c.C475T p.R159C . . . C1orf114 57821 broad.mit.edu 36 1 167655012 167655012 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021179 exon4 c.C1078T p.R360X . . . F5 2153 broad.mit.edu 36 1 167751406 167751406 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000130 exon24 c.C6428T p.S2143F . . . F5 2153 broad.mit.edu 36 1 167776291 167776291 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000130 exon13 c.T4661C p.V1554A . . . F5 2153 broad.mit.edu 36 1 167788518 167788518 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000130 exon8 c.C1197T p.Y399Y . . . F5 2153 broad.mit.edu 36 1 167791140 167791140 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000130 exon7 c.G1022A p.R341H . . . F5 2153 broad.mit.edu 36 1 167792667 167792667 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000130 exon6 c.G793T p.E265X . . . SELP 6403 broad.mit.edu 36 1 167831926 167831926 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003005 exon12 c.C1962T p.Y654Y . . . SELP 6403 broad.mit.edu 36 1 167849488 167849488 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003005 exon4 c.C549A p.C183X . . . NBPF1 55672 broad.mit.edu 36 1 16791014 16791014 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017940 exon7 c.G90A p.E30E . . . SELL 6402 broad.mit.edu 36 1 167939071 167939071 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000655 exon6 c.A940G p.T314A . . . SELL 6402 broad.mit.edu 36 1 167944288 167944288 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000655 exon3 c.G405T p.K135N . . . SELE 6401 broad.mit.edu 36 1 167962494 167962494 + Missense_Mutation SNP G T T rs5355 by-cluster,by-frequency,by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000450 exon11 c.C1723A p.L575I . . . C1orf156 92342 broad.mit.edu 36 1 168028590 168028590 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033418 exon2 c.C871A p.L291I . . . C1orf112 55732 broad.mit.edu 36 1 168038400 168038400 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018186 exon4 c.C81T p.F27F . . . C1orf112 55732 broad.mit.edu 36 1 168039967 168039967 + Nonsense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018186 exon6 c.T440G p.L147X . . . SCYL3 57147 broad.mit.edu 36 1 168091634 168091634 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181093 exon12 c.C1401A p.F467L . . . SCYL3 57147 broad.mit.edu 36 1 168114569 168114569 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181093 exon3 c.C181T p.R61C . . . C1orf129 80133 broad.mit.edu 36 1 169222412 169222412 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025063 exon10 c.C816T p.I272I . . . FMO3 2328 broad.mit.edu 36 1 169343535 169343535 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002294 exon4 c.C417A p.V139V . . . FMO3 2328 broad.mit.edu 36 1 169353137 169353137 + Missense_Mutation SNP C A A rs28363595 by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002294 exon9 c.C1530A p.F510L . . . FMO2 2327 broad.mit.edu 36 1 169441213 169441213 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001460 exon7 c.C999A p.F333L . . . FMO1 2326 broad.mit.edu 36 1 169503335 169503335 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002021 exon3 c.C162A p.L54L . . . FMO4 2329 broad.mit.edu 36 1 169555600 169555600 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002022 exon3 c.A12C p.K4N . . . FMO4 2329 broad.mit.edu 36 1 169560034 169560034 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002022 exon5 c.A455G p.N152S . . . FMO4 2329 broad.mit.edu 36 1 169577325 169577325 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002022 exon10 c.C1400A p.T467N . . . BAT2L2 23215 broad.mit.edu 36 1 169777169 169777169 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015172 exon16 c.C3934T p.R1312X . . . MYOC 4653 broad.mit.edu 36 1 169888150 169888150 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000261 exon1 c.G225A p.Q75Q . . . VAMP4 8674 broad.mit.edu 36 1 169945457 169945457 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185127 exon6 c.C313T p.R105X . . . METTL13 51603 broad.mit.edu 36 1 170020235 170020235 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014955 exon2 c.C628T p.R210W . . . DNM3 26052 broad.mit.edu 36 1 170277802 170277802 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015569 exon8 c.G1023T p.E341D . . . DNM3 26052 broad.mit.edu 36 1 170317651 170317651 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015569 exon12 c.C1479A p.F493L . . . DNM3 26052 broad.mit.edu 36 1 170328620 170328620 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015569 exon13 c.A1527C p.K509N . . . C1orf9 51430 broad.mit.edu 36 1 170824700 170824700 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014283 exon18 c.G1836A p.E612E . . . C1orf9 51430 broad.mit.edu 36 1 170825259 170825259 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014283 exon18 c.G2395T p.V799F . . . C1orf9 51430 broad.mit.edu 36 1 170825520 170825520 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014283 exon18 c.G2656T p.D886Y . . . C1orf9 51430 broad.mit.edu 36 1 170826823 170826823 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014283 exon19 c.G2902T p.A968S . . . C1orf9 51430 broad.mit.edu 36 1 170838478 170838478 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014283 exon22 c.G3193T p.D1065Y . . . SLC9A11 284525 broad.mit.edu 36 1 171769492 171769492 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178527 exon17 c.T2042C p.I681T . . . SLC9A11 284525 broad.mit.edu 36 1 171771633 171771633 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178527 exon15 c.C1734A p.F578L . . . KLHL20 27252 broad.mit.edu 36 1 171951825 171951825 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014458 exon2 c.G20A p.R7H . . . CENPL 91687 broad.mit.edu 36 1 172043170 172043170 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127181 exon4 c.G278T p.R93I . . . DARS2 55157 broad.mit.edu 36 1 172064124 172064124 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018122 exon3 c.C258T p.F86F . . . DARS2 55157 broad.mit.edu 36 1 172089261 172089261 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018122 exon14 c.C1496T p.S499L . . . RABGAP1L 9910 broad.mit.edu 36 1 172540821 172540821 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014857 exon11 c.G1398T p.K466N . . . PADI2 11240 broad.mit.edu 36 1 17285771 17285771 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007365 exon7 c.C666T p.F222F . . . CACYBP 27101 broad.mit.edu 36 1 173245773 173245773 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007214 exon6 c.C493T p.R165X . . . TNN 63923 broad.mit.edu 36 1 173313474 173313474 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022093 exon2 c.C297T p.C99C . . . TNN 63923 broad.mit.edu 36 1 173319552 173319552 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022093 exon5 c.G1092T p.E364D . . . TNN 63923 broad.mit.edu 36 1 173321166 173321166 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022093 exon6 c.C1237T p.L413L . . . TNR 7143 broad.mit.edu 36 1 173565888 173565888 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003285 exon21 c.C3738T p.V1246V . . . TNR 7143 broad.mit.edu 36 1 173595478 173595478 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003285 exon15 c.C2867A p.P956H . . . TNR 7143 broad.mit.edu 36 1 173598489 173598489 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003285 exon14 c.C2787T p.Y929Y . . . TNR 7143 broad.mit.edu 36 1 173621975 173621975 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003285 exon8 c.C1593T p.V531V . . . TNR 7143 broad.mit.edu 36 1 173642051 173642051 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003285 exon3 c.C423T p.I141I . . . PADI1 29943 broad.mit.edu 36 1 17439736 17439736 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013358 exon15 c.G1652A p.R551H . . . RFWD2 64326 broad.mit.edu 36 1 174399605 174399605 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022457 exon4 c.G611T p.R204M . . . PAPPA2 60676 broad.mit.edu 36 1 174926223 174926223 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021936 exon5 c.G2465A p.R822K . . . PAPPA2 60676 broad.mit.edu 36 1 174975949 174975949 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020318 exon14 c.G4145T p.G1382V . . . FAM5B 57795 broad.mit.edu 36 1 175509269 175509269 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021165 exon5 c.C692A p.P231H . . . FAM5B 57795 broad.mit.edu 36 1 175514513 175514513 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021165 exon7 c.C1204T p.R402C . . . FAM5B 57795 broad.mit.edu 36 1 175516732 175516732 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021165 exon8 c.G1797A p.E599E . . . FAM5B 57795 broad.mit.edu 36 1 175516881 175516881 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021165 exon8 c.G1946A p.R649Q . . . FAM5B 57795 broad.mit.edu 36 1 175517158 175517158 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021165 exon8 c.C2223A p.F741L . . . SEC16B 89866 broad.mit.edu 36 1 176194703 176194703 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033127 exon9 c.G1029A p.T343T . . . RCC2 55920 broad.mit.edu 36 1 17628212 17628212 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136204 exon2 c.G356A p.R119Q . . . RALGPS2 55103 broad.mit.edu 36 1 177069283 177069283 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152663 exon8 c.G582T p.K194N . . . ANGPTL1 9068 broad.mit.edu 36 1 177101312 177101312 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004673 exon3 c.A223G p.T75A . . . TOR3A 64222 broad.mit.edu 36 1 177330875 177330875 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022371 exon6 c.G1093T p.E365X . . . ABL2 27 broad.mit.edu 36 1 177354445 177354445 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168239 exon6 c.G1015T p.E339X . . . C1orf125 126859 broad.mit.edu 36 1 177727431 177727431 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144696 exon19 c.C2227T p.R743X . . . C1orf125 126859 broad.mit.edu 36 1 177769627 177769627 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144696 exon24 c.G2790T p.E930D . . . NPHS2 7827 broad.mit.edu 36 1 177792936 177792936 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014625 exon5 c.G587A p.R196Q . . . TDRD5 163589 broad.mit.edu 36 1 177887822 177887822 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199085 exon13 c.C2027T p.A676V . . . FAM163A 148753 broad.mit.edu 36 1 178049877 178049877 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_173509 exon5 c.A434G p.Y145C . . . ARHGEF10L 55160 broad.mit.edu 36 1 17820985 17820985 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018125 exon11 c.G982A p.E328K . . . CEP350 9857 broad.mit.edu 36 1 178232875 178232875 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014810 exon6 c.C960T p.N320N . . . CEP350 9857 broad.mit.edu 36 1 178328587 178328587 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014810 exon34 c.C6724T p.L2242F . . . CEP350 9857 broad.mit.edu 36 1 178346855 178346855 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014810 exon38 c.T9290C p.I3097T . . . LHX4 89884 broad.mit.edu 36 1 178510113 178510113 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033343 exon6 c.A949G p.I317V . . . XPR1 9213 broad.mit.edu 36 1 179047223 179047223 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135669 exon7 c.C739A p.L247M . . . XPR1 9213 broad.mit.edu 36 1 179060671 179060671 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135669 exon8 c.G923T p.R308I . . . XPR1 9213 broad.mit.edu 36 1 179099576 179099576 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135669 exon11 c.C1416T p.F472F . . . XPR1 9213 broad.mit.edu 36 1 179116001 179116001 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135669 exon13 c.C1780T p.R594W . . . MR1 3140 broad.mit.edu 36 1 179288112 179288112 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001531 exon5 c.A723C p.E241D . . . CACNA1E 777 broad.mit.edu 36 1 179719629 179719629 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000721 exon1 c.G126A p.T42T . . . CACNA1E 777 broad.mit.edu 36 1 179719719 179719719 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000721 exon1 c.C216T p.F72F . . . CACNA1E 777 broad.mit.edu 36 1 179991053 179991053 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000721 exon28 c.T3886C p.Y1296H . . . CACNA1E 777 broad.mit.edu 36 1 180026228 180026228 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000721 exon44 c.G5811T p.S1937S . . . NPL 80896 broad.mit.edu 36 1 181041950 181041950 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030769 exon4 c.C190T p.R64C . . . DHX9 1660 broad.mit.edu 36 1 181108202 181108202 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001357 exon15 c.C1665A p.F555L . . . C1orf14 81626 broad.mit.edu 36 1 181175064 181175064 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030933 exon5 c.G946A p.E316K . . . C1orf14 81626 broad.mit.edu 36 1 181176239 181176239 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030933 exon3 c.G618A p.E206E . . . LAMC1 3915 broad.mit.edu 36 1 181352642 181352642 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002293 exon8 c.C1545A p.I515I . . . LAMC1 3915 broad.mit.edu 36 1 181353902 181353902 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002293 exon11 c.G1988T p.R663I . . . LAMC1 3915 broad.mit.edu 36 1 181364463 181364463 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002293 exon18 c.G3235A p.E1079K . . . LAMC1 3915 broad.mit.edu 36 1 181368277 181368277 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002293 exon21 c.T3686G p.I1229S . . . LAMC1 3915 broad.mit.edu 36 1 181373526 181373526 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002293 exon26 c.G4414T p.E1472X . . . LAMC2 3918 broad.mit.edu 36 1 181454182 181454182 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018891 exon4 c.G439A p.A147T . . . LAMC2 3918 broad.mit.edu 36 1 181462494 181462494 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018891 exon9 c.C1105T p.R369C . . . LAMC2 3918 broad.mit.edu 36 1 181476090 181476090 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018891 exon22 c.A3269G p.N1090S . . . NMNAT2 23057 broad.mit.edu 36 1 181529515 181529515 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015039 exon2 c.T122G p.F41C . . . SMG7 9887 broad.mit.edu 36 1 181786539 181786539 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174061 exon20 c.A3038G p.H1013R . . . APOBEC4 403314 broad.mit.edu 36 1 181884092 181884092 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_203454 exon2 c.C448A p.L150I . . . RGL1 23179 broad.mit.edu 36 1 182120532 182120532 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015149 exon8 c.G893A p.R298Q . . . RGL1 23179 broad.mit.edu 36 1 182135991 182135991 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015149 exon12 c.G1420A p.E474K . . . RGL1 23179 broad.mit.edu 36 1 182161970 182161970 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015149 exon19 c.G2333A p.R778H . . . TSEN15 116461 broad.mit.edu 36 1 182308591 182308591 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052965 exon5 c.C503A p.S168Y . . . EDEM3 80267 broad.mit.edu 36 1 182942485 182942485 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025191 exon18 c.C2118T p.I706I . . . RNF2 6045 broad.mit.edu 36 1 183323385 183323385 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007212 exon2 c.G77A p.R26Q . . . RNF2 6045 broad.mit.edu 36 1 183335625 183335625 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007212 exon6 c.C817T p.R273X . . . C1orf25 81627 broad.mit.edu 36 1 183360815 183360815 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030934 exon12 c.C1643A p.S548Y . . . C1orf26 54823 broad.mit.edu 36 1 183410500 183410500 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001105518 exon5 c.A598G p.K200E . . . C1orf26 54823 broad.mit.edu 36 1 183442459 183442459 + Nonsense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105518 exon13 c.T1913G p.L638X . . . C1orf26 54823 broad.mit.edu 36 1 183457707 183457707 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001105518 exon15 c.C2225T p.S742L . . . C1orf26 54823 broad.mit.edu 36 1 183512394 183512394 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105518 exon18 c.T2544G p.I848M . . . IVNS1ABP 10625 broad.mit.edu 36 1 183533805 183533805 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006469 exon15 c.G1914T p.K638N . . . IVNS1ABP 10625 broad.mit.edu 36 1 183536286 183536286 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006469 exon11 c.G1148A p.R383Q . . . IVNS1ABP 10625 broad.mit.edu 36 1 183544565 183544565 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006469 exon5 c.G347A p.R116Q . . . HMCN1 83872 broad.mit.edu 36 1 184213713 184213713 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031935 exon16 c.G2543T p.R848I . . . HMCN1 83872 broad.mit.edu 36 1 184289649 184289649 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031935 exon44 c.C6770A p.S2257X . . . HMCN1 83872 broad.mit.edu 36 1 184354949 184354949 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031935 exon78 c.C11852T p.A3951V . . . HMCN1 83872 broad.mit.edu 36 1 184363951 184363951 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031935 exon83 c.C12809A p.S4270X . . . HMCN1 83872 broad.mit.edu 36 1 184373320 184373320 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031935 exon88 c.A13650C p.Q4550H . . . HMCN1 83872 broad.mit.edu 36 1 184400871 184400871 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031935 exon98 c.C15262T p.R5088C . . . PRG4 10216 broad.mit.edu 36 1 184537381 184537381 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127709 exon4 c.C234T p.F78F . . . PRG4 10216 broad.mit.edu 36 1 184547308 184547308 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127709 exon8 c.T3471G p.A1157A . . . TPR 7175 broad.mit.edu 36 1 184558085 184558085 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003292 exon45 c.C6449A p.A2150D . . . TPR 7175 broad.mit.edu 36 1 184579209 184579209 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003292 exon27 c.G3622T p.E1208X . . . TPR 7175 broad.mit.edu 36 1 184580310 184580310 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003292 exon25 c.G3237T p.Q1079H . . . TPR 7175 broad.mit.edu 36 1 184591232 184591232 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003292 exon17 c.G2104T p.E702X . . . TPR 7175 broad.mit.edu 36 1 184594359 184594359 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003292 exon13 c.C1436A p.S479X . . . PTGS2 5743 broad.mit.edu 36 1 184911875 184911875 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000963 exon8 c.G1035A p.L345L . . . PTGS2 5743 broad.mit.edu 36 1 184913521 184913521 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000963 exon5 c.C522A p.I174I . . . PLA2G4A 5321 broad.mit.edu 36 1 185186474 185186474 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024420 exon13 c.G1327A p.E443K . . . IGSF21 84966 broad.mit.edu 36 1 18561263 18561263 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032880 exon5 c.G492A p.Q164Q . . . FAM5C 339479 broad.mit.edu 36 1 188470138 188470138 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199051 exon5 c.G711T p.K237N . . . FAM5C 339479 broad.mit.edu 36 1 188517419 188517419 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199051 exon3 c.C321A p.F107L . . . PAX7 5081 broad.mit.edu 36 1 18935021 18935021 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013945 exon8 c.C1458A p.S486S . . . TAS1R2 80834 broad.mit.edu 36 1 19039241 19039241 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152232 exon6 c.C1959A p.F653L . . . ALDH4A1 8659 broad.mit.edu 36 1 19075515 19075515 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170726 exon12 c.G1219A p.A407T . . . RGS13 6003 broad.mit.edu 36 1 190895104 190895104 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144766 exon6 c.G308T p.S103I . . . KIAA1751 85452 broad.mit.edu 36 1 1909875 1909875 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080484 exon4 c.C232T p.R78W . . . RGS2 5997 broad.mit.edu 36 1 191046830 191046830 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002923 exon4 c.C371A p.S124X . . . TROVE2 6738 broad.mit.edu 36 1 191304863 191304863 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001173524 exon2 c.C56A p.S19Y . . . TROVE2 6738 broad.mit.edu 36 1 191312720 191312720 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001173524 exon5 c.C1003A p.H335N . . . GLRX2 51022 broad.mit.edu 36 1 191332389 191332389 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016066 exon4 c.G487T p.E163X . . . UBR4 23352 broad.mit.edu 36 1 19280608 19280608 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020765 exon103 c.G15055A p.E5019K . . . UBR4 23352 broad.mit.edu 36 1 19299541 19299541 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020765 exon89 c.C13137T p.I4379I . . . UBR4 23352 broad.mit.edu 36 1 19340598 19340598 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020765 exon57 c.C8318A p.S2773X . . . UBR4 23352 broad.mit.edu 36 1 19347693 19347693 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020765 exon50 c.C7445A p.S2482Y . . . UBR4 23352 broad.mit.edu 36 1 19351551 19351551 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020765 exon47 c.G6839A p.R2280H . . . UBR4 23352 broad.mit.edu 36 1 19352997 19352997 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020765 exon45 c.C6482A p.S2161Y . . . UBR4 23352 broad.mit.edu 36 1 19360927 19360927 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020765 exon36 c.G5008T p.E1670X . . . UBR4 23352 broad.mit.edu 36 1 19397997 19397997 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020765 exon4 c.C391A p.L131I . . . KIAA0090 23065 broad.mit.edu 36 1 19422537 19422537 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015047 exon19 c.C2316A p.S772S . . . KIAA0090 23065 broad.mit.edu 36 1 19430425 19430425 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015047 exon16 c.C1861T p.R621C . . . KCNT2 343450 broad.mit.edu 36 1 194576168 194576168 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198503 exon16 c.G1709T p.R570I . . . CFH 3075 broad.mit.edu 36 1 194915430 194915430 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000186 exon6 c.T674G p.I225S . . . CFH 3075 broad.mit.edu 36 1 194925867 194925867 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000186 exon9 c.G1211T p.R404I . . . CFH 3075 broad.mit.edu 36 1 194962326 194962326 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000186 exon13 c.C1977T p.C659C . . . CFH 3075 broad.mit.edu 36 1 194976402 194976402 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000186 exon18 c.C2813A p.S938Y . . . CFH 3075 broad.mit.edu 36 1 194981583 194981583 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000186 exon21 c.A3324T p.K1108N . . . CFH 3075 broad.mit.edu 36 1 194982895 194982895 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000186 exon22 c.A3525C p.E1175D . . . CFH 3075 broad.mit.edu 36 1 194982962 194982962 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000186 exon22 c.G3592T p.E1198X . . . CFHR4 10877 broad.mit.edu 36 1 195123933 195123933 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006684 exon1 c.C30T p.T10T . . . CFHR2 3080 broad.mit.edu 36 1 195193698 195193698 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005666 exon4 c.C485T p.S162L . . . F13B 2165 broad.mit.edu 36 1 195296188 195296188 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001994 exon5 c.T736G p.Y246D . . . ASPM 259266 broad.mit.edu 36 1 195336776 195336776 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018136 exon18 c.G8228A p.R2743Q . . . ASPM 259266 broad.mit.edu 36 1 195360636 195360636 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018136 exon12 c.C3155T p.A1052V . . . ASPM 259266 broad.mit.edu 36 1 195378337 195378337 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018136 exon3 c.G1668T p.K556N . . . ZBTB41 360023 broad.mit.edu 36 1 195416748 195416748 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194314 exon5 c.C1669T p.R557X . . . ZBTB41 360023 broad.mit.edu 36 1 195436212 195436212 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194314 exon1 c.A15G p.R5R . . . CRB1 23418 broad.mit.edu 36 1 195671000 195671000 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201253 exon9 c.C3384A p.I1128I . . . DENND1B 163486 broad.mit.edu 36 1 195747482 195747482 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001195215 exon22 c.C1814T p.T605M . . . LHX9 56956 broad.mit.edu 36 1 196153658 196153658 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020204 exon1 c.G82T p.G28C . . . LHX9 56956 broad.mit.edu 36 1 196157306 196157306 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020204 exon3 c.C627T p.G209G . . . NEK7 140609 broad.mit.edu 36 1 196514720 196514720 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133494 exon7 c.T495C p.A165A . . . PTPRC 5788 broad.mit.edu 36 1 196935357 196935357 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002838 exon5 c.G334T p.D112Y . . . PTPRC 5788 broad.mit.edu 36 1 196977627 196977627 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080921 exon21 c.G1921T p.E641X . . . PTPRC 5788 broad.mit.edu 36 1 196988468 196988468 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080921 exon28 c.G2964T p.K988N . . . PTPRC 5788 broad.mit.edu 36 1 196991733 196991733 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080921 exon30 c.C3232A p.H1078N . . . ZNF281 23528 broad.mit.edu 36 1 198643840 198643840 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012482 exon2 c.G1617T p.K539N . . . ZNF281 23528 broad.mit.edu 36 1 198644627 198644627 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012482 exon2 c.G830A p.R277Q . . . KIF14 9928 broad.mit.edu 36 1 198791196 198791196 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014875 exon28 c.G4363T p.E1455X . . . KIF14 9928 broad.mit.edu 36 1 198801324 198801324 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014875 exon24 c.T3758G p.F1253C . . . KIF14 9928 broad.mit.edu 36 1 198839660 198839660 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014875 exon9 c.G1793A p.R598Q . . . KIF14 9928 broad.mit.edu 36 1 198841111 198841111 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014875 exon8 c.G1669A p.A557T . . . KIF14 9928 broad.mit.edu 36 1 198844632 198844632 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014875 exon5 c.A1503C p.K501N . . . DDX59 83479 broad.mit.edu 36 1 198902093 198902093 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001031725 exon2 c.G399A p.A133A . . . CAMSAP1L1 23271 broad.mit.edu 36 1 199043147 199043147 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203459 exon3 c.C420T p.I140I . . . CACNA1S 779 broad.mit.edu 36 1 199276455 199276455 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000069 exon42 c.G5144T p.S1715I . . . CACNA1S 779 broad.mit.edu 36 1 199319051 199319051 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000069 exon10 c.C1255T p.R419C . . . CACNA1S 779 broad.mit.edu 36 1 199329737 199329737 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000069 exon3 c.G294A p.S98S . . . PKP1 5317 broad.mit.edu 36 1 199564522 199564522 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000299 exon14 c.G2179A p.D727N . . . LAD1 3898 broad.mit.edu 36 1 199622441 199622441 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005558 exon3 c.G671T p.R224I . . . LMOD1 25802 broad.mit.edu 36 1 200135111 200135111 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012134 exon2 c.G1653T p.K551N . . . RNPEP 6051 broad.mit.edu 36 1 200233075 200233075 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020216 exon5 c.A860G p.D287G . . . PTPN7 5778 broad.mit.edu 36 1 200393872 200393872 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199797 exon3 c.C525A p.F175L . . . PPP1R12B 4660 broad.mit.edu 36 1 200676463 200676463 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002481 exon11 c.G1465T p.E489X . . . PPP1R12B 4660 broad.mit.edu 36 1 200731372 200731372 + Missense_Mutation SNP G A A rs3817221 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002481 exon17 c.G2387A p.R796Q . . . SYT2 127833 broad.mit.edu 36 1 200837736 200837736 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177402 exon6 c.G706T p.D236Y . . . SYT2 127833 broad.mit.edu 36 1 200838198 200838198 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177402 exon5 c.G564T p.K188N . . . OTUD3 23252 broad.mit.edu 36 1 20104062 20104062 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015207 exon6 c.G830T p.R277I . . . RABIF 5877 broad.mit.edu 36 1 201116762 201116762 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002871 exon2 c.C339A p.F113L . . . ADIPOR1 51094 broad.mit.edu 36 1 201177968 201177968 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127687 exon8 c.C807T p.G269G . . . CYB5R1 51706 broad.mit.edu 36 1 201198856 201198856 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016243 exon8 c.C706T p.R236C . . . PPFIA4 8497 broad.mit.edu 36 1 201304329 201304329 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015053 exon14 c.G1756A p.D586N . . . MYOG 4656 broad.mit.edu 36 1 201321622 201321622 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002479 exon1 c.G91A p.E31K . . . ADORA1 134 broad.mit.edu 36 1 201364665 201364665 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001048230 exon2 c.C73T p.P25S . . . CHI3L1 1116 broad.mit.edu 36 1 201418490 201418490 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001276 exon6 c.G579T p.K193N . . . CHIT1 1118 broad.mit.edu 36 1 201458906 201458906 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003465 exon6 c.C585T p.Y195Y . . . FMOD 2331 broad.mit.edu 36 1 201583254 201583254 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002023 exon2 c.C768A p.V256V . . . PRELP 5549 broad.mit.edu 36 1 201719335 201719335 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002725 exon2 c.G400T p.D134Y . . . OPTC 26254 broad.mit.edu 36 1 201734482 201734482 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014359 exon4 c.G421A p.D141N . . . ATP2B4 493 broad.mit.edu 36 1 201937821 201937821 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001396 exon7 c.C928T p.R310C . . . ATP2B4 493 broad.mit.edu 36 1 201939461 201939461 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001396 exon8 c.C996T p.I332I . . . ATP2B4 493 broad.mit.edu 36 1 201942831 201942831 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001396 exon9 c.C1171T p.R391C . . . ATP2B4 493 broad.mit.edu 36 1 201969124 201969124 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001396 exon21 c.C3460T p.P1154S . . . LAX1 54900 broad.mit.edu 36 1 202010146 202010146 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017773 exon5 c.G911A p.G304E . . . ZC3H11A 9877 broad.mit.edu 36 1 202073811 202073811 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014827 exon13 c.G969T p.K323N . . . SOX13 9580 broad.mit.edu 36 1 202361828 202361828 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005686 exon14 c.C1812T p.D604D . . . ETNK2 55224 broad.mit.edu 36 1 202375793 202375793 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018208 exon5 c.G861A p.E287E . . . REN 5972 broad.mit.edu 36 1 202390828 202390828 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000537 exon10 c.G1160A p.R387Q . . . REN 5972 broad.mit.edu 36 1 202391944 202391944 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000537 exon8 c.G945T p.K315N . . . REN 5972 broad.mit.edu 36 1 202397914 202397914 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000537 exon2 c.G99A p.R33R . . . PPP1R15B 84919 broad.mit.edu 36 1 202646508 202646508 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032833 exon1 c.G655A p.V219I . . . PIK3C2B 5287 broad.mit.edu 36 1 202660636 202660636 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002646 exon34 c.C4872T p.F1624F . . . PIK3C2B 5287 broad.mit.edu 36 1 202668036 202668036 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002646 exon28 c.G4070A p.R1357Q . . . PIK3C2B 5287 broad.mit.edu 36 1 202700350 202700350 + Missense_Mutation SNP C T T rs2271416 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002646 exon5 c.G1040A p.R347Q . . . MDM4 4194 broad.mit.edu 36 1 202785060 202785060 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002393 exon11 c.C1100T p.S367L MDM4,upper_aerodigestive_tract,head_neck,Substitution - Missense,0 . . NFASC 23114 broad.mit.edu 36 1 203180142 203180142 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160331 exon1 c.G76A p.E26K . . . NFASC 23114 broad.mit.edu 36 1 203190033 203190033 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160331 exon3 c.C292T p.R98C . . . CNTN2 6900 broad.mit.edu 36 1 203294899 203294899 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005076 exon6 c.C552T p.F184F . . . CNTN2 6900 broad.mit.edu 36 1 203297726 203297726 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005076 exon9 c.C1084T p.R362W . . . DSTYK 25778 broad.mit.edu 36 1 203395875 203395875 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015375 exon8 c.C2095A p.H699N . . . ELK4 2005 broad.mit.edu 36 1 203855657 203855657 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021795 exon3 c.A1140C p.Q380H . . . NUCKS1 64710 broad.mit.edu 36 1 203965351 203965351 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022731 exon2 c.C39A p.Y13X . . . IKBKE 9641 broad.mit.edu 36 1 204714913 204714913 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193322 exon5 c.C311T p.A104V . . . IKBKE 9641 broad.mit.edu 36 1 204718198 204718198 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193322 exon9 c.C885T p.F295F . . . LGTN 1939 broad.mit.edu 36 1 204843132 204843132 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006893 exon6 c.G580A p.D194N . . . IL10 3586 broad.mit.edu 36 1 205010911 205010911 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000572 exon3 c.G342T p.E114D . . . FAIM3 9214 broad.mit.edu 36 1 205151883 205151883 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005449 exon4 c.T525G p.V175V . . . FAIM3 9214 broad.mit.edu 36 1 205153848 205153848 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005449 exon2 c.G252T p.K84N . . . PIGR 5284 broad.mit.edu 36 1 205177375 205177375 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002644 exon4 c.G733A p.V245I . . . FCAMR 83953 broad.mit.edu 36 1 205202510 205202510 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032029 exon5 c.C323A p.S108X . . . C1orf116 79098 broad.mit.edu 36 1 205263238 205263238 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023938 exon4 c.C494T p.A165V . . . PFKFB2 5208 broad.mit.edu 36 1 205294715 205294715 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018053 exon2 c.C30T p.N10N . . . C4BPA 722 broad.mit.edu 36 1 205363933 205363933 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000715 exon5 c.G472T p.D158Y . . . CR2 1380 broad.mit.edu 36 1 205706701 205706701 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001006658 exon2 c.C266A p.S89Y . . . CR1 1378 broad.mit.edu 36 1 205807856 205807856 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000651 exon25 c.C4017A p.V1339V . . . CR1 1378 broad.mit.edu 36 1 205807920 205807920 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000651 exon25 c.G4081A p.D1361N . . . CR1 1378 broad.mit.edu 36 1 205820290 205820290 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000651 exon30 c.C5019A p.F1673L . . . CR1 1378 broad.mit.edu 36 1 205858067 205858067 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000651 exon42 c.C6918T p.N2306N . . . CD46 4179 broad.mit.edu 36 1 206007039 206007039 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153826 exon6 c.A732C p.K244N . . . CD46 4179 broad.mit.edu 36 1 206025618 206025618 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153826 exon11 c.G1050A p.P350P . . . PLXNA2 5362 broad.mit.edu 36 1 206300769 206300769 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025179 exon13 c.C2623T p.R875X . . . MUL1 79594 broad.mit.edu 36 1 20700358 20700358 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024544 exon4 c.G471T p.E157D . . . LOC642587 642587 broad.mit.edu 36 1 207669336 207669336 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001104548 exon2 c.C71A p.S24Y . . . CAMK1G 57172 broad.mit.edu 36 1 207845522 207845522 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020439 exon5 c.C315A p.L105L . . . CAMK1G 57172 broad.mit.edu 36 1 207849017 207849017 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020439 exon8 c.C705A p.Y235X . . . G0S2 50486 broad.mit.edu 36 1 207915760 207915760 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015714 exon2 c.C108T p.F36F . . . TRAF3IP3 80342 broad.mit.edu 36 1 208012931 208012931 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025228 exon9 c.G718T p.D240Y . . . C1orf74 148304 broad.mit.edu 36 1 208022944 208022944 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152485 exon2 c.C659A p.S220Y . . . C1orf107 27042 broad.mit.edu 36 1 208068110 208068110 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014388 exon1 c.T79G p.F27V . . . C1orf107 27042 broad.mit.edu 36 1 208073227 208073227 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014388 exon4 c.G463A p.E155K . . . SYT14 255928 broad.mit.edu 36 1 208261180 208261180 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153262 exon4 c.G400A p.A134T . . . SYT14 255928 broad.mit.edu 36 1 208340006 208340006 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153262 exon6 c.G741A p.S247S . . . KIF17 57576 broad.mit.edu 36 1 20881888 20881888 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122819 exon11 c.C2308T p.R770C . . . HHAT 55733 broad.mit.edu 36 1 208863523 208863523 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018194 exon11 c.C1276T p.R426X . . . KCNH1 3756 broad.mit.edu 36 1 208923509 208923509 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002238 exon11 c.C2626T p.R876W . . . KCNH1 3756 broad.mit.edu 36 1 208923828 208923828 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002238 exon11 c.G2307A p.T769T . . . KCNH1 3756 broad.mit.edu 36 1 208923983 208923983 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002238 exon11 c.C2152T p.R718X . . . KCNH1 3756 broad.mit.edu 36 1 209159950 209159950 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002238 exon7 c.G1036T p.E346X . . . KCNH1 3756 broad.mit.edu 36 1 209347292 209347292 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_002238 exon2 c.T130C p.Y44H . . . TRAF5 7188 broad.mit.edu 36 1 209609511 209609511 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_004619 exon9 c.T884C p.F295S . . . TRAF5 7188 broad.mit.edu 36 1 209612410 209612410 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004619 exon11 c.C1417A p.L473M . . . HP1BP3 50809 broad.mit.edu 36 1 20979516 20979516 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016287 exon2 c.C5T p.A2V . . . NEK2 4751 broad.mit.edu 36 1 209913476 209913476 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_002497 exon3 c.T527G p.F176C . . . LPGAT1 9926 broad.mit.edu 36 1 210018969 210018969 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014873 exon6 c.G768A p.T256T . . . INTS7 25896 broad.mit.edu 36 1 210215158 210215158 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199809 exon12 c.C1641A p.F547L . . . PPP2R5A 5525 broad.mit.edu 36 1 210597154 210597154 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199756 exon11 c.C960T p.N320N . . . TMEM206 55248 broad.mit.edu 36 1 210615235 210615235 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198862 exon8 c.C997A p.P333T . . . EIF4G3 8672 broad.mit.edu 36 1 21064235 21064235 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003760 exon16 c.C2562A p.V854V . . . NENF 29937 broad.mit.edu 36 1 210685889 210685889 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013349 exon4 c.G437T p.R146I . . . EIF4G3 8672 broad.mit.edu 36 1 21085406 21085406 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003760 exon14 c.G2131T p.E711X . . . FAM71A 149647 broad.mit.edu 36 1 210865231 210865231 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153606 exon1 c.C389A p.S130Y . . . FAM71A 149647 broad.mit.edu 36 1 210865578 210865578 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_153606 exon1 c.A736C p.N246H . . . FLVCR1 28982 broad.mit.edu 36 1 211099144 211099144 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014053 exon1 c.C727A p.L243M . . . EIF4G3 8672 broad.mit.edu 36 1 21141245 21141245 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003760 exon9 c.T821C p.V274A . . . RPS6KC1 26750 broad.mit.edu 36 1 211481064 211481064 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012424 exon11 c.G1622A p.G541D . . . RPS6KC1 26750 broad.mit.edu 36 1 211481242 211481242 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012424 exon11 c.C1800A p.F600L . . . RPS6KC1 26750 broad.mit.edu 36 1 211482099 211482099 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_012424 exon11 c.T2657G p.F886C . . . PTPN14 5784 broad.mit.edu 36 1 212691866 212691866 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005401 exon3 c.G249T p.K83N . . . CENPF 1063 broad.mit.edu 36 1 212881025 212881025 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016343 exon12 c.G2721T p.E907D . . . CENPF 1063 broad.mit.edu 36 1 212882210 212882210 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016343 exon12 c.G3906T p.E1302D . . . CENPF 1063 broad.mit.edu 36 1 212882942 212882942 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016343 exon12 c.G4638A p.A1546A . . . CENPF 1063 broad.mit.edu 36 1 212896955 212896955 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016343 exon18 c.G8542T p.E2848X . . . CENPF 1063 broad.mit.edu 36 1 212898984 212898984 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016343 exon19 c.G9131T p.R3044I . . . KCNK2 3776 broad.mit.edu 36 1 213409191 213409191 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017424 exon4 c.G490T p.E164X . . . KCTD3 51133 broad.mit.edu 36 1 213817990 213817990 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016121 exon6 c.G340T p.E114X . . . USH2A 7399 broad.mit.edu 36 1 213879171 213879171 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon69 c.G15001A p.E5001K . . . USH2A 7399 broad.mit.edu 36 1 213915156 213915156 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon63 c.C12720A p.I4240I . . . USH2A 7399 broad.mit.edu 36 1 213915482 213915482 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon63 c.C12394T p.L4132L . . . USH2A 7399 broad.mit.edu 36 1 214019893 214019893 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon55 c.C10854T p.G3618G . . . USH2A 7399 broad.mit.edu 36 1 214053740 214053740 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon49 c.C9700A p.H3234N . . . USH2A 7399 broad.mit.edu 36 1 214318197 214318197 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon27 c.C5429A p.S1810Y . . . ECE1 1889 broad.mit.edu 36 1 21435918 21435918 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001113348 exon12 c.G1348A p.E450K . . . USH2A 7399 broad.mit.edu 36 1 214415328 214415328 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon21 c.G4516T p.E1506X . . . USH2A 7399 broad.mit.edu 36 1 214532266 214532266 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_206933 exon10 c.T1714C p.C572R . . . USH2A 7399 broad.mit.edu 36 1 214661931 214661931 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon2 c.C371A p.S124Y . . . USH2A 7399 broad.mit.edu 36 1 214662196 214662196 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206933 exon2 c.C106A p.L36I . . . ECE1 1889 broad.mit.edu 36 1 21471969 21471969 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001113348 exon4 c.C255T p.S85S . . . ESRRG 2104 broad.mit.edu 36 1 214808015 214808015 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206595 exon5 c.G569T p.R190M . . . SPATA17 128153 broad.mit.edu 36 1 216014384 216014384 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138796 exon7 c.G605A p.R202Q . . . TGFB2 7042 broad.mit.edu 36 1 216645178 216645178 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003238 exon2 c.C391T p.R131X . . . TGFB2 7042 broad.mit.edu 36 1 216674050 216674050 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003238 exon3 c.C514A p.L172I . . . TGFB2 7042 broad.mit.edu 36 1 216681298 216681298 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003238 exon7 c.A1216G p.M406V . . . RAP1GAP 5909 broad.mit.edu 36 1 21807308 21807308 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002885 exon17 c.C1281A p.F427L . . . RAP1GAP 5909 broad.mit.edu 36 1 21807997 21807997 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002885 exon16 c.T1091G p.F364C . . . EPRS 2058 broad.mit.edu 36 1 218208861 218208861 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004446 exon32 c.C4449A p.F1483L . . . MARK1 4139 broad.mit.edu 36 1 218875439 218875439 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018650 exon12 c.G1221T p.L407L . . . MARK1 4139 broad.mit.edu 36 1 218893313 218893313 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018650 exon16 c.C1984T p.R662C . . . HLX 3142 broad.mit.edu 36 1 219121302 219121302 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021958 exon2 c.A736C p.N246H . . . HLX 3142 broad.mit.edu 36 1 219122148 219122148 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021958 exon3 c.G792A p.T264T . . . LDLRAD2 401944 broad.mit.edu 36 1 22011589 22011589 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013693 exon1 c.G58A p.A20T . . . MIA3 375056 broad.mit.edu 36 1 220868253 220868253 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198551 exon4 c.G1068T p.Q356H . . . MIA3 375056 broad.mit.edu 36 1 220890659 220890659 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198551 exon10 c.G3781T p.E1261X . . . MIA3 375056 broad.mit.edu 36 1 220894718 220894718 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198551 exon18 c.C4567A p.L1523M . . . DISP1 84976 broad.mit.edu 36 1 221243649 221243649 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032890 exon8 c.C2287T p.R763C . . . DISP1 84976 broad.mit.edu 36 1 221245749 221245749 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032890 exon8 c.C4387A p.L1463I . . . TLR5 7100 broad.mit.edu 36 1 221351685 221351685 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003268 exon6 c.C1312A p.L438I . . . SUSD4 55061 broad.mit.edu 36 1 221508617 221508617 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037175 exon4 c.G385A p.D129N . . . C1orf65 164127 broad.mit.edu 36 1 221635280 221635280 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152610 exon1 c.C1840T p.L614F . . . CAPN2 824 broad.mit.edu 36 1 222001373 222001373 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001748 exon5 c.C612T p.F204F . . . TP53BP2 7159 broad.mit.edu 36 1 222035197 222035197 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031685 exon18 c.G3386T p.R1129I . . . CELA3A 10136 broad.mit.edu 36 1 22206010 22206010 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005747 exon5 c.G415A p.V139I . . . NVL 4931 broad.mit.edu 36 1 222562381 222562381 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002533 exon6 c.G550T p.D184Y . . . CDC42 998 broad.mit.edu 36 1 22290578 22290578 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001791 exon6 c.G557A p.R186H . . . CNIH3 149111 broad.mit.edu 36 1 222935310 222935310 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152495 exon2 c.G109T p.D37Y . . . CNIH3 149111 broad.mit.edu 36 1 222939142 222939142 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152495 exon3 c.G172A p.E58K . . . DNAH14 127602 broad.mit.edu 36 1 223207093 223207093 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144989 exon2 c.G66T p.K22N . . . LBR 3930 broad.mit.edu 36 1 223657693 223657693 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194442 exon14 c.T1783C p.Y595H . . . ENAH 55740 broad.mit.edu 36 1 223752705 223752705 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018212 exon13 c.G1642T p.E548X . . . TMEM63A 9725 broad.mit.edu 36 1 224107017 224107017 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014698 exon20 c.G1874A p.S625N . . . C1orf55 163859 broad.mit.edu 36 1 224239826 224239826 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152608 exon7 c.G1156T p.D386Y . . . C1orf55 163859 broad.mit.edu 36 1 224242257 224242257 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152608 exon6 c.C1097T p.A366V . . . ACBD3 64746 broad.mit.edu 36 1 224415871 224415871 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022735 exon4 c.C712T p.R238W . . . LIN9 286826 broad.mit.edu 36 1 224520575 224520575 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173083 exon9 c.C946T p.R316W . . . ADCK3 56997 broad.mit.edu 36 1 225219616 225219616 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020247 exon3 c.G470A p.G157D . . . CDC42BPA 8476 broad.mit.edu 36 1 225346280 225346280 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014826 exon15 c.A2042G p.K681R . . . CDC42BPA 8476 broad.mit.edu 36 1 225374159 225374159 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014826 exon12 c.C1616T p.T539M . . . ZNF678 339500 broad.mit.edu 36 1 225908875 225908875 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178549 exon4 c.G466T p.E156X . . . ZNF678 339500 broad.mit.edu 36 1 225909512 225909512 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178549 exon4 c.G1103T p.R368I . . . ZNF678 339500 broad.mit.edu 36 1 225909680 225909680 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178549 exon4 c.G1271T p.R424I . . . ZNF678 339500 broad.mit.edu 36 1 225909864 225909864 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178549 exon4 c.G1455T p.E485D . . . ZNF678 339500 broad.mit.edu 36 1 225910100 225910100 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178549 exon4 c.G1691T p.R564I . . . SNAP47 116841 broad.mit.edu 36 1 226013779 226013779 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_053052 exon3 c.G1093A p.A365T . . . OBSCN 84033 broad.mit.edu 36 1 226499759 226499759 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052843 exon12 c.G3504T p.K1168N . . . OBSCN 84033 broad.mit.edu 36 1 226499867 226499867 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052843 exon12 c.G3612T p.K1204N . . . OBSCN 84033 broad.mit.edu 36 1 226543002 226543002 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052843 exon38 c.G10129A p.A3377T . . . OBSCN 84033 broad.mit.edu 36 1 226572226 226572226 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052843 exon53 c.G13860A p.P4620P . . . OBSCN 84033 broad.mit.edu 36 1 226575937 226575937 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052843 exon55 c.G14772T p.K4924N . . . OBSCN 84033 broad.mit.edu 36 1 226605178 226605178 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052843 exon77 c.C18330T p.F6110F . . . OBSCN 84033 broad.mit.edu 36 1 226623177 226623177 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098623 exon89 c.G19899T p.E6633D . . . ZBTB40 9923 broad.mit.edu 36 1 22689362 22689362 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014870 exon2 c.C334A p.L112I . . . ACTA1 58 broad.mit.edu 36 1 227634257 227634257 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100 exon6 c.G824A p.G275D . . . NUP133 55746 broad.mit.edu 36 1 227700634 227700634 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018230 exon6 c.C691T p.R231W . . . EPHA8 2046 broad.mit.edu 36 1 22775454 22775454 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020526 exon3 c.G317A p.R106H . . . URB2 9816 broad.mit.edu 36 1 227837555 227837555 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014777 exon4 c.G572T p.R191I . . . URB2 9816 broad.mit.edu 36 1 227838115 227838115 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014777 exon4 c.G1132A p.D378N . . . URB2 9816 broad.mit.edu 36 1 227838357 227838357 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014777 exon4 c.G1374T p.Q458H . . . URB2 9816 broad.mit.edu 36 1 227845960 227845960 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014777 exon5 c.T3692C p.F1231S . . . EPHA8 2046 broad.mit.edu 36 1 22788454 22788454 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001006943 exon5 c.C1483A p.L495I . . . GALNT2 2590 broad.mit.edu 36 1 228438789 228438789 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004481 exon5 c.C541T p.P181S . . . AGT 183 broad.mit.edu 36 1 228913030 228913030 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000029 exon2 c.G190T p.D64Y . . . TTC13 79573 broad.mit.edu 36 1 229127277 229127277 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024525 exon14 c.C1654T p.R552X . . . TTC13 79573 broad.mit.edu 36 1 229163624 229163624 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024525 exon2 c.C320A p.S107X . . . TRIM67 440730 broad.mit.edu 36 1 229409041 229409041 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004342 exon7 c.G1701T p.E567D . . . TRIM67 440730 broad.mit.edu 36 1 229411444 229411444 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004342 exon8 c.G1948A p.V650M . . . C1orf131 128061 broad.mit.edu 36 1 229441413 229441413 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152379 exon2 c.C263T p.S88L . . . EGLN1 54583 broad.mit.edu 36 1 229573048 229573048 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022051 exon3 c.G1031A p.R344Q . . . DISC1 27185 broad.mit.edu 36 1 229897043 229897043 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164539 exon2 c.G916A p.D306N . . . DISC1 27185 broad.mit.edu 36 1 229952321 229952321 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164539 exon4 c.G1144T p.D382Y . . . SIPA1L2 57568 broad.mit.edu 36 1 230617888 230617888 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020808 exon17 c.C4737T p.L1579L . . . SIPA1L2 57568 broad.mit.edu 36 1 230630788 230630788 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020808 exon15 c.C4402T p.R1468X . . . SIPA1L2 57568 broad.mit.edu 36 1 230716471 230716471 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020808 exon1 c.G1238T p.R413I . . . KIAA1383 54627 broad.mit.edu 36 1 231009248 231009248 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_019090 exon1 c.A1856C p.K619T . . . PCNXL2 80003 broad.mit.edu 36 1 231219316 231219316 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014801 exon27 c.C4813A p.Q1605K . . . PCNXL2 80003 broad.mit.edu 36 1 231227725 231227725 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014801 exon26 c.C4395T p.G1465G . . . KIAA1804 84451 broad.mit.edu 36 1 231557255 231557255 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032435 exon4 c.G1186A p.E396K . . . KIAA1804 84451 broad.mit.edu 36 1 231581539 231581539 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032435 exon9 c.G2164T p.A722S . . . SLC35F3 148641 broad.mit.edu 36 1 232433991 232433991 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173508 exon3 c.C489T p.F163F . . . KDM1A 23028 broad.mit.edu 36 1 23254210 23254210 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009999 exon6 c.C852T p.F284F . . . RBM34 23029 broad.mit.edu 36 1 233390987 233390987 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001161533 exon2 c.C72T p.G24G . . . ARID4B 51742 broad.mit.edu 36 1 233454674 233454674 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031371 exon12 c.C937A p.L313I . . . GGPS1 9453 broad.mit.edu 36 1 233572443 233572443 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037277 exon4 c.G636T p.K212N . . . GNG4 2786 broad.mit.edu 36 1 233782064 233782064 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004485 exon3 c.C196T p.R66C . . . LYST 1130 broad.mit.edu 36 1 233892896 233892896 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000081 exon53 c.C11373A p.F3791L . . . LYST 1130 broad.mit.edu 36 1 234039017 234039017 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000081 exon5 c.C1724T p.S575L . . . LYST 1130 broad.mit.edu 36 1 234039233 234039233 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000081 exon5 c.G1508A p.R503Q . . . LYST 1130 broad.mit.edu 36 1 234039527 234039527 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000081 exon5 c.T1214C p.L405S . . . LYST 1130 broad.mit.edu 36 1 234039756 234039756 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000081 exon5 c.C985T p.R329X . . . LYST 1130 broad.mit.edu 36 1 234040343 234040343 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000081 exon5 c.T398C p.V133A . . . NID1 4811 broad.mit.edu 36 1 234207883 234207883 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002508 exon20 c.C3651T p.G1217G . . . NID1 4811 broad.mit.edu 36 1 234210516 234210516 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002508 exon17 c.C3288T p.D1096D . . . NID1 4811 broad.mit.edu 36 1 234223754 234223754 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002508 exon13 c.C2569A p.L857I . . . NID1 4811 broad.mit.edu 36 1 234255975 234255975 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002508 exon8 c.C1828T p.R610C . . . GPR137B 7107 broad.mit.edu 36 1 234435099 234435099 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003272 exon6 c.C1017T p.F339F . . . ERO1LB 56605 broad.mit.edu 36 1 234450791 234450791 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019891 exon15 c.G1307A p.R436Q . . . ERO1LB 56605 broad.mit.edu 36 1 234451891 234451891 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019891 exon14 c.G1165A p.D389N . . . ERO1LB 56605 broad.mit.edu 36 1 234466212 234466212 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019891 exon7 c.G615T p.E205D . . . LGALS8 3964 broad.mit.edu 36 1 234777935 234777935 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201544 exon10 c.A805G p.M269V . . . HEATR1 55127 broad.mit.edu 36 1 234815130 234815130 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018072 exon17 c.T2059G p.L687V . . . HEATR1 55127 broad.mit.edu 36 1 234817336 234817336 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018072 exon14 c.G1704T p.K568N . . . HEATR1 55127 broad.mit.edu 36 1 234833102 234833102 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018072 exon3 c.C340A p.L114M . . . RYR2 6262 broad.mit.edu 36 1 235599508 235599508 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001035 exon6 c.C361T p.L121L . . . RYR2 6262 broad.mit.edu 36 1 235741655 235741655 + Missense_Mutation SNP C A A rs4336838 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001035 exon24 c.C2763A p.F921L . . . RYR2 6262 broad.mit.edu 36 1 235823505 235823505 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001035 exon33 c.G4382T p.R1461I . . . RYR2 6262 broad.mit.edu 36 1 235847315 235847315 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001035 exon38 c.G5822A p.R1941H . . . RYR2 6262 broad.mit.edu 36 1 235962012 235962012 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001035 exon78 c.G10979T p.R3660I . . . RYR2 6262 broad.mit.edu 36 1 236014340 236014340 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001035 exon90 c.C12705A p.F4235L . . . ZP4 57829 broad.mit.edu 36 1 236116725 236116725 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021186 exon6 c.C808T p.R270C . . . ZP4 57829 broad.mit.edu 36 1 236118301 236118301 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021186 exon4 c.C533A p.S178Y . . . ASAP3 55616 broad.mit.edu 36 1 23638306 23638306 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001143778 exon10 c.C922T p.R308X . . . RPL11 6135 broad.mit.edu 36 1 23894974 23894974 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000975 exon5 c.T496C p.F166L . . . RGS7 6000 broad.mit.edu 36 1 239032833 239032833 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002924 exon16 c.G1353T p.K451N . . . RGS7 6000 broad.mit.edu 36 1 239044667 239044667 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002924 exon12 c.C817T p.R273W . . . FH 2271 broad.mit.edu 36 1 239736023 239736023 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000143 exon6 c.C807A p.I269I . . . FH 2271 broad.mit.edu 36 1 239741977 239741977 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000143 exon4 c.C468T p.V156V . . . KMO 8564 broad.mit.edu 36 1 239816631 239816631 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003679 exon11 c.G985A p.E329K . . . KMO 8564 broad.mit.edu 36 1 239818722 239818722 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003679 exon12 c.G1065A p.A355A . . . WDR64 128025 broad.mit.edu 36 1 239968360 239968360 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144625 exon10 c.G1237A p.D413N . . . WDR64 128025 broad.mit.edu 36 1 240013263 240013263 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144625 exon22 c.G2632T p.E878X . . . PLD5 200150 broad.mit.edu 36 1 240330619 240330619 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195811 exon9 c.T1142C p.M381T . . . FUCA1 2517 broad.mit.edu 36 1 24053454 24053454 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000147 exon5 c.G952T p.E318X . . . FUCA1 2517 broad.mit.edu 36 1 24053615 24053615 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000147 exon5 c.G791A p.R264Q . . . CEP170 9859 broad.mit.edu 36 1 241395730 241395730 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042405 exon12 c.C1861A p.L621I . . . CEP170 9859 broad.mit.edu 36 1 241421353 241421353 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042405 exon8 c.C698A p.P233H . . . CEP170 9859 broad.mit.edu 36 1 241430554 241430554 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042405 exon6 c.G385T p.E129X . . . SDCCAG8 10806 broad.mit.edu 36 1 241538092 241538092 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006642 exon8 c.A919C p.R307R . . . AKT3 10000 broad.mit.edu 36 1 241875822 241875822 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181690 exon4 c.G425T p.R142I . . . ADSS 159 broad.mit.edu 36 1 242641241 242641241 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001126 exon12 c.G1289A p.R430Q . . . C1orf101 257044 broad.mit.edu 36 1 242790866 242790866 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173807 exon10 c.G1303T p.D435Y . . . PPPDE1 51029 broad.mit.edu 36 1 242921902 242921902 + Nonsense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_016076 exon4 c.T308G p.L103X . . . PPPDE1 51029 broad.mit.edu 36 1 242935484 242935484 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016076 exon5 c.C355A p.L119I . . . IL22RA1 58985 broad.mit.edu 36 1 24337670 24337670 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021258 exon2 c.C165T p.I55I . . . SMYD3 64754 broad.mit.edu 36 1 244157876 244157876 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022743 exon7 c.G505A p.D169N . . . SMYD3 64754 broad.mit.edu 36 1 244560444 244560444 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022743 exon4 c.G178T p.E60X . . . TFB2M 64216 broad.mit.edu 36 1 244795803 244795803 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022366 exon1 c.C261A p.I87I . . . CNST 163882 broad.mit.edu 36 1 244851404 244851404 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152609 exon3 c.G430A p.A144T . . . ZNF670 93474 broad.mit.edu 36 1 245267734 245267734 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033213 exon4 c.A810G p.I270M . . . C1orf201 90529 broad.mit.edu 36 1 24560070 24560070 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199013 exon8 c.G786A p.P262P . . . NLRP3 114548 broad.mit.edu 36 1 245653214 245653214 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004895 exon2 c.G343T p.E115X . . . NLRP3 114548 broad.mit.edu 36 1 245665944 245665944 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004895 exon6 c.G2548T p.V850L . . . NLRP3 114548 broad.mit.edu 36 1 245666013 245666013 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004895 exon6 c.G2617A p.A873T . . . OR2B11 127623 broad.mit.edu 36 1 245681333 245681333 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004492 exon1 c.C575T p.S192L . . . OR2G3 81469 broad.mit.edu 36 1 245835664 245835664 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001914 exon1 c.G154T p.D52Y . . . OR2G3 81469 broad.mit.edu 36 1 245836081 245836081 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001914 exon1 c.G571A p.D191N . . . OR13G1 441933 broad.mit.edu 36 1 245902291 245902291 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005487 exon1 c.C676A p.R226S . . . OR6F1 343169 broad.mit.edu 36 1 245942177 245942177 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005286 exon1 c.C504T p.F168F . . . OR1C1 26188 broad.mit.edu 36 1 245987801 245987801 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012353 exon1 c.C531A p.F177L . . . TRIM58 25893 broad.mit.edu 36 1 246094686 246094686 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015431 exon3 c.C573A p.G191G . . . OR2T8 343172 broad.mit.edu 36 1 246151579 246151579 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005522 exon1 c.C637A p.L213M . . . OR2L8 391190 broad.mit.edu 36 1 246179023 246179023 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001963 exon1 c.G241A p.A81T . . . OR2L2 26246 broad.mit.edu 36 1 246268340 246268340 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004686 exon1 c.T148G p.L50V . . . OR2L13 284521 broad.mit.edu 36 1 246329447 246329447 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175911 exon3 c.C147T p.H49H . . . OR2L13 284521 broad.mit.edu 36 1 246330090 246330090 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175911 exon3 c.C790A p.L264I . . . OR2M5 127059 broad.mit.edu 36 1 246375482 246375482 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004690 exon1 c.G410T p.R137I . . . OR2M5 127059 broad.mit.edu 36 1 246375573 246375573 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004690 exon1 c.C501A p.S167S . . . OR2M3 127062 broad.mit.edu 36 1 246433332 246433332 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004689 exon1 c.C340A p.L114I . . . OR2M3 127062 broad.mit.edu 36 1 246433788 246433788 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004689 exon1 c.C796T p.R266C . . . OR2M7 391196 broad.mit.edu 36 1 246553703 246553703 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004691 exon1 c.C791A p.S264Y . . . OR2T6 254879 broad.mit.edu 36 1 246618182 246618182 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005471 exon1 c.C650T p.S217F . . . NIPAL3 57185 broad.mit.edu 36 1 24663118 24663118 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020448 exon11 c.C942A p.F314L . . . OR2T1 26696 broad.mit.edu 36 1 246636053 246636053 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030904 exon1 c.C135T p.I45I . . . OR2G6 391211 broad.mit.edu 36 1 246752434 246752434 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001013355 exon1 c.T864C p.I288I . . . OR2T34 127068 broad.mit.edu 36 1 246804045 246804045 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001821 exon1 c.C637T p.L213F . . . OR2T34 127068 broad.mit.edu 36 1 246804373 246804373 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001821 exon1 c.G309A p.G103G . . . OR2T10 127069 broad.mit.edu 36 1 246822882 246822882 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004693 exon1 c.G811T p.D271Y . . . ZNF692 55657 broad.mit.edu 36 1 247117125 247117125 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017865 exon6 c.G644A p.S215N . . . SRRM1 10250 broad.mit.edu 36 1 24845748 24845748 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005839 exon3 c.G115T p.D39Y . . . SRRM1 10250 broad.mit.edu 36 1 24870514 24870514 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005839 exon16 c.G2451T p.K817N . . . CLIC4 25932 broad.mit.edu 36 1 25013272 25013272 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013943 exon3 c.C283A p.L95I . . . RHD 6007 broad.mit.edu 36 1 25500674 25500674 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127691 exon5 c.C711A p.A237A . . . TMEM50A 23585 broad.mit.edu 36 1 25539585 25539585 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014313 exon2 c.C21A p.G7G . . . TMEM57 55219 broad.mit.edu 36 1 25653364 25653364 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018202 exon4 c.C377A p.S126Y . . . LDLRAP1 26119 broad.mit.edu 36 1 25761775 25761775 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015627 exon5 c.T513G p.F171L . . . MAN1C1 57134 broad.mit.edu 36 1 25885569 25885569 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020379 exon2 c.G592A p.E198K . . . STMN1 3925 broad.mit.edu 36 1 26100132 26100132 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203399 exon5 c.G412T p.E138X . . . PAFAH2 5051 broad.mit.edu 36 1 26188647 26188647 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000437 exon3 c.A123G p.Q41Q . . . TRIM63 84676 broad.mit.edu 36 1 26265437 26265437 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032588 exon2 c.G241A p.E81K . . . PDIK1L 149420 broad.mit.edu 36 1 26313635 26313635 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152835 exon2 c.G249T p.K83N . . . CNKSR1 10256 broad.mit.edu 36 1 26379813 26379813 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006314 exon3 c.G231T p.E77D . . . CATSPER4 378807 broad.mit.edu 36 1 26390388 26390388 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198137 exon2 c.C237A p.F79L . . . CATSPER4 378807 broad.mit.edu 36 1 26396812 26396812 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198137 exon4 c.C508T p.R170W . . . CCDC21 64793 broad.mit.edu 36 1 26476351 26476351 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022778 exon14 c.G2269T p.E757X . . . UBXN11 91544 broad.mit.edu 36 1 26481623 26481623 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077262 exon11 c.G957T p.E319D . . . PIGV 55650 broad.mit.edu 36 1 26993759 26993759 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017837 exon3 c.C647A p.S216Y . . . GPATCH3 63906 broad.mit.edu 36 1 27099180 27099180 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022078 exon1 c.C341T p.A114V . . . FAM46B 115572 broad.mit.edu 36 1 27205753 27205753 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052943 exon2 c.G547A p.D183N . . . SLC9A1 6548 broad.mit.edu 36 1 27301618 27301618 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003047 exon8 c.G1665T p.K555N . . . WDTC1 23038 broad.mit.edu 36 1 27482518 27482518 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015023 exon5 c.C282A p.F94L . . . WDTC1 23038 broad.mit.edu 36 1 27502863 27502863 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015023 exon14 c.T1630G p.F544V . . . PHACTR4 65979 broad.mit.edu 36 1 28659327 28659327 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_023923 exon3 c.T238C p.S80P . . . PHACTR4 65979 broad.mit.edu 36 1 28664823 28664823 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023923 exon4 c.G342T p.K114N . . . RCC1 1104 broad.mit.edu 36 1 28735475 28735475 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001269 exon8 c.C932T p.S311L . . . TRNAU1AP 54952 broad.mit.edu 36 1 28766511 28766511 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017846 exon6 c.G529A p.A177T . . . YTHDF2 51441 broad.mit.edu 36 1 28943072 28943072 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001172828 exon3 c.A1553G p.E518G . . . PTPRU 10076 broad.mit.edu 36 1 29459806 29459806 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005704 exon7 c.G948A p.P316P . . . PTPRU 10076 broad.mit.edu 36 1 29524369 29524369 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005704 exon30 c.G4222A p.V1408I . . . SDC3 9672 broad.mit.edu 36 1 31119942 31119942 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014654 exon4 c.C951T p.F317F . . . SPOCD1 90853 broad.mit.edu 36 1 32032050 32032050 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144569 exon12 c.G2419A p.E807K . . . SPOCD1 90853 broad.mit.edu 36 1 32053001 32053001 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144569 exon2 c.C521A p.S174Y . . . PTP4A2 8073 broad.mit.edu 36 1 32147069 32147069 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195101 exon4 c.G382T p.D128Y . . . KPNA6 23633 broad.mit.edu 36 1 32395092 32395092 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012316 exon3 c.G190A p.D64N . . . TXLNA 200081 broad.mit.edu 36 1 32419465 32419465 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175852 exon3 c.C205T p.R69C . . . LCK 3932 broad.mit.edu 36 1 32514117 32514117 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042771 exon7 c.C497T p.S166L . . . TSSK3 81629 broad.mit.edu 36 1 32600990 32600990 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052841 exon1 c.G101T p.R34I . . . ZBTB8A 653121 broad.mit.edu 36 1 32831601 32831601 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040441 exon3 c.C482A p.S161Y . . . SYNC 81493 broad.mit.edu 36 1 32933170 32933170 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161708 exon2 c.G1116T p.K372N . . . KIAA1522 57648 broad.mit.edu 36 1 33009161 33009161 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198972 exon6 c.G1617T p.L539L . . . YARS 8565 broad.mit.edu 36 1 33020689 33020689 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003680 exon9 c.C945T p.V315V . . . FNDC5 252995 broad.mit.edu 36 1 33106391 33106391 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153756 exon3 c.C171A p.A57A . . . PRDM16 63976 broad.mit.edu 36 1 3318358 3318358 + Silent SNP C T T rs35579804 by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022114 exon9 c.C1737T p.F579F . . . AK2 204 broad.mit.edu 36 1 33251566 33251566 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001625 exon6 c.C523T p.R175X . . . ZNF362 149076 broad.mit.edu 36 1 33537218 33537218 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152493 exon9 c.G1247A p.R416Q . . . PHC2 1912 broad.mit.edu 36 1 33613696 33613696 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198040 exon1 c.C32A p.S11Y . . . ZSCAN20 7579 broad.mit.edu 36 1 33732755 33732755 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145238 exon8 c.G2224T p.E742X . . . CSMD2 114784 broad.mit.edu 36 1 33936988 33936988 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052896 exon24 c.C3757A p.L1253M . . . CSMD2 114784 broad.mit.edu 36 1 33981749 33981749 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052896 exon14 c.C1772A p.S591Y . . . CSMD2 114784 broad.mit.edu 36 1 34030618 34030618 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052896 exon11 c.C1423A p.L475I . . . HMGB4 127540 broad.mit.edu 36 1 34102879 34102879 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145205 exon2 c.G500T p.R167M . . . C1orf94 84970 broad.mit.edu 36 1 34439096 34439096 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032884 exon3 c.G576A p.P192P . . . DLGAP3 58512 broad.mit.edu 36 1 35137900 35137900 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080418 exon3 c.G1343A p.R448Q . . . ZMYM1 79830 broad.mit.edu 36 1 35351307 35351307 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024772 exon10 c.C1289A p.S430Y . . . SFPQ 6421 broad.mit.edu 36 1 35426180 35426180 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005066 exon7 c.G1796A p.R599Q . . . SFPQ 6421 broad.mit.edu 36 1 35427446 35427446 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005066 exon5 c.G1540A p.D514N . . . SFPQ 6421 broad.mit.edu 36 1 35429539 35429539 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005066 exon2 c.T1007G p.F336C . . . ZMYM4 9202 broad.mit.edu 36 1 35563559 35563559 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005095 exon2 c.A51C p.K17N . . . ZMYM4 9202 broad.mit.edu 36 1 35623636 35623636 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005095 exon10 c.G1576A p.A526T . . . ZMYM4 9202 broad.mit.edu 36 1 35656658 35656658 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005095 exon29 c.G4337A p.R1446Q . . . CLSPN 63967 broad.mit.edu 36 1 35977338 35977338 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190481 exon19 c.G3224A p.R1075Q . . . CLSPN 63967 broad.mit.edu 36 1 35987702 35987702 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190481 exon11 c.A2033G p.E678G . . . CLSPN 63967 broad.mit.edu 36 1 35999068 35999068 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190481 exon8 c.C1041A p.I347I . . . EIF2C4 192670 broad.mit.edu 36 1 36055135 36055135 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017629 exon2 c.C85T p.R29X . . . EIF2C4 192670 broad.mit.edu 36 1 36088439 36088439 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017629 exon16 c.G2270T p.G757V . . . EIF2C1 26523 broad.mit.edu 36 1 36131325 36131325 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012199 exon4 c.G371T p.R124L . . . EIF2C1 26523 broad.mit.edu 36 1 36157789 36157789 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012199 exon19 c.C2568T p.F856F . . . EIF2C3 192669 broad.mit.edu 36 1 36211696 36211696 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024852 exon5 c.G655A p.D219N . . . ADPRHL2 54936 broad.mit.edu 36 1 36330634 36330634 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017825 exon5 c.C726A p.Y242X . . . THRAP3 9967 broad.mit.edu 36 1 36520834 36520834 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005119 exon3 c.C83T p.S28L . . . STK40 83931 broad.mit.edu 36 1 36581568 36581568 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032017 exon11 c.C1073T p.A358V . . . CCDC27 148870 broad.mit.edu 36 1 3670181 3670181 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152492 exon8 c.G1373A p.R458Q . . . GRIK3 2899 broad.mit.edu 36 1 37043339 37043339 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000831 exon15 c.C2401T p.R801W . . . GRIK3 2899 broad.mit.edu 36 1 37063886 37063886 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000831 exon11 c.C1659T p.S553S . . . GRIK3 2899 broad.mit.edu 36 1 37080004 37080004 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000831 exon10 c.C1450T p.R484W . . . KIAA0562 9731 broad.mit.edu 36 1 3743074 3743074 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014704 exon10 c.C1162T p.R388C . . . KIAA0562 9731 broad.mit.edu 36 1 3755042 3755042 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014704 exon3 c.C277T p.R93X . . . RSPO1 284654 broad.mit.edu 36 1 37854777 37854777 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001038633 exon5 c.C252T p.F84F . . . MTF1 4520 broad.mit.edu 36 1 38053772 38053772 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005955 exon11 c.G1885T p.E629X . . . RRAGC 64121 broad.mit.edu 36 1 39090729 39090729 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022157 exon4 c.C660A p.I220I . . . RRAGC 64121 broad.mit.edu 36 1 39095206 39095206 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022157 exon2 c.G373T p.D125Y . . . MYCBP 26292 broad.mit.edu 36 1 39105195 39105195 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012333 exon4 c.G211A p.E71K . . . GJA9 81025 broad.mit.edu 36 1 39113463 39113463 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030772 exon2 c.A895C p.S299R . . . NDUFS5 4725 broad.mit.edu 36 1 39267167 39267167 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004552 exon2 c.G184T p.D62Y . . . NDUFS5 4725 broad.mit.edu 36 1 39272657 39272657 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004552 exon3 c.C223T p.R75C . . . MACF1 23499 broad.mit.edu 36 1 39521719 39521719 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012090 exon10 c.C875T p.S292L . . . MACF1 23499 broad.mit.edu 36 1 39531875 39531875 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012090 exon19 c.C2166A p.F722L . . . MACF1 23499 broad.mit.edu 36 1 39560910 39560910 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012090 exon33 c.C4088T p.S1363L . . . MACF1 23499 broad.mit.edu 36 1 39571831 39571831 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033044 exon1 c.G2304A p.K768K . . . MACF1 23499 broad.mit.edu 36 1 39623784 39623784 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012090 exon53 c.C7754A p.S2585Y . . . MACF1 23499 broad.mit.edu 36 1 39626042 39626042 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012090 exon54 c.C8755T p.R2919W . . . KIAA0754 643314 broad.mit.edu 36 1 39649845 39649845 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015038 exon1 c.G1321A p.G441R . . . KIAA0754 643314 broad.mit.edu 36 1 39650158 39650158 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015038 exon1 c.C1634A p.S545Y . . . KIAA0754 643314 broad.mit.edu 36 1 39652670 39652670 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015038 exon1 c.G4146T p.E1382D . . . MACF1 23499 broad.mit.edu 36 1 39665824 39665824 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012090 exon58 c.C10241A p.P3414H . . . HEYL 26508 broad.mit.edu 36 1 39870966 39870966 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014571 exon2 c.C89T p.A30V . . . TRIT1 54802 broad.mit.edu 36 1 40091101 40091101 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017646 exon4 c.G449A p.R150Q . . . CAP1 10487 broad.mit.edu 36 1 40304560 40304560 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006367 exon7 c.G611A p.G204E . . . RLF 6018 broad.mit.edu 36 1 40475123 40475123 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012421 exon8 c.G2162A p.R721Q . . . RLF 6018 broad.mit.edu 36 1 40475394 40475394 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012421 exon8 c.C2433A p.F811L . . . RLF 6018 broad.mit.edu 36 1 40478169 40478169 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_012421 exon8 c.A5208C p.E1736D . . . RLF 6018 broad.mit.edu 36 1 40478470 40478470 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012421 exon8 c.C5509A p.H1837N . . . SMAP2 64744 broad.mit.edu 36 1 40651278 40651278 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198979 exon5 c.G391T p.E131X . . . ZNF643 65243 broad.mit.edu 36 1 40701643 40701643 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023070 exon5 c.G1400T p.R467I . . . ZNF642 339559 broad.mit.edu 36 1 40720097 40720097 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198494 exon3 c.C203T p.P68L . . . KCNQ4 9132 broad.mit.edu 36 1 41076611 41076611 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004700 exon14 c.C1917A p.F639L . . . SCMH1 22955 broad.mit.edu 36 1 41313521 41313521 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172218 exon10 c.C722A p.P241H . . . SCMH1 22955 broad.mit.edu 36 1 41351615 41351615 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172218 exon9 c.C459T p.F153F . . . HIVEP3 59269 broad.mit.edu 36 1 41763092 41763092 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024503 exon6 c.C5284T p.R1762C . . . HIVEP3 59269 broad.mit.edu 36 1 41813810 41813810 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024503 exon5 c.C5199T p.F1733F . . . FOXJ3 22887 broad.mit.edu 36 1 42466221 42466221 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198851 exon7 c.T448C p.S150P . . . ZMYND12 84217 broad.mit.edu 36 1 42674724 42674724 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032257 exon5 c.C672T p.F224F . . . PPCS 79717 broad.mit.edu 36 1 42697978 42697978 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077447 exon3 c.C211T p.R71W . . . CCDC30 728621 broad.mit.edu 36 1 42804665 42804665 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080850 exon6 c.C787T p.R263X . . . CCDC30 728621 broad.mit.edu 36 1 42849308 42849308 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080850 exon10 c.G1456T p.E486X . . . CCDC30 728621 broad.mit.edu 36 1 42884396 42884396 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080850 exon14 c.C1894A p.L632I . . . CCDC30 728621 broad.mit.edu 36 1 42884461 42884461 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080850 exon14 c.G1959T p.K653N . . . CCDC30 728621 broad.mit.edu 36 1 42892207 42892207 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080850 exon16 c.C2273A p.S758Y . . . LEPRE1 64175 broad.mit.edu 36 1 42986029 42986029 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022356 exon13 c.C1866T p.F622F . . . ERMAP 114625 broad.mit.edu 36 1 43075424 43075424 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017922 exon7 c.C592A p.L198I . . . FAM183A 440585 broad.mit.edu 36 1 43389046 43389046 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001101376 exon2 c.C161A p.S54Y . . . EBNA1BP2 10969 broad.mit.edu 36 1 43405431 43405431 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006824 exon6 c.G600T p.K200N . . . MPL 4352 broad.mit.edu 36 1 43590782 43590782 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005373 exon12 c.G1660A p.A554T . . . KIAA0467 23334 broad.mit.edu 36 1 43666605 43666605 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015284 exon13 c.C1330A p.L444I . . . KIAA0467 23334 broad.mit.edu 36 1 43667982 43667982 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015284 exon14 c.C1491T p.S497S . . . KIAA0467 23334 broad.mit.edu 36 1 43669286 43669286 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015284 exon18 c.C2157A p.V719V . . . KIAA0467 23334 broad.mit.edu 36 1 43676989 43676989 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015284 exon32 c.C3844A p.L1282I . . . PTPRF 5792 broad.mit.edu 36 1 43792196 43792196 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130440 exon5 c.G376A p.E126K . . . KDM4A 9682 broad.mit.edu 36 1 43942354 43942354 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014663 exon21 c.G3038T p.R1013I . . . ST3GAL3 6487 broad.mit.edu 36 1 44137806 44137806 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_174964 exon9 c.T609C p.N203N . . . ATP6V0B 533 broad.mit.edu 36 1 44215470 44215470 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004047 exon7 c.C586A p.L196I . . . ERI3 79033 broad.mit.edu 36 1 44577405 44577405 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024066 exon3 c.G388A p.A130T . . . KIF2C 11004 broad.mit.edu 36 1 44995865 44995865 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006845 exon11 c.C1028A p.T343N . . . HECTD3 79654 broad.mit.edu 36 1 45241982 45241982 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024602 exon20 c.C2447T p.A816V . . . HECTD3 79654 broad.mit.edu 36 1 45248939 45248939 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024602 exon2 c.C396T p.D132D . . . UROD 7389 broad.mit.edu 36 1 45252270 45252270 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000374 exon6 c.C577T p.R193C . . . MUTYH 4595 broad.mit.edu 36 1 45570539 45570539 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001048173 exon10 c.C735A p.A245A . . . MUTYH 4595 broad.mit.edu 36 1 45572738 45572738 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001048173 exon2 c.A27G p.G9G . . . PRDX1 5052 broad.mit.edu 36 1 45753980 45753980 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181696 exon3 c.G193T p.E65X . . . IPP 3652 broad.mit.edu 36 1 45965940 45965940 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005897 exon5 c.G998A p.R333Q . . . IPP 3652 broad.mit.edu 36 1 45979253 45979253 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005897 exon3 c.G631T p.D211Y . . . IPP 3652 broad.mit.edu 36 1 45984430 45984430 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005897 exon2 c.C241A p.L81I . . . PIK3R3 8503 broad.mit.edu 36 1 46282077 46282077 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003629 exon10 c.G1241A p.G414D . . . PIK3R3 8503 broad.mit.edu 36 1 46284217 46284217 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003629 exon9 c.C1147T p.R383C . . . PIK3R3 8503 broad.mit.edu 36 1 46294078 46294078 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003629 exon7 c.G917A p.R306Q . . . TSPAN1 10103 broad.mit.edu 36 1 46422575 46422575 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005727 exon4 c.C183T p.I61I . . . C1orf190 541468 broad.mit.edu 36 1 46458021 46458021 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013615 exon2 c.G262A p.E88K . . . ATPAF1 64756 broad.mit.edu 36 1 46892124 46892124 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022745 exon5 c.T492G p.I164M . . . CYP4B1 1580 broad.mit.edu 36 1 47056419 47056419 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001099772 exon11 c.G1302T p.E434D . . . CYP4A11 1579 broad.mit.edu 36 1 47179608 47179608 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000778 exon1 c.C85A p.L29M . . . CYP4X1 260293 broad.mit.edu 36 1 47287683 47287683 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178033 exon11 c.C1275A p.V425V . . . AJAP1 55966 broad.mit.edu 36 1 4729855 4729855 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042478 exon3 c.A912C p.K304N . . . AJAP1 55966 broad.mit.edu 36 1 4734386 4734386 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042478 exon5 c.C1203T p.F401F . . . CYP4Z1 199974 broad.mit.edu 36 1 47353837 47353837 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178134 exon10 c.C1251A p.F417L . . . STIL 6491 broad.mit.edu 36 1 47508021 47508021 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001048166 exon14 c.G2488A p.D830N . . . STIL 6491 broad.mit.edu 36 1 47518861 47518861 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001048166 exon12 c.C1856A p.S619Y . . . STIL 6491 broad.mit.edu 36 1 47534042 47534042 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001048166 exon7 c.C767A p.S256Y . . . SLC5A9 200010 broad.mit.edu 36 1 48476017 48476017 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001135181 exon12 c.G1447A p.D483N . . . SPATA6 54558 broad.mit.edu 36 1 48544053 48544053 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019073 exon12 c.G1279A p.E427K . . . SPATA6 54558 broad.mit.edu 36 1 48637852 48637852 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019073 exon7 c.C538A p.Q180K . . . BEND5 79656 broad.mit.edu 36 1 48997312 48997312 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024603 exon3 c.C592T p.R198C . . . EPS15 2060 broad.mit.edu 36 1 51637293 51637293 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159969 exon8 c.C1109T p.S370L . . . EPS15 2060 broad.mit.edu 36 1 51644221 51644221 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159969 exon4 c.G679T p.E227X . . . RAB3B 5865 broad.mit.edu 36 1 52215225 52215225 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002867 exon2 c.C153T p.F51F . . . TXNDC12 51060 broad.mit.edu 36 1 52262815 52262815 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015913 exon5 c.G310T p.D104Y . . . ZFYVE9 9372 broad.mit.edu 36 1 52576060 52576060 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007324 exon15 c.G3522T p.E1174D . . . ZFYVE9 9372 broad.mit.edu 36 1 52583111 52583111 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_007324 exon17 c.A3846C p.K1282N . . . ORC1 4998 broad.mit.edu 36 1 52626784 52626784 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190818 exon8 c.G1301A p.R434K . . . ORC1 4998 broad.mit.edu 36 1 52631800 52631800 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190818 exon6 c.G985T p.D329Y . . . PRPF38A 84950 broad.mit.edu 36 1 52646914 52646914 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032864 exon3 c.G376A p.D126N . . . ZCCHC11 23318 broad.mit.edu 36 1 52716022 52716022 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009881 exon12 c.G1969T p.D657Y . . . CPT2 1376 broad.mit.edu 36 1 53449102 53449102 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000098 exon4 c.G1168T p.D390Y . . . LRP8 7804 broad.mit.edu 36 1 53489069 53489069 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017522 exon15 c.C1945T p.R649W . . . GLIS1 148979 broad.mit.edu 36 1 53832500 53832500 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147193 exon3 c.G664A p.D222N . . . TMEM48 55706 broad.mit.edu 36 1 54031535 54031535 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018087 exon14 c.G1590T p.K530N . . . YIPF1 54432 broad.mit.edu 36 1 54098341 54098341 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018982 exon10 c.C905T p.A302V . . . YIPF1 54432 broad.mit.edu 36 1 54121508 54121508 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018982 exon4 c.G61A p.A21T . . . DIO1 1733 broad.mit.edu 36 1 54132684 54132684 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039716 exon1 c.C213A p.F71L . . . CDCP2 200008 broad.mit.edu 36 1 54379541 54379541 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201546 exon3 c.G581T p.G194V . . . CYB5RL 606495 broad.mit.edu 36 1 54417506 54417506 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001031672 exon7 c.C648T p.V216V . . . C1orf175 374977 broad.mit.edu 36 1 54891894 54891894 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039464 exon3 c.C707A p.S236Y . . . C1orf175 374977 broad.mit.edu 36 1 54944733 54944733 + Missense_Mutation SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039464 exon22 c.G3602C p.S1201T . . . C1orf177 163747 broad.mit.edu 36 1 55050336 55050336 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001110533 exon6 c.C648A p.F216L . . . C1orf177 163747 broad.mit.edu 36 1 55052172 55052172 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001110533 exon7 c.G860A p.R287Q . . . USP24 23358 broad.mit.edu 36 1 55359014 55359014 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015306 exon38 c.C4351T p.R1451C . . . PRKAA2 5563 broad.mit.edu 36 1 56930717 56930717 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006252 exon4 c.G429A p.E143E . . . PRKAA2 5563 broad.mit.edu 36 1 56942663 56942663 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006252 exon7 c.G1220A p.R407Q . . . PRKAA2 5563 broad.mit.edu 36 1 56944374 56944374 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006252 exon8 c.C1315T p.R439C . . . C1orf168 199920 broad.mit.edu 36 1 57031019 57031019 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004303 exon2 c.C55A p.L19I . . . C8A 731 broad.mit.edu 36 1 57119850 57119850 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000562 exon5 c.G609T p.E203D . . . C8B 732 broad.mit.edu 36 1 57171643 57171643 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000066 exon10 c.C1505T p.S502F . . . DAB1 1600 broad.mit.edu 36 1 57253169 57253169 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021080 exon14 c.T1419G p.T473T . . . NPHP4 261734 broad.mit.edu 36 1 5857679 5857679 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015102 exon21 c.G2886A p.T962T . . . OMA1 115209 broad.mit.edu 36 1 58772582 58772582 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145243 exon4 c.G739T p.E247X . . . NPHP4 261734 broad.mit.edu 36 1 5887415 5887415 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015102 exon16 c.G1992T p.K664N . . . NPHP4 261734 broad.mit.edu 36 1 5888070 5888070 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015102 exon15 c.G1824T p.E608D . . . MYSM1 114803 broad.mit.edu 36 1 58915198 58915198 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001085487 exon9 c.A1378C p.N460H . . . MYSM1 114803 broad.mit.edu 36 1 58938300 58938300 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001085487 exon1 c.G13T p.E5X . . . C1orf87 127795 broad.mit.edu 36 1 60228985 60228985 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152377 exon12 c.C1589T p.S530L . . . C1orf87 127795 broad.mit.edu 36 1 60239399 60239399 + Missense_Mutation SNP C A A rs61742748 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152377 exon10 c.G1210T p.A404S . . . CHD5 26038 broad.mit.edu 36 1 6114290 6114290 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015557 exon21 c.G3250A p.D1084N . . . NFIA 4774 broad.mit.edu 36 1 61326728 61326728 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145512 exon3 c.G482T p.R161I . . . CHD5 26038 broad.mit.edu 36 1 6135095 6135095 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015557 exon6 c.C834T p.F278F . . . RNF207 388591 broad.mit.edu 36 1 6192876 6192876 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207396 exon9 c.C807T p.Y269Y . . . TM2D1 83941 broad.mit.edu 36 1 61947595 61947595 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032027 exon3 c.G341T p.R114L . . . INADL 10207 broad.mit.edu 36 1 62152910 62152910 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176877 exon26 c.G3556T p.E1186X . . . INADL 10207 broad.mit.edu 36 1 62354876 62354876 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_176877 exon36 c.C4740A p.I1580I . . . L1TD1 54596 broad.mit.edu 36 1 62444993 62444993 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019079 exon3 c.G105T p.K35N . . . L1TD1 54596 broad.mit.edu 36 1 62449048 62449048 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019079 exon4 c.G2014T p.E672X . . . USP1 7398 broad.mit.edu 36 1 62683588 62683588 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017416 exon6 c.G1149A p.G383G . . . DOCK7 85440 broad.mit.edu 36 1 62695913 62695913 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033407 exon48 c.G6171T p.K2057N . . . DOCK7 85440 broad.mit.edu 36 1 62714021 62714021 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033407 exon45 c.C5813T p.T1938M . . . DOCK7 85440 broad.mit.edu 36 1 62732650 62732650 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033407 exon39 c.C5008T p.R1670X . . . DOCK7 85440 broad.mit.edu 36 1 62751846 62751846 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033407 exon32 c.G4046A p.R1349Q . . . DOCK7 85440 broad.mit.edu 36 1 62791011 62791011 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033407 exon22 c.C2746T p.R916X . . . DOCK7 85440 broad.mit.edu 36 1 62797463 62797463 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033407 exon20 c.A2216C p.K739T . . . ANGPTL3 27329 broad.mit.edu 36 1 62840602 62840602 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014495 exon5 c.G894A p.T298T . . . ANGPTL3 27329 broad.mit.edu 36 1 62842291 62842291 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014495 exon6 c.G995A p.R332Q . . . DOCK7 85440 broad.mit.edu 36 1 62871813 62871813 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033407 exon10 c.G1060T p.D354Y . . . ATG4C 84938 broad.mit.edu 36 1 63057295 63057295 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178221 exon5 c.A426C p.E142D . . . ITGB3BP 23421 broad.mit.edu 36 1 63692192 63692192 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014288 exon7 c.G469T p.G157X . . . ITGB3BP 23421 broad.mit.edu 36 1 63693199 63693199 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014288 exon5 c.A283G p.K95E . . . ROR1 4919 broad.mit.edu 36 1 64288136 64288136 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005012 exon3 c.C349T p.R117W . . . ROR1 4919 broad.mit.edu 36 1 64417043 64417043 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005012 exon9 c.A2731C p.K911Q . . . CACHD1 57685 broad.mit.edu 36 1 64909869 64909869 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020925 exon17 c.A2269G p.M757V . . . CACHD1 57685 broad.mit.edu 36 1 64929597 64929597 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020925 exon27 c.A3437G p.Y1146C . . . JAK1 3716 broad.mit.edu 36 1 65093847 65093847 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002227 exon11 c.G1581T p.K527N . . . TAS1R1 80835 broad.mit.edu 36 1 6559246 6559246 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177540 exon3 c.A683C p.K228T . . . LEPR 3953 broad.mit.edu 36 1 65808993 65808993 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003679 exon4 c.G290T p.R97I . . . LEPR 3953 broad.mit.edu 36 1 65874841 65874841 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002303 exon20 c.C3053A p.S1018Y . . . LEPR 3953 broad.mit.edu 36 1 65875019 65875019 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002303 exon20 c.C3231A p.I1077I . . . PDE4B 5142 broad.mit.edu 36 1 66231262 66231262 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037340 exon1 c.G85A p.E29K . . . DNAJC11 55735 broad.mit.edu 36 1 6635495 6635495 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018198 exon6 c.C611T p.S204L . . . PDE4B 5142 broad.mit.edu 36 1 66610693 66610693 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002600 exon17 c.A1955G p.Y652C . . . SGIP1 84251 broad.mit.edu 36 1 66972077 66972077 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032291 exon21 c.A1957G p.M653V . . . WDR78 79819 broad.mit.edu 36 1 67078878 67078878 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207014 exon9 c.A1356G p.E452E . . . WDR78 79819 broad.mit.edu 36 1 67131506 67131506 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207014 exon3 c.T524G p.F175C . . . MIER1 57708 broad.mit.edu 36 1 67223091 67223091 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001146110 exon15 c.G1510T p.E504X . . . SLC35D1 23169 broad.mit.edu 36 1 67292245 67292245 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015139 exon1 c.G40T p.G14X . . . C1orf141 400757 broad.mit.edu 36 1 67353700 67353700 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013674 exon4 c.A269C p.K90T . . . C1orf141 400757 broad.mit.edu 36 1 67364064 67364064 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013674 exon3 c.G192T p.K64N . . . SERBP1 26135 broad.mit.edu 36 1 67658454 67658454 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018067 exon6 c.G822T p.E274D . . . SERBP1 26135 broad.mit.edu 36 1 67664450 67664450 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018067 exon2 c.G420A p.K140K . . . RPE65 6121 broad.mit.edu 36 1 68676566 68676566 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000329 exon10 c.C1020A p.Y340X . . . RPE65 6121 broad.mit.edu 36 1 68682927 68682927 + Nonsense_Mutation SNP G A A rs61752877 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000329 exon5 c.C370T p.R124X . . . DEPDC1 55635 broad.mit.edu 36 1 68717509 68717509 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001114120 exon10 c.C2018A p.S673Y . . . LRRC7 57554 broad.mit.edu 36 1 69998527 69998527 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020794 exon1 c.C52T p.R18X . . . LRRC7 57554 broad.mit.edu 36 1 70276922 70276922 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020794 exon19 c.C2713A p.L905I . . . LRRC7 57554 broad.mit.edu 36 1 70278059 70278059 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020794 exon19 c.G3850T p.D1284Y . . . LRRC7 57554 broad.mit.edu 36 1 70314397 70314397 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020794 exon22 c.G4166A p.R1389H . . . LRRC40 55631 broad.mit.edu 36 1 70390780 70390780 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017768 exon12 c.G1363A p.D455N . . . LRRC40 55631 broad.mit.edu 36 1 70411750 70411750 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017768 exon9 c.G1097A p.R366Q . . . LRRC40 55631 broad.mit.edu 36 1 70414244 70414244 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017768 exon7 c.G814A p.V272I . . . HHLA3 11147 broad.mit.edu 36 1 70593368 70593368 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001036645 exon1 c.T146G p.L49R . . . CTH 1491 broad.mit.edu 36 1 70673429 70673429 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153742 exon9 c.G901A p.E301K . . . PTGER3 5733 broad.mit.edu 36 1 71250656 71250656 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198715 exon2 c.C997A p.R333S . . . LRRIQ3 127255 broad.mit.edu 36 1 74279510 74279510 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001105659 exon7 c.T1693G p.L565V . . . LRRIQ3 127255 broad.mit.edu 36 1 74420953 74420953 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105659 exon3 c.C430A p.L144I . . . FPGT 8790 broad.mit.edu 36 1 74444033 74444033 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199328 exon5 c.G952T p.D318Y . . . TNNI3K 51086 broad.mit.edu 36 1 74569767 74569767 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199327 exon8 c.G793T p.D265Y . . . TNNI3K 51086 broad.mit.edu 36 1 74581159 74581159 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199327 exon10 c.C1031A p.S344Y . . . TNNI3K 51086 broad.mit.edu 36 1 74606217 74606217 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199327 exon15 c.G1605T p.K535N . . . TNNI3K 51086 broad.mit.edu 36 1 74608651 74608651 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199327 exon19 c.C2062T p.R688C . . . C1orf173 127254 broad.mit.edu 36 1 74809449 74809449 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002912 exon14 c.G4533A p.Q1511Q . . . C1orf173 127254 broad.mit.edu 36 1 74827969 74827969 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002912 exon12 c.C2110T p.L704F . . . C1orf173 127254 broad.mit.edu 36 1 74885028 74885028 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002912 exon3 c.T154C p.Y52H . . . CRYZ 1429 broad.mit.edu 36 1 74957639 74957639 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001889 exon4 c.T270G p.G90G . . . SLC44A5 204962 broad.mit.edu 36 1 75456214 75456214 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152697 exon18 c.G1549T p.A517S . . . SLC44A5 204962 broad.mit.edu 36 1 75457608 75457608 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152697 exon16 c.G1188A p.A396A . . . ACADM 34 broad.mit.edu 36 1 75971188 75971188 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000016 exon4 c.G279T p.E93D . . . ACADM 34 broad.mit.edu 36 1 75999494 75999494 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000016 exon11 c.C1045T p.R349X . . . RABGGTB 5876 broad.mit.edu 36 1 76030475 76030475 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004582 exon7 c.C601A p.L201M . . . ST6GALNAC3 256435 broad.mit.edu 36 1 76650444 76650444 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152996 exon3 c.G377A p.R126Q . . . CAMTA1 23261 broad.mit.edu 36 1 7727625 7727625 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015215 exon17 c.T4326G p.S1442R . . . ST6GALNAC5 81849 broad.mit.edu 36 1 77301476 77301476 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030965 exon5 c.C1008A p.F336L . . . PIGK 10026 broad.mit.edu 36 1 77399928 77399928 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005482 exon7 c.G641A p.R214Q . . . AK5 26289 broad.mit.edu 36 1 77532095 77532095 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012093 exon3 c.C199T p.R67W . . . VAMP3 9341 broad.mit.edu 36 1 7756124 7756124 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004781 exon2 c.G38A p.R13Q . . . ZZZ3 26009 broad.mit.edu 36 1 77870505 77870505 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015534 exon5 c.C1123T p.R375C . . . USP33 23032 broad.mit.edu 36 1 77954102 77954102 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015017 exon19 c.A2051C p.N684T . . . USP33 23032 broad.mit.edu 36 1 77979994 77979994 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015017 exon3 c.A70G p.K24E . . . FAM73A 374986 broad.mit.edu 36 1 78097312 78097312 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198549 exon9 c.T1098G p.I366M . . . NEXN 91624 broad.mit.edu 36 1 78171632 78171632 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_144573 exon10 c.T1131A p.N377K . . . FUBP1 8880 broad.mit.edu 36 1 78205916 78205916 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003902 exon4 c.G273A p.P91P . . . GIPC2 54810 broad.mit.edu 36 1 78319049 78319049 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017655 exon2 c.G343A p.E115K . . . GIPC2 54810 broad.mit.edu 36 1 78357703 78357703 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017655 exon4 c.G646T p.E216X . . . IFI44L 10964 broad.mit.edu 36 1 78875394 78875394 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006820 exon6 c.C966A p.V322V . . . IFI44 10561 broad.mit.edu 36 1 78888759 78888759 + Silent SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006417 exon2 c.A291T p.P97P . . . IFI44 10561 broad.mit.edu 36 1 78888922 78888922 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006417 exon2 c.G454A p.E152K . . . TNFRSF9 3604 broad.mit.edu 36 1 7915834 7915834 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001561 exon8 c.G654T p.K218N . . . ELTD1 64123 broad.mit.edu 36 1 79165322 79165322 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022159 exon8 c.C920A p.P307H . . . ELTD1 64123 broad.mit.edu 36 1 79176114 79176114 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022159 exon6 c.G726T p.K242N . . . LPHN2 23266 broad.mit.edu 36 1 82181378 82181378 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012302 exon5 c.C535T p.R179C . . . LPHN2 23266 broad.mit.edu 36 1 82218185 82218185 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012302 exon16 c.G3015A p.K1005K . . . LPHN2 23266 broad.mit.edu 36 1 82229274 82229274 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012302 exon20 c.C4069A p.L1357I . . . SLC45A1 50651 broad.mit.edu 36 1 8313498 8313498 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080397 exon4 c.G1358T p.R453I . . . RPF1 80135 broad.mit.edu 36 1 84717601 84717601 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_025065 exon1 c.A49C p.K17Q . . . RPF1 80135 broad.mit.edu 36 1 84733712 84733712 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025065 exon6 c.C685T p.R229C . . . SSX2IP 117178 broad.mit.edu 36 1 84885808 84885808 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001166295 exon13 c.C1660A p.Q554K . . . WDR63 126820 broad.mit.edu 36 1 85328432 85328432 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145172 exon8 c.C786A p.F262L . . . SYDE2 84144 broad.mit.edu 36 1 85421008 85421008 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032184 exon3 c.A1905G p.K635K . . . SYDE2 84144 broad.mit.edu 36 1 85428592 85428592 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032184 exon2 c.G1177A p.D393N . . . SYDE2 84144 broad.mit.edu 36 1 85428911 85428911 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032184 exon2 c.G858T p.K286N . . . C1orf52 148423 broad.mit.edu 36 1 85490935 85490935 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198077 exon3 c.G514T p.V172L . . . ZNHIT6 54680 broad.mit.edu 36 1 85896232 85896232 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001170670 exon10 c.C1141A p.L381I . . . ZNHIT6 54680 broad.mit.edu 36 1 85944577 85944577 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170670 exon4 c.C655T p.R219X . . . ZNHIT6 54680 broad.mit.edu 36 1 85946036 85946036 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170670 exon2 c.G403T p.E135X . . . ODF2L 57489 broad.mit.edu 36 1 86592869 86592869 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020729 exon16 c.G1651A p.E551K . . . ODF2L 57489 broad.mit.edu 36 1 86597147 86597147 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020729 exon12 c.G1183T p.E395X . . . ODF2L 57489 broad.mit.edu 36 1 86620524 86620524 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020729 exon7 c.G613T p.E205X . . . ODF2L 57489 broad.mit.edu 36 1 86623848 86623848 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020729 exon3 c.A127G p.I43V . . . ODF2L 57489 broad.mit.edu 36 1 86625262 86625262 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020729 exon2 c.G37T p.E13X . . . CLCA2 9635 broad.mit.edu 36 1 86677237 86677237 + Missense_Mutation SNP G A A rs55906076 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006536 exon7 c.G1063A p.D355N . . . CLCA2 9635 broad.mit.edu 36 1 86693675 86693675 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006536 exon14 c.G2709T p.L903F . . . CLCA1 1179 broad.mit.edu 36 1 86736867 86736867 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001285 exon13 c.G2138A p.R713K . . . CLCA4 22802 broad.mit.edu 36 1 86813655 86813655 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012128 exon11 c.C1736A p.T579N . . . SH3GLB1 51100 broad.mit.edu 36 1 86960894 86960894 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016009 exon4 c.T427G p.F143V . . . NOC2L 26155 broad.mit.edu 36 1 882169 882169 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015658 exon4 c.G454A p.A152T . . . PKN2 5586 broad.mit.edu 36 1 89009721 89009721 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006256 exon5 c.C652T p.R218W . . . PKN2 5586 broad.mit.edu 36 1 89010017 89010017 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006256 exon6 c.G852T p.K284N . . . CCBL2 56267 broad.mit.edu 36 1 89221106 89221106 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019610 exon2 c.G992A p.R331Q . . . GBP3 2635 broad.mit.edu 36 1 89252527 89252527 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018284 exon5 c.G452A p.R151Q . . . GBP7 388646 broad.mit.edu 36 1 89370608 89370608 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207398 exon11 c.C1729T p.R577X . . . GBP7 388646 broad.mit.edu 36 1 89403023 89403023 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207398 exon3 c.G297T p.E99D . . . GBP7 388646 broad.mit.edu 36 1 89410069 89410069 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207398 exon2 c.C138T p.L46L . . . GBP4 115361 broad.mit.edu 36 1 89429576 89429576 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052941 exon6 c.C872T p.A291V . . . GBP5 115362 broad.mit.edu 36 1 89504821 89504821 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134486 exon6 c.C664A p.L222M . . . LRRC8C 84230 broad.mit.edu 36 1 89952320 89952320 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032270 exon3 c.C1603A p.L535I . . . SLC2A7 155184 broad.mit.edu 36 1 9005682 9005682 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207420 exon3 c.G193A p.A65T . . . LRRC8D 55144 broad.mit.edu 36 1 90171870 90171870 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001134479 exon3 c.G655A p.E219K . . . LRRC8D 55144 broad.mit.edu 36 1 90173369 90173369 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001134479 exon3 c.C2154T p.L718L . . . SLC2A5 6518 broad.mit.edu 36 1 9020307 9020307 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003039 exon12 c.G1431T p.K477N . . . ZNF326 284695 broad.mit.edu 36 1 90256895 90256895 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182976 exon9 c.G1138T p.E380X . . . ZNF326 284695 broad.mit.edu 36 1 90265568 90265568 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182976 exon12 c.A1469C p.E490A . . . ZNF326 284695 broad.mit.edu 36 1 90265657 90265657 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182976 exon12 c.G1558T p.E520X . . . ZNF326 284695 broad.mit.edu 36 1 90265794 90265794 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182976 exon12 c.G1695T p.E565D . . . ZNF644 84146 broad.mit.edu 36 1 91175771 91175771 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201269 exon4 c.G3547T p.E1183X . . . ZNF644 84146 broad.mit.edu 36 1 91176876 91176876 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201269 exon3 c.G2623T p.E875X . . . ZNF644 84146 broad.mit.edu 36 1 91177084 91177084 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201269 exon3 c.T2415C p.R805R . . . ZNF644 84146 broad.mit.edu 36 1 91178153 91178153 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_201269 exon3 c.C1346A p.A449D . . . HFM1 164045 broad.mit.edu 36 1 91504199 91504199 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001017975 exon36 c.G3937T p.E1313X . . . HFM1 164045 broad.mit.edu 36 1 91557498 91557498 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001017975 exon24 c.G2620A p.D874N . . . HFM1 164045 broad.mit.edu 36 1 91617252 91617252 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017975 exon9 c.G1114T p.D372Y . . . HFM1 164045 broad.mit.edu 36 1 91639203 91639203 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017975 exon2 c.T25C p.F9L . . . CDC7 8317 broad.mit.edu 36 1 91749939 91749939 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003503 exon6 c.C443A p.S148Y . . . TGFBR3 7049 broad.mit.edu 36 1 91960115 91960115 + Missense_Mutation SNP G A A rs41305630 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195683 exon8 c.C1060T p.R354W . . . TGFBR3 7049 broad.mit.edu 36 1 91965835 91965835 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195683 exon7 c.C854A p.S285Y . . . TGFBR3 7049 broad.mit.edu 36 1 91968003 91968003 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195683 exon6 c.G684T p.Q228H . . . BRDT 676 broad.mit.edu 36 1 92206366 92206366 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207189 exon4 c.G406T p.E136X . . . GLMN 11146 broad.mit.edu 36 1 92529609 92529609 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053274 exon4 c.A239G p.D80G . . . EVI5 7813 broad.mit.edu 36 1 92931956 92931956 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005665 exon9 c.A1220C p.K407T . . . RPL5 6125 broad.mit.edu 36 1 93078764 93078764 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000969 exon7 c.G774T p.K258N . . . FAM69A 388650 broad.mit.edu 36 1 93085336 93085336 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001006605 exon4 c.C466A p.L156I . . . MTF2 22823 broad.mit.edu 36 1 93348428 93348428 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007358 exon2 c.G59A p.R20Q . . . MTF2 22823 broad.mit.edu 36 1 93367439 93367439 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007358 exon11 c.G1006T p.E336X . . . MTF2 22823 broad.mit.edu 36 1 93371921 93371921 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007358 exon12 c.A1234C p.K412Q . . . TMED5 50999 broad.mit.edu 36 1 93394462 93394462 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167830 exon3 c.A454G p.K152E . . . CCDC18 343099 broad.mit.edu 36 1 93455897 93455897 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_206886 exon14 c.G2199T p.K733N . . . DNTTIP2 30836 broad.mit.edu 36 1 94115627 94115627 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014597 exon2 c.C452A p.S151Y . . . DNTTIP2 30836 broad.mit.edu 36 1 94115795 94115795 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014597 exon2 c.C284A p.S95Y . . . ABCA4 24 broad.mit.edu 36 1 94275327 94275327 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000350 exon25 c.C3775A p.L1259I . . . ABCA4 24 broad.mit.edu 36 1 94315977 94315977 + Nonsense_Mutation SNP C A A rs1800548 by-cluster TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000350 exon11 c.G1411T p.E471X . . . ABCA4 24 broad.mit.edu 36 1 94318627 94318627 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000350 exon8 c.G1094T p.R365I . . . ABCA4 24 broad.mit.edu 36 1 94337132 94337132 + Missense_Mutation SNP C T T rs61748535 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000350 exon6 c.G574A p.A192T . . . ARHGAP29 9411 broad.mit.edu 36 1 94418056 94418056 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004815 exon20 c.G2293T p.D765Y . . . ARHGAP29 9411 broad.mit.edu 36 1 94423185 94423185 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004815 exon18 c.G1940A p.R647Q . . . F3 2152 broad.mit.edu 36 1 94778486 94778486 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001993 exon2 c.A127G p.N43D . . . SLC44A3 126969 broad.mit.edu 36 1 95080251 95080251 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114106 exon8 c.G868A p.V290I . . . RWDD3 25950 broad.mit.edu 36 1 95482639 95482639 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001199682 exon2 c.A370C p.S124R . . . PTBP2 58155 broad.mit.edu 36 1 97007961 97007961 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021190 exon4 c.C230A p.A77D . . . DPYD 1806 broad.mit.edu 36 1 97317272 97317272 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000110 exon23 c.G2926T p.E976X . . . DPYD 1806 broad.mit.edu 36 1 97543488 97543488 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000110 exon18 c.C2214A p.V738V . . . DPYD 1806 broad.mit.edu 36 1 97753949 97753949 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000110 exon13 c.C1661T p.A554V . . . PALMD 54873 broad.mit.edu 36 1 99905837 99905837 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017734 exon3 c.G178T p.E60X . . . PALMD 54873 broad.mit.edu 36 1 99924839 99924839 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017734 exon4 c.G271T p.D91Y . . . FRRS1 391059 broad.mit.edu 36 1 99979069 99979069 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013660 exon6 c.G444T p.E148D . . . TRPC6 7225 broad.mit.edu 36 11 100828938 100828938 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004621 exon13 c.G2754T p.E918D . . . TRPC6 7225 broad.mit.edu 36 11 100829641 100829641 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004621 exon12 c.G2594A p.R865K . . . TRPC6 7225 broad.mit.edu 36 11 100849597 100849597 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004621 exon7 c.G1862A p.G621E . . . MUC6 4588 broad.mit.edu 36 11 1008764 1008764 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005961 exon31 c.C4037T p.S1346L . . . ANGPTL5 253935 broad.mit.edu 36 11 101267340 101267340 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178127 exon9 c.C1047A p.F349L . . . KIAA1377 57562 broad.mit.edu 36 11 101339058 101339058 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020802 exon6 c.C2082A p.I694I . . . KIAA1377 57562 broad.mit.edu 36 11 101357891 101357891 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020802 exon8 c.C3020A p.S1007Y . . . BIRC3 330 broad.mit.edu 36 11 101700470 101700470 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182962 exon3 c.G20T p.S7I . . . BIRC3 330 broad.mit.edu 36 11 101700965 101700965 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182962 exon3 c.G515T p.R172I . . . BIRC3 330 broad.mit.edu 36 11 101706960 101706960 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182962 exon7 c.G1102T p.E368X . . . BIRC2 329 broad.mit.edu 36 11 101753454 101753454 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001166 exon7 c.C1384T p.R462W . . . TMEM123 114908 broad.mit.edu 36 11 101777585 101777585 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052932 exon4 c.C497A p.T166N . . . MMP27 64066 broad.mit.edu 36 11 102067896 102067896 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022122 exon10 c.G1353T p.K451N . . . MMP8 4317 broad.mit.edu 36 11 102091342 102091342 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002424 exon7 c.C939T p.V313V . . . MMP10 4319 broad.mit.edu 36 11 102152237 102152237 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002425 exon6 c.C916A p.L306M . . . MMP10 4319 broad.mit.edu 36 11 102152342 102152342 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002425 exon6 c.G811T p.E271X . . . MMP1 4312 broad.mit.edu 36 11 102166425 102166425 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145938 exon10 c.A1140C p.K380N . . . MMP3 4314 broad.mit.edu 36 11 102214641 102214641 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002422 exon8 c.C1080A p.F360L . . . MMP13 4322 broad.mit.edu 36 11 102328078 102328078 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002427 exon5 c.C672T p.F224F . . . DYNC2H1 79659 broad.mit.edu 36 11 102489533 102489533 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon2 c.G253T p.V85L . . . DYNC2H1 79659 broad.mit.edu 36 11 102491154 102491154 + Nonsense_Mutation SNP G T T rs35318378 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon4 c.G541T p.E181X . . . DYNC2H1 79659 broad.mit.edu 36 11 102524503 102524503 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon20 c.G2893T p.E965X . . . DYNC2H1 79659 broad.mit.edu 36 11 102534681 102534681 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon27 c.G4193T p.R1398I . . . DYNC2H1 79659 broad.mit.edu 36 11 102546111 102546111 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon33 c.C5033A p.A1678D . . . DYNC2H1 79659 broad.mit.edu 36 11 102580873 102580873 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon52 c.G8424T p.M2808I . . . DYNC2H1 79659 broad.mit.edu 36 11 102598983 102598983 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon59 c.A9311G p.E3104G . . . DYNC2H1 79659 broad.mit.edu 36 11 102687837 102687837 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001377 exon79 c.G11514T p.K3838N . . . DDI1 414301 broad.mit.edu 36 11 103413889 103413889 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001711 exon1 c.G1129A p.D377N . . . CASP4 837 broad.mit.edu 36 11 104325700 104325700 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033306 exon5 c.G393A p.A131A . . . CASP4 837 broad.mit.edu 36 11 104330684 104330684 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033306 exon2 c.G94T p.A32S . . . CASP4 837 broad.mit.edu 36 11 104330817 104330817 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001225 exon2 c.G129T p.K43N . . . AMPD3 272 broad.mit.edu 36 11 10483891 10483891 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025389 exon15 c.C2188T p.R730X . . . RNF141 50862 broad.mit.edu 36 11 10493157 10493157 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016422 exon6 c.G575A p.R192H . . . GRIA4 2893 broad.mit.edu 36 11 104988272 104988272 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077244 exon3 c.C148T p.L50F . . . GRIA4 2893 broad.mit.edu 36 11 105300338 105300338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077243 exon12 c.G1480A p.A494T . . . GRIA4 2893 broad.mit.edu 36 11 105302691 105302691 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077243 exon13 c.G1862A p.R621Q . . . GRIA4 2893 broad.mit.edu 36 11 105309718 105309718 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077243 exon14 c.G2107T p.V703L . . . GRIA4 2893 broad.mit.edu 36 11 105355655 105355655 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000829 exon17 c.C2688A p.V896V . . . KBTBD3 143879 broad.mit.edu 36 11 105428967 105428967 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152433 exon3 c.T1659C p.I553I . . . KBTBD3 143879 broad.mit.edu 36 11 105429365 105429365 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152433 exon3 c.C1261A p.L421I . . . KBTBD3 143879 broad.mit.edu 36 11 105429560 105429560 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152433 exon3 c.C1066T p.R356X . . . AASDHPPT 60496 broad.mit.edu 36 11 105455529 105455529 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015423 exon2 c.G309A p.P103P . . . MRVI1 10335 broad.mit.edu 36 11 10604555 10604555 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100163 exon9 c.C629T p.T210I . . . GUCY1A2 2977 broad.mit.edu 36 11 106186391 106186391 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000855 exon5 c.G1230T p.M410I . . . GUCY1A2 2977 broad.mit.edu 36 11 106315719 106315719 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000855 exon4 c.G883T p.E295X . . . GUCY1A2 2977 broad.mit.edu 36 11 106316094 106316094 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000855 exon4 c.C508A p.Q170K . . . CWF19L2 143884 broad.mit.edu 36 11 106710843 106710843 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152434 exon16 c.C2413T p.L805F . . . CWF19L2 143884 broad.mit.edu 36 11 106768735 106768735 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152434 exon11 c.G1714A p.G572R . . . CWF19L2 143884 broad.mit.edu 36 11 106805156 106805156 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152434 exon8 c.G1012T p.D338Y . . . CWF19L2 143884 broad.mit.edu 36 11 106805258 106805258 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152434 exon8 c.G910T p.E304X . . . ELMOD1 55531 broad.mit.edu 36 11 107007529 107007529 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001130037 exon5 c.C206A p.S69Y . . . NPAT 4863 broad.mit.edu 36 11 107537485 107537485 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_002519 exon17 c.A3538C p.N1180H . . . NPAT 4863 broad.mit.edu 36 11 107548514 107548514 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002519 exon13 c.G2407A p.E803K . . . ATM 472 broad.mit.edu 36 11 107644532 107644532 + Missense_Mutation SNP C A A rs3218688 by-cluster,by-frequency,by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon18 c.C2824A p.L942I . . . ATM 472 broad.mit.edu 36 11 107656978 107656978 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon24 c.G3449T p.R1150I . . . ATM 472 broad.mit.edu 36 11 107658719 107658719 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon25 c.C3649A p.L1217M . . . ATM 472 broad.mit.edu 36 11 107665026 107665026 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000051 exon28 c.C4222A p.L1408I . . . ATM 472 broad.mit.edu 36 11 107665698 107665698 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon29 c.C4396T p.R1466X . . . ATM 472 broad.mit.edu 36 11 107668583 107668583 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon30 c.A4464G p.L1488L . . . ATM 472 broad.mit.edu 36 11 107677595 107677595 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon35 c.C5188T p.R1730X . . . ATM 472 broad.mit.edu 36 11 107695982 107695982 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon44 c.C6439A p.L2147I . . . ATM 472 broad.mit.edu 36 11 107701425 107701425 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000051 exon46 c.C6751A p.L2251I . . . C11orf65 160140 broad.mit.edu 36 11 107759017 107759017 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152587 exon9 c.A883C p.N295H . . . EXPH5 23086 broad.mit.edu 36 11 107887845 107887845 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015065 exon6 c.G3599T p.R1200I . . . EXPH5 23086 broad.mit.edu 36 11 107890295 107890295 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015065 exon6 c.G1149T p.E383D . . . EXPH5 23086 broad.mit.edu 36 11 107904092 107904092 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015065 exon4 c.C473A p.P158H . . . DDX10 1662 broad.mit.edu 36 11 108049450 108049450 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004398 exon2 c.A233G p.K78R . . . DDX10 1662 broad.mit.edu 36 11 108064950 108064950 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004398 exon7 c.G926T p.R309I . . . DDX10 1662 broad.mit.edu 36 11 108099073 108099073 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004398 exon13 c.G1639T p.E547X . . . ZC3H12C 85463 broad.mit.edu 36 11 109540776 109540776 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033390 exon6 c.G1756A p.D586N . . . ZC3H12C 85463 broad.mit.edu 36 11 109541373 109541373 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033390 exon6 c.G2353A p.D785N . . . ARHGAP20 57569 broad.mit.edu 36 11 109955954 109955954 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020809 exon16 c.G2926T p.D976Y . . . ARHGAP20 57569 broad.mit.edu 36 11 109956475 109956475 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020809 exon16 c.C2405A p.S802Y . . . ARHGAP20 57569 broad.mit.edu 36 11 109956755 109956755 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020809 exon16 c.G2125A p.D709N . . . ARHGAP20 57569 broad.mit.edu 36 11 109968052 109968052 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020809 exon11 c.C1002A p.I334I . . . BTG4 54766 broad.mit.edu 36 11 110874618 110874618 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017589 exon2 c.G94T p.E32X . . . C11orf88 399949 broad.mit.edu 36 11 110890869 110890869 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100388 exon1 c.C150T p.S50S . . . C11orf88 399949 broad.mit.edu 36 11 110892039 110892039 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100388 exon3 c.C333T p.L111L . . . SIK2 23235 broad.mit.edu 36 11 110996327 110996327 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015191 exon3 c.G307T p.E103X . . . SIK2 23235 broad.mit.edu 36 11 111076839 111076839 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015191 exon5 c.C498A p.F166L . . . FDXACB1 91893 broad.mit.edu 36 11 111251110 111251110 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_138378 exon5 c.A1621C p.S541R . . . HSPB2 3316 broad.mit.edu 36 11 111289476 111289476 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001541 exon2 c.G196A p.E66K . . . DIXDC1 85458 broad.mit.edu 36 11 111350171 111350171 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037954 exon4 c.C531A p.V177V . . . DIXDC1 85458 broad.mit.edu 36 11 111358383 111358383 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033425 exon3 c.G246T p.K82N . . . GALNTL4 374378 broad.mit.edu 36 11 11249345 11249345 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198516 exon11 c.C1746T p.F582F . . . NCAM1 4684 broad.mit.edu 36 11 112580339 112580339 + 5'UTR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076682 exon3 c.C250A p.L84I . . . NCAM1 4684 broad.mit.edu 36 11 112580436 112580436 + 5'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076682 exon3 c.C347T p.S116L . . . NCAM1 4684 broad.mit.edu 36 11 112607620 112607620 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076682 exon9 c.C1104T p.V368V . . . NCAM1 4684 broad.mit.edu 36 11 112608209 112608209 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076682 exon10 c.C1319T p.S440L . . . Unknown 0 broad.mit.edu 36 11 112616733 112616733 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076682 exon15 c.C1827T p.L609L . . . NCAM1 4684 broad.mit.edu 36 11 112646147 112646147 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000615 exon16 c.G2130A p.E710E . . . DRD2 1813 broad.mit.edu 36 11 112786733 112786733 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000795 exon8 c.G1258A p.A420T . . . DRD2 1813 broad.mit.edu 36 11 112788805 112788805 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000795 exon7 c.G821A p.R274Q . . . ZW10 9183 broad.mit.edu 36 11 113113536 113113536 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004724 exon14 c.T1984G p.S662A . . . CLDN25 644672 broad.mit.edu 36 11 113155743 113155743 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001101389 exon1 c.C16A p.R6S . . . USP28 57646 broad.mit.edu 36 11 113175269 113175269 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020886 exon25 c.C3137A p.P1046H USP28,kidney,NS,Substitution - Missense,-1 . . HTR3B 9177 broad.mit.edu 36 11 113307695 113307695 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006028 exon4 c.G264T p.W88C . . . GALNTL4 374378 broad.mit.edu 36 11 11355472 11355472 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198516 exon5 c.G810T p.E270D . . . ZBTB16 7704 broad.mit.edu 36 11 113562929 113562929 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006006 exon4 c.C1412T p.S471L . . . ZBTB16 7704 broad.mit.edu 36 11 113618166 113618166 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006006 exon5 c.G1521A p.Q507Q . . . NNMT 4837 broad.mit.edu 36 11 113672552 113672552 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006169 exon1 c.G64T p.E22X . . . NNMT 4837 broad.mit.edu 36 11 113688311 113688311 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006169 exon3 c.G697A p.E233K . . . FAM55D 54827 broad.mit.edu 36 11 113947114 113947114 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017678 exon6 c.G539T p.R180I . . . FAM55D 54827 broad.mit.edu 36 11 113947182 113947182 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017678 exon6 c.C471A p.P157P . . . FAM55D 54827 broad.mit.edu 36 11 113947354 113947354 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017678 exon6 c.C299A p.A100D . . . CADM1 23705 broad.mit.edu 36 11 114554644 114554644 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014333 exon9 c.C1140T p.V380V . . . ZNF259 8882 broad.mit.edu 36 11 116161783 116161783 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003904 exon5 c.G521T p.R174I . . . SIK3 23387 broad.mit.edu 36 11 116233906 116233906 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025164 exon20 c.C3167A p.S1056X . . . TAGLN 6876 broad.mit.edu 36 11 116579009 116579009 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003186 exon2 c.G70A p.E24K . . . RNF214 257160 broad.mit.edu 36 11 116656121 116656121 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077239 exon8 c.G1081T p.E361X . . . CEP164 22897 broad.mit.edu 36 11 116785869 116785869 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014956 exon30 c.G4074T p.E1358D . . . TMPRSS13 84000 broad.mit.edu 36 11 117278188 117278188 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077263 exon13 c.C1680T p.S560S . . . TMPRSS4 56649 broad.mit.edu 36 11 117483781 117483781 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173551 exon6 c.C517T p.R173C . . . AMICA1 120425 broad.mit.edu 36 11 117579575 117579575 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153206 exon5 c.C520T p.R174C . . . MPZL2 10205 broad.mit.edu 36 11 117640067 117640067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144765 exon1 c.G12T p.K4N . . . UBE4A 9354 broad.mit.edu 36 11 117744618 117744618 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004788 exon3 c.G184A p.D62N . . . ATP5L 10632 broad.mit.edu 36 11 117782877 117782877 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006476 exon2 c.C68T p.S23L . . . MLL 4297 broad.mit.edu 36 11 117848425 117848425 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005933 exon3 c.G1341A p.P447P . . . MLL 4297 broad.mit.edu 36 11 117849291 117849291 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005933 exon3 c.G2207T p.R736M . . . MLL 4297 broad.mit.edu 36 11 117864620 117864620 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005933 exon11 c.G4414T p.E1472X . . . MLL 4297 broad.mit.edu 36 11 117878564 117878564 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005933 exon27 c.C6738A p.V2246V . . . MLL 4297 broad.mit.edu 36 11 117881110 117881110 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005933 exon27 c.C9284A p.P3095Q . . . MLL 4297 broad.mit.edu 36 11 117881953 117881953 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005933 exon27 c.G10127A p.G3376D . . . ARCN1 372 broad.mit.edu 36 11 117957244 117957244 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001655 exon2 c.G77A p.R26Q . . . BCL9L 283149 broad.mit.edu 36 11 118278273 118278273 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182557 exon6 c.G1389T p.K463N . . . FOXR1 283150 broad.mit.edu 36 11 118355458 118355458 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181721 exon4 c.C481T p.R161W . . . CBL 867 broad.mit.edu 36 11 118608601 118608601 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005188 exon2 c.G429T p.E143D . . . CBL 867 broad.mit.edu 36 11 118647657 118647657 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005188 exon3 c.G446A p.R149Q . . . CBL 867 broad.mit.edu 36 11 118674389 118674389 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005188 exon15 c.G2363A p.R788Q . . . PVRL1 5818 broad.mit.edu 36 11 119051217 119051217 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002855 exon5 c.C865T p.L289F . . . USP47 55031 broad.mit.edu 36 11 11914543 11914543 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017944 exon16 c.C1783A p.L595I . . . USP47 55031 broad.mit.edu 36 11 11926166 11926166 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017944 exon20 c.C2986T p.R996X . . . USP47 55031 broad.mit.edu 36 11 11933272 11933272 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017944 exon26 c.C3674T p.A1225V . . . TRIM29 23650 broad.mit.edu 36 11 119491286 119491286 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012101 exon8 c.G1674T p.Q558H . . . POU2F3 25833 broad.mit.edu 36 11 119683493 119683493 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014352 exon9 c.G865A p.E289K . . . ARHGEF12 23365 broad.mit.edu 36 11 119824199 119824199 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198665 exon19 c.G1612T p.V538L . . . ARHGEF12 23365 broad.mit.edu 36 11 119835111 119835111 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198665 exon25 c.G2342T p.R781I . . . GRIK4 2900 broad.mit.edu 36 11 120195704 120195704 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014619 exon4 c.T376C p.F126L . . . GRIK4 2900 broad.mit.edu 36 11 120328809 120328809 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014619 exon13 c.A1626C p.P542P . . . TBCEL 219899 broad.mit.edu 36 11 120434296 120434296 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152715 exon6 c.A745C p.N249H . . . TECTA 7007 broad.mit.edu 36 11 120485259 120485259 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005422 exon3 c.G328A p.E110K . . . TECTA 7007 broad.mit.edu 36 11 120489082 120489082 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005422 exon4 c.C578T p.A193V . . . TECTA 7007 broad.mit.edu 36 11 120505683 120505683 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005422 exon9 c.C2494A p.L832I . . . TECTA 7007 broad.mit.edu 36 11 120505886 120505886 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005422 exon9 c.C2697A p.D899E . . . TECTA 7007 broad.mit.edu 36 11 120513575 120513575 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005422 exon10 c.C3177A p.I1059I . . . SC5DL 6309 broad.mit.edu 36 11 120680293 120680293 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006918 exon3 c.G224A p.R75Q . . . BLID 414899 broad.mit.edu 36 11 121491839 121491839 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001001786 exon1 c.T2G p.M1R . . . MUC5B 727897 broad.mit.edu 36 11 1222021 1222021 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002458 exon31 c.G7335A p.T2445T . . . C11orf63 79864 broad.mit.edu 36 11 122261911 122261911 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024806 exon2 c.A144C p.E48D . . . C11orf63 79864 broad.mit.edu 36 11 122280302 122280302 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024806 exon3 c.G804A p.P268P . . . BSX 390259 broad.mit.edu 36 11 122353802 122353802 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098169 exon3 c.C467T p.T156M . . . HSPA8 3312 broad.mit.edu 36 11 122435576 122435576 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153201 exon5 c.G935C p.G312A . . . MICALCL 84953 broad.mit.edu 36 11 12272857 12272857 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032867 exon3 c.G1303T p.D435Y . . . MUC5B 727897 broad.mit.edu 36 11 1228413 1228413 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002458 exon31 c.G13727A p.G4576D . . . GRAMD1B 57476 broad.mit.edu 36 11 122986177 122986177 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020716 exon13 c.G1411A p.D471N . . . GRAMD1B 57476 broad.mit.edu 36 11 122988742 122988742 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020716 exon14 c.G1554T p.K518N . . . SCN3B 55800 broad.mit.edu 36 11 123029708 123029708 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018400 exon1 c.C12A p.F4L . . . ZNF202 7753 broad.mit.edu 36 11 123106773 123106773 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003455 exon4 c.C34A p.L12I . . . OR6X1 390260 broad.mit.edu 36 11 123129882 123129882 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005188 exon1 c.C555T p.A185A . . . OR6M1 390261 broad.mit.edu 36 11 123181895 123181895 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001005325 exon1 c.T373C p.C125R . . . TMEM225 338661 broad.mit.edu 36 11 123260475 123260475 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013743 exon2 c.A260C p.K87T . . . OR4D5 219875 broad.mit.edu 36 11 123316428 123316428 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001001965 exon1 c.A895G p.K299E . . . OR10S1 219873 broad.mit.edu 36 11 123353564 123353564 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004474 exon1 c.G45T p.E15D . . . OR10G8 219869 broad.mit.edu 36 11 123405726 123405726 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001004464 exon1 c.A187G p.N63D . . . VWA5A 4013 broad.mit.edu 36 11 123499679 123499679 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014622 exon9 c.G1122T p.Q374H . . . VWA5A 4013 broad.mit.edu 36 11 123512159 123512159 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014622 exon12 c.C1473A p.I491I . . . VWA5A 4013 broad.mit.edu 36 11 123521850 123521850 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014622 exon18 c.C2349A p.I783I . . . Unknown 0 broad.mit.edu 36 11 123625759 123625759 + IGR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001002905 exon1 c.C127A p.L43M . . . Unknown 0 broad.mit.edu 36 11 123640456 123640456 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005198 exon1 c.C524T p.A175V . . . Unknown 0 broad.mit.edu 36 11 123640527 123640527 + IGR SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005198 exon1 c.T595C p.F199L . . . OR8B3 390271 broad.mit.edu 36 11 123771841 123771841 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005467 exon1 c.A617C p.N206T . . . OR8B8 26493 broad.mit.edu 36 11 123816090 123816090 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012378 exon1 c.C102A p.F34L . . . SIAE 54414 broad.mit.edu 36 11 124013731 124013731 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170601 exon9 c.G1237T p.E413X . . . VSIG2 23584 broad.mit.edu 36 11 124126019 124126019 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014312 exon3 c.C228A p.Y76X . . . ROBO3 64221 broad.mit.edu 36 11 124247487 124247487 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022370 exon8 c.G1159A p.V387I . . . ROBO3 64221 broad.mit.edu 36 11 124250410 124250410 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022370 exon14 c.G2267A p.S756N . . . ROBO4 54538 broad.mit.edu 36 11 124269401 124269401 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019055 exon8 c.C1224T p.I408I . . . SLC37A2 219855 broad.mit.edu 36 11 124458965 124458965 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145290 exon11 c.G1021A p.D341N . . . PKNOX2 63876 broad.mit.edu 36 11 124786926 124786926 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022062 exon10 c.G891A p.K297K . . . PKNOX2 63876 broad.mit.edu 36 11 124806384 124806384 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022062 exon13 c.G1305T p.E435D . . . FEZ1 9638 broad.mit.edu 36 11 124864751 124864751 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022549 exon2 c.G133A p.E45K . . . EI24 9538 broad.mit.edu 36 11 124953282 124953282 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004879 exon6 c.C360A p.F120L . . . PATE2 399967 broad.mit.edu 36 11 125153106 125153106 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212555 exon3 c.G78A p.A26A . . . PUS3 83480 broad.mit.edu 36 11 125270355 125270355 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031307 exon3 c.G918T p.E306D . . . HYLS1 219844 broad.mit.edu 36 11 125275178 125275178 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145014 exon4 c.G705T p.K235N . . . DDX25 29118 broad.mit.edu 36 11 125292131 125292131 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013264 exon9 c.C813T p.S271S . . . CDON 50937 broad.mit.edu 36 11 125369447 125369447 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016952 exon14 c.C2592A p.I864I . . . FAM118B 79607 broad.mit.edu 36 11 125610170 125610170 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024556 exon3 c.G64A p.E22K . . . FAM118B 79607 broad.mit.edu 36 11 125631900 125631900 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024556 exon7 c.G925A p.D309N . . . ETS1 2113 broad.mit.edu 36 11 127897043 127897043 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005238 exon1 c.C57A p.V19V . . . FLI1 2313 broad.mit.edu 36 11 128185798 128185798 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001167681 exon9 c.G965T p.R322I . . . ARHGAP32 9743 broad.mit.edu 36 11 128347812 128347812 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014715 exon12 c.G2710A p.E904K . . . ARHGAP32 9743 broad.mit.edu 36 11 128349581 128349581 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014715 exon11 c.G1632A p.P544P . . . TMEM45B 120224 broad.mit.edu 36 11 129227732 129227732 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138788 exon2 c.G145A p.E49K . . . PRDM10 56980 broad.mit.edu 36 11 129277441 129277441 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020228 exon22 c.G3460A p.E1154K . . . PRDM10 56980 broad.mit.edu 36 11 129290102 129290102 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020228 exon18 c.C2560T p.R854X . . . ST14 6768 broad.mit.edu 36 11 129583571 129583571 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021978 exon17 c.G2051A p.R684H . . . ZBTB44 29068 broad.mit.edu 36 11 129635966 129635966 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014155 exon2 c.C1013A p.S338Y . . . ZBTB44 29068 broad.mit.edu 36 11 129636396 129636396 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014155 exon2 c.C583T p.P195S . . . ADAMTS15 170689 broad.mit.edu 36 11 129846408 129846408 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139055 exon7 c.G1998T p.K666N . . . SNX19 399979 broad.mit.edu 36 11 130289814 130289814 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014758 exon1 c.C1231A p.L411M . . . SNX19 399979 broad.mit.edu 36 11 130289961 130289961 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014758 exon1 c.C1084T p.R362X . . . OPCML 4978 broad.mit.edu 36 11 131811315 131811315 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012393 exon7 c.G791T p.R264M . . . SPATA19 219938 broad.mit.edu 36 11 133217612 133217612 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174927 exon5 c.C415T p.R139X . . . ARNTL 406 broad.mit.edu 36 11 13332445 13332445 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030272 exon4 c.G14T p.R5I . . . ARNTL 406 broad.mit.edu 36 11 13352249 13352249 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030273 exon14 c.G967T p.E323X . . . ARNTL 406 broad.mit.edu 36 11 13353815 13353815 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030273 exon15 c.C1123T p.R375X . . . ACAD8 27034 broad.mit.edu 36 11 133633697 133633697 + Missense_Mutation SNP G T T rs35423297 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014384 exon4 c.G459T p.E153D . . . GLB1L3 112937 broad.mit.edu 36 11 133689124 133689124 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080407 exon17 c.C1659A p.F553L . . . PTH 5741 broad.mit.edu 36 11 13470733 13470733 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000315 exon3 c.C143T p.S48L . . . SPON1 10418 broad.mit.edu 36 11 14053525 14053525 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006108 exon4 c.G537T p.K179N . . . RRAS2 22800 broad.mit.edu 36 11 14273941 14273941 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012250 exon2 c.G145T p.D49Y . . . COPB1 1315 broad.mit.edu 36 11 14457776 14457776 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016451 exon11 c.C1273T p.R425C . . . COPB1 1315 broad.mit.edu 36 11 14472355 14472355 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016451 exon3 c.C298A p.L100I . . . MOB2 81532 broad.mit.edu 36 11 1458288 1458288 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_053005 exon4 c.G183A p.T61T . . . CALCB 797 broad.mit.edu 36 11 15053190 15053190 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000728 exon3 c.C94A p.L32M . . . SOX6 55553 broad.mit.edu 36 11 16319181 16319181 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033326 exon2 c.C190A p.Q64K . . . PLEKHA7 144100 broad.mit.edu 36 11 16773139 16773139 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175058 exon18 c.G2412T p.E804D . . . PIK3C2A 5286 broad.mit.edu 36 11 17078035 17078035 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002645 exon25 c.G4066T p.D1356Y . . . PIK3C2A 5286 broad.mit.edu 36 11 17096775 17096775 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002645 exon17 c.T3028C p.L1010L . . . NUCB2 4925 broad.mit.edu 36 11 17308292 17308292 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005013 exon12 c.G1045T p.E349X . . . ABCC8 6833 broad.mit.edu 36 11 17371847 17371847 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000352 exon38 c.C4581T p.F1527F . . . USH1C 10083 broad.mit.edu 36 11 17487649 17487649 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153676 exon18 c.G1843T p.D615Y . . . USH1C 10083 broad.mit.edu 36 11 17488599 17488599 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153676 exon17 c.C1459A p.Q487K . . . USH1C 10083 broad.mit.edu 36 11 17499090 17499090 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153676 exon14 c.G1113T p.K371N . . . KCNC1 3746 broad.mit.edu 36 11 17750740 17750740 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004976 exon2 c.G1523A p.G508D . . . SERGEF 26297 broad.mit.edu 36 11 17971054 17971054 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012139 exon7 c.G685T p.D229Y . . . TPH1 7166 broad.mit.edu 36 11 18018811 18018811 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004179 exon1 c.G75T p.K25N . . . SAAL1 113174 broad.mit.edu 36 11 18061814 18061814 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138421 exon10 c.A1083C p.Q361H . . . MRGPRX3 117195 broad.mit.edu 36 11 18116058 18116058 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_054031 exon3 c.G733A p.D245N . . . SAA4 6291 broad.mit.edu 36 11 18214007 18214007 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006512 exon2 c.G43T p.G15X . . . SAA1 6288 broad.mit.edu 36 11 18245048 18245048 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000331 exon2 c.T38C p.V13A . . . HPS5 11234 broad.mit.edu 36 11 18274984 18274984 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181508 exon11 c.G1105T p.E369X . . . GTF2H1 2965 broad.mit.edu 36 11 18330526 18330526 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142307 exon12 c.G1217T p.S406I . . . LDHAL6A 160287 broad.mit.edu 36 11 18456907 18456907 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144972 exon7 c.A913C p.K305Q . . . UEVLD 55293 broad.mit.edu 36 11 18522782 18522782 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040697 exon9 c.G1024T p.E342X . . . SPTY2D1 144108 broad.mit.edu 36 11 18588013 18588013 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194285 exon6 c.C2029T p.R677X . . . SPTY2D1 144108 broad.mit.edu 36 11 18590569 18590569 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194285 exon4 c.G1754A p.R585Q . . . SPTY2D1 144108 broad.mit.edu 36 11 18593496 18593496 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194285 exon3 c.C901T p.R301C . . . IGSF22 283284 broad.mit.edu 36 11 18687610 18687610 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173588 exon18 c.C2898T p.I966I . . . IGSF22 283284 broad.mit.edu 36 11 18692464 18692464 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173588 exon13 c.G1734A p.E578E . . . MRGPRX1 259249 broad.mit.edu 36 11 18912626 18912626 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147199 exon1 c.C282A p.I94I . . . E2F8 79733 broad.mit.edu 36 11 19216247 19216247 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024680 exon3 c.C24A p.L8L . . . NAV2 89797 broad.mit.edu 36 11 19911808 19911808 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001111018 exon7 c.C1250A p.S417Y . . . RIC8A 60626 broad.mit.edu 36 11 199294 199294 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021932 exon2 c.T108G p.D36E . . . NAV2 89797 broad.mit.edu 36 11 20026912 20026912 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111018 exon15 c.C3773T p.S1258L . . . DBX1 120237 broad.mit.edu 36 11 20137356 20137356 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029865 exon2 c.C426T p.F142F . . . HTATIP2 10553 broad.mit.edu 36 11 20345302 20345302 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098520 exon3 c.G304T p.E102X . . . PRMT3 10196 broad.mit.edu 36 11 20404968 20404968 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005788 exon10 c.T974C p.V325A . . . SLC6A5 9152 broad.mit.edu 36 11 20582530 20582530 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004211 exon3 c.C663A p.A221A . . . SLC6A5 9152 broad.mit.edu 36 11 20624984 20624984 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004211 exon14 c.G1998T p.E666D . . . NELL1 4745 broad.mit.edu 36 11 20761936 20761936 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006157 exon3 c.C319T p.R107X . . . NELL1 4745 broad.mit.edu 36 11 21512600 21512600 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006157 exon16 c.G1750A p.D584N . . . ANO5 203859 broad.mit.edu 36 11 22251001 22251001 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142649 exon19 c.G2122A p.A708T . . . SLC17A6 57084 broad.mit.edu 36 11 22340903 22340903 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020346 exon6 c.T704G p.I235S . . . SLC17A6 57084 broad.mit.edu 36 11 22348248 22348248 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020346 exon8 c.T979C p.Y327H . . . FANCF 2188 broad.mit.edu 36 11 22603865 22603865 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_022725 exon1 c.T68C p.V23A . . . SVIP 258010 broad.mit.edu 36 11 22805386 22805386 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_148893 exon3 c.G162T p.K54N . . . LUZP2 338645 broad.mit.edu 36 11 24707379 24707379 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009909 exon2 c.G151T p.E51X . . . MUC15 143662 broad.mit.edu 36 11 26543900 26543900 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135092 exon3 c.G163T p.D55Y . . . ANO3 63982 broad.mit.edu 36 11 26576495 26576495 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031418 exon15 c.C1455A p.V485V . . . ANO3 63982 broad.mit.edu 36 11 26621385 26621385 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031418 exon23 c.G2356A p.E786K . . . SLC5A12 159963 broad.mit.edu 36 11 26651530 26651530 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178498 exon14 c.G1702A p.E568K . . . SLC5A12 159963 broad.mit.edu 36 11 26699757 26699757 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178498 exon1 c.C81A p.F27L . . . BBOX1 8424 broad.mit.edu 36 11 27071482 27071482 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003986 exon5 c.T526G p.F176V . . . CCDC34 91057 broad.mit.edu 36 11 27335634 27335634 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030771 exon2 c.A390C p.E130D . . . LGR4 55366 broad.mit.edu 36 11 27347083 27347083 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018490 exon18 c.G1763A p.G588E . . . LGR4 55366 broad.mit.edu 36 11 27352111 27352111 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018490 exon14 c.C1240T p.P414S . . . KIF18A 81930 broad.mit.edu 36 11 28060984 28060984 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031217 exon9 c.C1257T p.I419I . . . KIF18A 81930 broad.mit.edu 36 11 28076022 28076022 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031217 exon2 c.C49T p.R17C . . . NAP1L4 4676 broad.mit.edu 36 11 2929121 2929121 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005969 exon14 c.G1066T p.E356X . . . IFITM2 10581 broad.mit.edu 36 11 298216 298216 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006435 exon1 c.C24A p.F8L . . . CARS 833 broad.mit.edu 36 11 2998129 2998129 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014437 exon11 c.G1163T p.S388I . . . KCNA4 3739 broad.mit.edu 36 11 29989010 29989010 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002233 exon2 c.C1792T p.R598W . . . KCNA4 3739 broad.mit.edu 36 11 29990076 29990076 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002233 exon2 c.G726A p.K242K . . . Unknown 0 broad.mit.edu 36 11 30859305 30859305 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020869 exon19 c.G2911A p.G971R . . . Unknown 0 broad.mit.edu 36 11 30877740 30877740 + IGR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020869 exon16 c.G2391T p.E797D . . . Unknown 0 broad.mit.edu 36 11 30893676 30893676 + IGR SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020869 exon8 c.C1205A p.S402Y . . . Unknown 0 broad.mit.edu 36 11 30909896 30909896 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020869 exon1 c.G132A p.T44T . . . Unknown 0 broad.mit.edu 36 11 30909965 30909965 + IGR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020869 exon1 c.G63T p.Q21H . . . PAX6 5080 broad.mit.edu 36 11 31771868 31771868 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127612 exon10 c.G824T p.R275I . . . PAX6 5080 broad.mit.edu 36 11 31772850 31772850 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127612 exon8 c.G586T p.D196Y . . . RCN1 5954 broad.mit.edu 36 11 32075371 32075371 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002901 exon2 c.C360T p.V120V . . . WT1 7490 broad.mit.edu 36 11 32378146 32378146 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198551 exon6 c.G386A p.S129N WT1,peritoneum,NS,Substitution - Missense,-1 . . CCDC73 493860 broad.mit.edu 36 11 32589323 32589323 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008391 exon17 c.G2961T p.K987N . . . CCDC73 493860 broad.mit.edu 36 11 32592660 32592660 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008391 exon16 c.G1780T p.D594Y . . . CCDC73 493860 broad.mit.edu 36 11 32620172 32620172 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008391 exon13 c.G972T p.E324D . . . CCDC73 493860 broad.mit.edu 36 11 32653718 32653718 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001008391 exon9 c.A614C p.K205T . . . QSER1 79832 broad.mit.edu 36 11 32910901 32910901 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001076786 exon4 c.T1134G p.F378L . . . QSER1 79832 broad.mit.edu 36 11 32954460 32954460 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076786 exon13 c.C5072A p.S1691Y . . . CSTF3 1479 broad.mit.edu 36 11 33063855 33063855 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001326 exon20 c.G1931A p.R644Q . . . HIPK3 10114 broad.mit.edu 36 11 33317581 33317581 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001048200 exon6 c.G1538T p.R513I . . . HIPK3 10114 broad.mit.edu 36 11 33326689 33326689 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001048200 exon12 c.T2352C p.I784I . . . C11orf41 25758 broad.mit.edu 36 11 33520996 33520996 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012194 exon1 c.C420A p.A140A . . . C11orf41 25758 broad.mit.edu 36 11 33521140 33521140 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012194 exon1 c.C564A p.I188I . . . C11orf41 25758 broad.mit.edu 36 11 33521771 33521771 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_012194 exon1 c.T1195G p.F399V . . . C11orf41 25758 broad.mit.edu 36 11 33521952 33521952 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012194 exon1 c.C1376A p.S459Y . . . C11orf41 25758 broad.mit.edu 36 11 33537980 33537980 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012194 exon6 c.C3074T p.S1025L . . . LMO2 4005 broad.mit.edu 36 11 33837522 33837522 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142316 exon3 c.G433A p.E145K . . . CAPRIN1 4076 broad.mit.edu 36 11 34057814 34057814 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203364 exon7 c.A752G p.N251S . . . CAPRIN1 4076 broad.mit.edu 36 11 34061099 34061099 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203364 exon9 c.G901A p.A301T . . . NAT10 55226 broad.mit.edu 36 11 34090184 34090184 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024662 exon4 c.G210T p.K70N . . . NAT10 55226 broad.mit.edu 36 11 34109040 34109040 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144030 exon11 c.C1133T p.T378M . . . CAT 847 broad.mit.edu 36 11 34434313 34434313 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001752 exon7 c.C891T p.F297F . . . PDHX 8050 broad.mit.edu 36 11 34956278 34956278 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003477 exon8 c.C996A p.I332I . . . SLC1A2 6506 broad.mit.edu 36 11 35290359 35290359 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004171 exon4 c.C523A p.L175I . . . PAMR1 25891 broad.mit.edu 36 11 35412707 35412707 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001991 exon10 c.G1555T p.D519Y . . . RAG1 5896 broad.mit.edu 36 11 36551937 36551937 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000448 exon2 c.G507A p.S169S . . . RAG1 5896 broad.mit.edu 36 11 36553090 36553090 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000448 exon2 c.G1660A p.D554N . . . NUP98 4928 broad.mit.edu 36 11 3661169 3661169 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139132 exon29 c.G4533T p.E1511D . . . NUP98 4928 broad.mit.edu 36 11 3697281 3697281 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005387 exon18 c.G2387T p.R796M . . . NUP98 4928 broad.mit.edu 36 11 3709366 3709366 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005387 exon14 c.C1612A p.P538T . . . PGAP2 27315 broad.mit.edu 36 11 3795179 3795179 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014489 exon3 c.C186A p.F62L . . . PGAP2 27315 broad.mit.edu 36 11 3795272 3795272 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014489 exon3 c.C279T p.F93F . . . LRRC4C 57689 broad.mit.edu 36 11 40093453 40093453 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020929 exon2 c.G966A p.S322S . . . RRM1 6240 broad.mit.edu 36 11 4104866 4104866 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033 exon14 c.G1496A p.R499H . . . OR52B4 143496 broad.mit.edu 36 11 4345519 4345519 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005161 exon1 c.C583T p.R195X . . . OR52B4 143496 broad.mit.edu 36 11 4345586 4345586 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005161 exon1 c.G516A p.Q172Q . . . HSD17B12 51144 broad.mit.edu 36 11 43832858 43832858 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016142 exon10 c.C702T p.F234F . . . ACCSL 390110 broad.mit.edu 36 11 44031577 44031577 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001031854 exon8 c.C994A p.L332M . . . ACCSL 390110 broad.mit.edu 36 11 44037970 44037970 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001031854 exon14 c.G1631A p.R544H . . . ACCS 84680 broad.mit.edu 36 11 44045808 44045808 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032592 exon2 c.A55G p.T19A . . . ACCS 84680 broad.mit.edu 36 11 44045956 44045956 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032592 exon2 c.G203T p.R68I . . . ACCS 84680 broad.mit.edu 36 11 44057744 44057744 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032592 exon10 c.A921C p.E307D . . . ACCS 84680 broad.mit.edu 36 11 44061346 44061346 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032592 exon13 c.C1163T p.A388V . . . EXT2 2132 broad.mit.edu 36 11 44122399 44122399 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001178083 exon8 c.G1200T p.E400D . . . OR52K1 390036 broad.mit.edu 36 11 4467483 4467483 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005171 exon1 c.C777A p.I259I . . . TSPAN18 90139 broad.mit.edu 36 11 44897998 44897998 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_130783 exon7 c.C487T p.R163X . . . C11orf40 143501 broad.mit.edu 36 11 4551122 4551122 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144663 exon2 c.T298G p.F100V . . . C11orf40 143501 broad.mit.edu 36 11 4555576 4555576 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144663 exon1 c.C51A p.S17S . . . OR52I2 143502 broad.mit.edu 36 11 4565109 4565109 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005170 exon1 c.G491T p.R164I . . . OR52I1 390037 broad.mit.edu 36 11 4572002 4572002 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005169 exon1 c.T158G p.I53S . . . OR52I1 390037 broad.mit.edu 36 11 4572211 4572211 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005169 exon1 c.G367A p.A123T . . . PEX16 9409 broad.mit.edu 36 11 45893850 45893850 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_057174 exon4 c.C339T p.I113I . . . GYLTL1B 120071 broad.mit.edu 36 11 45906489 45906489 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152312 exon13 c.T1940G p.L647R . . . PHF21A 51317 broad.mit.edu 36 11 45913866 45913866 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001101802 exon17 c.C1682A p.A561E . . . PHF21A 51317 broad.mit.edu 36 11 45947950 45947950 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001101802 exon8 c.C691A p.L231I . . . OR51E1 143503 broad.mit.edu 36 11 4630528 4630528 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152430 exon2 c.C196A p.L66I . . . CHRM4 1132 broad.mit.edu 36 11 46363497 46363497 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000741 exon1 c.G1187A p.R396H . . . OR51E2 81285 broad.mit.edu 36 11 4659733 4659733 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030774 exon2 c.G785A p.R262H . . . ATG13 9776 broad.mit.edu 36 11 46650413 46650413 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142673 exon18 c.G1509T p.E503D . . . F2 2147 broad.mit.edu 36 11 46717455 46717455 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000506 exon14 c.A1790G p.D597G . . . LRP4 4038 broad.mit.edu 36 11 46859879 46859879 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002334 exon20 c.G2764A p.A922T . . . ARFGAP2 84364 broad.mit.edu 36 11 47149596 47149596 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032389 exon10 c.C898T p.R300X . . . DDB2 1643 broad.mit.edu 36 11 47216065 47216065 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000107 exon8 c.C1125T p.F375F . . . MADD 8567 broad.mit.edu 36 11 47287718 47287718 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003682 exon28 c.C4137A p.I1379I . . . MADD 8567 broad.mit.edu 36 11 47289892 47289892 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003682 exon29 c.C4192T p.R1398C . . . OR51F1 256892 broad.mit.edu 36 11 4746931 4746931 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004752 exon1 c.C793T p.R265C . . . AGBL2 79841 broad.mit.edu 36 11 47645132 47645132 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024783 exon16 c.G2400T p.E800D . . . AGBL2 79841 broad.mit.edu 36 11 47655444 47655444 + Nonsense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024783 exon13 c.T2102G p.L701X . . . AGBL2 79841 broad.mit.edu 36 11 47658173 47658173 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024783 exon12 c.C1944T p.I648I . . . AGBL2 79841 broad.mit.edu 36 11 47664075 47664075 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024783 exon10 c.C1734T p.Y578Y . . . PTPRJ 5795 broad.mit.edu 36 11 48117747 48117747 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002843 exon11 c.G2286A p.A762A . . . PTPRJ 5795 broad.mit.edu 36 11 48128309 48128309 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002843 exon18 c.G3136A p.E1046K . . . OR4B1 119765 broad.mit.edu 36 11 48195341 48195341 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005470 exon1 c.G404A p.S135N . . . OR4X2 119764 broad.mit.edu 36 11 48223394 48223394 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004727 exon1 c.C163A p.L55I . . . OR51S1 119692 broad.mit.edu 36 11 4826435 4826435 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004758 exon1 c.C580T p.R194C . . . OR4C3 256144 broad.mit.edu 36 11 48303893 48303893 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004702 exon1 c.C825A p.F275L . . . OR4A47 403253 broad.mit.edu 36 11 48467428 48467428 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001005512 exon1 c.A508T p.N170Y . . . OR51T1 401665 broad.mit.edu 36 11 4859627 4859627 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004759 exon1 c.G3T p.M1I . . . OR51T1 401665 broad.mit.edu 36 11 4860080 4860080 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004759 exon1 c.C456T p.F152F . . . OR51G2 81282 broad.mit.edu 36 11 4892989 4892989 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005238 exon1 c.A481C p.I161L . . . OR51G2 81282 broad.mit.edu 36 11 4893146 4893146 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005238 exon1 c.C324A p.F108L . . . MMP26 56547 broad.mit.edu 36 11 4968447 4968447 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021801 exon3 c.G364T p.D122Y . . . MMP26 56547 broad.mit.edu 36 11 4969864 4969864 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021801 exon5 c.C690A p.Y230X . . . OR51L1 119682 broad.mit.edu 36 11 4977466 4977466 + Silent SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004755 exon1 c.T678A p.T226T . . . OR4C13 283092 broad.mit.edu 36 11 49931178 49931178 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001955 exon1 c.C628A p.L210I . . . OR4C12 283093 broad.mit.edu 36 11 49960139 49960139 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005270 exon1 c.C475A p.L159I . . . OR52A5 390054 broad.mit.edu 36 11 5109932 5109932 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005160 exon1 c.C517T p.R173X . . . OR4A5 81318 broad.mit.edu 36 11 51268936 51268936 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005272 exon1 c.C36T p.L12L . . . OR51B4 79339 broad.mit.edu 36 11 5279453 5279453 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033179 exon1 c.C300A p.F100L . . . OR51B2 79345 broad.mit.edu 36 11 5301598 5301598 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033180 exon1 c.C506T p.S169F . . . OR51B6 390058 broad.mit.edu 36 11 5330164 5330164 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004750 exon1 c.T851G p.F284C . . . OR51M1 390059 broad.mit.edu 36 11 5367608 5367608 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004756 exon1 c.T404G p.L135R . . . OR51I1 390063 broad.mit.edu 36 11 5418545 5418545 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005288 exon1 c.C776T p.A259V . . . OR51I1 390063 broad.mit.edu 36 11 5418917 5418917 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005288 exon1 c.T404C p.V135A . . . OR51I2 390064 broad.mit.edu 36 11 5431331 5431331 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004754 exon1 c.C37A p.L13I . . . OR52D1 390066 broad.mit.edu 36 11 5466649 5466649 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005163 exon1 c.C137T p.A46V . . . OR52D1 390066 broad.mit.edu 36 11 5466884 5466884 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005163 exon1 c.T372A p.D124E . . . UBQLN3 50613 broad.mit.edu 36 11 5485564 5485564 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017481 exon2 c.G1801T p.D601Y . . . UBQLN3 50613 broad.mit.edu 36 11 5486314 5486314 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017481 exon2 c.G1051A p.E351K . . . OR4C15 81309 broad.mit.edu 36 11 55078703 55078703 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001920 exon1 c.C345A p.F115L . . . OR4C15 81309 broad.mit.edu 36 11 55079308 55079308 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001920 exon1 c.C950A p.A317D . . . OR4C15 81309 broad.mit.edu 36 11 55079468 55079468 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001001920 exon1 c.T1110G p.L370L . . . OR4C6 219432 broad.mit.edu 36 11 55190067 55190067 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004704 exon1 c.G849T p.L283F . . . OR52H1 390067 broad.mit.edu 36 11 5523140 5523140 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005289 exon1 c.C190A p.H64N . . . OR5D13 390142 broad.mit.edu 36 11 55298267 55298267 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001967 exon1 c.C778A p.L260I . . . OR5L1 219437 broad.mit.edu 36 11 55335729 55335729 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004738 exon1 c.T211G p.F71V . . . OR5L1 219437 broad.mit.edu 36 11 55336157 55336157 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004738 exon1 c.C639T p.I213I . . . OR5L1 219437 broad.mit.edu 36 11 55336302 55336302 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004738 exon1 c.C784T p.P262S . . . OR5D18 219438 broad.mit.edu 36 11 55344227 55344227 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001952 exon1 c.C546A p.F182L . . . OR5L2 26338 broad.mit.edu 36 11 55351737 55351737 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004739 exon1 c.C467A p.S156Y . . . SPRYD5 84767 broad.mit.edu 36 11 55415560 55415560 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032681 exon7 c.T1235C p.F412S . . . OR5W2 390148 broad.mit.edu 36 11 55438141 55438141 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001960 exon1 c.G494A p.R165H . . . OR5I1 10798 broad.mit.edu 36 11 55459799 55459799 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006637 exon1 c.C654A p.I218I . . . OR5F1 338674 broad.mit.edu 36 11 55518160 55518160 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003697 exon1 c.T518C p.V173A . . . OR5F1 338674 broad.mit.edu 36 11 55518378 55518378 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003697 exon1 c.G300T p.Q100H . . . OR5AS1 219447 broad.mit.edu 36 11 55554848 55554848 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001921 exon1 c.C378A p.I126I . . . OR8H3 390152 broad.mit.edu 36 11 55646981 55646981 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005201 exon1 c.C557A p.A186D . . . OR5J2 282775 broad.mit.edu 36 11 55701380 55701380 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005492 exon1 c.C711A p.A237A . . . OR5T3 390154 broad.mit.edu 36 11 55776545 55776545 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004747 exon1 c.C294A p.F98L . . . OR5T3 390154 broad.mit.edu 36 11 55776681 55776681 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004747 exon1 c.C430A p.L144I . . . OR8H1 219469 broad.mit.edu 36 11 55814198 55814198 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005199 exon1 c.G917T p.R306I . . . OR8J1 219477 broad.mit.edu 36 11 55884790 55884790 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005205 exon1 c.C492A p.F164L . . . OR8J1 219477 broad.mit.edu 36 11 55885002 55885002 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001005205 exon1 c.A704C p.K235T . . . TRIM6 117854 broad.mit.edu 36 11 5589101 5589101 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003818 exon8 c.C1504A p.P502T . . . Unknown 0 broad.mit.edu 36 11 55900131 55900131 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005204 exon1 c.C456T p.S152S . . . OR5M9 390162 broad.mit.edu 36 11 55987231 55987231 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004743 exon1 c.G223A p.V75I . . . OR5M3 219482 broad.mit.edu 36 11 55994250 55994250 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004742 exon1 c.C300A p.F100L . . . OR5M8 219484 broad.mit.edu 36 11 56014740 56014740 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005282 exon1 c.G683A p.R228H . . . OR5M10 390167 broad.mit.edu 36 11 56101243 56101243 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004741 exon1 c.C531A p.F177L . . . OR5M1 390168 broad.mit.edu 36 11 56137497 56137497 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004740 exon1 c.G58A p.D20N . . . TRIM22 10346 broad.mit.edu 36 11 5674432 5674432 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199573 exon2 c.C394T p.R132C . . . TNKS1BP1 85456 broad.mit.edu 36 11 56834295 56834295 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033396 exon6 c.C2466T p.D822D . . . SSRP1 6749 broad.mit.edu 36 11 56850861 56850861 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003146 exon16 c.G1950T p.K650N . . . PRG3 10394 broad.mit.edu 36 11 56903816 56903816 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006093 exon3 c.A102C p.A34A . . . PRG2 5553 broad.mit.edu 36 11 56913268 56913268 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002728 exon3 c.G157A p.E53K . . . SERPING1 710 broad.mit.edu 36 11 57124001 57124001 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000062 exon3 c.A125G p.E42G . . . ZDHHC5 25921 broad.mit.edu 36 11 57217956 57217956 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015457 exon8 c.G878T p.R293I . . . TMX2 51075 broad.mit.edu 36 11 57262788 57262788 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015959 exon5 c.T518G p.F173C . . . CTNND1 1500 broad.mit.edu 36 11 57325959 57325959 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001331 exon7 c.T1135G p.L379V . . . OR9Q1 219956 broad.mit.edu 36 11 57704134 57704134 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005212 exon3 c.C642A p.I214I . . . OR1S1 219959 broad.mit.edu 36 11 57739098 57739098 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004458 exon1 c.T306C p.S102S . . . OR5B3 441608 broad.mit.edu 36 11 57926890 57926890 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005469 exon1 c.G569T p.R190I . . . OR5B12 390191 broad.mit.edu 36 11 57963717 57963717 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004733 exon1 c.T484A p.F162I . . . OR5B12 390191 broad.mit.edu 36 11 57963929 57963929 + Nonsense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004733 exon1 c.T272A p.L91X . . . OR5B21 219968 broad.mit.edu 36 11 58031632 58031632 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005218 exon1 c.T523G p.F175V . . . LPXN 9404 broad.mit.edu 36 11 58051576 58051576 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143995 exon9 c.C1103T p.S368L . . . ZFP91 80829 broad.mit.edu 36 11 58141644 58141644 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053023 exon11 c.C1602A p.I534I . . . OR52E8 390079 broad.mit.edu 36 11 5834684 5834684 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005168 exon1 c.G825T p.Q275H . . . GLYATL2 219970 broad.mit.edu 36 11 58361114 58361114 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145016 exon5 c.G426T p.K142N . . . GLYATL1 92292 broad.mit.edu 36 11 58478903 58478903 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080661 exon5 c.A364G p.N122D . . . GLYATL1 92292 broad.mit.edu 36 11 58479959 58479959 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080661 exon7 c.C885A p.I295I . . . OR52E4 390081 broad.mit.edu 36 11 5862304 5862304 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005165 exon1 c.C206A p.S69Y . . . OR52E4 390081 broad.mit.edu 36 11 5862695 5862695 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005165 exon1 c.C597A p.I199I . . . OR52E4 390081 broad.mit.edu 36 11 5862874 5862874 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005165 exon1 c.C776A p.S259Y . . . FAM111B 374393 broad.mit.edu 36 11 58648370 58648370 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142703 exon3 c.A134C p.N45T . . . FAM111B 374393 broad.mit.edu 36 11 58648734 58648734 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142703 exon3 c.G498T p.K166N . . . FAM111B 374393 broad.mit.edu 36 11 58649395 58649395 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142703 exon3 c.C1159T p.R387W . . . FAM111B 374393 broad.mit.edu 36 11 58649684 58649684 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142703 exon3 c.C1448T p.A483V . . . FAM111B 374393 broad.mit.edu 36 11 58650217 58650217 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142703 exon3 c.C1981A p.L661I . . . FAM111A 63901 broad.mit.edu 36 11 58676416 58676416 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142521 exon5 c.C699A p.S233S . . . FAM111A 63901 broad.mit.edu 36 11 58677331 58677331 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142521 exon5 c.T1614C p.F538F . . . OR4D6 219983 broad.mit.edu 36 11 58981102 58981102 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004708 exon1 c.C93A p.F31L . . . OR4D10 390197 broad.mit.edu 36 11 59001509 59001509 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004705 exon1 c.G31T p.E11X . . . OR4D10 390197 broad.mit.edu 36 11 59001816 59001816 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004705 exon1 c.T338G p.F113C . . . OR4D11 219986 broad.mit.edu 36 11 59027931 59027931 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004706 exon1 c.C307A p.L103I . . . OR4D9 390199 broad.mit.edu 36 11 59038972 59038972 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004711 exon1 c.G11A p.R4K . . . OR56A3 390083 broad.mit.edu 36 11 5925535 5925535 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001003443 exon1 c.T383C p.V128A . . . STX3 6809 broad.mit.edu 36 11 59317537 59317537 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178040 exon8 c.G649T p.D217Y . . . GIF 2694 broad.mit.edu 36 11 59355754 59355754 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005142 exon8 c.C1165A p.L389I . . . GIF 2694 broad.mit.edu 36 11 59366590 59366590 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005142 exon4 c.C413T p.A138V . . . TCN1 6947 broad.mit.edu 36 11 59383276 59383276 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001062 exon5 c.G597T p.K199N . . . MS4A2 2206 broad.mit.edu 36 11 59613864 59613864 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000139 exon2 c.C180T p.F60F . . . MS4A2 2206 broad.mit.edu 36 11 59618094 59618094 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000139 exon6 c.G619T p.E207X . . . OR52L1 338751 broad.mit.edu 36 11 5964611 5964611 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005173 exon1 c.G126A p.Q42Q . . . OR56A4 120793 broad.mit.edu 36 11 5980134 5980134 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005179 exon1 c.C821A p.S274Y . . . MS4A4A 51338 broad.mit.edu 36 11 59821322 59821322 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148975 exon3 c.G278A p.G93E . . . MS4A4A 51338 broad.mit.edu 36 11 59825090 59825090 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148975 exon4 c.G371T p.R124I . . . MS4A14 84689 broad.mit.edu 36 11 59940152 59940152 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032597 exon5 c.G1135T p.D379Y . . . MS4A14 84689 broad.mit.edu 36 11 59940516 59940516 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032597 exon5 c.G1499T p.R500I . . . MS4A5 64232 broad.mit.edu 36 11 59971771 59971771 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023945 exon5 c.G566T p.C189F . . . MS4A1 931 broad.mit.edu 36 11 59992454 59992454 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021950 exon7 c.G831A p.T277T . . . OR56A1 120796 broad.mit.edu 36 11 6004740 6004740 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001917 exon1 c.C771A p.F257L . . . MS4A8B 83661 broad.mit.edu 36 11 60224917 60224917 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031457 exon2 c.C8T p.S3L . . . MS4A15 219995 broad.mit.edu 36 11 60297910 60297910 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098835 exon6 c.G523A p.V175M . . . MS4A15 219995 broad.mit.edu 36 11 60299669 60299669 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098835 exon7 c.C628T p.P210S . . . MS4A10 341116 broad.mit.edu 36 11 60315088 60315088 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206893 exon3 c.G249A p.K83K . . . CCDC86 79080 broad.mit.edu 36 11 60366599 60366599 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024098 exon1 c.G426T p.K142N . . . ZP1 22917 broad.mit.edu 36 11 60391788 60391788 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207341 exon1 c.C178T p.L60F . . . ZP1 22917 broad.mit.edu 36 11 60395154 60395154 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207341 exon5 c.C975A p.V325V . . . TMEM109 79073 broad.mit.edu 36 11 60445865 60445865 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024092 exon4 c.C384T p.V128V . . . TMEM132A 54972 broad.mit.edu 36 11 60460920 60460920 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017870 exon11 c.C3040T p.R1014C . . . CD5 921 broad.mit.edu 36 11 60643390 60643390 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014207 exon5 c.A572G p.D191G . . . CD5 921 broad.mit.edu 36 11 60649092 60649092 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014207 exon9 c.G1292A p.R431H . . . VPS37C 55048 broad.mit.edu 36 11 60658146 60658146 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017966 exon3 c.C203T p.S68L . . . DDB1 1642 broad.mit.edu 36 11 60846386 60846386 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001923 exon9 c.C1080T p.V360V . . . DDB1 1642 broad.mit.edu 36 11 60847096 60847096 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001923 exon8 c.T968G p.F323C . . . TMEM138 51524 broad.mit.edu 36 11 60890096 60890096 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016464 exon3 c.C132A p.I44I . . . CPSF7 79869 broad.mit.edu 36 11 60940316 60940316 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136040 exon6 c.C802T p.P268S . . . SDHAF2 54949 broad.mit.edu 36 11 60961707 60961707 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017841 exon2 c.C71A p.P24H . . . C11orf66 220004 broad.mit.edu 36 11 61005910 61005910 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145017 exon2 c.C53T p.S18L . . . CDHR5 53841 broad.mit.edu 36 11 611658 611658 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031264 exon5 c.G411A p.T137T . . . C11orf9 745 broad.mit.edu 36 11 61298073 61298073 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013279 exon8 c.G1147A p.D383N . . . FEN1 2237 broad.mit.edu 36 11 61320395 61320395 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004111 exon2 c.G986A p.S329N . . . SCGB1D1 10648 broad.mit.edu 36 11 61717461 61717461 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006552 exon3 c.G258T p.E86D . . . AHNAK 79026 broad.mit.edu 36 11 62042829 62042829 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001620 exon5 c.C15636T p.V5212V . . . AHNAK 79026 broad.mit.edu 36 11 62042891 62042891 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001620 exon5 c.C15574T p.P5192S . . . AHNAK 79026 broad.mit.edu 36 11 62043570 62043570 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001620 exon5 c.C14895T p.I4965I . . . AHNAK 79026 broad.mit.edu 36 11 62046849 62046849 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001620 exon5 c.G11616T p.K3872N . . . AHNAK 79026 broad.mit.edu 36 11 62047301 62047301 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001620 exon5 c.G11164A p.E3722K . . . AHNAK 79026 broad.mit.edu 36 11 62050368 62050368 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001620 exon5 c.G8097T p.E2699D . . . AHNAK 79026 broad.mit.edu 36 11 62052903 62052903 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001620 exon5 c.G5562T p.K1854N . . . AHNAK 79026 broad.mit.edu 36 11 62054115 62054115 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001620 exon5 c.G4350T p.K1450N . . . AHNAK 79026 broad.mit.edu 36 11 62054226 62054226 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001620 exon5 c.C4239T p.V1413V . . . AHNAK 79026 broad.mit.edu 36 11 62056105 62056105 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001620 exon5 c.T2360G p.V787G . . . AHNAK 79026 broad.mit.edu 36 11 62060030 62060030 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024060 exon3 c.G117T p.Q39H . . . B3GAT3 26229 broad.mit.edu 36 11 62141090 62141090 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012200 exon3 c.G563T p.G188V . . . CNGA4 1262 broad.mit.edu 36 11 6218062 6218062 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037329 exon4 c.C462T p.F154F . . . NXF1 10482 broad.mit.edu 36 11 62322609 62322609 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006362 exon11 c.G1031A p.R344Q . . . SLC22A6 9356 broad.mit.edu 36 11 62503577 62503577 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004790 exon8 c.C1320T p.C440C . . . SLC22A25 387601 broad.mit.edu 36 11 62752554 62752554 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199352 exon2 c.C461A p.A154D . . . SLC22A25 387601 broad.mit.edu 36 11 62753685 62753685 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199352 exon1 c.C16A p.L6I . . . LGALS12 85329 broad.mit.edu 36 11 63039671 63039671 + Silent SNP C T T rs36007310 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142536 exon7 c.C747T p.F249F . . . RTN3 10313 broad.mit.edu 36 11 63242816 63242816 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201428 exon2 c.C209A p.S70Y . . . RTN3 10313 broad.mit.edu 36 11 63244957 63244957 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_201428 exon2 c.C2350A p.L784I . . . MARK2 2011 broad.mit.edu 36 11 63423990 63423990 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017490 exon8 c.C501T p.F167F . . . MARK2 2011 broad.mit.edu 36 11 63424651 63424651 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017490 exon9 c.C714A p.F238L . . . RCOR2 283248 broad.mit.edu 36 11 63438132 63438132 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173587 exon8 c.G761A p.R254Q . . . RCOR2 283248 broad.mit.edu 36 11 63438525 63438525 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173587 exon6 c.G545A p.R182Q . . . STIP1 10963 broad.mit.edu 36 11 63721600 63721600 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006819 exon7 c.G859T p.E287X . . . NUDT22 84304 broad.mit.edu 36 11 63751681 63751681 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128612 exon3 c.C546A p.L182L . . . APBB1 322 broad.mit.edu 36 11 6379195 6379195 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164 exon10 c.G1544T p.G515V . . . KCNK4 50801 broad.mit.edu 36 11 63821303 63821303 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033310 exon4 c.C450T p.I150I . . . KCNK4 50801 broad.mit.edu 36 11 63821556 63821556 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033310 exon5 c.G516A p.A172A . . . SLC22A11 55867 broad.mit.edu 36 11 64088461 64088461 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018484 exon5 c.G927T p.K309N . . . NRXN2 9379 broad.mit.edu 36 11 64175337 64175337 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015080 exon14 c.G2884A p.G962S NRXN2,skin,NS,Substitution - Missense,0 . . RASGRP2 10235 broad.mit.edu 36 11 64259602 64259602 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098670 exon11 c.G1284T p.E428D . . . RASGRP2 10235 broad.mit.edu 36 11 64259628 64259628 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098670 exon11 c.C1258T p.Q420X . . . TRIM3 10612 broad.mit.edu 36 11 6426981 6426981 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006458 exon13 c.C2088A p.F696L . . . PYGM 5837 broad.mit.edu 36 11 64276047 64276047 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164716 exon12 c.G1429A p.D477N . . . SF1 7536 broad.mit.edu 36 11 64293616 64293616 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201998 exon6 c.A521C p.K174T . . . EHD1 10938 broad.mit.edu 36 11 64379505 64379505 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006795 exon4 c.G945T p.K315N . . . PPP2R5B 5526 broad.mit.edu 36 11 64454385 64454385 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006244 exon7 c.C738T p.F246F . . . ZFPL1 7542 broad.mit.edu 36 11 64610523 64610523 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006782 exon4 c.C275A p.P92H . . . SYVN1 84447 broad.mit.edu 36 11 64652618 64652618 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032431 exon15 c.G1737A p.R579R . . . SLC22A20 440044 broad.mit.edu 36 11 64746580 64746580 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004326 exon4 c.G700T p.E234X . . . DNHD1 144132 broad.mit.edu 36 11 6480610 6480610 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144666 exon4 c.C798A p.S266R . . . KAT5 10524 broad.mit.edu 36 11 65238608 65238608 + Nonsense_Mutation SNP C T T rs4645921 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182710 exon7 c.C757T p.R253X . . . SNX32 254122 broad.mit.edu 36 11 65376963 65376963 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152760 exon12 c.G1116T p.K372N . . . DNHD1 144132 broad.mit.edu 36 11 6544529 6544529 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144666 exon35 c.G11343T p.K3781N . . . DNHD1 144132 broad.mit.edu 36 11 6544933 6544933 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_144666 exon36 c.T11618G p.L3873R . . . BANF1 8815 broad.mit.edu 36 11 65527793 65527793 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143985 exon3 c.C244T p.R82X . . . CATSPER1 117144 broad.mit.edu 36 11 65544402 65544402 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_053054 exon8 c.A2026G p.T676A . . . PACS1 55690 broad.mit.edu 36 11 65734424 65734424 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018026 exon3 c.C460A p.L154I . . . KLC2 64837 broad.mit.edu 36 11 65786185 65786185 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001134775 exon4 c.G475A p.V159I . . . SLC29A2 3177 broad.mit.edu 36 11 65893471 65893471 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001532 exon3 c.C220T p.L74L . . . NPAS4 266743 broad.mit.edu 36 11 65947742 65947742 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178864 exon6 c.C926G p.A309G . . . NPAS4 266743 broad.mit.edu 36 11 65948698 65948698 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178864 exon7 c.G1761A p.T587T . . . PELI3 246330 broad.mit.edu 36 11 65997330 65997330 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145065 exon6 c.G499T p.D167Y . . . DPP3 10072 broad.mit.edu 36 11 66016875 66016875 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005700 exon10 c.G1101T p.K367N . . . ACTN3 89 broad.mit.edu 36 11 66086338 66086338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001104 exon19 c.G2357A p.R786Q . . . ACTN3 89 broad.mit.edu 36 11 66087132 66087132 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001104 exon21 c.C2598T p.A866A . . . CTSF 8722 broad.mit.edu 36 11 66091336 66091336 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003793 exon4 c.G564T p.K188N . . . DCHS1 8642 broad.mit.edu 36 11 6611658 6611658 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003737 exon4 c.G2156A p.R719Q . . . CCDC87 55231 broad.mit.edu 36 11 66116705 66116705 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018219 exon1 c.G358A p.V120M . . . RBM14 10432 broad.mit.edu 36 11 66148564 66148564 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006328 exon2 c.G641A p.R214H . . . RBM4 5936 broad.mit.edu 36 11 66164041 66164041 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198843 exon2 c.C283T p.R95X . . . RBM4B 83759 broad.mit.edu 36 11 66193050 66193050 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031492 exon3 c.C701T p.A234V . . . SPTBN2 6712 broad.mit.edu 36 11 66211142 66211142 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006946 exon35 c.C6795T p.S2265S . . . SPTBN2 6712 broad.mit.edu 36 11 66212792 66212792 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006946 exon30 c.G6139A p.E2047K SPTBN2,skin,NS,Substitution - Missense,0 . . SPTBN2 6712 broad.mit.edu 36 11 66239388 66239388 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006946 exon4 c.G364A p.A122T . . . RCE1 9986 broad.mit.edu 36 11 66370098 66370098 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005133 exon8 c.C946A p.L316I . . . CABP4 57010 broad.mit.edu 36 11 66982483 66982483 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145200 exon5 c.C717T p.L239L . . . ALDH3B2 222 broad.mit.edu 36 11 67190691 67190691 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000695 exon4 c.C81T p.V27V . . . SUV420H1 51111 broad.mit.edu 36 11 67682383 67682383 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017635 exon11 c.C2006T p.A669V . . . SUV420H1 51111 broad.mit.edu 36 11 67695661 67695661 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016028 exon7 c.G745A p.D249N . . . SUV420H1 51111 broad.mit.edu 36 11 67714073 67714073 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016028 exon2 c.G47T p.R16I . . . OR6A2 8590 broad.mit.edu 36 11 6772628 6772628 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003696 exon1 c.C888T p.C296C . . . DEAF1 10522 broad.mit.edu 36 11 678019 678019 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021008 exon4 c.G556T p.E186X . . . PPP6R3 55291 broad.mit.edu 36 11 68125918 68125918 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164164 exon20 c.C1964A p.S655Y . . . CPT1A 1374 broad.mit.edu 36 11 68283668 68283668 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031847 exon18 c.T2180C p.V727A . . . OR10A2 341276 broad.mit.edu 36 11 6847938 6847938 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004460 exon1 c.G377T p.R126M . . . OR10A2 341276 broad.mit.edu 36 11 6848416 6848416 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004460 exon1 c.G855T p.K285N . . . MRGPRD 116512 broad.mit.edu 36 11 68504850 68504850 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_198923 exon1 c.T182G p.F61C . . . OR10A4 283297 broad.mit.edu 36 11 6855340 6855340 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_207186 exon1 c.A886G p.K296E . . . OR2D3 120775 broad.mit.edu 36 11 6898866 6898866 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004684 exon1 c.G58T p.E20X . . . OR2D3 120775 broad.mit.edu 36 11 6898928 6898928 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004684 exon1 c.G120A p.Q40Q . . . FGF19 9965 broad.mit.edu 36 11 69223298 69223298 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005117 exon3 c.C564A p.F188L . . . PPFIA1 8500 broad.mit.edu 36 11 69850355 69850355 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003626 exon7 c.C713A p.S238Y . . . PPFIA1 8500 broad.mit.edu 36 11 69901933 69901933 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003626 exon26 c.G3534T p.K1178N . . . CTTN 2017 broad.mit.edu 36 11 69943516 69943516 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005231 exon9 c.C585T p.F195F . . . CTTN 2017 broad.mit.edu 36 11 69957422 69957422 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005231 exon17 c.A1466G p.Y489C . . . NLRP14 338323 broad.mit.edu 36 11 7020309 7020309 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176822 exon4 c.G476T p.R159I . . . NLRP14 338323 broad.mit.edu 36 11 7021397 7021397 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_176822 exon4 c.G1564T p.D522Y . . . NLRP14 338323 broad.mit.edu 36 11 7024545 7024545 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176822 exon5 c.G2029T p.E677X . . . NLRP14 338323 broad.mit.edu 36 11 7035632 7035632 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176822 exon7 c.A2440C p.K814Q . . . NLRP14 338323 broad.mit.edu 36 11 7036131 7036131 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176822 exon8 c.C2507A p.S836Y . . . NLRP14 338323 broad.mit.edu 36 11 7037836 7037836 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176822 exon9 c.C2769A p.V923V . . . RBMXL2 27288 broad.mit.edu 36 11 7066979 7066979 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014469 exon1 c.G52A p.E18K . . . IL18BP 10068 broad.mit.edu 36 11 71389946 71389946 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039660 exon4 c.G287T p.S96I . . . NUMA1 4926 broad.mit.edu 36 11 71393443 71393443 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006185 exon24 c.G5897A p.R1966H . . . NUMA1 4926 broad.mit.edu 36 11 71406454 71406454 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006185 exon13 c.G1046T p.S349I . . . FOLR2 2350 broad.mit.edu 36 11 71610346 71610346 + Silent SNP G A A rs1803567 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001113536 exon5 c.G660A p.A220A . . . FCHSD2 9873 broad.mit.edu 36 11 72231442 72231442 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014824 exon17 c.G1798T p.E600X . . . FCHSD2 9873 broad.mit.edu 36 11 72238488 72238488 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014824 exon14 c.G1403T p.R468I . . . FCHSD2 9873 broad.mit.edu 36 11 72256713 72256713 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014824 exon13 c.A1153C p.K385Q . . . FCHSD2 9873 broad.mit.edu 36 11 72377665 72377665 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014824 exon6 c.C513T p.I171I . . . ARHGEF17 9828 broad.mit.edu 36 11 72698262 72698262 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014786 exon1 c.G931A p.D311N . . . SYT9 143425 broad.mit.edu 36 11 7291341 7291341 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175733 exon3 c.G637A p.G213R . . . SYT9 143425 broad.mit.edu 36 11 7291490 7291490 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175733 exon3 c.C786A p.I262I . . . SYT9 143425 broad.mit.edu 36 11 7291551 7291551 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175733 exon3 c.C847A p.P283T . . . PLEKHB1 58473 broad.mit.edu 36 11 73050268 73050268 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021200 exon8 c.G705A p.S235S . . . C2CD3 26005 broad.mit.edu 36 11 73430770 73430770 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015531 exon29 c.A5637C p.Q1879H . . . C2CD3 26005 broad.mit.edu 36 11 73467118 73467118 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015531 exon23 c.G4293T p.K1431N . . . C2CD3 26005 broad.mit.edu 36 11 73467184 73467184 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015531 exon23 c.C4227T p.I1409I . . . C2CD3 26005 broad.mit.edu 36 11 73506927 73506927 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015531 exon9 c.G1514T p.R505I . . . P4HA3 283208 broad.mit.edu 36 11 73693077 73693077 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182904 exon2 c.G229T p.E77X . . . PGM2L1 283209 broad.mit.edu 36 11 73725425 73725425 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173582 exon14 c.G1789T p.E597X . . . PGM2L1 283209 broad.mit.edu 36 11 73734204 73734204 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173582 exon9 c.A1176C p.K392N . . . SYT9 143425 broad.mit.edu 36 11 7395928 7395928 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175733 exon5 c.T1330G p.Y444D . . . POLD3 10714 broad.mit.edu 36 11 74007470 74007470 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006591 exon6 c.G633A p.T211T . . . CHRDL2 25884 broad.mit.edu 36 11 74107437 74107437 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015424 exon2 c.C171A p.Y57X . . . RNF169 254225 broad.mit.edu 36 11 74224425 74224425 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098638 exon6 c.G1129A p.E377K . . . XRRA1 143570 broad.mit.edu 36 11 74247951 74247951 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182969 exon12 c.C1046A p.P349H . . . XRRA1 143570 broad.mit.edu 36 11 74295902 74295902 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182969 exon9 c.C697T p.L233L . . . SLCO2B1 11309 broad.mit.edu 36 11 74558424 74558424 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145212 exon3 c.C316T p.R106C . . . MAP6 4135 broad.mit.edu 36 11 74976111 74976111 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033063 exon4 c.G2083A p.D695N . . . DGAT2 84649 broad.mit.edu 36 11 75189156 75189156 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032564 exon8 c.G1122T p.K374N . . . UVRAG 7405 broad.mit.edu 36 11 75268592 75268592 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003369 exon4 c.G292A p.D98N . . . C11orf30 56946 broad.mit.edu 36 11 75840630 75840630 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020193 exon3 c.G151T p.E51X . . . PPFIBP2 8495 broad.mit.edu 36 11 7588209 7588209 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003621 exon6 c.G598T p.E200X . . . TSKU 25987 broad.mit.edu 36 11 76184983 76184983 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015516 exon2 c.C675T p.F225F . . . PPFIBP2 8495 broad.mit.edu 36 11 7629472 7629472 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003621 exon23 c.C2257T p.P753S . . . CYB5R2 51700 broad.mit.edu 36 11 7647048 7647048 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016229 exon5 c.C352T p.R118X . . . OVCH2 341277 broad.mit.edu 36 11 7673447 7673447 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198185 exon12 c.C1212A p.V404V . . . OVCH2 341277 broad.mit.edu 36 11 7681908 7681908 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198185 exon3 c.C203A p.S68Y . . . RSF1 51773 broad.mit.edu 36 11 77056122 77056122 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016578 exon16 c.C3814T p.R1272X . . . RSF1 51773 broad.mit.edu 36 11 77065558 77065558 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016578 exon13 c.C3268T p.R1090X . . . RSF1 51773 broad.mit.edu 36 11 77089610 77089610 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016578 exon6 c.T2312C p.V771A . . . INTS4 92105 broad.mit.edu 36 11 77327476 77327476 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033547 exon10 c.C1034T p.S345L . . . ALG8 79053 broad.mit.edu 36 11 77489722 77489722 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024079 exon13 c.C1517A p.A506D . . . ALG8 79053 broad.mit.edu 36 11 77493114 77493114 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007027 exon11 c.G1212T p.S404S . . . KCTD21 283219 broad.mit.edu 36 11 77562486 77562486 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029859 exon2 c.C763T p.R255X . . . KCTD21 283219 broad.mit.edu 36 11 77563093 77563093 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029859 exon2 c.C156T p.D52D . . . USP35 57558 broad.mit.edu 36 11 77589394 77589394 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020798 exon6 c.G1089A p.S363S . . . USP35 57558 broad.mit.edu 36 11 77598722 77598722 + Nonsense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020798 exon10 c.A2173T p.K725X . . . NARS2 79731 broad.mit.edu 36 11 77954864 77954864 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024678 exon4 c.C475T p.R159C . . . NARS2 79731 broad.mit.edu 36 11 77963140 77963140 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024678 exon1 c.T42C p.C14C . . . ODZ4 26011 broad.mit.edu 36 11 78057931 78057931 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098816 exon32 c.C7107A p.V2369V . . . ODZ4 26011 broad.mit.edu 36 11 78058717 78058717 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098816 exon32 c.C6321A p.L2107L . . . ODZ4 26011 broad.mit.edu 36 11 78059197 78059197 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098816 exon32 c.C5841T p.F1947F . . . ODZ4 26011 broad.mit.edu 36 11 78111516 78111516 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098816 exon24 c.C3645A p.I1215I . . . OR10A6 390093 broad.mit.edu 36 11 7906046 7906046 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004461 exon1 c.C740A p.S247Y . . . OR10A6 390093 broad.mit.edu 36 11 7906128 7906128 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004461 exon1 c.C658T p.R220X . . . OR10A6 390093 broad.mit.edu 36 11 7906454 7906454 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004461 exon1 c.A332C p.E111A . . . OR10A3 26496 broad.mit.edu 36 11 7917331 7917331 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003745 exon1 c.C313A p.L105I . . . NLRP10 338322 broad.mit.edu 36 11 7938074 7938074 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176821 exon2 c.C1661A p.S554Y . . . NLRP10 338322 broad.mit.edu 36 11 7938145 7938145 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176821 exon2 c.G1590A p.E530E . . . NLRP10 338322 broad.mit.edu 36 11 7939122 7939122 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176821 exon2 c.T613C p.Y205H . . . EIF3F 8665 broad.mit.edu 36 11 7965711 7965711 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003754 exon1 c.G236A p.G79D . . . EIF3F 8665 broad.mit.edu 36 11 7969941 7969941 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003754 exon2 c.C402A p.C134X . . . TUB 7275 broad.mit.edu 36 11 8017150 8017150 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003320 exon1 c.C154T p.R52W . . . C11orf82 220042 broad.mit.edu 36 11 82321044 82321044 + Nonsense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145018 exon6 c.T1016G p.L339X . . . RAB30 27314 broad.mit.edu 36 11 82385994 82385994 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014488 exon3 c.G13T p.D5Y . . . DLG2 1740 broad.mit.edu 36 11 83319134 83319134 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001364 exon10 c.G1066A p.D356N . . . SYTL2 54843 broad.mit.edu 36 11 85086746 85086746 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206929 exon10 c.G703T p.E235X . . . SYTL2 54843 broad.mit.edu 36 11 85114770 85114770 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206927 exon1 c.G378T p.K126N . . . SYTL2 54843 broad.mit.edu 36 11 85137075 85137075 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032943 exon3 c.G141T p.K47N . . . SYTL2 54843 broad.mit.edu 36 11 85146332 85146332 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032943 exon2 c.G85A p.E29K . . . CCDC83 220047 broad.mit.edu 36 11 85284014 85284014 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173556 exon6 c.G542T p.R181I . . . CCDC83 220047 broad.mit.edu 36 11 85299999 85299999 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173556 exon8 c.G700T p.E234X . . . CCDC83 220047 broad.mit.edu 36 11 85304760 85304760 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173556 exon11 c.G1009A p.D337N . . . CCDC81 60494 broad.mit.edu 36 11 85789386 85789386 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021827 exon6 c.G506T p.R169I . . . FZD4 8322 broad.mit.edu 36 11 86340712 86340712 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012193 exon2 c.C734A p.S245Y . . . TMEM135 65084 broad.mit.edu 36 11 86460292 86460292 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168724 exon3 c.G349T p.E117X . . . CTSC 1075 broad.mit.edu 36 11 87685229 87685229 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001814 exon3 c.G460A p.A154T . . . GRM5 2915 broad.mit.edu 36 11 87977641 87977641 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000842 exon5 c.G1287T p.M429I . . . NOX4 50507 broad.mit.edu 36 11 88775255 88775255 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016931 exon9 c.G733T p.E245X . . . NOX4 50507 broad.mit.edu 36 11 88813524 88813524 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016931 exon6 c.G455T p.R152I . . . C11orf17 56672 broad.mit.edu 36 11 8892985 8892985 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020642 exon4 c.A340G p.T114A . . . C11orf16 56673 broad.mit.edu 36 11 8899439 8899439 + Nonstop_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020643 exon6 c.G1404T p.X468Y . . . ASCL3 56676 broad.mit.edu 36 11 8915972 8915972 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020646 exon2 c.C313T p.R105W . . . TRIM49 57093 broad.mit.edu 36 11 89177086 89177086 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020358 exon3 c.A200G p.N67S . . . SCUBE2 57758 broad.mit.edu 36 11 9005542 9005542 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020974 exon19 c.G2475T p.E825D . . . SCUBE2 57758 broad.mit.edu 36 11 9057560 9057560 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020974 exon3 c.G329A p.R110H . . . FAT3 120114 broad.mit.edu 36 11 91724980 91724980 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon1 c.C54A p.L18L . . . FAT3 120114 broad.mit.edu 36 11 91726050 91726050 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon1 c.G1124T p.R375I . . . FAT3 120114 broad.mit.edu 36 11 91726625 91726625 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon1 c.C1699T p.R567X . . . FAT3 120114 broad.mit.edu 36 11 91726779 91726779 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon1 c.G1853A p.G618E . . . FAT3 120114 broad.mit.edu 36 11 92137794 92137794 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon5 c.C4086T p.F1362F . . . FAT3 120114 broad.mit.edu 36 11 92146939 92146939 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon6 c.C4280T p.S1427F . . . FAT3 120114 broad.mit.edu 36 11 92170709 92170709 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon9 c.G4882T p.E1628X . . . FAT3 120114 broad.mit.edu 36 11 92172267 92172267 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon9 c.C6440T p.S2147F . . . FAT3 120114 broad.mit.edu 36 11 92263492 92263492 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008781 exon25 c.C13239A p.F4413L . . . SLC36A4 120103 broad.mit.edu 36 11 92521543 92521543 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152313 exon11 c.G1323A p.S441S . . . TMEM41B 440026 broad.mit.edu 36 11 9264581 9264581 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015012 exon6 c.C703A p.L235I . . . HEPHL1 341208 broad.mit.edu 36 11 93440363 93440363 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098672 exon5 c.G862T p.E288X . . . HEPHL1 341208 broad.mit.edu 36 11 93455346 93455346 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098672 exon10 c.G1831T p.E611X . . . HEPHL1 341208 broad.mit.edu 36 11 93466333 93466333 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098672 exon13 c.G2313A p.M771I . . . HEPHL1 341208 broad.mit.edu 36 11 93483733 93483733 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098672 exon18 c.G3062A p.R1021Q . . . MRE11A 4361 broad.mit.edu 36 11 93792972 93792972 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005591 exon20 c.G2094T p.M698I . . . MRE11A 4361 broad.mit.edu 36 11 93810013 93810013 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005591 exon17 c.T1904C p.V635A . . . MRE11A 4361 broad.mit.edu 36 11 93829148 93829148 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005591 exon14 c.G1505A p.R502H . . . MRE11A 4361 broad.mit.edu 36 11 93863742 93863742 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005591 exon3 c.G58T p.D20Y . . . ANKRD49 54851 broad.mit.edu 36 11 93871273 93871273 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017704 exon3 c.C647G p.A216G . . . PIWIL4 143689 broad.mit.edu 36 11 93970673 93970673 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152431 exon11 c.A1324G p.I442V . . . IPO7 10527 broad.mit.edu 36 11 9416233 9416233 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006391 exon22 c.A2520G p.G840G . . . AMOTL1 154810 broad.mit.edu 36 11 94172690 94172690 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_130847 exon3 c.G686A p.R229Q . . . AMOTL1 154810 broad.mit.edu 36 11 94242274 94242274 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_130847 exon12 c.G2752A p.A918T . . . ZNF143 7702 broad.mit.edu 36 11 9494332 9494332 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003442 exon14 c.A1533G p.I511M . . . CEP57 9702 broad.mit.edu 36 11 95202126 95202126 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014679 exon10 c.C1255T p.R419X . . . MTMR2 8898 broad.mit.edu 36 11 95217775 95217775 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201278 exon13 c.G1160A p.R387Q . . . CCDC82 79780 broad.mit.edu 36 11 95757477 95757477 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024725 exon4 c.G83A p.R28Q . . . JRKL 8690 broad.mit.edu 36 11 95764678 95764678 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003772 exon1 c.C1217A p.S406Y . . . AP2A2 161 broad.mit.edu 36 11 975550 975550 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012305 exon8 c.C930T p.F310F . . . SBF2 81846 broad.mit.edu 36 11 9763300 9763300 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030962 exon37 c.C5179T p.R1727X . . . SBF2 81846 broad.mit.edu 36 11 9810473 9810473 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030962 exon27 c.C3526T p.R1176X . . . CNTN5 53942 broad.mit.edu 36 11 99332902 99332902 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175566 exon7 c.G606A p.T202T . . . SLC35F1 222553 broad.mit.edu 36 6 118713072 118713072 + Frame_Shift_Del DEL T - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001029858 exon7 c.880delT p.F294fs . . . USP45 85015 broad.mit.edu 36 6 100001043 100001043 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080481 exon14 c.C1326T p.D442D . . . MCHR2 84539 broad.mit.edu 36 6 100510613 100510613 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040179 exon2 c.C132A p.I44I . . . MCHR2 84539 broad.mit.edu 36 6 100510705 100510705 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040179 exon2 c.G40A p.E14K . . . ASCC3 10973 broad.mit.edu 36 6 101321169 101321169 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006828 exon10 c.G1730A p.R577Q . . . ASCC3 10973 broad.mit.edu 36 6 101355086 101355086 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006828 exon6 c.T938A p.I313N . . . ASCC3 10973 broad.mit.edu 36 6 101403213 101403213 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006828 exon4 c.A333C p.E111D . . . GRIK2 2898 broad.mit.edu 36 6 102180994 102180994 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021956 exon3 c.A330G p.S110S . . . HACE1 57531 broad.mit.edu 36 6 105339858 105339858 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020771 exon12 c.T1104C p.D368D . . . HACE1 57531 broad.mit.edu 36 6 105365886 105365886 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020771 exon7 c.G610A p.A204T . . . HACE1 57531 broad.mit.edu 36 6 105397860 105397860 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020771 exon5 c.G333T p.K111N . . . LIN28B 389421 broad.mit.edu 36 6 105633322 105633322 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004317 exon4 c.C724T p.P242S . . . BVES 11149 broad.mit.edu 36 6 105671402 105671402 + Nonsense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007073 exon6 c.T683G p.L228X . . . PREP 5550 broad.mit.edu 36 6 105840065 105840065 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002726 exon12 c.C1538T p.T513M . . . GCNT2 2651 broad.mit.edu 36 6 10637368 10637368 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145649 exon3 c.C238T p.R80X . . . GCNT2 2651 broad.mit.edu 36 6 10637958 10637958 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145649 exon3 c.C828T p.F276F . . . GCNT2 2651 broad.mit.edu 36 6 10664708 10664708 + Intron SNP C T T rs56108949 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001491 exon1 c.C66T p.F22F . . . PRDM1 639 broad.mit.edu 36 6 106661878 106661878 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198 exon7 c.G2302T p.E768X . . . ATG5 9474 broad.mit.edu 36 6 106834277 106834277 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004849 exon5 c.G430T p.E144X . . . GCNT2 2651 broad.mit.edu 36 6 10694681 10694681 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145655 exon1 c.C473A p.S158Y . . . AIM1 202 broad.mit.edu 36 6 107073871 107073871 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001624 exon2 c.C871T p.R291X . . . AIM1 202 broad.mit.edu 36 6 107075221 107075221 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001624 exon2 c.G2221T p.E741X . . . RTN4IP1 84816 broad.mit.edu 36 6 107126645 107126645 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032730 exon9 c.T1110C p.F370F . . . QRSL1 55278 broad.mit.edu 36 6 107220484 107220484 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018292 exon11 c.C1501T p.P501S . . . PDSS2 57107 broad.mit.edu 36 6 107582660 107582660 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020381 exon8 c.C1056A p.I352I . . . SCML4 256380 broad.mit.edu 36 6 108172947 108172947 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198081 exon5 c.G581A p.R194Q . . . SNX3 8724 broad.mit.edu 36 6 108642425 108642425 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152827 exon2 c.G257T p.R86I . . . LACE1 246269 broad.mit.edu 36 6 108829945 108829945 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145315 exon7 c.C801A p.V267V . . . MAK 4117 broad.mit.edu 36 6 10899903 10899903 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005906 exon9 c.C1307A p.S436Y . . . ARMC2 84071 broad.mit.edu 36 6 109327637 109327637 + Missense_Mutation SNP G A A rs6911885 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032131 exon7 c.G796A p.E266K . . . ARMC2 84071 broad.mit.edu 36 6 109338867 109338867 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032131 exon9 c.G1096T p.D366Y . . . ARMC2 84071 broad.mit.edu 36 6 109401358 109401358 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032131 exon18 c.G2552A p.R851Q . . . GCM2 9247 broad.mit.edu 36 6 10982307 10982307 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004752 exon5 c.G1428T p.E476D . . . GCM2 9247 broad.mit.edu 36 6 10984718 10984718 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004752 exon3 c.C402T p.S134S . . . PPIL6 285755 broad.mit.edu 36 6 109859198 109859198 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111298 exon3 c.C275A p.S92Y . . . ZBTB24 9841 broad.mit.edu 36 6 109895550 109895550 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014797 exon6 c.C1369T p.R457X . . . AKD1 221264 broad.mit.edu 36 6 110069499 110069499 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145128 exon10 c.G848A p.R283Q . . . AKD1 221264 broad.mit.edu 36 6 110103610 110103610 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145128 exon2 c.C32A p.P11H . . . SYCP2L 221711 broad.mit.edu 36 6 11020934 11020934 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040274 exon13 c.G961A p.D321N . . . GPR6 2830 broad.mit.edu 36 6 110408070 110408070 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005284 exon1 c.T1062G p.F354L . . . WASF1 8936 broad.mit.edu 36 6 110536509 110536509 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024934 exon5 c.G337A p.D113N . . . SYCP2L 221711 broad.mit.edu 36 6 11064414 11064414 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040274 exon25 c.C2116A p.L706I . . . SLC22A16 85413 broad.mit.edu 36 6 110870239 110870239 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033125 exon4 c.G1084A p.V362I . . . CDK19 23097 broad.mit.edu 36 6 111054928 111054928 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015076 exon7 c.C760T p.R254W . . . CDK19 23097 broad.mit.edu 36 6 111054999 111054999 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015076 exon7 c.C689T p.S230L . . . AMD1 262 broad.mit.edu 36 6 111316844 111316844 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001634 exon3 c.C289A p.L97I . . . RPF2 84154 broad.mit.edu 36 6 111412950 111412950 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032194 exon2 c.G72A p.P24P . . . REV3L 5980 broad.mit.edu 36 6 111779588 111779588 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002912 exon19 c.G7284T p.M2428I . . . REV3L 5980 broad.mit.edu 36 6 111795234 111795234 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002912 exon14 c.G6450T p.E2150D . . . REV3L 5980 broad.mit.edu 36 6 111800586 111800586 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002912 exon13 c.G5665T p.E1889X . . . REV3L 5980 broad.mit.edu 36 6 111801717 111801717 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002912 exon13 c.C4534T p.R1512X . . . REV3L 5980 broad.mit.edu 36 6 111802670 111802670 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002912 exon13 c.G3581A p.R1194Q . . . REV3L 5980 broad.mit.edu 36 6 111804376 111804376 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002912 exon13 c.G1875T p.M625I . . . REV3L 5980 broad.mit.edu 36 6 111809299 111809299 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002912 exon10 c.G1138T p.E380X . . . REV3L 5980 broad.mit.edu 36 6 111815904 111815904 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002912 exon8 c.T940G p.F314V . . . TRAF3IP2 10758 broad.mit.edu 36 6 112019808 112019808 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147686 exon2 c.G175T p.D59Y . . . ERVFRDE1 405754 broad.mit.edu 36 6 11213301 11213301 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207582 exon2 c.C229T p.R77X . . . FYN 2534 broad.mit.edu 36 6 112147792 112147792 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002037 exon4 c.C156A p.N52K . . . WISP3 8838 broad.mit.edu 36 6 112497467 112497467 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198239 exon5 c.G1070T p.R357I . . . TUBE1 51175 broad.mit.edu 36 6 112500745 112500745 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016262 exon10 c.C1003T p.R335W . . . TUBE1 51175 broad.mit.edu 36 6 112503930 112503930 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016262 exon8 c.C715A p.L239M . . . LAMA4 3910 broad.mit.edu 36 6 112564058 112564058 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105207 exon25 c.C3353T p.T1118M . . . LAMA4 3910 broad.mit.edu 36 6 112586771 112586771 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105207 exon14 c.C1652T p.A551V . . . RFPL4B 442247 broad.mit.edu 36 6 112778158 112778158 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013734 exon3 c.G555T p.K185N . . . NEDD9 4739 broad.mit.edu 36 6 11321892 11321892 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006403 exon2 c.G67A p.A23T . . . HS3ST5 222537 broad.mit.edu 36 6 114485255 114485255 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153612 exon2 c.C900T p.I300I . . . HS3ST5 222537 broad.mit.edu 36 6 114485399 114485399 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153612 exon2 c.C756A p.V252V . . . TSPYL1 7259 broad.mit.edu 36 6 116706768 116706768 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003309 exon1 c.T919G p.L307V . . . TMEM170B 100113407 broad.mit.edu 36 6 11673886 11673886 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100829 exon2 c.G99T p.E33D . . . DSE 29940 broad.mit.edu 36 6 116827181 116827181 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080976 exon2 c.C75T p.T25T . . . TMEM170B 100113407 broad.mit.edu 36 6 11683703 11683703 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100829 exon3 c.G322A p.E108K . . . DSE 29940 broad.mit.edu 36 6 116854564 116854564 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080976 exon3 c.C551A p.A184D . . . FAM26F 441168 broad.mit.edu 36 6 116891344 116891344 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010919 exon3 c.C731T p.S244L . . . RWDD1 51389 broad.mit.edu 36 6 116999508 116999508 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015952 exon1 c.A70G p.T24A . . . RSPH4A 345895 broad.mit.edu 36 6 117044815 117044815 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161664 exon1 c.G336T p.R112S . . . RSPH4A 345895 broad.mit.edu 36 6 117056064 117056064 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161664 exon3 c.G1501T p.G501X . . . KPNA5 3841 broad.mit.edu 36 6 117129958 117129958 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002269 exon6 c.G519A p.P173P . . . GPRC6A 222545 broad.mit.edu 36 6 117237231 117237231 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148963 exon2 c.C437A p.S146Y . . . GPRC6A 222545 broad.mit.edu 36 6 117256827 117256827 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148963 exon1 c.C43A p.L15I . . . RFX6 222546 broad.mit.edu 36 6 117338808 117338808 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173560 exon7 c.A690C p.K230N . . . RFX6 222546 broad.mit.edu 36 6 117356813 117356813 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173560 exon18 c.G2597A p.R866Q . . . ROS1 6098 broad.mit.edu 36 6 117736668 117736668 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002944 exon41 c.G6551T p.R2184I . . . ROS1 6098 broad.mit.edu 36 6 117765091 117765091 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002944 exon31 c.G5185T p.V1729L . . . ROS1 6098 broad.mit.edu 36 6 117770270 117770270 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002944 exon28 c.A4655C p.K1552T . . . ROS1 6098 broad.mit.edu 36 6 117787824 117787824 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002944 exon23 c.G3489T p.K1163N . . . GOPC 57120 broad.mit.edu 36 6 118003115 118003115 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020399 exon4 c.C568T p.R190C . . . C6orf105 84830 broad.mit.edu 36 6 11843828 11843828 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143948 exon5 c.A519G p.G173G . . . SLC35F1 222553 broad.mit.edu 36 6 118582318 118582318 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029858 exon2 c.T191C p.V64A . . . SLC35F1 222553 broad.mit.edu 36 6 118703401 118703401 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029858 exon5 c.C724T p.R242X . . . PLN 5350 broad.mit.edu 36 6 118986901 118986901 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002667 exon2 c.C124T p.L42F . . . FAM184A 79632 broad.mit.edu 36 6 119337912 119337912 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024581 exon13 c.G2744A p.R915Q . . . FAM184A 79632 broad.mit.edu 36 6 119343100 119343100 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024581 exon10 c.G2203T p.E735X . . . FAM184A 79632 broad.mit.edu 36 6 119365801 119365801 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024581 exon9 c.G2050T p.D684Y . . . FAM184A 79632 broad.mit.edu 36 6 119379789 119379789 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024581 exon5 c.G1352A p.R451K . . . MAN1A1 4121 broad.mit.edu 36 6 119552534 119552534 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005907 exon10 c.C1540T p.R514X . . . C6orf170 221322 broad.mit.edu 36 6 121453718 121453718 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152730 exon31 c.G3634T p.D1212Y . . . C6orf170 221322 broad.mit.edu 36 6 121468977 121468977 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152730 exon30 c.G3356A p.G1119D . . . C6orf170 221322 broad.mit.edu 36 6 121618184 121618184 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152730 exon17 c.A2007G p.E669E . . . C6orf170 221322 broad.mit.edu 36 6 121619128 121619128 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152730 exon16 c.C1736A p.P579H . . . C6orf170 221322 broad.mit.edu 36 6 121666516 121666516 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152730 exon9 c.G1026A p.P342P . . . C6orf170 221322 broad.mit.edu 36 6 121684496 121684496 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152730 exon2 c.G299T p.R100I . . . GJA1 2697 broad.mit.edu 36 6 121809994 121809994 + Missense_Mutation SNP G A A rs2227875 by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000165 exon2 c.G302A p.R101Q . . . GJA1 2697 broad.mit.edu 36 6 121810239 121810239 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000165 exon2 c.G547A p.A183T . . . GJA1 2697 broad.mit.edu 36 6 121810367 121810367 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000165 exon2 c.C675A p.I225I . . . GJA1 2697 broad.mit.edu 36 6 121810710 121810710 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000165 exon2 c.G1018T p.D340Y . . . HIVEP1 3096 broad.mit.edu 36 6 12229636 12229636 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_002114 exon4 c.T1622C p.V541A . . . HIVEP1 3096 broad.mit.edu 36 6 12230751 12230751 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002114 exon4 c.C2737A p.L913I . . . HIVEP1 3096 broad.mit.edu 36 6 12232849 12232849 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002114 exon4 c.C4835T p.S1612L . . . HIVEP1 3096 broad.mit.edu 36 6 12269699 12269699 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002114 exon8 c.C6529T p.L2177F . . . SERINC1 57515 broad.mit.edu 36 6 122816630 122816630 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020755 exon5 c.G573A p.S191S . . . SMPDL3A 10924 broad.mit.edu 36 6 123167828 123167828 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006714 exon6 c.A814C p.N272H . . . CLVS2 134829 broad.mit.edu 36 6 123374003 123374003 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010852 exon3 c.G564T p.Q188H . . . TRDN 10345 broad.mit.edu 36 6 123581473 123581473 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006073 exon41 c.C2162A p.S721Y . . . HEY2 23493 broad.mit.edu 36 6 126122096 126122096 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012259 exon5 c.C469A p.L157I . . . NCOA7 135112 broad.mit.edu 36 6 126251859 126251859 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199620 exon11 c.C966A p.F322L . . . NCOA7 135112 broad.mit.edu 36 6 126252677 126252677 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199620 exon11 c.C1784A p.S595Y . . . HINT3 135114 broad.mit.edu 36 6 126337791 126337791 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138571 exon4 c.C495A p.V165V . . . TRMT11 60487 broad.mit.edu 36 6 126374246 126374246 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031712 exon9 c.C915A p.I305I . . . CENPW 387103 broad.mit.edu 36 6 126709109 126709109 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012507 exon2 c.G192A p.A64A . . . KIAA0408 9729 broad.mit.edu 36 6 127809817 127809817 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014702 exon5 c.G1340A p.R447K . . . KIAA0408 9729 broad.mit.edu 36 6 127809908 127809908 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014702 exon5 c.G1249A p.E417K . . . KIAA0408 9729 broad.mit.edu 36 6 127812682 127812682 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014702 exon4 c.C556T p.R186X . . . C6orf174 387104 broad.mit.edu 36 6 127838773 127838773 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001012279 exon6 c.G2091T p.K697N . . . C6orf174 387104 broad.mit.edu 36 6 127877835 127877835 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012279 exon3 c.C1152A p.F384L . . . THEMIS 387357 broad.mit.edu 36 6 128192318 128192318 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010923 exon3 c.G705T p.M235I . . . THEMIS 387357 broad.mit.edu 36 6 128192484 128192484 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010923 exon3 c.G539A p.R180H . . . THEMIS 387357 broad.mit.edu 36 6 128217979 128217979 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010923 exon2 c.G139T p.E47X . . . LAMA2 3908 broad.mit.edu 36 6 129754392 129754392 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079823 exon36 c.G5135T p.R1712I . . . LAMA2 3908 broad.mit.edu 36 6 129854843 129854843 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079823 exon56 c.A7991C p.E2664A . . . LAMA2 3908 broad.mit.edu 36 6 129866097 129866097 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079823 exon59 c.C8514A p.I2838I . . . ARHGAP18 93663 broad.mit.edu 36 6 130004782 130004782 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033515 exon2 c.G188A p.R63Q . . . TMEM200A 114801 broad.mit.edu 36 6 130804321 130804321 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052913 exon2 c.C1061T p.S354L . . . ARG1 383 broad.mit.edu 36 6 131936127 131936127 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000045 exon1 c.G12A p.K4K . . . MED23 9439 broad.mit.edu 36 6 131955233 131955233 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015979 exon26 c.C3477A p.I1159I . . . MED23 9439 broad.mit.edu 36 6 131957052 131957052 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015979 exon24 c.C3130T p.R1044X . . . MED23 9439 broad.mit.edu 36 6 131959363 131959363 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015979 exon22 c.G2784T p.M928I . . . MED23 9439 broad.mit.edu 36 6 131981319 131981319 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015979 exon9 c.C701T p.S234L . . . ENPP3 5169 broad.mit.edu 36 6 132037938 132037938 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005021 exon9 c.G788A p.G263D . . . ENPP1 5167 broad.mit.edu 36 6 132221580 132221580 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006208 exon7 c.C795T p.T265T . . . MOXD1 26002 broad.mit.edu 36 6 132660048 132660048 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015529 exon12 c.C1779A p.F593L . . . MOXD1 26002 broad.mit.edu 36 6 132660620 132660620 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015529 exon11 c.C1676T p.S559L . . . MOXD1 26002 broad.mit.edu 36 6 132683496 132683496 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015529 exon9 c.C1330T p.R444C . . . MOXD1 26002 broad.mit.edu 36 6 132737593 132737593 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015529 exon2 c.C281T p.A94V . . . TAAR9 134860 broad.mit.edu 36 6 132902003 132902003 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175057 exon1 c.G882T p.E294D . . . TAAR9 134860 broad.mit.edu 36 6 132902146 132902146 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175057 exon1 c.C1025A p.S342Y . . . TAAR8 83551 broad.mit.edu 36 6 132916456 132916456 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_053278 exon1 c.C932T p.A311V . . . TAAR6 319100 broad.mit.edu 36 6 132933390 132933390 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175067 exon1 c.C237A p.F79L . . . TAAR6 319100 broad.mit.edu 36 6 132933843 132933843 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175067 exon1 c.G690T p.K230N . . . TAAR1 134864 broad.mit.edu 36 6 133008801 133008801 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138327 exon1 c.C35T p.S12F . . . VNN1 8876 broad.mit.edu 36 6 133046041 133046041 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004666 exon7 c.C1473T p.G491G . . . VNN2 8875 broad.mit.edu 36 6 133114279 133114279 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004665 exon5 c.C898A p.L300I . . . EYA4 2070 broad.mit.edu 36 6 133809568 133809568 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172103 exon4 c.C191A p.T64N . . . EYA4 2070 broad.mit.edu 36 6 133868976 133868976 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172103 exon13 c.G1162T p.E388X . . . TBC1D7 51256 broad.mit.edu 36 6 13414683 13414683 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143965 exon7 c.G721A p.E241K . . . SLC2A12 154091 broad.mit.edu 36 6 134369740 134369740 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145176 exon3 c.C1470A p.I490I . . . SGK1 6446 broad.mit.edu 36 6 134533726 134533726 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143676 exon13 c.C1344A p.V448V . . . SGK1 6446 broad.mit.edu 36 6 134540575 134540575 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143677 exon1 c.G79A p.A27T . . . MYB 4602 broad.mit.edu 36 6 135553159 135553159 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161657 exon5 c.G508A p.A170T . . . AHI1 54806 broad.mit.edu 36 6 135663340 135663340 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017651 exon26 c.C3476A p.S1159Y . . . AHI1 54806 broad.mit.edu 36 6 135820373 135820373 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017651 exon8 c.T1103G p.I368S . . . AHI1 54806 broad.mit.edu 36 6 135853494 135853494 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017651 exon4 c.A95C p.K32T . . . BCLAF1 9774 broad.mit.edu 36 6 136631064 136631064 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014739 exon10 c.G2326T p.E776X . . . BCLAF1 9774 broad.mit.edu 36 6 136639227 136639227 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014739 exon5 c.G1129T p.D377Y . . . MAP7 9053 broad.mit.edu 36 6 136728667 136728667 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198614 exon11 c.A1238C p.K413T . . . MAP3K5 4217 broad.mit.edu 36 6 137000204 137000204 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005923 exon14 c.G1968T p.E656D . . . SIRT5 23408 broad.mit.edu 36 6 13712693 13712693 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031244 exon10 c.G864T p.L288F . . . IL20RA 53832 broad.mit.edu 36 6 137365058 137365058 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014432 exon7 c.G992T p.G331V . . . IFNGR1 3459 broad.mit.edu 36 6 137567218 137567218 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000416 exon4 c.G490A p.E164K . . . KIAA1244 57221 broad.mit.edu 36 6 138618519 138618519 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020340 exon10 c.G1024A p.V342M . . . KIAA1244 57221 broad.mit.edu 36 6 138626274 138626274 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020340 exon12 c.G1961A p.R654Q . . . KIAA1244 57221 broad.mit.edu 36 6 138676727 138676727 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020340 exon26 c.G4303T p.D1435Y . . . KIAA1244 57221 broad.mit.edu 36 6 138697981 138697981 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020340 exon33 c.T6305G p.L2102R . . . HEBP2 23593 broad.mit.edu 36 6 138775747 138775747 + Nonsense_Mutation SNP G T T rs34750897 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014320 exon4 c.G457T p.E153X . . . CCDC90A 63933 broad.mit.edu 36 6 13900158 13900158 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031713 exon8 c.G955A p.E319K . . . ECT2L 345930 broad.mit.edu 36 6 139243857 139243857 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077706 exon15 c.G1736T p.R579I . . . ECT2L 345930 broad.mit.edu 36 6 139251842 139251842 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077706 exon20 c.G2395T p.E799X . . . ECT2L 345930 broad.mit.edu 36 6 139265337 139265337 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077706 exon22 c.G2595A p.K865K . . . REPS1 85021 broad.mit.edu 36 6 139271604 139271604 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031922 exon18 c.C2107T p.R703X . . . RNF182 221687 broad.mit.edu 36 6 14085486 14085486 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165032 exon4 c.G157T p.D53Y . . . GPR126 57211 broad.mit.edu 36 6 142768599 142768599 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001032394 exon14 c.G2125T p.D709Y . . . GPR126 57211 broad.mit.edu 36 6 142780158 142780158 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001032394 exon20 c.C2910A p.V970V . . . HIVEP2 3097 broad.mit.edu 36 6 143116371 143116371 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006734 exon10 c.C6907T p.R2303W . . . HIVEP2 3097 broad.mit.edu 36 6 143133651 143133651 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006734 exon5 c.T3918G p.T1306T . . . HIVEP2 3097 broad.mit.edu 36 6 143135893 143135893 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006734 exon5 c.C1676A p.S559Y . . . ADAT2 134637 broad.mit.edu 36 6 143801509 143801509 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182503 exon2 c.G112A p.E38K . . . PEX3 8504 broad.mit.edu 36 6 143821999 143821999 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003630 exon2 c.G158A p.R53Q . . . PEX3 8504 broad.mit.edu 36 6 143833847 143833847 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003630 exon5 c.C388T p.R130W . . . PHACTR2 9749 broad.mit.edu 36 6 144116636 144116636 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100165 exon4 c.C348T p.I116I . . . PHACTR2 9749 broad.mit.edu 36 6 144128269 144128269 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100165 exon5 c.C633T p.S211S . . . PLAGL1 5325 broad.mit.edu 36 6 144304897 144304897 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080955 exon6 c.A593G p.N198S . . . STX11 8676 broad.mit.edu 36 6 144549847 144549847 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003764 exon2 c.G390A p.A130A . . . STX11 8676 broad.mit.edu 36 6 144550216 144550216 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003764 exon2 c.C759T p.V253V . . . UTRN 7402 broad.mit.edu 36 6 144798924 144798924 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007124 exon9 c.C1016A p.S339Y . . . UTRN 7402 broad.mit.edu 36 6 144810136 144810136 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007124 exon14 c.C1711T p.R571X . . . UTRN 7402 broad.mit.edu 36 6 144810588 144810588 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007124 exon15 c.G1880T p.R627I . . . UTRN 7402 broad.mit.edu 36 6 144814302 144814302 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007124 exon17 c.G2176A p.E726K . . . UTRN 7402 broad.mit.edu 36 6 144825537 144825537 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007124 exon22 c.G2908T p.E970X . . . UTRN 7402 broad.mit.edu 36 6 144837496 144837496 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007124 exon24 c.A3244C p.N1082H . . . UTRN 7402 broad.mit.edu 36 6 144884971 144884971 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007124 exon39 c.G5704T p.D1902Y . . . SHPRH 257218 broad.mit.edu 36 6 146285115 146285115 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173082 exon20 c.C3794T p.T1265I . . . SHPRH 257218 broad.mit.edu 36 6 146306199 146306199 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173082 exon9 c.C2011T p.R671C . . . SHPRH 257218 broad.mit.edu 36 6 146306601 146306601 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173082 exon9 c.G1609T p.E537X . . . SHPRH 257218 broad.mit.edu 36 6 146309095 146309095 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173082 exon7 c.G1288A p.E430K . . . GRM1 2911 broad.mit.edu 36 6 146392595 146392595 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114329 exon2 c.C249T p.F83F . . . GRM1 2911 broad.mit.edu 36 6 146392805 146392805 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114329 exon2 c.G459T p.K153N . . . GRM1 2911 broad.mit.edu 36 6 146762304 146762304 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114329 exon8 c.C2436A p.I812I . . . RAB32 10981 broad.mit.edu 36 6 146917333 146917333 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006834 exon3 c.C577A p.L193I . . . STXBP5 134957 broad.mit.edu 36 6 147602099 147602099 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127715 exon4 c.G431T p.R144M . . . STXBP5 134957 broad.mit.edu 36 6 147625174 147625174 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001127715 exon6 c.G622A p.E208K . . . STXBP5 134957 broad.mit.edu 36 6 147674328 147674328 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127715 exon11 c.T1117G p.L373V . . . SASH1 23328 broad.mit.edu 36 6 148890416 148890416 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015278 exon12 c.C1419A p.V473V . . . SASH1 23328 broad.mit.edu 36 6 148906952 148906952 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015278 exon18 c.G2653T p.D885Y . . . ZC3H12D 340152 broad.mit.edu 36 6 149824738 149824738 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207360 exon3 c.G367T p.D123Y . . . KATNA1 11104 broad.mit.edu 36 6 149957955 149957955 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007044 exon10 c.C1386T p.F462F . . . LATS1 9113 broad.mit.edu 36 6 150043088 150043088 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004690 exon5 c.C2209T p.R737X . . . PCMT1 5110 broad.mit.edu 36 6 150159328 150159328 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005389 exon6 c.C677T p.A226V . . . RAET1E 135250 broad.mit.edu 36 6 150252271 150252271 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139165 exon3 c.G528A p.G176G . . . MTHFD1L 25902 broad.mit.edu 36 6 151285064 151285064 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015440 exon10 c.C1015T p.R339C . . . MTHFD1L 25902 broad.mit.edu 36 6 151372685 151372685 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015440 exon21 c.G2163T p.E721D . . . AKAP12 9590 broad.mit.edu 36 6 151714167 151714167 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005100 exon4 c.G2948T p.G983V . . . AKAP12 9590 broad.mit.edu 36 6 151714361 151714361 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005100 exon4 c.G3142A p.E1048K . . . AKAP12 9590 broad.mit.edu 36 6 151715063 151715063 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005100 exon4 c.G3844A p.E1282K . . . AKAP12 9590 broad.mit.edu 36 6 151715215 151715215 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005100 exon4 c.C3996T p.P1332P . . . ZBTB2 57621 broad.mit.edu 36 6 151736376 151736376 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020861 exon2 c.C90T p.I30I . . . C6orf97 80129 broad.mit.edu 36 6 151899255 151899255 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_025059 exon2 c.T167G p.F56C . . . C6orf97 80129 broad.mit.edu 36 6 151900893 151900893 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025059 exon3 c.G207T p.K69N . . . C6orf97 80129 broad.mit.edu 36 6 151936287 151936287 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025059 exon6 c.G1060A p.E354K . . . C6orf97 80129 broad.mit.edu 36 6 151978476 151978476 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025059 exon10 c.C1916A p.S639Y . . . SYNE1 23345 broad.mit.edu 36 6 152593426 152593426 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015293 exon30 c.G4716A p.Q1572Q . . . SYNE1 23345 broad.mit.edu 36 6 152607401 152607401 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015293 exon21 c.C3228T p.V1076V . . . SYNE1 23345 broad.mit.edu 36 6 152656866 152656866 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015293 exon9 c.C1344A p.F448L . . . SYNE1 23345 broad.mit.edu 36 6 152684156 152684156 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon83 c.G15933T p.K5311N . . . SYNE1 23345 broad.mit.edu 36 6 152684631 152684631 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon82 c.C15788A p.S5263Y . . . SYNE1 23345 broad.mit.edu 36 6 152692605 152692605 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033071 exon77 c.C14695T p.L4899F . . . SYNE1 23345 broad.mit.edu 36 6 152693661 152693661 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033071 exon77 c.C13639A p.L4547I . . . SYNE1 23345 broad.mit.edu 36 6 152716526 152716526 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033071 exon68 c.T10928G p.V3643G . . . SYNE1 23345 broad.mit.edu 36 6 152722274 152722274 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033071 exon65 c.G10333A p.E3445K . . . SYNE1 23345 broad.mit.edu 36 6 152732345 152732345 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon60 c.G9626A p.R3209H . . . SYNE1 23345 broad.mit.edu 36 6 152735891 152735891 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon59 c.C9502A p.L3168I . . . SYNE1 23345 broad.mit.edu 36 6 152739688 152739688 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon57 c.C9083T p.S3028F . . . SYNE1 23345 broad.mit.edu 36 6 152744177 152744177 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon56 c.C8687A p.S2896Y . . . SYNE1 23345 broad.mit.edu 36 6 152750077 152750077 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon54 c.C8331T p.F2777F . . . SYNE1 23345 broad.mit.edu 36 6 152865545 152865545 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon10 c.G825T p.E275D . . . SYNE1 23345 broad.mit.edu 36 6 152883298 152883298 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033071 exon5 c.G298A p.E100K . . . FBXO5 26271 broad.mit.edu 36 6 153337799 153337799 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012177 exon2 c.C754T p.R252X . . . MTRF1L 54516 broad.mit.edu 36 6 153352876 153352876 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_019041 exon7 c.A990G p.P330P . . . RGS17 26575 broad.mit.edu 36 6 153387207 153387207 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012419 exon4 c.G327T p.E109D . . . RBM16 22828 broad.mit.edu 36 6 155136850 155136850 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014892 exon2 c.G66A p.S22S . . . RBM16 22828 broad.mit.edu 36 6 155150748 155150748 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014892 exon4 c.G221A p.R74Q . . . RBM16 22828 broad.mit.edu 36 6 155183147 155183147 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014892 exon15 c.A1780G p.T594A . . . TIAM2 26230 broad.mit.edu 36 6 155500314 155500314 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012454 exon4 c.G1506T p.K502N . . . JARID2 3720 broad.mit.edu 36 6 15560382 15560382 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004973 exon4 c.C490T p.R164X . . . TIAM2 26230 broad.mit.edu 36 6 155619750 155619750 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012454 exon26 c.C4909T p.R1637X . . . NOX3 50508 broad.mit.edu 36 6 155791770 155791770 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015718 exon9 c.C995T p.S332L . . . NOX3 50508 broad.mit.edu 36 6 155817671 155817671 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015718 exon3 c.G221A p.R74Q . . . JARID2 3720 broad.mit.edu 36 6 15605157 15605157 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004973 exon7 c.C1722T p.I574I . . . JARID2 3720 broad.mit.edu 36 6 15609240 15609240 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004973 exon8 c.C2069A p.A690D . . . ARID1B 57492 broad.mit.edu 36 6 157473313 157473313 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017519 exon6 c.C2258T p.P753L . . . SNX9 51429 broad.mit.edu 36 6 158237956 158237956 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016224 exon5 c.A410C p.N137T . . . SYNJ2 8871 broad.mit.edu 36 6 158434037 158434037 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003898 exon26 c.G3657T p.E1219D . . . SERAC1 84947 broad.mit.edu 36 6 158452427 158452427 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032861 exon17 c.C1924A p.Q642K . . . TULP4 56995 broad.mit.edu 36 6 158822135 158822135 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007466 exon8 c.G1312A p.E438K . . . TULP4 56995 broad.mit.edu 36 6 158830635 158830635 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007466 exon9 c.C1514A p.S505Y . . . TULP4 56995 broad.mit.edu 36 6 158839758 158839758 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007466 exon12 c.A1940G p.K647R . . . SYTL3 94120 broad.mit.edu 36 6 159086569 159086569 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009991 exon11 c.G721T p.E241X . . . TAGAP 117289 broad.mit.edu 36 6 159377344 159377344 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_054114 exon10 c.C1699T p.R567C . . . TAGAP 117289 broad.mit.edu 36 6 159381757 159381757 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054114 exon7 c.C573T p.I191I . . . TAGAP 117289 broad.mit.edu 36 6 159382380 159382380 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054114 exon6 c.C471A p.V157V . . . FNDC1 84624 broad.mit.edu 36 6 159562709 159562709 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032532 exon6 c.G759T p.K253N . . . FNDC1 84624 broad.mit.edu 36 6 159573321 159573321 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032532 exon11 c.G1787A p.G596D . . . FNDC1 84624 broad.mit.edu 36 6 159573489 159573489 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032532 exon11 c.G1955A p.R652H . . . FNDC1 84624 broad.mit.edu 36 6 159575436 159575436 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032532 exon11 c.G3902T p.R1301M . . . FNDC1 84624 broad.mit.edu 36 6 159587977 159587977 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032532 exon15 c.T4676A p.V1559D . . . FNDC1 84624 broad.mit.edu 36 6 159602285 159602285 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032532 exon19 c.G5248A p.E1750K . . . PNLDC1 154197 broad.mit.edu 36 6 160145015 160145015 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173516 exon5 c.C244T p.L82F . . . PNLDC1 154197 broad.mit.edu 36 6 160145655 160145655 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173516 exon6 c.C424T p.R142C . . . PNLDC1 154197 broad.mit.edu 36 6 160152730 160152730 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173516 exon11 c.C828T p.Y276Y . . . PNLDC1 154197 broad.mit.edu 36 6 160160076 160160076 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173516 exon17 c.C1333A p.L445I . . . IGF2R 3482 broad.mit.edu 36 6 160373686 160373686 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000876 exon8 c.C996T p.G332G . . . IGF2R 3482 broad.mit.edu 36 6 160405875 160405875 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000876 exon29 c.G4067A p.R1356Q . . . SLC22A3 6581 broad.mit.edu 36 6 160778063 160778063 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021977 exon7 c.G1118T p.G373V . . . LPA 4018 broad.mit.edu 36 6 160872883 160872883 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005577 exon40 c.C5991T p.F1997F . . . LPA 4018 broad.mit.edu 36 6 160882137 160882137 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005577 exon36 c.C5586T p.C1862C . . . LPA 4018 broad.mit.edu 36 6 160926096 160926096 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005577 exon27 c.C4261A p.R1421R . . . LPA 4018 broad.mit.edu 36 6 160930685 160930685 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005577 exon25 c.A3837G p.G1279G . . . PLG 5340 broad.mit.edu 36 6 161057743 161057743 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000301 exon7 c.G745A p.D249N . . . AGPAT4 56895 broad.mit.edu 36 6 161507393 161507393 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020133 exon3 c.C225A p.I75I . . . PARK2 5071 broad.mit.edu 36 6 161910391 161910391 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004562 exon8 c.C919A p.L307M . . . PACRG 135138 broad.mit.edu 36 6 163655856 163655856 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080378 exon6 c.C621T p.S207S . . . QKI 9444 broad.mit.edu 36 6 163796317 163796317 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206855 exon2 c.G159T p.R53R . . . ATXN1 6310 broad.mit.edu 36 6 16436116 16436116 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000332 exon8 c.C405A p.Y135X . . . C6orf118 168090 broad.mit.edu 36 6 165633954 165633954 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144980 exon3 c.A765T p.K255N . . . PDE10A 10846 broad.mit.edu 36 6 165676874 165676874 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006661 exon20 c.C2063A p.A688D . . . PDE10A 10846 broad.mit.edu 36 6 165729806 165729806 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006661 exon15 c.G1381T p.E461X . . . RPS6KA2 6196 broad.mit.edu 36 6 166834401 166834401 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021135 exon7 c.A568G p.I190V . . . RPS6KA2 6196 broad.mit.edu 36 6 167191680 167191680 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001006932 exon2 c.G121T p.E41X . . . RNASET2 8635 broad.mit.edu 36 6 167264581 167264581 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003730 exon8 c.G508T p.D170Y . . . FGFR1OP 11116 broad.mit.edu 36 6 167367402 167367402 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194429 exon11 c.G1018T p.E340X . . . GPR31 2853 broad.mit.edu 36 6 167490734 167490734 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005299 exon1 c.C576A p.L192L . . . GPR31 2853 broad.mit.edu 36 6 167491096 167491096 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005299 exon1 c.G214A p.A72T . . . TTLL2 83887 broad.mit.edu 36 6 167672256 167672256 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031949 exon2 c.G179A p.R60H . . . TTLL2 83887 broad.mit.edu 36 6 167674229 167674229 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031949 exon3 c.A851C p.K284T . . . MLLT4 4301 broad.mit.edu 36 6 168054644 168054644 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040000 exon14 c.C1784A p.S595Y . . . MLLT4 4301 broad.mit.edu 36 6 168054970 168054970 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040000 exon15 c.C1989A p.V663V . . . MLLT4 4301 broad.mit.edu 36 6 168094742 168094742 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040000 exon29 c.C3838T p.R1280X . . . FRMD1 79981 broad.mit.edu 36 6 168207216 168207216 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001122841 exon6 c.C514A p.L172M . . . THBS2 7058 broad.mit.edu 36 6 169365325 169365325 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003247 exon19 c.C2944T p.R982C . . . THBS2 7058 broad.mit.edu 36 6 169371674 169371674 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003247 exon15 c.C2177A p.S726Y . . . THBS2 7058 broad.mit.edu 36 6 169390517 169390517 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003247 exon4 c.G529A p.E177K . . . WDR27 253769 broad.mit.edu 36 6 169804435 169804435 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182552 exon9 c.G915A p.Q305Q . . . PHF10 55274 broad.mit.edu 36 6 169847324 169847324 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018288 exon11 c.A1241G p.D414G . . . DLL1 28514 broad.mit.edu 36 6 170439345 170439345 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005618 exon4 c.C577T p.R193C . . . DLL1 28514 broad.mit.edu 36 6 170439391 170439391 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005618 exon4 c.C531T p.F177F . . . FAM120B 84498 broad.mit.edu 36 6 170468568 170468568 + Silent SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032448 exon2 c.A165T p.P55P . . . FAM120B 84498 broad.mit.edu 36 6 170509247 170509247 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032448 exon6 c.G2199A p.T733T . . . FAM120B 84498 broad.mit.edu 36 6 170539492 170539492 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032448 exon7 c.C2476A p.L826I . . . PDCD2 5134 broad.mit.edu 36 6 170728575 170728575 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002598 exon6 c.G1032A p.P344P . . . RBM24 221662 broad.mit.edu 36 6 17400120 17400120 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153020 exon3 c.G367A p.A123T . . . CAP2 10486 broad.mit.edu 36 6 17647520 17647520 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006366 exon8 c.C678A p.S226S . . . CAP2 10486 broad.mit.edu 36 6 17649316 17649316 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006366 exon9 c.A960G p.K320K . . . NUP153 9972 broad.mit.edu 36 6 17745583 17745583 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005124 exon16 c.G2244A p.P748P . . . KIF13A 63971 broad.mit.edu 36 6 17873115 17873115 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022113 exon39 c.G4623T p.R1541S . . . KIF13A 63971 broad.mit.edu 36 6 17887180 17887180 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022113 exon33 c.C4069A p.L1357M . . . KIF13A 63971 broad.mit.edu 36 6 17964327 17964327 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022113 exon5 c.G226T p.E76X . . . NHLRC1 378884 broad.mit.edu 36 6 18230573 18230573 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198586 exon1 c.G244A p.D82N . . . TPMT 7172 broad.mit.edu 36 6 18247882 18247882 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000367 exon5 c.C412A p.L138I . . . CDKAL1 54901 broad.mit.edu 36 6 21063666 21063666 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017774 exon10 c.G780A p.T260T . . . PRL 5617 broad.mit.edu 36 6 22402688 22402688 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000948 exon2 c.G133T p.D45Y . . . NRSN1 140767 broad.mit.edu 36 6 24242656 24242656 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080723 exon3 c.T122G p.I41S . . . DCDC2 51473 broad.mit.edu 36 6 24461806 24461806 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195610 exon3 c.G318T p.K106N . . . MRS2 57380 broad.mit.edu 36 6 24531151 24531151 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020662 exon10 c.G1115T p.R372I . . . GPLD1 2822 broad.mit.edu 36 6 24554015 24554015 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001503 exon19 c.G1844A p.R615Q . . . GPLD1 2822 broad.mit.edu 36 6 24564716 24564716 + Silent SNP C T T rs1139464 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001503 exon13 c.G1137A p.A379A . . . KIAA0319 9856 broad.mit.edu 36 6 24655376 24655376 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168377 exon19 c.G3032T p.R1011I . . . C6orf62 81688 broad.mit.edu 36 6 24824456 24824456 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030939 exon2 c.A205G p.K69E . . . FAM65B 9750 broad.mit.edu 36 6 24981966 24981966 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015864 exon3 c.C142T p.P48S . . . HIST1H2AA 221613 broad.mit.edu 36 6 25834520 25834520 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170745 exon1 c.G215A p.R72H . . . HIST1H2BA 255626 broad.mit.edu 36 6 25835378 25835378 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170610 exon1 c.G263A p.R88H . . . SLC17A1 6568 broad.mit.edu 36 6 25909179 25909179 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005074 exon11 c.G1187T p.G396V . . . SLC17A1 6568 broad.mit.edu 36 6 25934783 25934783 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005074 exon3 c.T92C p.V31A . . . SLC17A2 10246 broad.mit.edu 36 6 26023982 26023982 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005835 exon9 c.C1024A p.L342I . . . SLC17A2 10246 broad.mit.edu 36 6 26024964 26024964 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005835 exon8 c.C858A p.F286L . . . HIST1H4A 8359 broad.mit.edu 36 6 26130067 26130067 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003538 exon1 c.T182C p.V61A . . . HIST1H2BB 3018 broad.mit.edu 36 6 26151500 26151500 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_021062 exon1 c.A365G p.Y122C . . . BTN3A2 11118 broad.mit.edu 36 6 26478552 26478552 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001197249 exon4 c.G331A p.E111K . . . BTN3A3 10384 broad.mit.edu 36 6 26552481 26552481 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006994 exon4 c.G403A p.E135K . . . BTN1A1 696 broad.mit.edu 36 6 26610065 26610065 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001732 exon2 c.C348A p.V116V . . . ABT1 29777 broad.mit.edu 36 6 26706188 26706188 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013375 exon2 c.G309T p.K103N . . . ZNF391 346157 broad.mit.edu 36 6 27476171 27476171 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001076781 exon3 c.G43T p.E15X . . . ZNF391 346157 broad.mit.edu 36 6 27476238 27476238 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076781 exon3 c.C110A p.S37Y . . . ZNF391 346157 broad.mit.edu 36 6 27476932 27476932 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001076781 exon3 c.G804A p.Q268Q . . . ZNF391 346157 broad.mit.edu 36 6 27477075 27477075 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001076781 exon3 c.G947A p.R316Q . . . ZNF184 7738 broad.mit.edu 36 6 27527164 27527164 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007149 exon6 c.G2153T p.R718I . . . ZNF184 7738 broad.mit.edu 36 6 27527885 27527885 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007149 exon6 c.G1432T p.E478X . . . ZNF184 7738 broad.mit.edu 36 6 27528198 27528198 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007149 exon6 c.G1119T p.R373S . . . HIST1H2BM 8342 broad.mit.edu 36 6 27890990 27890990 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003521 exon1 c.A190C p.N64H . . . OR2B2 81697 broad.mit.edu 36 6 27987628 27987628 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033057 exon1 c.T449A p.I150N . . . OR2B2 81697 broad.mit.edu 36 6 27987737 27987737 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033057 exon1 c.C340A p.L114I . . . OR2B2 81697 broad.mit.edu 36 6 27987850 27987850 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033057 exon1 c.G227T p.S76I . . . ZSCAN16 80345 broad.mit.edu 36 6 28201300 28201300 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025231 exon2 c.C100T p.P34S . . . ZNF192 7745 broad.mit.edu 36 6 28229755 28229755 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006298 exon6 c.C1718A p.S573Y . . . NKAPL 222698 broad.mit.edu 36 6 28335441 28335441 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007531 exon1 c.C313T p.R105W . . . NKAPL 222698 broad.mit.edu 36 6 28335672 28335672 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001007531 exon1 c.C544T p.R182C . . . ZNF187 7741 broad.mit.edu 36 6 28352350 28352350 + Missense_Mutation SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152736 exon4 c.G533C p.C178S . . . PGBD1 84547 broad.mit.edu 36 6 28377576 28377576 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184743 exon7 c.G1966A p.E656K . . . SCAND3 114821 broad.mit.edu 36 6 28649312 28649312 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052923 exon4 c.G2333A p.R778Q . . . SCAND3 114821 broad.mit.edu 36 6 28650789 28650789 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052923 exon3 c.G1672T p.E558X . . . SCAND3 114821 broad.mit.edu 36 6 28650880 28650880 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_052923 exon3 c.T1581G p.A527A . . . SCAND3 114821 broad.mit.edu 36 6 28651095 28651095 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052923 exon3 c.G1366T p.E456X . . . SERPINB6 5269 broad.mit.edu 36 6 2899879 2899879 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195291 exon5 c.G376A p.A126T . . . OR2W1 26692 broad.mit.edu 36 6 29120488 29120488 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030903 exon1 c.C444A p.I148I . . . OR14J1 442191 broad.mit.edu 36 6 29383097 29383097 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030946 exon1 c.C652T p.R218C . . . OR5V1 81696 broad.mit.edu 36 6 29431944 29431944 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030876 exon1 c.G8T p.R3I . . . OR12D3 81797 broad.mit.edu 36 6 29450584 29450584 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030959 exon1 c.G460A p.A154T . . . OR12D3 81797 broad.mit.edu 36 6 29451038 29451038 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030959 exon1 c.G6T p.E2D . . . OR11A1 26531 broad.mit.edu 36 6 29502843 29502843 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013937 exon1 c.C555T p.F185F . . . OR2H1 26716 broad.mit.edu 36 6 29538414 29538414 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030883 exon3 c.C889T p.R297X . . . MAS1L 116511 broad.mit.edu 36 6 29562652 29562652 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052967 exon1 c.C1007T p.A336V . . . MAS1L 116511 broad.mit.edu 36 6 29563344 29563344 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052967 exon1 c.G315A p.T105T . . . MAS1L 116511 broad.mit.edu 36 6 29563542 29563542 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052967 exon1 c.G117T p.Q39H . . . GABBR1 2550 broad.mit.edu 36 6 29682655 29682655 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021904 exon17 c.G2029T p.E677X . . . GABBR1 2550 broad.mit.edu 36 6 29685077 29685077 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021904 exon14 c.G1581A p.Q527Q . . . GABBR1 2550 broad.mit.edu 36 6 29689139 29689139 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021904 exon11 c.G1240A p.A414T . . . ZFP57 346171 broad.mit.edu 36 6 29752640 29752640 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001109809 exon1 c.G120T p.K40N . . . HLA-F 3134 broad.mit.edu 36 6 29802839 29802839 + Missense_Mutation SNP C T T rs57486551 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098479 exon7 c.C1237T p.R413C . . . HLA-G 3135 broad.mit.edu 36 6 29905578 29905578 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002127 exon6 c.C902A p.S301Y . . . HLA-A 3105 broad.mit.edu 36 6 30019962 30019962 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002116 exon4 c.C704T p.A235V . . . RNF39 80352 broad.mit.edu 36 6 30151348 30151348 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025236 exon1 c.G198A p.W66X . . . TRIM10 10107 broad.mit.edu 36 6 30229988 30229988 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006778 exon7 c.C1183T p.R395W . . . TRIM10 10107 broad.mit.edu 36 6 30230233 30230233 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006778 exon7 c.C938A p.S313Y . . . ABCF1 23 broad.mit.edu 36 6 30666379 30666379 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025091 exon25 c.C2460T p.I820I . . . KIAA1949 170954 broad.mit.edu 36 6 30760867 30760867 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001134870 exon2 c.C908T p.A303V . . . KIAA1949 170954 broad.mit.edu 36 6 30761310 30761310 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001134870 exon2 c.G465T p.G155G . . . MDC1 9656 broad.mit.edu 36 6 30780696 30780696 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014641 exon10 c.G4243A p.E1415K . . . DPCR1 135656 broad.mit.edu 36 6 31028168 31028168 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080870 exon2 c.G3948T p.E1316D . . . DPCR1 135656 broad.mit.edu 36 6 31028841 31028841 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080870 exon3 c.C4150A p.L1384I . . . CDSN 1041 broad.mit.edu 36 6 31192508 31192508 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001264 exon2 c.T863A p.V288E . . . CCHCR1 54535 broad.mit.edu 36 6 31226728 31226728 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001105563 exon5 c.C844T p.R282W . . . MICB 4277 broad.mit.edu 36 6 31582882 31582882 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005931 exon4 c.C718T p.R240C . . . BAT1 7919 broad.mit.edu 36 6 31612273 31612273 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004640 exon5 c.A599C p.K200T . . . BAT1 7919 broad.mit.edu 36 6 31616280 31616280 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004640 exon2 c.G9A p.E3E . . . ATP6V1G2 534 broad.mit.edu 36 6 31621241 31621241 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138282 exon3 c.C157T p.R53C . . . TUBB2B 347733 broad.mit.edu 36 6 3169999 3169999 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178012 exon4 c.C1323T p.G441G . . . BAT2 7916 broad.mit.edu 36 6 31701563 31701563 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004638 exon8 c.C775A p.L259I . . . BAT2 7916 broad.mit.edu 36 6 31707436 31707436 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004638 exon16 c.C3007A p.L1003I . . . BAT3 7917 broad.mit.edu 36 6 31717972 31717972 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098534 exon15 c.G2123A p.G708D . . . APOM 55937 broad.mit.edu 36 6 31733841 31733841 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019101 exon6 c.A563G p.N188S . . . C6orf47 57827 broad.mit.edu 36 6 31735593 31735593 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021184 exon1 c.G111T p.E37D . . . DDAH2 23564 broad.mit.edu 36 6 31804499 31804499 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013974 exon3 c.C300T p.V100V . . . C6orf26 401251 broad.mit.edu 36 6 31839187 31839187 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039651 exon2 c.C131T p.A44V . . . C2 717 broad.mit.edu 36 6 32003525 32003525 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001145903 exon1 c.T17C p.V6A . . . C2 717 broad.mit.edu 36 6 32013124 32013124 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145903 exon6 c.C642A p.V214V . . . C2 717 broad.mit.edu 36 6 32018782 32018782 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145903 exon8 c.G891T p.K297N . . . C2 717 broad.mit.edu 36 6 32019256 32019256 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145903 exon10 c.G1144A p.D382N . . . C2 717 broad.mit.edu 36 6 32019970 32019970 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145903 exon13 c.G1494T p.K498N . . . CFB 629 broad.mit.edu 36 6 32022337 32022337 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001710 exon2 c.G273T p.K91N . . . CFB 629 broad.mit.edu 36 6 32026988 32026988 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001710 exon15 c.G1944T p.K648N . . . C4B 721 broad.mit.edu 36 6 32072223 32072223 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007293 exon28 c.G3543T p.E1181D . . . TNXB 7148 broad.mit.edu 36 6 32123667 32123667 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019105 exon30 c.C10140T p.F3380F . . . TNXB 7148 broad.mit.edu 36 6 32145397 32145397 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019105 exon15 c.G5498C p.G1833A . . . FKBPL 63943 broad.mit.edu 36 6 32204844 32204844 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022110 exon2 c.G692A p.R231Q . . . PPT2 9374 broad.mit.edu 36 6 32238665 32238665 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138717 exon9 c.G887A p.R296H . . . NOTCH4 4855 broad.mit.edu 36 6 32274796 32274796 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004557 exon24 c.C4420T p.R1474W . . . NOTCH4 4855 broad.mit.edu 36 6 32291091 32291091 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004557 exon12 c.G1911A p.Q637Q . . . NOTCH4 4855 broad.mit.edu 36 6 32292728 32292728 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004557 exon11 c.A1833A p.G611G . . . C6orf10 10665 broad.mit.edu 36 6 32368791 32368791 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006781 exon23 c.A1637T p.Y546F . . . C6orf10 10665 broad.mit.edu 36 6 32425549 32425549 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006781 exon9 c.G295T p.E99X . . . BTNL2 56244 broad.mit.edu 36 6 32472138 32472138 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019602 exon5 c.C734A p.S245Y . . . HLA-DRA 3122 broad.mit.edu 36 6 32519054 32519054 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019111 exon3 c.G443A p.R148Q . . . HLA-DRB5 3127 broad.mit.edu 36 6 32595347 32595347 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002125 exon3 c.C430A p.L144M . . . HLA-DRB1 3123 broad.mit.edu 36 6 32657534 32657534 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002124 exon3 c.T430A p.S144T . . . HLA-DQA2 3118 broad.mit.edu 36 6 32821005 32821005 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020056 exon2 c.C174A p.F58L . . . TAP2 6891 broad.mit.edu 36 6 32906511 32906511 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018833 exon8 c.G1323T p.E441D . . . TAP1 6890 broad.mit.edu 36 6 32923382 32923382 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000593 exon9 c.G1969T p.E657X . . . TAP1 6890 broad.mit.edu 36 6 32926191 32926191 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000593 exon5 c.C1312T p.R438X . . . TAP1 6890 broad.mit.edu 36 6 32927959 32927959 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000593 exon3 c.A929C p.N310T . . . HLA-DMB 3109 broad.mit.edu 36 6 33014602 33014602 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002118 exon2 c.G174T p.E58D . . . BRD2 6046 broad.mit.edu 36 6 33056348 33056348 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_005104 exon13 c.A2281G p.T761A . . . HLA-DOA 3111 broad.mit.edu 36 6 33083100 33083100 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002119 exon3 c.C579A p.H193Q . . . HLA-DPB1 3115 broad.mit.edu 36 6 33156518 33156518 + Silent SNP C T T rs41555415 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002121 exon2 c.C192T p.F64F . . . HSD17B8 7923 broad.mit.edu 36 6 33281595 33281595 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014234 exon6 c.C579A p.R193R . . . VPS52 6293 broad.mit.edu 36 6 33345293 33345293 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022553 exon5 c.T324C p.N108N . . . WDR46 9277 broad.mit.edu 36 6 33363416 33363416 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164267 exon7 c.G519T p.K173N . . . WDR46 9277 broad.mit.edu 36 6 33363729 33363729 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164267 exon6 c.G452A p.R151Q . . . SYNGAP1 8831 broad.mit.edu 36 6 33513430 33513430 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006772 exon8 c.G770T p.S257I . . . SYNGAP1 8831 broad.mit.edu 36 6 33513796 33513796 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006772 exon8 c.C1136T p.S379L . . . SYNGAP1 8831 broad.mit.edu 36 6 33519022 33519022 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006772 exon15 c.C2715A p.R905R . . . C6orf125 84300 broad.mit.edu 36 6 33777130 33777130 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032340 exon2 c.C184T p.R62X . . . IP6K3 117283 broad.mit.edu 36 6 33798749 33798749 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054111 exon6 c.G959A p.R320H . . . SNRPC 6631 broad.mit.edu 36 6 34838453 34838453 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003093 exon3 c.A155C p.K52T . . . UHRF1BP1 54887 broad.mit.edu 36 6 34910513 34910513 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017754 exon6 c.G566A p.R189Q . . . UHRF1BP1 54887 broad.mit.edu 36 6 34946672 34946672 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017754 exon18 c.G3782A p.R1261H . . . IRF4 3662 broad.mit.edu 36 6 352593 352593 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195286 exon9 c.G1348T p.E450X . . . ZNF76 7629 broad.mit.edu 36 6 35363489 35363489 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003427 exon5 c.G321T p.E107D . . . ZNF76 7629 broad.mit.edu 36 6 35367390 35367390 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003427 exon9 c.C829T p.R277C . . . RPL10A 4736 broad.mit.edu 36 6 35546348 35546348 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007104 exon6 c.C497T p.A166V . . . FKBP5 2289 broad.mit.edu 36 6 35695914 35695914 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145777 exon4 c.T366G p.I122M . . . C6orf127 340204 broad.mit.edu 36 6 35863706 35863706 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001010886 exon3 c.G307A p.A103T . . . CLPS 1208 broad.mit.edu 36 6 35873013 35873013 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001832 exon1 c.G31A p.A11T . . . LHFPL5 222662 broad.mit.edu 36 6 35881461 35881461 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182548 exon1 c.G36T p.K12N . . . SRPK1 6732 broad.mit.edu 36 6 35945410 35945410 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003137 exon11 c.C1238A p.S413Y . . . SLC26A8 116369 broad.mit.edu 36 6 36073639 36073639 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052961 exon5 c.G481A p.V161I . . . BRPF3 27154 broad.mit.edu 36 6 36276294 36276294 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015695 exon2 c.G217A p.E73K . . . BRPF3 27154 broad.mit.edu 36 6 36290050 36290050 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015695 exon8 c.C2898T p.I966I . . . KCTD20 222658 broad.mit.edu 36 6 36555452 36555452 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173562 exon5 c.G644A p.R215Q . . . STK38 11329 broad.mit.edu 36 6 36601391 36601391 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007271 exon3 c.G138T p.K46N . . . C6orf89 221477 broad.mit.edu 36 6 36995408 36995408 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152734 exon7 c.G923A p.R308Q . . . FTSJD2 23070 broad.mit.edu 36 6 37538640 37538640 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015050 exon13 c.C1383T p.F461F . . . FTSJD2 23070 broad.mit.edu 36 6 37551932 37551932 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015050 exon20 c.G2089A p.D697N . . . MDGA1 266727 broad.mit.edu 36 6 37727958 37727958 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153487 exon7 c.G1119T p.K373N . . . MDGA1 266727 broad.mit.edu 36 6 37734095 37734095 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153487 exon3 c.G286A p.E96K . . . DNAH8 1769 broad.mit.edu 36 6 38846303 38846303 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001371 exon10 c.G1103T p.R368I . . . DNAH8 1769 broad.mit.edu 36 6 38862577 38862577 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001371 exon16 c.C1803T p.F601F . . . DNAH8 1769 broad.mit.edu 36 6 38866120 38866120 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001371 exon18 c.C2091T p.V697V . . . DNAH8 1769 broad.mit.edu 36 6 38883461 38883461 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001371 exon22 c.T2597G p.F866C . . . DNAH8 1769 broad.mit.edu 36 6 38939791 38939791 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001371 exon43 c.G5824T p.E1942X . . . DNAH8 1769 broad.mit.edu 36 6 38948712 38948712 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001371 exon49 c.G6639T p.E2213D . . . DNAH8 1769 broad.mit.edu 36 6 39058142 39058142 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001371 exon84 c.G12226A p.E4076K . . . GLP1R 2740 broad.mit.edu 36 6 39132202 39132202 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002062 exon2 c.C130T p.R44C . . . GLP1R 2740 broad.mit.edu 36 6 39148698 39148698 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002062 exon6 c.G592T p.D198Y . . . KCNK5 8645 broad.mit.edu 36 6 39267237 39267237 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003740 exon5 c.G907T p.D303Y . . . KIF6 221458 broad.mit.edu 36 6 39433089 39433089 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145027 exon19 c.C2122T p.P708S . . . KIF6 221458 broad.mit.edu 36 6 39615819 39615819 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145027 exon13 c.C1583T p.P528L . . . PRPF4B 8899 broad.mit.edu 36 6 3977028 3977028 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003913 exon2 c.C278A p.S93Y . . . PRPF4B 8899 broad.mit.edu 36 6 3977159 3977159 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003913 exon2 c.T409G p.L137V . . . PRPF4B 8899 broad.mit.edu 36 6 3982800 3982800 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003913 exon3 c.G1409T p.R470I . . . PRPF4B 8899 broad.mit.edu 36 6 3986049 3986049 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003913 exon4 c.G1457A p.R486Q . . . DAAM2 23500 broad.mit.edu 36 6 39977115 39977115 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015345 exon24 c.C2868A p.F956L . . . PRPF4B 8899 broad.mit.edu 36 6 4002345 4002345 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003913 exon13 c.A2658C p.K886N . . . PRPF4B 8899 broad.mit.edu 36 6 4003967 4003967 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003913 exon14 c.C2740T p.R914X . . . C6orf146 222826 broad.mit.edu 36 6 4014219 4014219 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173563 exon7 c.G1237T p.E413X . . . C6orf146 222826 broad.mit.edu 36 6 4014598 4014598 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173563 exon7 c.G858T p.L286F . . . UNC5CL 222643 broad.mit.edu 36 6 41110600 41110600 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173561 exon2 c.C192A p.V64V . . . TREM2 54209 broad.mit.edu 36 6 41235513 41235513 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018965 exon3 c.C477A p.I159I . . . TREML4 285852 broad.mit.edu 36 6 41304524 41304524 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198153 exon2 c.C158A p.S53Y . . . PRICKLE4 29964 broad.mit.edu 36 6 41862620 41862620 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013397 exon8 c.G930T p.E310D . . . TAF8 129685 broad.mit.edu 36 6 42144299 42144299 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138572 exon7 c.G756T p.E252D . . . GUCA1A 2978 broad.mit.edu 36 6 42249398 42249398 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000409 exon3 c.G69T p.K23N . . . UBR2 23304 broad.mit.edu 36 6 42682329 42682329 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184801 exon7 c.G826T p.D276Y . . . UBR2 23304 broad.mit.edu 36 6 42708398 42708398 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015255 exon12 c.T1412G p.F471C . . . UBR2 23304 broad.mit.edu 36 6 42766793 42766793 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015255 exon47 c.T5172G p.I1724M . . . KIAA0240 23506 broad.mit.edu 36 6 42905470 42905470 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015349 exon5 c.C1421A p.S474Y . . . PEX6 5190 broad.mit.edu 36 6 43044057 43044057 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000287 exon7 c.G1637A p.R546H . . . MEA1 4201 broad.mit.edu 36 6 43088256 43088256 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014623 exon4 c.C488T p.S163L . . . RRP36 88745 broad.mit.edu 36 6 43100771 43100771 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033112 exon2 c.A201C p.Q67H . . . RRP36 88745 broad.mit.edu 36 6 43101012 43101012 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033112 exon3 c.A312G p.P104P . . . PTK7 5754 broad.mit.edu 36 6 43217394 43217394 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152880 exon10 c.C1509T p.S503S . . . PTK7 5754 broad.mit.edu 36 6 43235579 43235579 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152880 exon18 c.C2829A p.F943L . . . CUL9 23113 broad.mit.edu 36 6 43272492 43272492 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015089 exon11 c.G2717T p.R906I . . . TTBK1 84630 broad.mit.edu 36 6 43329027 43329027 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032538 exon4 c.T277C p.F93L . . . TTBK1 84630 broad.mit.edu 36 6 43330798 43330798 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032538 exon7 c.C610T p.R204C . . . TTBK1 84630 broad.mit.edu 36 6 43331497 43331497 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032538 exon9 c.G786A p.K262K . . . SLC22A7 10864 broad.mit.edu 36 6 43374446 43374446 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006672 exon1 c.C372A p.F124L . . . ZNF318 24149 broad.mit.edu 36 6 43433255 43433255 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014345 exon3 c.G775T p.G259C . . . XPO5 57510 broad.mit.edu 36 6 43629105 43629105 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020750 exon14 c.C1555T p.R519X . . . POLH 5429 broad.mit.edu 36 6 43689479 43689479 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006502 exon11 c.C1349A p.S450Y . . . RSPH9 221421 broad.mit.edu 36 6 43731394 43731394 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193341 exon3 c.C466T p.R156W . . . RSPH9 221421 broad.mit.edu 36 6 43746513 43746513 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193341 exon6 c.G732T p.E244D . . . MRPS18A 55168 broad.mit.edu 36 6 43750940 43750940 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018135 exon5 c.G423A p.P141P . . . TMEM63B 55362 broad.mit.edu 36 6 44216055 44216055 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018426 exon9 c.C691T p.R231C . . . CAPN11 11131 broad.mit.edu 36 6 44248711 44248711 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007058 exon6 c.G585T p.K195N . . . HSP90AB1 3326 broad.mit.edu 36 6 44326254 44326254 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007355 exon6 c.G897T p.E299D . . . HSP90AB1 3326 broad.mit.edu 36 6 44329302 44329302 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007355 exon12 c.G2164T p.E722X . . . RUNX2 860 broad.mit.edu 36 6 45623019 45623019 + Nonstop_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004348 exon7 c.G1523T p.X508L . . . CLIC5 53405 broad.mit.edu 36 6 46030950 46030950 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016929 exon2 c.G73A p.D25N . . . ENPP5 59084 broad.mit.edu 36 6 46243701 46243701 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021572 exon2 c.G258T p.E86D . . . CYP39A1 51302 broad.mit.edu 36 6 46626087 46626087 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016593 exon12 c.G1385A p.R462Q . . . PLA2G7 7941 broad.mit.edu 36 6 46780303 46780303 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168357 exon12 c.C1279A p.Q427K . . . GPR116 221395 broad.mit.edu 36 6 46931711 46931711 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098518 exon20 c.C3920A p.S1307Y . . . GPR116 221395 broad.mit.edu 36 6 46936428 46936428 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098518 exon16 c.A2362C p.N788H . . . GPR116 221395 broad.mit.edu 36 6 46964075 46964075 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098518 exon4 c.A284C p.N95T . . . TNFRSF21 27242 broad.mit.edu 36 6 47308540 47308540 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014452 exon6 c.G1888A p.E630K . . . GPR115 221393 broad.mit.edu 36 6 47789815 47789815 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153838 exon6 c.G875T p.S292I . . . CDYL 9425 broad.mit.edu 36 6 4880845 4880845 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143970 exon3 c.C393T p.D131D . . . CDYL 9425 broad.mit.edu 36 6 4888785 4888785 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143970 exon5 c.C732T p.F244F . . . CDYL 9425 broad.mit.edu 36 6 4888888 4888888 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001143970 exon5 c.G835T p.A279S . . . RPP40 10799 broad.mit.edu 36 6 4940409 4940409 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006638 exon8 c.C994T p.R332X . . . MUT 4594 broad.mit.edu 36 6 49527344 49527344 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000255 exon6 c.G1126T p.A376S . . . CRISP1 167 broad.mit.edu 36 6 49916595 49916595 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001131 exon6 c.C508A p.L170I . . . DEFB114 245928 broad.mit.edu 36 6 50036092 50036092 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001037499 exon2 c.C82T p.R28C . . . TFAP2D 83741 broad.mit.edu 36 6 50826908 50826908 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172238 exon7 c.C1051A p.L351I . . . TFAP2B 7021 broad.mit.edu 36 6 50899425 50899425 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003221 exon2 c.C428T p.S143L . . . TFAP2B 7021 broad.mit.edu 36 6 50904298 50904298 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003221 exon3 c.A548T p.E183V . . . TFAP2B 7021 broad.mit.edu 36 6 50911862 50911862 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003221 exon4 c.C731T p.S244L . . . PKHD1 5314 broad.mit.edu 36 6 51592078 51592078 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138694 exon67 c.G11985T p.E3995D . . . PKHD1 5314 broad.mit.edu 36 6 51631749 51631749 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138694 exon61 c.G11134A p.A3712T . . . PKHD1 5314 broad.mit.edu 36 6 51632439 51632439 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138694 exon61 c.C10444T p.R3482C . . . PKHD1 5314 broad.mit.edu 36 6 51748596 51748596 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_170724 exon54 c.G8523T p.M2841I . . . PKHD1 5314 broad.mit.edu 36 6 51748657 51748657 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon54 c.A8462G p.E2821G . . . PKHD1 5314 broad.mit.edu 36 6 51820604 51820604 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon50 c.C8035A p.L2679I . . . PKHD1 5314 broad.mit.edu 36 6 51840746 51840746 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon48 c.G7607T p.R2536I . . . PKHD1 5314 broad.mit.edu 36 6 51843384 51843384 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon47 c.A7363G p.M2455V . . . PKHD1 5314 broad.mit.edu 36 6 51885229 51885229 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon38 c.G6226T p.V2076F . . . PKHD1 5314 broad.mit.edu 36 6 51983096 51983096 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon35 c.G5721T p.E1907D . . . PKHD1 5314 broad.mit.edu 36 6 52026839 52026839 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon20 c.G1920T p.K640N . . . PKHD1 5314 broad.mit.edu 36 6 52037739 52037739 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170724 exon13 c.G949T p.D317Y . . . MCM3 4172 broad.mit.edu 36 6 52249171 52249171 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002388 exon9 c.G1228T p.E410X . . . MCM3 4172 broad.mit.edu 36 6 52254921 52254921 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002388 exon4 c.C412T p.R138C . . . EFHC1 114327 broad.mit.edu 36 6 52411178 52411178 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018100 exon3 c.G403T p.E135X . . . EFHC1 114327 broad.mit.edu 36 6 52426863 52426863 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018100 exon5 c.C735A p.F245L . . . EFHC1 114327 broad.mit.edu 36 6 52426954 52426954 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018100 exon5 c.C826T p.R276X . . . TRAM2 9697 broad.mit.edu 36 6 52508581 52508581 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012288 exon2 c.T143G p.L48R . . . GSTA3 2940 broad.mit.edu 36 6 52876444 52876444 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000847 exon3 c.A128C p.K43T . . . ICK 22858 broad.mit.edu 36 6 52984627 52984627 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016513 exon12 c.G1391T p.G464V . . . FBXO9 26268 broad.mit.edu 36 6 53066655 53066655 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012347 exon10 c.C1003A p.L335I . . . LRRC1 55227 broad.mit.edu 36 6 53877192 53877192 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018214 exon10 c.A963C p.R321S . . . TINAG 27283 broad.mit.edu 36 6 54281325 54281325 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014464 exon1 c.G18T p.K6N . . . TINAG 27283 broad.mit.edu 36 6 54362583 54362583 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014464 exon11 c.G1332T p.E444D . . . FAM83B 222584 broad.mit.edu 36 6 54900278 54900278 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010872 exon4 c.G623A p.R208Q . . . FAM83B 222584 broad.mit.edu 36 6 54913848 54913848 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010872 exon5 c.C2120A p.S707Y . . . FAM83B 222584 broad.mit.edu 36 6 54914466 54914466 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010872 exon5 c.C2738A p.T913N . . . HCRTR2 3062 broad.mit.edu 36 6 55147539 55147539 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001526 exon1 c.C195T p.F65F . . . HCRTR2 3062 broad.mit.edu 36 6 55221559 55221559 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001526 exon2 c.G387T p.V129V . . . GFRAL 389400 broad.mit.edu 36 6 55371962 55371962 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207410 exon7 c.A978C p.K326N . . . HMGCLL1 54511 broad.mit.edu 36 6 55408492 55408492 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019036 exon10 c.C1040T p.A347V . . . HMGCLL1 54511 broad.mit.edu 36 6 55468240 55468240 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019036 exon8 c.C821T p.A274V . . . BMP5 653 broad.mit.edu 36 6 55746856 55746856 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021073 exon4 c.G977A p.R326H . . . COL21A1 81578 broad.mit.edu 36 6 56143569 56143569 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030820 exon5 c.G863T p.R288I . . . COL21A1 81578 broad.mit.edu 36 6 56152428 56152428 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030820 exon3 c.G547A p.A183T . . . COL21A1 81578 broad.mit.edu 36 6 56152577 56152577 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030820 exon3 c.G398A p.R133Q . . . DST 667 broad.mit.edu 36 6 56465058 56465058 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon66 c.C12814T p.R4272X . . . DST 667 broad.mit.edu 36 6 56470756 56470756 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon62 c.G12082T p.A4028S . . . DST 667 broad.mit.edu 36 6 56524999 56524999 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon42 c.C8681A p.S2894X . . . DST 667 broad.mit.edu 36 6 56525355 56525355 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon42 c.C8325T p.F2775F . . . DST 667 broad.mit.edu 36 6 56526017 56526017 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon42 c.C7663A p.L2555I . . . DST 667 broad.mit.edu 36 6 56526176 56526176 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon42 c.T7504G p.L2502V . . . DST 667 broad.mit.edu 36 6 56551593 56551593 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon31 c.G5136A p.K1712K . . . DST 667 broad.mit.edu 36 6 56588672 56588672 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001723 exon24 c.C7552T p.R2518X . . . DST 667 broad.mit.edu 36 6 56589617 56589617 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001723 exon24 c.G6607A p.E2203K . . . DST 667 broad.mit.edu 36 6 56591383 56591383 + Intron SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001723 exon23 c.T5408G p.L1803R . . . DST 667 broad.mit.edu 36 6 56607591 56607591 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015548 exon11 c.G1695A p.P565P . . . DST 667 broad.mit.edu 36 6 56613316 56613316 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015548 exon4 c.T463C p.S155P . . . BEND6 221336 broad.mit.edu 36 6 56987919 56987919 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152731 exon4 c.G328T p.E110X . . . KIAA1586 57691 broad.mit.edu 36 6 57026148 57026148 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020931 exon4 c.G892T p.E298X . . . KIAA1586 57691 broad.mit.edu 36 6 57026585 57026585 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020931 exon4 c.T1329C p.F443F . . . ZNF451 26036 broad.mit.edu 36 6 57114198 57114198 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015555 exon8 c.G842T p.S281I . . . RAB23 51715 broad.mit.edu 36 6 57183055 57183055 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016277 exon2 c.G83A p.R28Q . . . PRIM2 5558 broad.mit.edu 36 6 57291323 57291323 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000947 exon2 c.G121T p.E41X . . . PRIM2 5558 broad.mit.edu 36 6 57580379 57580379 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000947 exon12 c.C1209A p.I403I . . . NRN1 51299 broad.mit.edu 36 6 5944313 5944313 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016588 exon3 c.C324T p.F108F . . . KHDRBS2 202559 broad.mit.edu 36 6 62746015 62746015 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152688 exon4 c.T398C p.V133A . . . PTP4A1 7803 broad.mit.edu 36 6 64346376 64346376 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003463 exon3 c.G181T p.E61X . . . PHF3 23469 broad.mit.edu 36 6 64459683 64459683 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015153 exon4 c.G2287T p.E763X . . . PHF3 23469 broad.mit.edu 36 6 64479485 64479485 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015153 exon15 c.C4042T p.R1348C . . . PHF3 23469 broad.mit.edu 36 6 64480558 64480558 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015153 exon15 c.G5115T p.E1705D . . . EYS 346007 broad.mit.edu 36 6 66261866 66261866 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198283 exon3 c.C159A p.F53L . . . BAI3 577 broad.mit.edu 36 6 69722743 69722743 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001704 exon7 c.C1302T p.G434G . . . BAI3 577 broad.mit.edu 36 6 70105545 70105545 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001704 exon25 c.C3205A p.H1069N . . . BAI3 577 broad.mit.edu 36 6 70149522 70149522 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001704 exon31 c.C4354T p.R1452W . . . LMBRD1 55788 broad.mit.edu 36 6 70468071 70468071 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018368 exon11 c.G1068A p.L356L . . . COL19A1 1310 broad.mit.edu 36 6 70904345 70904345 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001858 exon19 c.A1431G p.G477G . . . FAM135A 57579 broad.mit.edu 36 6 71292263 71292263 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001162529 exon13 c.G2755T p.D919Y . . . SMAP1 60682 broad.mit.edu 36 6 71521471 71521471 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001044305 exon3 c.G320A p.R107Q . . . RREB1 6239 broad.mit.edu 36 6 7176541 7176541 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001003700 exon10 c.G3210T p.Q1070H . . . OGFRL1 79627 broad.mit.edu 36 6 72067924 72067924 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024576 exon7 c.G807T p.E269D . . . OGFRL1 79627 broad.mit.edu 36 6 72068114 72068114 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024576 exon7 c.G997A p.A333T . . . OGFRL1 79627 broad.mit.edu 36 6 72068396 72068396 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024576 exon7 c.G1279A p.E427K . . . RIMS1 22999 broad.mit.edu 36 6 73017350 73017350 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001168409 exon9 c.A557C p.K186T . . . CAGE1 285782 broad.mit.edu 36 6 7319036 7319036 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_205864 exon4 c.G607T p.E203X . . . RIOK1 83732 broad.mit.edu 36 6 7348053 7348053 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031480 exon8 c.C691T p.R231C . . . C6orf150 115004 broad.mit.edu 36 6 74191736 74191736 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138441 exon5 c.G1504T p.E502X . . . SLC17A5 26503 broad.mit.edu 36 6 74381780 74381780 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012434 exon8 c.C1090T p.R364C . . . CD109 135228 broad.mit.edu 36 6 74578685 74578685 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133493 exon29 c.G3739A p.A1247T . . . CD109 135228 broad.mit.edu 36 6 74584943 74584943 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133493 exon31 c.A4023G p.E1341E . . . DSP 1832 broad.mit.edu 36 6 7526640 7526640 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004415 exon23 c.G5218A p.E1740K . . . COL12A1 1303 broad.mit.edu 36 6 75875529 75875529 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004370 exon52 c.G8025T p.K2675N . . . COL12A1 1303 broad.mit.edu 36 6 75891629 75891629 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004370 exon40 c.G6541A p.D2181N . . . COL12A1 1303 broad.mit.edu 36 6 75918820 75918820 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_004370 exon18 c.A3664C p.I1222L . . . COL12A1 1303 broad.mit.edu 36 6 75922796 75922796 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004370 exon15 c.G3147A p.S1049S . . . COL12A1 1303 broad.mit.edu 36 6 75932198 75932198 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004370 exon14 c.G2728T p.D910Y . . . COL12A1 1303 broad.mit.edu 36 6 75944186 75944186 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004370 exon12 c.C2350A p.P784T . . . FILIP1 27145 broad.mit.edu 36 6 76079793 76079793 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015687 exon5 c.G2475A p.R825R . . . FILIP1 27145 broad.mit.edu 36 6 76080102 76080102 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015687 exon5 c.C2166T p.A722A . . . SENP6 26054 broad.mit.edu 36 6 76433198 76433198 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015571 exon10 c.G1045T p.E349X . . . MYO6 4646 broad.mit.edu 36 6 76595045 76595045 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004999 exon4 c.A256C p.I86L . . . MYO6 4646 broad.mit.edu 36 6 76596882 76596882 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004999 exon5 c.G291T p.V97V . . . MYO6 4646 broad.mit.edu 36 6 76599372 76599372 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004999 exon6 c.A485C p.K162T . . . MYO6 4646 broad.mit.edu 36 6 76646316 76646316 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004999 exon21 c.G2137T p.E713X . . . IMPG1 3617 broad.mit.edu 36 6 76717039 76717039 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001563 exon13 c.C1784A p.S595Y . . . HTR1B 3351 broad.mit.edu 36 6 78229065 78229065 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000863 exon1 c.G775A p.D259N . . . TXNDC5 81567 broad.mit.edu 36 6 7828384 7828384 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030810 exon10 c.G1291A p.E431K . . . PHIP 55023 broad.mit.edu 36 6 79712483 79712483 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017934 exon38 c.G4584T p.K1528N . . . PHIP 55023 broad.mit.edu 36 6 79737289 79737289 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017934 exon25 c.C2925T p.V975V . . . PHIP 55023 broad.mit.edu 36 6 79785539 79785539 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017934 exon10 c.C980A p.S327Y . . . LCA5 167691 broad.mit.edu 36 6 80279936 80279936 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181714 exon4 c.G432T p.E144D . . . TTK 7272 broad.mit.edu 36 6 80774410 80774410 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001166691 exon3 c.A305C p.K102T . . . TTK 7272 broad.mit.edu 36 6 80774879 80774879 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166691 exon4 c.G420T p.K140N . . . TTK 7272 broad.mit.edu 36 6 80794438 80794438 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166691 exon13 c.A1509C p.Q503H . . . TTK 7272 broad.mit.edu 36 6 80801517 80801517 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166691 exon15 c.G1708A p.E570K . . . IBTK 25998 broad.mit.edu 36 6 82984471 82984471 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015525 exon10 c.C1351A p.L451I . . . DOPEY1 23033 broad.mit.edu 36 6 83875350 83875350 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015018 exon5 c.C323T p.S108F . . . DOPEY1 23033 broad.mit.edu 36 6 83904653 83904653 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015018 exon21 c.C4173T p.I1391I . . . RWDD2A 112611 broad.mit.edu 36 6 83962553 83962553 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033411 exon3 c.C722A p.S241Y . . . ME1 4199 broad.mit.edu 36 6 83978459 83978459 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002395 exon14 c.G1622A p.R541H . . . PRSS35 167681 broad.mit.edu 36 6 84290261 84290261 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170423 exon3 c.G382A p.D128N . . . PRSS35 167681 broad.mit.edu 36 6 84290404 84290404 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170423 exon3 c.G525T p.K175N . . . PRSS35 167681 broad.mit.edu 36 6 84290773 84290773 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001170423 exon3 c.G894A p.T298T . . . SNAP91 9892 broad.mit.edu 36 6 84360904 84360904 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014841 exon16 c.C1340A p.S447Y . . . SNAP91 9892 broad.mit.edu 36 6 84431954 84431954 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014841 exon3 c.C196T p.R66W . . . CYB5R4 51167 broad.mit.edu 36 6 84721854 84721854 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016230 exon15 c.C1465A p.L489I . . . KIAA1009 22832 broad.mit.edu 36 6 84916046 84916046 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014895 exon24 c.C3725A p.S1242Y . . . KIAA1009 22832 broad.mit.edu 36 6 84929637 84929637 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014895 exon19 c.C2457T p.F819F . . . KIAA1009 22832 broad.mit.edu 36 6 84941182 84941182 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014895 exon15 c.T2008G p.Y670D . . . KIAA1009 22832 broad.mit.edu 36 6 84982264 84982264 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014895 exon4 c.C268A p.L90I . . . KIAA1009 22832 broad.mit.edu 36 6 84992776 84992776 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014895 exon2 c.G55T p.E19X . . . TBX18 9096 broad.mit.edu 36 6 85523289 85523289 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080508 exon4 c.C617T p.S206L . . . NT5E 4907 broad.mit.edu 36 6 86251703 86251703 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002526 exon4 c.G783A p.G261G NT5E,central_nervous_system,brain,Substitution - Missense,+1 . . SNX14 57231 broad.mit.edu 36 6 86292566 86292566 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020468 exon18 c.C1945A p.L649I . . . SNX14 57231 broad.mit.edu 36 6 86309669 86309669 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020468 exon12 c.C1207A p.L403I . . . SYNCRIP 10492 broad.mit.edu 36 6 86390461 86390461 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159673 exon6 c.A461C p.K154T . . . SYNCRIP 10492 broad.mit.edu 36 6 86406951 86406951 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001159677 exon3 c.G199T p.E67X . . . HTR1E 3354 broad.mit.edu 36 6 87782023 87782023 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000865 exon2 c.C252A p.V84V . . . HTR1E 3354 broad.mit.edu 36 6 87782781 87782781 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000865 exon2 c.C1010A p.S337Y . . . ZNF292 23036 broad.mit.edu 36 6 87999779 87999779 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015021 exon5 c.T556G p.F186V . . . ZNF292 23036 broad.mit.edu 36 6 88022144 88022144 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015021 exon8 c.A2078C p.K693T . . . ZNF292 23036 broad.mit.edu 36 6 88023395 88023395 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015021 exon8 c.A3329G p.N1110S . . . ZNF292 23036 broad.mit.edu 36 6 88026444 88026444 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015021 exon8 c.G6378A p.T2126T . . . ZNF292 23036 broad.mit.edu 36 6 88027012 88027012 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015021 exon8 c.C6946T p.R2316W . . . C6orf162 57150 broad.mit.edu 36 6 88106631 88106631 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042493 exon4 c.G214T p.E72X . . . C6orf165 154313 broad.mit.edu 36 6 88197529 88197529 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031743 exon10 c.G1219A p.A407T . . . SLC35A1 10559 broad.mit.edu 36 6 88243886 88243886 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006416 exon2 c.G104T p.R35M . . . RARS2 57038 broad.mit.edu 36 6 88315039 88315039 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020320 exon6 c.C440A p.S147Y . . . ORC3 23595 broad.mit.edu 36 6 88387795 88387795 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012381 exon10 c.C992A p.S331Y . . . SPACA1 81833 broad.mit.edu 36 6 88824141 88824141 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030960 exon3 c.G358T p.D120Y . . . SPACA1 81833 broad.mit.edu 36 6 88825959 88825959 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030960 exon5 c.G544A p.E182K . . . CNR1 1268 broad.mit.edu 36 6 88910789 88910789 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160259 exon2 c.G924T p.M308I . . . CNR1 1268 broad.mit.edu 36 6 88910969 88910969 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160259 exon2 c.C744T p.A248A . . . GABRR1 2569 broad.mit.edu 36 6 89946814 89946814 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002042 exon9 c.C1062T p.F354F . . . GABRR1 2569 broad.mit.edu 36 6 89983728 89983728 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002042 exon1 c.C33A p.I11I . . . GABRR2 2570 broad.mit.edu 36 6 90034469 90034469 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002043 exon5 c.C653A p.S218Y . . . ANKRD6 22881 broad.mit.edu 36 6 90372507 90372507 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014942 exon5 c.C381T p.L127L . . . MDN1 23195 broad.mit.edu 36 6 90438708 90438708 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014611 exon82 c.T13726G p.S4576A . . . MDN1 23195 broad.mit.edu 36 6 90451342 90451342 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014611 exon71 c.C11803T p.R3935C . . . MDN1 23195 broad.mit.edu 36 6 90460543 90460543 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014611 exon62 c.C9852T p.V3284V . . . MDN1 23195 broad.mit.edu 36 6 90462845 90462845 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014611 exon60 c.C9338T p.S3113L . . . MDN1 23195 broad.mit.edu 36 6 90478617 90478617 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014611 exon49 c.G7510A p.E2504K . . . MDN1 23195 broad.mit.edu 36 6 90497298 90497298 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014611 exon35 c.A5008G p.K1670E . . . MDN1 23195 broad.mit.edu 36 6 90538036 90538036 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014611 exon15 c.G2109T p.M703I . . . MDN1 23195 broad.mit.edu 36 6 90560581 90560581 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014611 exon4 c.G621T p.K207N . . . CASP8AP2 9994 broad.mit.edu 36 6 90628636 90628636 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001137667 exon7 c.G487T p.D163Y . . . CASP8AP2 9994 broad.mit.edu 36 6 90629057 90629057 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001137667 exon7 c.C908T p.S303L . . . CASP8AP2 9994 broad.mit.edu 36 6 90634913 90634913 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001137667 exon8 c.C5183A p.S1728Y . . . GJA10 84694 broad.mit.edu 36 6 90661372 90661372 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032602 exon1 c.G464A p.R155H . . . GJA10 84694 broad.mit.edu 36 6 90662109 90662109 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032602 exon1 c.G1201T p.D401Y . . . GJA10 84694 broad.mit.edu 36 6 90662229 90662229 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032602 exon1 c.C1321T p.R441X . . . MAP3K7 6885 broad.mit.edu 36 6 91313711 91313711 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145333 exon11 c.C1197T p.I399I . . . MAP3K7 6885 broad.mit.edu 36 6 91314522 91314522 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145333 exon10 c.G1045T p.E349X . . . MAP3K7 6885 broad.mit.edu 36 6 91338171 91338171 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145333 exon2 c.A197G p.E66G . . . EPHA7 2045 broad.mit.edu 36 6 94013274 94013274 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004440 exon15 c.C2683T p.R895X . . . FUT9 10690 broad.mit.edu 36 6 96758409 96758409 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006581 exon3 c.G657A p.G219G . . . KIAA0776 23376 broad.mit.edu 36 6 97097585 97097585 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015323 exon12 c.T1374G p.S458R . . . KIAA0776 23376 broad.mit.edu 36 6 97104364 97104364 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015323 exon15 c.G1786A p.A596T . . . FHL5 9457 broad.mit.edu 36 6 97170362 97170362 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001170807 exon6 c.A848C p.D283A . . . GPR63 81491 broad.mit.edu 36 6 97353083 97353083 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143957 exon3 c.C1246T p.R416W . . . GPR63 81491 broad.mit.edu 36 6 97353622 97353622 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143957 exon3 c.A707C p.N236T . . . KLHL32 114792 broad.mit.edu 36 6 97668674 97668674 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052904 exon7 c.C922T p.R308W . . . C6orf167 253714 broad.mit.edu 36 6 97822577 97822577 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198468 exon8 c.G720A p.Q240Q . . . POU3F2 5454 broad.mit.edu 36 6 99390440 99390440 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005604 exon1 c.C970T p.L324L . . . POU3F2 5454 broad.mit.edu 36 6 99390514 99390514 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005604 exon1 c.C1044T p.I348I . . . FBXL4 26235 broad.mit.edu 36 6 99430219 99430219 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012160 exon8 c.G1495T p.E499X . . . C6orf168 84553 broad.mit.edu 36 6 99846373 99846373 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032511 exon5 c.G868A p.A290T . . . C6orf168 84553 broad.mit.edu 36 6 99897605 99897605 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032511 exon2 c.G292A p.D98N . . . SFRS18 25957 broad.mit.edu 36 6 99955810 99955810 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015491 exon11 c.T1745A p.I582K . . . MYH13 8735 broad.mit.edu 36 17 10160034 10160034 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003802 exon28 c.G3772T p.D1258Y . . . MYH13 8735 broad.mit.edu 36 17 10162966 10162966 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003802 exon27 c.G3604T p.D1202Y . . . MYH13 8735 broad.mit.edu 36 17 10171993 10171993 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003802 exon22 c.G2606A p.R869Q . . . MYH13 8735 broad.mit.edu 36 17 10184430 10184430 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003802 exon17 c.A1908G p.G636G . . . MYH13 8735 broad.mit.edu 36 17 10198796 10198796 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003802 exon11 c.G931A p.D311N . . . MYH8 4626 broad.mit.edu 36 17 10239426 10239426 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002472 exon34 c.G4711T p.V1571F . . . MYH8 4626 broad.mit.edu 36 17 10245090 10245090 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002472 exon25 c.A3252C p.E1084D . . . MYH8 4626 broad.mit.edu 36 17 10245199 10245199 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002472 exon25 c.G3143A p.R1048Q . . . MYH4 4622 broad.mit.edu 36 17 10298662 10298662 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017533 exon22 c.G2626T p.E876X . . . MYH1 4619 broad.mit.edu 36 17 10339249 10339249 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005963 exon36 c.G5280T p.K1760N . . . MYH1 4619 broad.mit.edu 36 17 10345434 10345434 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005963 exon27 c.G3456T p.E1152D . . . MYH1 4619 broad.mit.edu 36 17 10346864 10346864 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005963 exon24 c.G3027T p.Q1009H . . . MYH1 4619 broad.mit.edu 36 17 10347117 10347117 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005963 exon23 c.G2865T p.K955N . . . MYH1 4619 broad.mit.edu 36 17 10358930 10358930 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005963 exon6 c.G513T p.E171D . . . MYH1 4619 broad.mit.edu 36 17 10360492 10360492 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005963 exon3 c.G193A p.E65K . . . MYH2 4620 broad.mit.edu 36 17 10367827 10367827 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100112 exon36 c.G5275T p.E1759X . . . MYH2 4620 broad.mit.edu 36 17 10373489 10373489 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100112 exon25 c.G3152A p.R1051H . . . MYH2 4620 broad.mit.edu 36 17 10381712 10381712 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100112 exon15 c.G1582A p.E528K . . . MYH2 4620 broad.mit.edu 36 17 10384067 10384067 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100112 exon12 c.C1050A p.V350V . . . MYH3 4621 broad.mit.edu 36 17 10478101 10478101 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002470 exon31 c.G4480T p.D1494Y . . . MYH3 4621 broad.mit.edu 36 17 10482255 10482255 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002470 exon26 c.G3559A p.E1187K . . . MYH3 4621 broad.mit.edu 36 17 10484475 10484475 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002470 exon20 c.G2326T p.E776X . . . MYH3 4621 broad.mit.edu 36 17 10491455 10491455 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002470 exon8 c.G749A p.R250Q . . . SCO1 6341 broad.mit.edu 36 17 10535930 10535930 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004589 exon4 c.C639T p.I213I . . . PIRT 644139 broad.mit.edu 36 17 10669502 10669502 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001101387 exon2 c.C186T p.G62G . . . TUSC5 286753 broad.mit.edu 36 17 1145539 1145539 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_172367 exon2 c.G392A p.R131Q . . . DNAH9 1770 broad.mit.edu 36 17 11476671 11476671 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001372 exon8 c.G1561T p.D521Y . . . DNAH9 1770 broad.mit.edu 36 17 11537934 11537934 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001372 exon21 c.G4639A p.D1547N . . . DNAH9 1770 broad.mit.edu 36 17 11588970 11588970 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001372 exon31 c.G6243T p.K2081N . . . DNAH9 1770 broad.mit.edu 36 17 11666074 11666074 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001372 exon46 c.C8820A p.F2940L . . . ZNF18 7566 broad.mit.edu 36 17 11822221 11822221 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144680 exon9 c.C1428A p.F476L . . . MAP2K4 6416 broad.mit.edu 36 17 11973249 11973249 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003010 exon9 c.C960T p.V320V . . . MYOCD 93649 broad.mit.edu 36 17 12567018 12567018 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146312 exon5 c.C383A p.P128H . . . MYOCD 93649 broad.mit.edu 36 17 12607227 12607227 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146312 exon14 c.A2502G p.E834E . . . MYOCD 93649 broad.mit.edu 36 17 12607585 12607585 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146312 exon14 c.G2860A p.A954T . . . ARHGAP44 9912 broad.mit.edu 36 17 12760019 12760019 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014859 exon5 c.G353T p.R118I . . . ARHGAP44 9912 broad.mit.edu 36 17 12800726 12800726 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014859 exon15 c.C1280A p.S427X . . . INPP5K 51763 broad.mit.edu 36 17 1347998 1347998 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016532 exon8 c.C945T p.S315S SKIP,breast,NS,Substitution - Missense,-1 . . SLC43A2 124935 broad.mit.edu 36 17 1466758 1466758 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152346 exon3 c.G216T p.V72V . . . PRPF8 10594 broad.mit.edu 36 17 1531967 1531967 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006445 exon5 c.G550T p.D184Y . . . CDRT1 374286 broad.mit.edu 36 17 15433205 15433205 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006382 exon12 c.G2068T p.E690X . . . ZNF286A 57335 broad.mit.edu 36 17 15550515 15550515 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130842 exon4 c.G216T p.E72D . . . ZNF286A 57335 broad.mit.edu 36 17 15560467 15560467 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130842 exon6 c.G704T p.R235I . . . ZNF286A 57335 broad.mit.edu 36 17 15560635 15560635 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130842 exon6 c.G872T p.R291I . . . ZNF286A 57335 broad.mit.edu 36 17 15561052 15561052 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130842 exon6 c.G1289T p.R430I . . . TBC1D26 353149 broad.mit.edu 36 17 15582323 15582323 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178571 exon7 c.C284A p.S95Y . . . NCOR1 9611 broad.mit.edu 36 17 15906150 15906150 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190440 exon35 c.G5429A p.R1810Q . . . NCOR1 9611 broad.mit.edu 36 17 15924509 15924509 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001190440 exon24 c.G3386A p.R1129Q . . . NCOR1 9611 broad.mit.edu 36 17 15924659 15924659 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190440 exon23 c.A3333C p.E1111D . . . NCOR1 9611 broad.mit.edu 36 17 15983217 15983217 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190440 exon11 c.G1182T p.E394D . . . SERPINF1 5176 broad.mit.edu 36 17 1622013 1622013 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002615 exon5 c.G537T p.E179D . . . TRPV2 51393 broad.mit.edu 36 17 16264171 16264171 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016113 exon3 c.G218A p.R73Q . . . ZNF287 57336 broad.mit.edu 36 17 16397288 16397288 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020653 exon6 c.C893A p.S298X . . . ZNF624 57547 broad.mit.edu 36 17 16466488 16466488 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020787 exon6 c.T2437G p.C813G . . . CCDC144A 9720 broad.mit.edu 36 17 16555757 16555757 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014695 exon6 c.G1618T p.E540X . . . CCDC144A 9720 broad.mit.edu 36 17 16578810 16578810 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014695 exon12 c.G2500T p.E834X . . . COPS3 8533 broad.mit.edu 36 17 17108874 17108874 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003653 exon6 c.G588T p.K196N . . . COPS3 8533 broad.mit.edu 36 17 17111987 17111987 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003653 exon5 c.A378C p.Q126H . . . PEMT 10400 broad.mit.edu 36 17 17353574 17353574 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148172 exon5 c.C477T p.F159F . . . RAI1 10743 broad.mit.edu 36 17 17638732 17638732 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_030665 exon3 c.A1745C p.D582A . . . MYO15A 51168 broad.mit.edu 36 17 17975310 17975310 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016239 exon8 c.C4071T p.F1357F . . . MYO15A 51168 broad.mit.edu 36 17 17980470 17980470 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016239 exon13 c.G4611T p.E1537D . . . MYO15A 51168 broad.mit.edu 36 17 17986236 17986236 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016239 exon23 c.G5768A p.R1923H . . . MYO15A 51168 broad.mit.edu 36 17 17995175 17995175 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016239 exon38 c.G7500A p.P2500P . . . FLII 2314 broad.mit.edu 36 17 18095782 18095782 + Missense_Mutation SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002018 exon12 c.C1320G p.D440E . . . LGALS9C 654346 broad.mit.edu 36 17 18336864 18336864 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040078 exon10 c.G890A p.R297Q . . . FAM18B1 51030 broad.mit.edu 36 17 18641670 18641670 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_016078 exon4 c.A294G p.E98E . . . SLC5A10 125206 broad.mit.edu 36 17 18864464 18864464 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152351 exon15 c.G1834A p.A612T . . . MAPK7 5598 broad.mit.edu 36 17 19223725 19223725 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139033 exon3 c.C270T p.F90F . . . SLC47A1 55244 broad.mit.edu 36 17 19421381 19421381 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018242 exon17 c.C1636T p.R546X . . . SLC47A2 146802 broad.mit.edu 36 17 19550569 19550569 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001099646 exon9 c.C825T p.I275I . . . AKAP10 11216 broad.mit.edu 36 17 19802104 19802104 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007202 exon4 c.G692T p.S231I . . . SPECC1 92521 broad.mit.edu 36 17 20048530 20048530 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033555 exon2 c.G333T p.K111N . . . CCDC144NL 339184 broad.mit.edu 36 17 20739738 20739738 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004306 exon1 c.A188G p.K63R . . . TMEM11 8834 broad.mit.edu 36 17 21042246 21042246 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003876 exon2 c.G562A p.E188K . . . MAP2K3 5606 broad.mit.edu 36 17 21156146 21156146 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002756 exon10 c.G787A p.D263N . . . TSR1 55720 broad.mit.edu 36 17 2174243 2174243 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018128 exon15 c.G2412T p.E804D . . . TSR1 55720 broad.mit.edu 36 17 2183685 2183685 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018128 exon6 c.G1057A p.E353K . . . NOS2 4843 broad.mit.edu 36 17 23124353 23124353 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000625 exon13 c.G1520T p.R507I . . . NOS2 4843 broad.mit.edu 36 17 23133228 23133228 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000625 exon7 c.G662A p.R221Q . . . METT10D 79066 broad.mit.edu 36 17 2314381 2314381 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024086 exon6 c.G599A p.R200Q . . . METT10D 79066 broad.mit.edu 36 17 2327871 2327871 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024086 exon3 c.G187T p.D63Y . . . NLK 51701 broad.mit.edu 36 17 23473867 23473867 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_016231 exon2 c.T570C p.C190C . . . TNFAIP1 7126 broad.mit.edu 36 17 23693430 23693430 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021137 exon6 c.C549T p.I183I . . . POLDIP2 26073 broad.mit.edu 36 17 23704927 23704927 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015584 exon4 c.G358A p.A120T . . . VTN 7448 broad.mit.edu 36 17 23720700 23720700 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000638 exon3 c.G484A p.D162N . . . SLC13A2 9058 broad.mit.edu 36 17 23841637 23841637 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145976 exon2 c.C141A p.F47L . . . SLC13A2 9058 broad.mit.edu 36 17 23844725 23844725 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145976 exon6 c.G759T p.K253N . . . SLC13A2 9058 broad.mit.edu 36 17 23844840 23844840 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145976 exon6 c.C874A p.L292I . . . ALDOC 230 broad.mit.edu 36 17 23925235 23925235 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005165 exon7 c.G776A p.R259H . . . SPAG5 10615 broad.mit.edu 36 17 23936467 23936467 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006461 exon9 c.G1950T p.L650L . . . KIAA0100 9703 broad.mit.edu 36 17 23971698 23971698 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014680 exon29 c.G5320T p.D1774Y . . . KIAA0100 9703 broad.mit.edu 36 17 23982723 23982723 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014680 exon23 c.G4200T p.E1400D . . . KIAA0100 9703 broad.mit.edu 36 17 23985693 23985693 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014680 exon16 c.A3039G p.R1013R . . . SUPT6H 6830 broad.mit.edu 36 17 24026211 24026211 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003170 exon5 c.G442T p.E148X . . . NEK8 284086 broad.mit.edu 36 17 24085213 24085213 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178170 exon2 c.C133T p.R45W . . . C17orf63 55731 broad.mit.edu 36 17 24111001 24111001 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077498 exon3 c.G102T p.M34I . . . SEZ6 124925 broad.mit.edu 36 17 24308616 24308616 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098635 exon12 c.C2370T p.P790P . . . SEZ6 124925 broad.mit.edu 36 17 24311710 24311710 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098635 exon7 c.C1515A p.F505L . . . MYO18A 399687 broad.mit.edu 36 17 24446143 24446143 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_203318 exon29 c.G4446T p.E1482D . . . CRYBA1 1411 broad.mit.edu 36 17 24603259 24603259 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005208 exon4 c.G267A p.E89E . . . NUFIP2 57532 broad.mit.edu 36 17 24637150 24637150 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020772 exon2 c.T1988C p.V663A . . . NUFIP2 57532 broad.mit.edu 36 17 24638237 24638237 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020772 exon2 c.C901T p.R301W . . . GIT1 28964 broad.mit.edu 36 17 24930130 24930130 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001085454 exon8 c.C764A p.S255Y . . . EFCAB5 374786 broad.mit.edu 36 17 25385458 25385458 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001145053 exon8 c.C961T p.R321W . . . EFCAB5 374786 broad.mit.edu 36 17 25402309 25402309 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001145053 exon9 c.C1080A p.F360L . . . CCDC55 84081 broad.mit.edu 36 17 25535891 25535891 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032141 exon7 c.C750T p.F250F . . . BLMH 642 broad.mit.edu 36 17 25623714 25623714 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000386 exon9 c.A1019G p.D340G . . . TMIGD1 388364 broad.mit.edu 36 17 25676238 25676238 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_206832 exon4 c.T362C p.F121S . . . CPD 1362 broad.mit.edu 36 17 25774810 25774810 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199775 exon6 c.G1077T p.M359I . . . GOSR1 9527 broad.mit.edu 36 17 25841354 25841354 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007024 exon5 c.G238T p.D80Y . . . CRLF3 51379 broad.mit.edu 36 17 26135564 26135564 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015986 exon8 c.G1096T p.E366X . . . CRLF3 51379 broad.mit.edu 36 17 26144792 26144792 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015986 exon5 c.G628T p.D210Y . . . ATAD5 79915 broad.mit.edu 36 17 26185788 26185788 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024857 exon2 c.C563A p.S188Y . . . ATAD5 79915 broad.mit.edu 36 17 26185963 26185963 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024857 exon2 c.A738G p.A246A . . . ATAD5 79915 broad.mit.edu 36 17 26219487 26219487 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024857 exon12 c.G3244T p.D1082Y . . . ATAD5 79915 broad.mit.edu 36 17 26220685 26220685 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024857 exon14 c.C3502A p.L1168I . . . ATAD5 79915 broad.mit.edu 36 17 26244510 26244510 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024857 exon21 c.G4513T p.D1505Y . . . ATAD5 79915 broad.mit.edu 36 17 26245226 26245226 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024857 exon21 c.C5229T p.N1743N . . . NF1 4763 broad.mit.edu 36 17 26557441 26557442 + Nonsense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_001128147 exon12 c.1318_1319TA . . . . NF1 4763 broad.mit.edu 36 17 26612866 26612866 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000267 exon34 c.C4526A p.A1509D . . . NF1 4763 broad.mit.edu 36 17 26616469 26616469 + Nonsense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000267 exon35 c.T4758G p.Y1586X . . . UTP6 55813 broad.mit.edu 36 17 27216543 27216543 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018428 exon18 c.G1591T p.E531X . . . UTP6 55813 broad.mit.edu 36 17 27237191 27237191 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018428 exon9 c.G624A p.E208E . . . UTP6 55813 broad.mit.edu 36 17 27246112 27246112 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018428 exon3 c.G209T p.R70I . . . LRRC37B 114659 broad.mit.edu 36 17 27398933 27398933 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052888 exon9 c.G2283T p.M761I . . . RHBDL3 162494 broad.mit.edu 36 17 27649301 27649301 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138328 exon6 c.G746A p.R249Q . . . RHBDL3 162494 broad.mit.edu 36 17 27667400 27667400 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138328 exon8 c.C919T p.R307W . . . MYO1D 4642 broad.mit.edu 36 17 28118862 28118862 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015194 exon7 c.G736A p.E246K . . . RAP1GAP2 23108 broad.mit.edu 36 17 2814065 2814065 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015085 exon7 c.G445A p.E149K . . . RAP1GAP2 23108 broad.mit.edu 36 17 2830343 2830343 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015085 exon9 c.G609T p.K203N . . . SPACA3 124912 broad.mit.edu 36 17 28346780 28346780 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173847 exon2 c.G275A p.R92H . . . OR1D2 4991 broad.mit.edu 36 17 2942621 2942621 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002548 exon1 c.C420A p.L140L . . . C17orf102 400591 broad.mit.edu 36 17 29928743 29928743 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207454 exon2 c.G420A p.V140V . . . TMEM132E 124842 broad.mit.edu 36 17 29980297 29980297 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207313 exon5 c.C1029A p.V343V . . . CCT6B 10693 broad.mit.edu 36 17 30312461 30312461 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001193529 exon1 c.T65G p.V22G . . . LIG3 3980 broad.mit.edu 36 17 30334519 30334519 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_013975 exon2 c.T382A p.S128T . . . LIG3 3980 broad.mit.edu 36 17 30334608 30334608 + Silent SNP C T T rs61749869 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013975 exon2 c.C471T p.I157I . . . RAD51L3 5892 broad.mit.edu 36 17 30452478 30452478 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002878 exon9 c.G758A p.R253Q . . . SLFN11 91607 broad.mit.edu 36 17 30703623 30703623 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001104589 exon6 c.C2571A p.F857L . . . SLFN11 91607 broad.mit.edu 36 17 30704000 30704000 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001104589 exon6 c.C2194T p.R732C . . . SLFN11 91607 broad.mit.edu 36 17 30714460 30714460 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001104589 exon3 c.C480A p.I160I . . . SLFN11 91607 broad.mit.edu 36 17 30714898 30714898 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001104589 exon3 c.C42T p.Y14Y . . . SLFN12 55106 broad.mit.edu 36 17 30773368 30773368 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018042 exon2 c.G793A p.E265K . . . SLFN13 146857 broad.mit.edu 36 17 30792766 30792766 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144682 exon5 c.G1851A p.R617R . . . PEX12 5193 broad.mit.edu 36 17 30928311 30928311 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000286 exon2 c.G539A p.R180Q . . . PEX12 5193 broad.mit.edu 36 17 30928578 30928578 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000286 exon2 c.G272T p.R91I . . . AP2B1 163 broad.mit.edu 36 17 30978814 30978814 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001282 exon9 c.C1111T p.R371X . . . GAS2L2 246176 broad.mit.edu 36 17 31097338 31097338 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139285 exon6 c.G1291A p.D431N . . . C17orf66 256957 broad.mit.edu 36 17 31215626 31215626 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152781 exon5 c.C498A p.F166L . . . MYO19 80179 broad.mit.edu 36 17 31943636 31943636 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001163735 exon11 c.C766T p.P256S . . . GGNBP2 79893 broad.mit.edu 36 17 31997647 31997647 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024835 exon6 c.C560T p.S187L . . . GGNBP2 79893 broad.mit.edu 36 17 32009828 32009828 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024835 exon8 c.G886T p.E296X . . . GGNBP2 79893 broad.mit.edu 36 17 32015894 32015894 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024835 exon10 c.G1267A p.D423N . . . OR1E1 8387 broad.mit.edu 36 17 3247645 3247645 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003553 exon1 c.G810T p.K270N . . . ACACA 31 broad.mit.edu 36 17 32592855 32592855 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198834 exon42 c.C5302T p.R1768C . . . ACACA 31 broad.mit.edu 36 17 32656102 32656102 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198834 exon27 c.G3398A p.R1133H . . . DDX52 11056 broad.mit.edu 36 17 33058517 33058517 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007010 exon9 c.G1213T p.E405X . . . HNF1B 6928 broad.mit.edu 36 17 33139099 33139099 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165923 exon6 c.A1199C p.N400T . . . ASPA 443 broad.mit.edu 36 17 3331753 3331753 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000049 exon2 c.C343A p.L115I . . . ASPA 443 broad.mit.edu 36 17 3349115 3349115 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000049 exon6 c.C925T p.R309C . . . GPR179 440435 broad.mit.edu 36 17 33736296 33736296 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004334 exon11 c.G6682T p.D2228Y . . . GPR179 440435 broad.mit.edu 36 17 33737228 33737228 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004334 exon11 c.G5750T p.R1917I . . . GPR179 440435 broad.mit.edu 36 17 33737962 33737962 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001004334 exon11 c.A5016C p.Q1672H . . . GPR179 440435 broad.mit.edu 36 17 33739246 33739246 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004334 exon11 c.C3732T p.C1244C . . . GPR179 440435 broad.mit.edu 36 17 33740032 33740032 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004334 exon11 c.C2946T p.S982S . . . GPR179 440435 broad.mit.edu 36 17 33746585 33746585 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004334 exon4 c.C1029T p.F343F . . . PSMB3 5691 broad.mit.edu 36 17 34162976 34162976 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002795 exon2 c.G51T p.K17N . . . TRPV1 7442 broad.mit.edu 36 17 3422279 3422279 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018727 exon14 c.C2117T p.S706F . . . FBXO47 494188 broad.mit.edu 36 17 34371762 34371762 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008777 exon3 c.C246A p.I82I . . . ERBB2 2064 broad.mit.edu 36 17 35119608 35119608 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005862 exon8 c.G501A p.P167P . . . ERBB2 2064 broad.mit.edu 36 17 35134936 35134936 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005862 exon24 c.C2512T p.R838W . . . GSDMB 55876 broad.mit.edu 36 17 35315718 35315718 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001042471 exon8 c.A896G p.D299G . . . GSDMA 284110 broad.mit.edu 36 17 35384084 35384084 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178171 exon9 c.G784T p.E262X . . . P2RX5 5026 broad.mit.edu 36 17 3539637 3539637 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002561 exon7 c.G651A p.L217L . . . MED24 9862 broad.mit.edu 36 17 35443232 35443232 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079518 exon6 c.C524A p.S175Y . . . CASC3 22794 broad.mit.edu 36 17 35551358 35551358 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007359 exon3 c.C269T p.S90L . . . CDC6 990 broad.mit.edu 36 17 35710760 35710760 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001254 exon10 c.G1404T p.L468F . . . ITGAE 3682 broad.mit.edu 36 17 3578162 3578162 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002208 exon25 c.G2962T p.E988X . . . TOP2A 7153 broad.mit.edu 36 17 35809743 35809743 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001067 exon24 c.G3103T p.E1035X . . . TOP2A 7153 broad.mit.edu 36 17 35822557 35822557 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001067 exon7 c.C769T p.L257F . . . ITGAE 3682 broad.mit.edu 36 17 3595959 3595959 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002208 exon18 c.G2167A p.A723T . . . CCR7 1236 broad.mit.edu 36 17 35965520 35965520 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001838 exon3 c.C137A p.S46Y . . . KRT222 125113 broad.mit.edu 36 17 36069835 36069835 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152349 exon3 c.C376A p.L126I . . . KRT24 192666 broad.mit.edu 36 17 36109308 36109308 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019016 exon6 c.C1275T p.N425N . . . KRT24 192666 broad.mit.edu 36 17 36110975 36110975 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019016 exon3 c.G798T p.E266D . . . KRT24 192666 broad.mit.edu 36 17 36113069 36113069 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019016 exon1 c.C403A p.L135I . . . KRT27 342574 broad.mit.edu 36 17 36192164 36192164 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181537 exon1 c.C108T p.C36C . . . KRT27 342574 broad.mit.edu 36 17 36192267 36192267 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181537 exon1 c.C5T p.S2F . . . KRT10 3858 broad.mit.edu 36 17 36232004 36232004 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000421 exon1 c.C360T p.G120G . . . KRT12 3859 broad.mit.edu 36 17 36272999 36272999 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000223 exon6 c.G1218T p.E406D . . . KRT20 54474 broad.mit.edu 36 17 36294581 36294581 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019010 exon1 c.G383A p.R128Q . . . KRT33B 3884 broad.mit.edu 36 17 36779224 36779224 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002279 exon1 c.G305T p.S102I . . . KRT31 3881 broad.mit.edu 36 17 36807069 36807069 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002277 exon1 c.G249A p.E83E . . . KRT37 8688 broad.mit.edu 36 17 36830714 36830714 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003770 exon7 c.G1292A p.S431N . . . KRT35 3886 broad.mit.edu 36 17 36886889 36886889 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002280 exon7 c.G1313A p.R438H . . . KRT35 3886 broad.mit.edu 36 17 36889137 36889137 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002280 exon3 c.G699T p.K233N . . . KRT14 3861 broad.mit.edu 36 17 36996139 36996139 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000526 exon1 c.G474T p.E158D . . . KRT14 3861 broad.mit.edu 36 17 36996243 36996243 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000526 exon1 c.G370A p.D124N . . . LEPREL4 10609 broad.mit.edu 36 17 37220777 37220777 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006455 exon3 c.C651T p.S217S . . . KLHL10 317719 broad.mit.edu 36 17 37255079 37255079 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152467 exon3 c.G860A p.R287H . . . TTC25 83538 broad.mit.edu 36 17 37370868 37370868 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031421 exon11 c.G1668T p.E556D . . . DNAJC7 7266 broad.mit.edu 36 17 37394970 37394970 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003315 exon7 c.A731G p.E244G . . . DNAJC7 7266 broad.mit.edu 36 17 37406065 37406065 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003315 exon2 c.G127T p.D43Y . . . GHDC 84514 broad.mit.edu 36 17 37598061 37598061 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032484 exon5 c.G613A p.E205K . . . STAT5B 6777 broad.mit.edu 36 17 37607886 37607886 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012448 exon18 c.G2235T p.Q745H . . . ATP6V0A1 535 broad.mit.edu 36 17 37875698 37875698 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130021 exon5 c.G359T p.R120I . . . ATP2A3 489 broad.mit.edu 36 17 3791676 3791676 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_174955 exon13 c.G1567A p.E523K . . . ATP2A3 489 broad.mit.edu 36 17 3793488 3793488 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174955 exon11 c.C1365T p.F455F . . . NAGLU 4669 broad.mit.edu 36 17 37946621 37946621 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000263 exon5 c.G892T p.E298X . . . COASY 80347 broad.mit.edu 36 17 37968234 37968234 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042529 exon2 c.C68T p.A23V . . . CNTNAP1 8506 broad.mit.edu 36 17 38101100 38101100 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003632 exon19 c.C3028T p.R1010C . . . EZH1 2145 broad.mit.edu 36 17 38117907 38117907 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001991 exon12 c.C1327T p.R443X . . . BECN1 8678 broad.mit.edu 36 17 38221588 38221588 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003766 exon8 c.G694T p.E232X . . . AOC3 8639 broad.mit.edu 36 17 38258020 38258020 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003734 exon1 c.A1134G p.A378A . . . AOC3 8639 broad.mit.edu 36 17 38258233 38258233 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003734 exon1 c.G1347A p.S449S . . . G6PC 2538 broad.mit.edu 36 17 38316630 38316630 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000151 exon5 c.C735T p.C245C . . . BRCA1 672 broad.mit.edu 36 17 38499715 38499715 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007294 exon10 c.G1359T p.E453D . . . ZZEF1 23140 broad.mit.edu 36 17 3869761 3869761 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015113 exon46 c.G7456A p.E2486K . . . ZZEF1 23140 broad.mit.edu 36 17 3924201 3924201 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015113 exon24 c.C3677A p.S1226Y . . . PPY 5539 broad.mit.edu 36 17 39374378 39374378 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002722 exon2 c.C171A p.I57I . . . HDAC5 10014 broad.mit.edu 36 17 39511725 39511725 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001015053 exon25 c.G3130A p.A1044T . . . UBTF 7343 broad.mit.edu 36 17 39644220 39644220 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001076683 exon10 c.G942T p.K314N . . . UBTF 7343 broad.mit.edu 36 17 39648629 39648629 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001076683 exon5 c.G393A p.A131A . . . ITGA2B 3674 broad.mit.edu 36 17 39817854 39817854 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000419 exon7 c.G787A p.D263N . . . C17orf104 284071 broad.mit.edu 36 17 40099473 40099473 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001145080 exon5 c.T668G p.L223R . . . C17orf104 284071 broad.mit.edu 36 17 40100478 40100478 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001145080 exon5 c.C1673T p.S558F . . . EFTUD2 9343 broad.mit.edu 36 17 40285383 40285383 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004247 exon26 c.G2635A p.D879N . . . CCDC103 388389 broad.mit.edu 36 17 40334540 40334540 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_213607 exon3 c.C270A p.I90I . . . GFAP 2670 broad.mit.edu 36 17 40346183 40346183 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001131019 exon4 c.G760A p.E254K . . . ANKFY1 51479 broad.mit.edu 36 17 4035063 4035063 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016376 exon12 c.C1498T p.R500W . . . HEXIM2 124790 broad.mit.edu 36 17 40602386 40602386 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144608 exon4 c.G288A p.S96S . . . FMNL1 752 broad.mit.edu 36 17 40671780 40671780 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005892 exon10 c.G961A p.D321N . . . ARHGAP27 201176 broad.mit.edu 36 17 40837767 40837767 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199282 exon4 c.C289T p.R97X . . . ANKFY1 51479 broad.mit.edu 36 17 4085933 4085933 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020740 exon3 c.G205A p.D69N . . . CRHR1 1394 broad.mit.edu 36 17 41240212 41240212 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001145147 exon2 c.C90T p.C30C . . . CRHR1 1394 broad.mit.edu 36 17 41267874 41267874 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001145147 exon12 c.T1091C p.V364A . . . MAPT 4137 broad.mit.edu 36 17 41405116 41405116 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001123067 exon3 c.C189A p.T63T . . . MAPT 4137 broad.mit.edu 36 17 41420245 41420245 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016834 exon4 c.C202T p.R68C . . . MAPT 4137 broad.mit.edu 36 17 41423200 41423200 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016835 exon8 c.G1302A p.E434E . . . KIAA1267 284058 broad.mit.edu 36 17 41471752 41471752 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015443 exon10 c.C2540T p.S847L . . . WNT9B 7484 broad.mit.edu 36 17 42308980 42308980 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003396 exon4 c.G971A p.S324N . . . GOSR2 9570 broad.mit.edu 36 17 42363525 42363525 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012511 exon3 c.G156T p.E52D . . . CDC27 996 broad.mit.edu 36 17 42556280 42556280 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114091 exon17 c.G2224T p.E742X . . . CDC27 996 broad.mit.edu 36 17 42561867 42561867 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001114091 exon16 c.A2069C p.K690T . . . CDC27 996 broad.mit.edu 36 17 42569663 42569663 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001114091 exon14 c.C1785A p.F595L . . . ITGB3 3690 broad.mit.edu 36 17 42715757 42715757 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000212 exon3 c.G204T p.E68D . . . C17orf57 124989 broad.mit.edu 36 17 42780208 42780208 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152347 exon9 c.C553T p.R185X . . . NPEPPS 9520 broad.mit.edu 36 17 43015191 43015191 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006310 exon5 c.G625A p.D209N . . . TBX21 30009 broad.mit.edu 36 17 43177324 43177324 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013351 exon6 c.G1201T p.A401S . . . OSBPL7 114881 broad.mit.edu 36 17 43246085 43246085 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_145798 exon15 c.A1466C p.K489T . . . CDK5RAP3 80279 broad.mit.edu 36 17 43407897 43407897 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_176096 exon7 c.G532T p.E178X . . . SNX11 29916 broad.mit.edu 36 17 43551101 43551101 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013323 exon5 c.C267T p.F89F . . . SNX11 29916 broad.mit.edu 36 17 43553698 43553698 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013323 exon7 c.G642T p.E214D . . . HOXB1 3211 broad.mit.edu 36 17 43962953 43962953 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002144 exon1 c.G313T p.E105X . . . HOXB3 3213 broad.mit.edu 36 17 43984593 43984593 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002146 exon3 c.G243T p.E81D . . . HOXB4 3214 broad.mit.edu 36 17 44009194 44009194 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024015 exon2 c.G645T p.M215I . . . HOXB8 3218 broad.mit.edu 36 17 44045632 44045632 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024016 exon2 c.G663T p.E221D . . . IGF2BP1 10642 broad.mit.edu 36 17 44470562 44470562 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006546 exon6 c.G435T p.E145D . . . IGF2BP1 10642 broad.mit.edu 36 17 44472343 44472343 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006546 exon7 c.G709A p.A237T . . . IGF2BP1 10642 broad.mit.edu 36 17 44474661 44474661 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160423 exon7 c.G583A p.E195K . . . B4GALNT2 124872 broad.mit.edu 36 17 44596547 44596547 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153446 exon8 c.G1045T p.D349Y . . . B4GALNT2 124872 broad.mit.edu 36 17 44601101 44601101 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153446 exon10 c.G1335T p.E445D . . . ZNF652 22834 broad.mit.edu 36 17 44730854 44730854 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145365 exon6 c.C1741A p.P581T . . . ZNF652 22834 broad.mit.edu 36 17 44745126 44745126 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001145365 exon3 c.G981T p.K327N . . . PHB 5245 broad.mit.edu 36 17 44837546 44837546 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002634 exon7 c.C626T p.A209V . . . NGFR 4804 broad.mit.edu 36 17 44945206 44945206 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002507 exon6 c.G1120T p.D374Y . . . FAM117A 81558 broad.mit.edu 36 17 45143669 45143669 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030802 exon8 c.C1309T p.R437C . . . MYST2 11143 broad.mit.edu 36 17 45229242 45229242 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199157 exon3 c.T295G p.S99A . . . PDK2 5164 broad.mit.edu 36 17 45541758 45541758 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002611 exon10 c.C1078A p.L360I . . . SAMD14 201191 broad.mit.edu 36 17 45557315 45557315 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174920 exon2 c.C8A p.S3Y . . . COL1A1 1277 broad.mit.edu 36 17 45617895 45617895 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000088 exon51 c.C4362T p.F1454F . . . ARRB2 409 broad.mit.edu 36 17 4568343 4568343 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004313 exon9 c.C660T p.H220H . . . CXCL16 58191 broad.mit.edu 36 17 4589384 4589384 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100812 exon1 c.G57T p.E19D . . . CHAD 1101 broad.mit.edu 36 17 45897776 45897776 + Missense_Mutation SNP C T T rs34405131 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001267 exon3 c.G962A p.R321H . . . ZMYND15 84225 broad.mit.edu 36 17 4591643 4591643 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032265 exon3 c.G610A p.V204I . . . MYCBPAP 84073 broad.mit.edu 36 17 45950004 45950004 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032133 exon4 c.C543A p.I181I . . . CACNA1G 8913 broad.mit.edu 36 17 46048688 46048688 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198382 exon27 c.C4896A p.V1632V . . . LUC7L3 51747 broad.mit.edu 36 17 46176169 46176169 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006107 exon6 c.C530T p.S177L . . . TOB1 10140 broad.mit.edu 36 17 46296287 46296287 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005749 exon1 c.G91T p.E31X . . . SPAG9 9043 broad.mit.edu 36 17 46422096 46422096 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003971 exon20 c.C2712A p.V904V . . . SPAG9 9043 broad.mit.edu 36 17 46434094 46434094 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003971 exon12 c.C1546T p.R516X . . . SPAG9 9043 broad.mit.edu 36 17 46437619 46437619 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003971 exon11 c.C1387T p.R463W . . . SPAG9 9043 broad.mit.edu 36 17 46446663 46446663 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003971 exon8 c.C1100T p.S367F . . . CA10 56934 broad.mit.edu 36 17 47086051 47086051 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020178 exon5 c.G511T p.E171X . . . CHRNE 1145 broad.mit.edu 36 17 4746805 4746805 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000080 exon2 c.C79A p.L27I . . . VPS53 55275 broad.mit.edu 36 17 478151 478151 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128159 exon9 c.A758C p.K253T . . . ENO3 2027 broad.mit.edu 36 17 4796883 4796883 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053013 exon3 c.G133T p.E45X . . . KIF2B 84643 broad.mit.edu 36 17 49256323 49256323 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032559 exon1 c.G930A p.T310T . . . KIF2B 84643 broad.mit.edu 36 17 49256732 49256732 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032559 exon1 c.G1339T p.D447Y . . . ZFP3 124961 broad.mit.edu 36 17 4935956 4935956 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153018 exon2 c.G433T p.E145X . . . USP6 9098 broad.mit.edu 36 17 4974679 4974679 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004505 exon3 c.G131A p.S44N . . . USP6 9098 broad.mit.edu 36 17 4982252 4982252 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004505 exon13 c.G1038A p.T346T . . . USP6 9098 broad.mit.edu 36 17 5014524 5014524 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004505 exon28 c.G3544T p.G1182X . . . USP6 9098 broad.mit.edu 36 17 5014660 5014660 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004505 exon28 c.C3680T p.A1227V . . . ZNF594 84622 broad.mit.edu 36 17 5027014 5027014 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032530 exon2 c.G1262T p.R421I . . . STXBP4 252983 broad.mit.edu 36 17 50475673 50475673 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178509 exon11 c.A933G p.V311V . . . HLF 3131 broad.mit.edu 36 17 50747735 50747735 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002126 exon3 c.C600A p.F200L . . . TMEM100 55273 broad.mit.edu 36 17 51153078 51153078 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018286 exon2 c.G353T p.R118I . . . PCTP 58488 broad.mit.edu 36 17 51199697 51199697 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021213 exon2 c.G144T p.K48N . . . ANKFN1 162282 broad.mit.edu 36 17 51783133 51783133 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153228 exon4 c.C205T p.R69C . . . ANKFN1 162282 broad.mit.edu 36 17 51909940 51909940 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153228 exon15 c.C1875A p.I625I . . . DGKE 8526 broad.mit.edu 36 17 52288966 52288966 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003647 exon8 c.C1193A p.S398Y . . . DGKE 8526 broad.mit.edu 36 17 52294585 52294585 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003647 exon11 c.C1498T p.R500X . . . NUP88 4927 broad.mit.edu 36 17 5243605 5243605 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002532 exon8 c.C1282A p.L428I . . . MSI2 124540 broad.mit.edu 36 17 52694539 52694539 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170721 exon4 c.G287A p.R96Q . . . RPAIN 84268 broad.mit.edu 36 17 5272226 5272226 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160243 exon6 c.G601T p.E201X . . . DHX33 56919 broad.mit.edu 36 17 5292925 5292925 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020162 exon11 c.G1743T p.E581D . . . OR4D1 26689 broad.mit.edu 36 17 53587577 53587577 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012374 exon1 c.G64T p.E22X . . . MKS1 54903 broad.mit.edu 36 17 53638519 53638519 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017777 exon18 c.C1600T p.R534X . . . MKS1 54903 broad.mit.edu 36 17 53646698 53646698 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017777 exon6 c.G565T p.E189X . . . LPO 4025 broad.mit.edu 36 17 53687200 53687200 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006151 exon9 c.C1135T p.L379L . . . LPO 4025 broad.mit.edu 36 17 53698596 53698596 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006151 exon11 c.C1603T p.R535C . . . MPO 4353 broad.mit.edu 36 17 53710216 53710216 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000250 exon7 c.G1175A p.R392H . . . BZRAP1 9256 broad.mit.edu 36 17 53740075 53740075 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004758 exon24 c.G4879A p.V1627I . . . BZRAP1 9256 broad.mit.edu 36 17 53741594 53741594 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004758 exon22 c.G4038T p.E1346D . . . RNF43 54894 broad.mit.edu 36 17 53847693 53847693 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017763 exon2 c.T245C p.L82S . . . SEPT4 5414 broad.mit.edu 36 17 53953192 53953192 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080416 exon11 c.C1231T p.R411W . . . SEPT4 5414 broad.mit.edu 36 17 53954411 53954411 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080416 exon6 c.G656A p.R219Q . . . SEPT4 5414 broad.mit.edu 36 17 53959120 53959120 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080416 exon2 c.C222A p.F74L . . . C17orf47 284083 broad.mit.edu 36 17 53976429 53976429 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001038704 exon1 c.C118T p.R40X . . . TEX14 56155 broad.mit.edu 36 17 53993902 53993902 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198393 exon30 c.G4255T p.D1419Y . . . TEX14 56155 broad.mit.edu 36 17 54020318 54020318 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198393 exon16 c.C2640A p.F880L . . . TEX14 56155 broad.mit.edu 36 17 54031844 54031844 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198393 exon14 c.G1861A p.E621K . . . TEX14 56155 broad.mit.edu 36 17 54034250 54034250 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198393 exon13 c.C1594A p.P532T . . . TEX14 56155 broad.mit.edu 36 17 54048568 54048568 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198393 exon7 c.C734A p.S245Y . . . TEX14 56155 broad.mit.edu 36 17 54048649 54048649 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198393 exon7 c.C653T p.A218V . . . TEX14 56155 broad.mit.edu 36 17 54084235 54084235 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198393 exon2 c.C127A p.L43I . . . PPM1E 22843 broad.mit.edu 36 17 54387876 54387876 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014906 exon2 c.C549A p.I183I . . . TRIM37 4591 broad.mit.edu 36 17 54460563 54460563 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005207 exon19 c.G2252A p.R751Q . . . SKA2 348235 broad.mit.edu 36 17 54551614 54551614 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182620 exon3 c.G145T p.E49X . . . C17orf71 55181 broad.mit.edu 36 17 54643458 54643458 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018149 exon1 c.C1264A p.L422I . . . C17orf71 55181 broad.mit.edu 36 17 54643791 54643791 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018149 exon1 c.C1597T p.R533X . . . C17orf71 55181 broad.mit.edu 36 17 54644987 54644987 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018149 exon3 c.C2021T p.S674L . . . CLTC 1213 broad.mit.edu 36 17 55098296 55098296 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004859 exon11 c.C1695A p.F565L . . . CLTC 1213 broad.mit.edu 36 17 55113151 55113151 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004859 exon19 c.G3016T p.E1006X . . . TUBD1 51174 broad.mit.edu 36 17 55306792 55306792 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193613 exon3 c.G176A p.R59H . . . USP32 84669 broad.mit.edu 36 17 55630475 55630475 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032582 exon27 c.C3362T p.A1121V . . . USP32 84669 broad.mit.edu 36 17 55726832 55726832 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032582 exon4 c.C405A p.F135L . . . APPBP2 10513 broad.mit.edu 36 17 55893977 55893977 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006380 exon8 c.C912A p.I304I . . . BCAS3 54828 broad.mit.edu 36 17 56334770 56334770 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099432 exon11 c.G746A p.R249Q . . . BCAS3 54828 broad.mit.edu 36 17 56466881 56466881 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099432 exon18 c.C1755T p.F585F . . . TBX4 9496 broad.mit.edu 36 17 56910841 56910841 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018488 exon5 c.C621T p.F207F . . . BRIP1 83990 broad.mit.edu 36 17 57118035 57118035 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032043 exon19 c.A2849C p.K950T . . . INTS2 57508 broad.mit.edu 36 17 57323731 57323731 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020748 exon14 c.G1824A p.S608S . . . INTS2 57508 broad.mit.edu 36 17 57339718 57339718 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020748 exon8 c.G1038A p.E346E . . . MED13 9969 broad.mit.edu 36 17 57397169 57397169 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005121 exon20 c.G4824A p.P1608P . . . MED13 9969 broad.mit.edu 36 17 57400212 57400212 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005121 exon18 c.A4157G p.K1386R . . . MED13 9969 broad.mit.edu 36 17 57416379 57416379 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005121 exon15 c.G2823T p.Q941H . . . MED13 9969 broad.mit.edu 36 17 57484706 57484706 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005121 exon3 c.A444C p.E148D . . . EFCAB3 146779 broad.mit.edu 36 17 57844905 57844905 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173503 exon9 c.G948T p.K316N . . . TLK2 11011 broad.mit.edu 36 17 57984800 57984800 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006852 exon9 c.G672T p.K224N . . . TLK2 11011 broad.mit.edu 36 17 58031829 58031829 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006852 exon18 c.C1636T p.R546W . . . MARCH10 162333 broad.mit.edu 36 17 58219641 58219641 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100875 exon3 c.G142A p.D48N . . . TANC2 26115 broad.mit.edu 36 17 58846727 58846727 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025185 exon23 c.C3875A p.S1292Y . . . KCNH6 81033 broad.mit.edu 36 17 58976876 58976876 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030779 exon14 c.G2866T p.G956X . . . KCNH6 81033 broad.mit.edu 36 17 58976952 58976952 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030779 exon14 c.G2942T p.R981I . . . CCDC47 57003 broad.mit.edu 36 17 59185548 59185548 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020198 exon9 c.C1011A p.F337L . . . PSMC5 5705 broad.mit.edu 36 17 59260946 59260946 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002805 exon4 c.C169T p.R57C . . . PSMC5 5705 broad.mit.edu 36 17 59261453 59261453 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_002805 exon6 c.A412G p.M138V . . . PSMC5 5705 broad.mit.edu 36 17 59262236 59262236 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002805 exon8 c.C788A p.S263Y . . . GH2 2689 broad.mit.edu 36 17 59303275 59303275 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022645 exon3 c.C312T p.V104V . . . GH2 2689 broad.mit.edu 36 17 59312196 59312196 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022557 exon3 c.G216T p.Q72H . . . WSCD1 23302 broad.mit.edu 36 17 5932076 5932076 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015253 exon3 c.C470T p.T157I . . . CSH1 1442 broad.mit.edu 36 17 59327599 59327599 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001317 exon1 c.C5A p.A2D . . . SCN4A 6329 broad.mit.edu 36 17 59373943 59373943 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000334 exon23 c.C4263T p.F1421F . . . SCN4A 6329 broad.mit.edu 36 17 59379116 59379116 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000334 exon17 c.C3184T p.R1062C . . . SCN4A 6329 broad.mit.edu 36 17 59379748 59379748 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000334 exon16 c.C3099T p.F1033F . . . SCN4A 6329 broad.mit.edu 36 17 59388442 59388442 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000334 exon13 c.G2188A p.V730M . . . SCN4A 6329 broad.mit.edu 36 17 59388585 59388585 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000334 exon13 c.C2045T p.S682L . . . WSCD1 23302 broad.mit.edu 36 17 5953720 5953720 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015253 exon6 c.C919T p.R307W . . . PECAM1 5175 broad.mit.edu 36 17 59787387 59787387 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000442 exon7 c.C1325T p.T442I . . . CCDC45 90799 broad.mit.edu 36 17 59952727 59952727 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138363 exon10 c.G1099T p.E367X . . . CCDC45 90799 broad.mit.edu 36 17 59964278 59964278 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138363 exon20 c.C2385A p.F795L . . . LRRC37A3 374819 broad.mit.edu 36 17 60286410 60286410 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_199340 exon11 c.A4316C p.K1439T . . . RGS9 8787 broad.mit.edu 36 17 60653855 60653855 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003835 exon19 c.C1893A p.N631K . . . AXIN2 8313 broad.mit.edu 36 17 60984638 60984638 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004655 exon2 c.A563C p.Q188P . . . CCDC46 201134 broad.mit.edu 36 17 61455830 61455830 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199165 exon14 c.G1376A p.R459H . . . APOH 350 broad.mit.edu 36 17 61638746 61638746 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000042 exon8 c.G1005A p.W335X . . . APOH 350 broad.mit.edu 36 17 61647201 61647201 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000042 exon5 c.G537A p.A179A . . . PRKCA 5578 broad.mit.edu 36 17 62067992 62067992 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002737 exon4 c.G346A p.D116N . . . HELZ 9931 broad.mit.edu 36 17 62547147 62547147 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014877 exon27 c.G3674A p.R1225Q . . . HELZ 9931 broad.mit.edu 36 17 62549630 62549630 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014877 exon26 c.G3548T p.R1183I . . . HELZ 9931 broad.mit.edu 36 17 62562712 62562712 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014877 exon23 c.G3018T p.Q1006H . . . HELZ 9931 broad.mit.edu 36 17 62594283 62594283 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014877 exon14 c.T1522A p.F508I . . . GLOD4 51031 broad.mit.edu 36 17 626955 626955 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016080 exon3 c.A164C p.K55T . . . PSMD12 5718 broad.mit.edu 36 17 62773972 62773972 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174871 exon5 c.G542A p.R181Q . . . PSMD12 5718 broad.mit.edu 36 17 62783943 62783943 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_174871 exon2 c.G175T p.E59X . . . BPTF 2186 broad.mit.edu 36 17 63302236 63302236 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004459 exon5 c.G1967A p.S656N . . . BPTF 2186 broad.mit.edu 36 17 63320655 63320655 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182641 exon7 c.G2455T p.E819X . . . BPTF 2186 broad.mit.edu 36 17 63337539 63337539 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182641 exon11 c.C3077A p.S1026X . . . BPTF 2186 broad.mit.edu 36 17 63372692 63372692 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182641 exon21 c.T7406G p.L2469R . . . SLC16A6 9120 broad.mit.edu 36 17 63779231 63779231 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004694 exon5 c.C665T p.A222V . . . SLC16A6 9120 broad.mit.edu 36 17 63780382 63780382 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004694 exon4 c.C498T p.F166F . . . ARSG 22901 broad.mit.edu 36 17 63878254 63878254 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014960 exon8 c.C976T p.R326C . . . WIPI1 55062 broad.mit.edu 36 17 63958611 63958611 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017983 exon3 c.C186T p.I62I . . . PRKAR1A 5573 broad.mit.edu 36 17 64031473 64031473 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_212472 exon4 c.G361T p.D121Y . . . PRKAR1A 5573 broad.mit.edu 36 17 64038013 64038013 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212472 exon11 c.G974T p.G325V . . . PRKAR1A 5573 broad.mit.edu 36 17 64038142 64038142 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212472 exon11 c.G1103A p.R368Q . . . ABCA8 10351 broad.mit.edu 36 17 64395108 64395108 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007168 exon23 c.C3159T p.F1053F . . . ABCA8 10351 broad.mit.edu 36 17 64399285 64399285 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007168 exon22 c.G2964A p.W988X . . . ABCA8 10351 broad.mit.edu 36 17 64401925 64401925 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007168 exon21 c.G2900T p.R967I . . . ABCA8 10351 broad.mit.edu 36 17 64415481 64415481 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007168 exon16 c.T2153G p.F718C . . . ABCA8 10351 broad.mit.edu 36 17 64436935 64436935 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007168 exon8 c.G975T p.K325N . . . ABCA9 10350 broad.mit.edu 36 17 64490324 64490324 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080283 exon37 c.C4694A p.S1565X . . . ABCA9 10350 broad.mit.edu 36 17 64524039 64524039 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080283 exon22 c.A2989C p.I997L . . . ABCA9 10350 broad.mit.edu 36 17 64526264 64526264 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080283 exon20 c.C2652A p.F884L . . . ABCA9 10350 broad.mit.edu 36 17 64557160 64557160 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080283 exon3 c.C163A p.H55N . . . KIAA0753 9851 broad.mit.edu 36 17 6456067 6456067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014804 exon8 c.G1441T p.D481Y . . . ABCA6 23460 broad.mit.edu 36 17 64604023 64604023 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080284 exon25 c.C3361T p.R1121C . . . ABCA6 23460 broad.mit.edu 36 17 64605693 64605693 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080284 exon23 c.C3083A p.S1028Y . . . ABCA6 23460 broad.mit.edu 36 17 64619982 64619982 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080284 exon16 c.G2069T p.R690I . . . ABCA6 23460 broad.mit.edu 36 17 64631109 64631109 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080284 exon10 c.C1302A p.F434L . . . ABCA6 23460 broad.mit.edu 36 17 64641490 64641490 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080284 exon6 c.C678A p.F226L . . . KIAA0753 9851 broad.mit.edu 36 17 6464861 6464861 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014804 exon7 c.G1286A p.R429Q . . . ABCA10 10349 broad.mit.edu 36 17 64661207 64661207 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080282 exon34 c.G4041T p.K1347N . . . ABCA10 10349 broad.mit.edu 36 17 64662771 64662771 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080282 exon31 c.C3678A p.S1226S . . . ABCA10 10349 broad.mit.edu 36 17 64663658 64663658 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080282 exon30 c.C3459A p.I1153I . . . ABCA5 23461 broad.mit.edu 36 17 64759601 64759601 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_172232 exon35 c.C4417T p.R1473X . . . ABCA5 23461 broad.mit.edu 36 17 64768129 64768129 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_172232 exon27 c.G3584A p.R1195Q . . . MAP2K6 5608 broad.mit.edu 36 17 65025257 65025257 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002758 exon4 c.G154T p.D52Y . . . MAP2K6 5608 broad.mit.edu 36 17 65028101 65028101 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002758 exon6 c.C462A p.I154I . . . NXN 64359 broad.mit.edu 36 17 653763 653763 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022463 exon7 c.A1034C p.K345T . . . KCNJ16 3773 broad.mit.edu 36 17 65640603 65640603 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018658 exon5 c.G780A p.E260E . . . XAF1 54739 broad.mit.edu 36 17 6600149 6600149 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199139 exon1 c.A28T p.N10Y . . . SLC39A11 201266 broad.mit.edu 36 17 68539377 68539377 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159770 exon4 c.C219T p.F73F . . . SSTR2 6752 broad.mit.edu 36 17 68677200 68677200 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001050 exon2 c.C147A p.I49I . . . SSTR2 6752 broad.mit.edu 36 17 68677891 68677891 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001050 exon2 c.G838A p.V280I . . . C17orf80 55028 broad.mit.edu 36 17 68743555 68743555 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100622 exon3 c.G339T p.K113N . . . SDK2 54549 broad.mit.edu 36 17 68858436 68858436 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001144952 exon42 c.C5847T p.F1949F . . . ASGR2 433 broad.mit.edu 36 17 6946188 6946189 + Missense_Mutation DNP CC AT AT novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_001181 exon8 c.714_715AT . . . . TTYH2 94015 broad.mit.edu 36 17 69760989 69760989 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032646 exon12 c.C1434A p.V478V . . . KIF19 124602 broad.mit.edu 36 17 69849690 69849690 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153209 exon3 c.C201T p.F67F . . . KIF19 124602 broad.mit.edu 36 17 69856959 69856959 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153209 exon10 c.G1089T p.Q363H . . . CD300A 11314 broad.mit.edu 36 17 69991854 69991854 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007261 exon7 c.G894T p.K298N . . . CD300LB 124599 broad.mit.edu 36 17 70033720 70033720 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174892 exon2 c.C243A p.T81T . . . TMEM104 54868 broad.mit.edu 36 17 70344349 70344349 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017728 exon10 c.C1419T p.F473F . . . GRIN2C 2905 broad.mit.edu 36 17 70355605 70355605 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000835 exon8 c.G1752T p.Q584H . . . GRIN2C 2905 broad.mit.edu 36 17 70358053 70358053 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000835 exon6 c.G1378A p.D460N . . . DLG4 1742 broad.mit.edu 36 17 7037580 7037580 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001128827 exon16 c.G1630A p.A544T . . . OTOP2 92736 broad.mit.edu 36 17 70435451 70435451 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_178160 exon5 c.T606G p.S202S . . . DVL2 1856 broad.mit.edu 36 17 7071472 7071472 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004422 exon12 c.G1338T p.K446N . . . GGA3 23163 broad.mit.edu 36 17 70750082 70750082 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014001 exon7 c.G578T p.R193I . . . MIF4GD 57409 broad.mit.edu 36 17 70777819 70777819 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020679 exon2 c.C53T p.T18I . . . GRB2 2885 broad.mit.edu 36 17 70829423 70829423 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002086 exon5 c.C380A p.S127Y . . . CTDNEP1 23399 broad.mit.edu 36 17 7090398 7090398 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015343 exon6 c.G376A p.E126K . . . ITGB4 3691 broad.mit.edu 36 17 71243819 71243819 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005731 exon14 c.G1750T p.D584Y . . . SLC2A4 6517 broad.mit.edu 36 17 7128892 7128892 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042 exon8 c.G930A p.S310S . . . SLC2A4 6517 broad.mit.edu 36 17 7129840 7129840 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042 exon10 c.C1215A p.F405L . . . UNK 85451 broad.mit.edu 36 17 71317529 71317529 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080419 exon3 c.C426T p.F142F . . . UNK 85451 broad.mit.edu 36 17 71325187 71325187 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001080419 exon10 c.A1518C p.K506N . . . FBF1 85302 broad.mit.edu 36 17 71440689 71440689 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080542 exon4 c.C107A p.S36Y . . . EVPL 2125 broad.mit.edu 36 17 71516464 71516464 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001988 exon22 c.G4417T p.D1473Y . . . SRP68 6730 broad.mit.edu 36 17 71574955 71574955 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014230 exon3 c.G303T p.K101N . . . PRPSAP1 5635 broad.mit.edu 36 17 71839946 71839946 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002766 exon4 c.G456A p.A152A . . . ACAP1 9744 broad.mit.edu 36 17 7191175 7191175 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014716 exon14 c.C1233T p.V411V . . . ACAP1 9744 broad.mit.edu 36 17 7192031 7192031 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014716 exon15 c.G1410T p.V470V . . . ACAP1 9744 broad.mit.edu 36 17 7193088 7193088 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014716 exon18 c.C1729T p.R577X . . . SRSF2 6427 broad.mit.edu 36 17 72243944 72243944 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003016 exon2 c.C560A p.S187Y . . . TNK1 8711 broad.mit.edu 36 17 7227348 7227348 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003985 exon3 c.G219T p.K73N . . . MFSD11 79157 broad.mit.edu 36 17 72275094 72275094 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024311 exon10 c.G714T p.E238D . . . PLSCR3 57048 broad.mit.edu 36 17 7237658 7237658 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020360 exon3 c.G229A p.E77K . . . C17orf74 201243 broad.mit.edu 36 17 7270080 7270080 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175734 exon2 c.G183A p.W61X . . . SEC14L1 6397 broad.mit.edu 36 17 72701223 72701223 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001039573 exon6 c.A471C p.K157N . . . C17orf74 201243 broad.mit.edu 36 17 7270522 7270522 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175734 exon3 c.G488A p.R163H . . . FGF11 2256 broad.mit.edu 36 17 7285921 7285921 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004112 exon3 c.C407T p.S136L . . . POLR2A 5430 broad.mit.edu 36 17 7340611 7340611 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000937 exon4 c.C492T p.F164F . . . TNRC6C 57690 broad.mit.edu 36 17 73557250 73557250 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018996 exon4 c.C512A p.S171Y . . . Unknown 0 broad.mit.edu 36 17 73970591 73970591 + IGR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173628 exon57 c.G9104T p.R3035I . . . Unknown 0 broad.mit.edu 36 17 73976318 73976318 + IGR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173628 exon55 c.C8754T p.I2918I . . . Unknown 0 broad.mit.edu 36 17 74003685 74003685 + IGR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173628 exon38 c.C5770T p.R1924W . . . Unknown 0 broad.mit.edu 36 17 74022599 74022599 + IGR SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173628 exon26 c.C3965A p.S1322Y . . . Unknown 0 broad.mit.edu 36 17 74059241 74059241 + IGR SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_173628 exon16 c.A2362C p.N788H . . . Unknown 0 broad.mit.edu 36 17 74079390 74079390 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173628 exon4 c.G609A p.Q203Q . . . CYTH1 9267 broad.mit.edu 36 17 74206642 74206642 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017456 exon8 c.C554A p.T185N . . . SHBG 6462 broad.mit.edu 36 17 7475660 7475660 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040 exon5 c.G584A p.R195H . . . ATP1B2 482 broad.mit.edu 36 17 7497981 7497981 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001678 exon3 c.C339A p.F113L . . . ATP1B2 482 broad.mit.edu 36 17 7499659 7499659 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001678 exon6 c.A699C p.K233N . . . ENPP7 339221 broad.mit.edu 36 17 75319596 75319596 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178543 exon1 c.C100T p.L34F . . . WRAP53 55135 broad.mit.edu 36 17 7546878 7546878 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143990 exon9 c.C1257T p.F419F . . . CCDC40 55036 broad.mit.edu 36 17 75638353 75638353 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017950 exon6 c.C909T p.I303I . . . CCDC40 55036 broad.mit.edu 36 17 75647300 75647300 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017950 exon9 c.G1366T p.D456Y . . . DNAH2 146754 broad.mit.edu 36 17 7567717 7567717 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020877 exon2 c.G213A p.E71E . . . SLC26A11 284129 broad.mit.edu 36 17 75816222 75816222 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166349 exon6 c.G604A p.A202T . . . RNF213 57674 broad.mit.edu 36 17 75931607 75931607 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020914 exon28 c.C6217T p.R2073X . . . RNF213 57674 broad.mit.edu 36 17 75952096 75952096 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020914 exon42 c.G11808T p.K3936N . . . RNF213 57674 broad.mit.edu 36 17 75971385 75971385 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020914 exon59 c.T14137G p.F4713V . . . RNF213 57674 broad.mit.edu 36 17 75981777 75981777 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020914 exon69 c.G15655T p.E5219X . . . DNAH2 146754 broad.mit.edu 36 17 7603024 7603024 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020877 exon14 c.A2305G p.K769E . . . DNAH2 146754 broad.mit.edu 36 17 7637187 7637187 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020877 exon47 c.G7508A p.R2503H . . . DNAH2 146754 broad.mit.edu 36 17 7641509 7641509 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020877 exon51 c.G8016T p.K2672N . . . RPTOR 57521 broad.mit.edu 36 17 76481235 76481235 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020761 exon19 c.C2213A p.S738Y . . . DNAH2 146754 broad.mit.edu 36 17 7649379 7649379 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020877 exon60 c.G9385A p.A3129T . . . DNAH2 146754 broad.mit.edu 36 17 7662458 7662458 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020877 exon68 c.G10491T p.E3497D . . . SLC38A10 124565 broad.mit.edu 36 17 76840915 76840915 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138570 exon13 c.G1620A p.P540P . . . NPLOC4 55666 broad.mit.edu 36 17 77174716 77174716 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017921 exon10 c.G986A p.R329Q . . . CHD3 1107 broad.mit.edu 36 17 7744945 7744945 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005852 exon19 c.G3029A p.R1010Q . . . CHD3 1107 broad.mit.edu 36 17 7752490 7752490 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005852 exon34 c.C5096T p.S1699L . . . CSNK1D 1453 broad.mit.edu 36 17 77802690 77802690 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139062 exon6 c.G739A p.E247K . . . NARF 26502 broad.mit.edu 36 17 78015557 78015557 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031968 exon3 c.A214C p.N72H . . . NARF 26502 broad.mit.edu 36 17 78034915 78034915 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031968 exon9 c.C942A p.L314L . . . WDR45L 56270 broad.mit.edu 36 17 78167698 78167698 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019613 exon9 c.G919A p.A307T . . . WDR45L 56270 broad.mit.edu 36 17 78176575 78176575 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019613 exon5 c.G406A p.E136K . . . ZNF750 79755 broad.mit.edu 36 17 78382489 78382489 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024702 exon2 c.C1131T p.F377F . . . ZNF750 79755 broad.mit.edu 36 17 78382600 78382600 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024702 exon2 c.C1020T p.G340G . . . GUCY2D 3000 broad.mit.edu 36 17 7848059 7848059 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000180 exon3 c.G886A p.A296T . . . ALOX12B 242 broad.mit.edu 36 17 7924282 7924282 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001139 exon6 c.C750A p.V250V . . . ALOXE3 59344 broad.mit.edu 36 17 7956174 7956174 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165960 exon7 c.T1142C p.M381T . . . ARHGEF15 22899 broad.mit.edu 36 17 8159308 8159308 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173728 exon6 c.G1248A p.R416R . . . KRBA2 124751 broad.mit.edu 36 17 8213308 8213308 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_213597 exon2 c.C1348A p.L450I . . . KRBA2 124751 broad.mit.edu 36 17 8214109 8214109 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_213597 exon2 c.C547T p.R183X . . . KRBA2 124751 broad.mit.edu 36 17 8215548 8215548 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_213597 exon1 c.C30A p.V10V . . . NDEL1 81565 broad.mit.edu 36 17 8294853 8294853 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025579 exon6 c.G557T p.R186I . . . NDEL1 81565 broad.mit.edu 36 17 8304070 8304070 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001025579 exon8 c.G811A p.A271T . . . MYH10 4628 broad.mit.edu 36 17 8331521 8331521 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005964 exon34 c.G4908A p.A1636A . . . MYH10 4628 broad.mit.edu 36 17 8350462 8350462 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005964 exon25 c.G3192A p.T1064T . . . MYH10 4628 broad.mit.edu 36 17 8352660 8352660 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005964 exon24 c.G3058T p.E1020X . . . MYH10 4628 broad.mit.edu 36 17 8396129 8396129 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005964 exon8 c.C849A p.I283I . . . CCDC42 146849 broad.mit.edu 36 17 8579176 8579176 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001158261 exon5 c.A614T p.E205V . . . CCDC42 146849 broad.mit.edu 36 17 8588201 8588201 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001158261 exon2 c.C110T p.S37L . . . MFSD6L 162387 broad.mit.edu 36 17 8641949 8641949 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152599 exon1 c.C1215T p.F405F . . . PIK3R6 146850 broad.mit.edu 36 17 8665956 8665956 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001010855 exon17 c.G1811A p.R604Q . . . PIK3R6 146850 broad.mit.edu 36 17 8680624 8680624 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001010855 exon7 c.G426T p.Q142H . . . PIK3R6 146850 broad.mit.edu 36 17 8680865 8680865 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001010855 exon6 c.C359T p.A120V . . . STX8 9482 broad.mit.edu 36 17 9222664 9222664 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004853 exon7 c.G573T p.E191D . . . USP43 124739 broad.mit.edu 36 17 9572519 9572519 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153210 exon15 c.G2859T p.M953I . . . GLP2R 9340 broad.mit.edu 36 17 9686626 9686626 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004246 exon4 c.G472A p.E158K . . . GLP2R 9340 broad.mit.edu 36 17 9733528 9733528 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004246 exon13 c.C1443T p.L481L . . . POTED 317754 broad.mit.edu 36 21 13904782 13904782 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_174981 exon1 c.G362A p.G121E . . . POTED 317754 broad.mit.edu 36 21 13909380 13909380 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_174981 exon2 c.G587A p.R196Q . . . POTED 317754 broad.mit.edu 36 21 13912638 13912638 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_174981 exon4 c.G908T p.R303I . . . POTED 317754 broad.mit.edu 36 21 13935567 13935567 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_174981 exon11 c.C1564T p.L522F . . . LIPI 149998 broad.mit.edu 36 21 14446853 14446853 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_198996 exon8 c.A1093C p.I365L . . . LIPI 149998 broad.mit.edu 36 21 14483370 14483370 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198996 exon2 c.C351T p.F117F . . . SAMSN1 64092 broad.mit.edu 36 21 14794736 14794736 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022136 exon6 c.G753T p.E251D . . . NRIP1 8204 broad.mit.edu 36 21 15261568 15261568 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003489 exon4 c.G817A p.E273K . . . USP25 29761 broad.mit.edu 36 21 16085766 16085766 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013396 exon5 c.G467A p.R156Q . . . USP25 29761 broad.mit.edu 36 21 16127647 16127647 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013396 exon17 c.A2103G p.E701E . . . USP25 29761 broad.mit.edu 36 21 16136671 16136671 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013396 exon18 c.A2278G p.I760V . . . USP25 29761 broad.mit.edu 36 21 16172575 16172575 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013396 exon24 c.G3078A p.P1026P . . . USP25 29761 broad.mit.edu 36 21 16172643 16172643 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013396 exon24 c.G3146A p.R1049Q . . . CXADR 1525 broad.mit.edu 36 21 17846016 17846016 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001338 exon3 c.G289T p.D97Y . . . TMPRSS15 5651 broad.mit.edu 36 21 18620742 18620742 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002772 exon16 c.G1799T p.G600V . . . TMPRSS15 5651 broad.mit.edu 36 21 18623405 18623405 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002772 exon15 c.G1732A p.D578N . . . TMPRSS15 5651 broad.mit.edu 36 21 18635640 18635640 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002772 exon13 c.G1525T p.E509X . . . TMPRSS15 5651 broad.mit.edu 36 21 18638196 18638196 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002772 exon11 c.G1224A p.G408G . . . TMPRSS15 5651 broad.mit.edu 36 21 18692102 18692102 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002772 exon3 c.G309T p.K103N . . . TMPRSS15 5651 broad.mit.edu 36 21 18697788 18697788 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002772 exon1 c.C23A p.S8Y . . . NCAM2 4685 broad.mit.edu 36 21 21578528 21578528 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004540 exon3 c.C274T p.R92C . . . NCAM2 4685 broad.mit.edu 36 21 21668171 21668171 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004540 exon9 c.G1162T p.G388W . . . NCAM2 4685 broad.mit.edu 36 21 21828826 21828826 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004540 exon17 c.A2380G p.T794A . . . MRPL39 54148 broad.mit.edu 36 21 25891595 25891595 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017446 exon6 c.G591T p.E197D . . . APP 351 broad.mit.edu 36 21 26249863 26249863 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201414 exon10 c.C1311T p.F437F . . . APP 351 broad.mit.edu 36 21 26347431 26347431 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201414 exon4 c.G460A p.A154T . . . CYYR1 116159 broad.mit.edu 36 21 26762703 26762703 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052954 exon4 c.C453T p.N151N . . . ADAMTS1 9510 broad.mit.edu 36 21 27136542 27136542 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006988 exon2 c.T1064G p.L355R . . . ADAMTS1 9510 broad.mit.edu 36 21 27136851 27136851 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006988 exon2 c.G755A p.R252Q . . . LTN1 26046 broad.mit.edu 36 21 29247547 29247547 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015565 exon17 c.G3240A p.L1080L . . . LTN1 26046 broad.mit.edu 36 21 29254762 29254762 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015565 exon12 c.C2439A p.F813L . . . LTN1 26046 broad.mit.edu 36 21 29263721 29263721 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015565 exon9 c.C1387T p.R463C . . . USP16 10600 broad.mit.edu 36 21 29348374 29348374 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001992 exon18 c.C2464A p.L822M . . . BACH1 571 broad.mit.edu 36 21 29620857 29620857 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206866 exon3 c.G841A p.E281K . . . BACH1 571 broad.mit.edu 36 21 29623722 29623722 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_206866 exon4 c.G1613A p.R538Q . . . KRTAP23-1 337963 broad.mit.edu 36 21 30642754 30642754 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181624 exon1 c.C42A p.S14S . . . KRTAP13-4 284827 broad.mit.edu 36 21 30724845 30724845 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_181600 exon1 c.C381T p.Y127Y . . . KRTAP6-2 337967 broad.mit.edu 36 21 30893046 30893046 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181604 exon1 c.G19A p.G7R . . . KRTAP8-1 337879 broad.mit.edu 36 21 31107397 31107397 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175857 exon1 c.A13T p.N5Y . . . TIAM1 7074 broad.mit.edu 36 21 31430163 31430163 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003253 exon24 c.C3842T p.S1281L . . . TIAM1 7074 broad.mit.edu 36 21 31504351 31504351 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003253 exon12 c.G2269A p.D757N . . . TIAM1 7074 broad.mit.edu 36 21 31539828 31539828 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003253 exon7 c.C1431T p.Y477Y . . . TIAM1 7074 broad.mit.edu 36 21 31560866 31560866 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003253 exon5 c.G294T p.L98F . . . HUNK 30811 broad.mit.edu 36 21 32268837 32268837 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014586 exon7 c.C1110T p.R370R . . . C21orf63 59271 broad.mit.edu 36 21 32761974 32761974 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058187 exon4 c.G581T p.R194M . . . C21orf63 59271 broad.mit.edu 36 21 32798132 32798132 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058187 exon7 c.G885A p.S295S . . . SYNJ1 8867 broad.mit.edu 36 21 32972856 32972856 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003895 exon12 c.C1597T p.R533X . . . SYNJ1 8867 broad.mit.edu 36 21 32994241 32994241 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003895 exon4 c.C374A p.S125Y . . . GCFC1 94104 broad.mit.edu 36 21 33029143 33029143 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016631 exon18 c.G2743A p.E915K . . . GCFC1 94104 broad.mit.edu 36 21 33045099 33045099 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013329 exon10 c.G1723A p.D575N . . . GCFC1 94104 broad.mit.edu 36 21 33056342 33056342 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013329 exon4 c.G807A p.E269E . . . IFNAR2 3455 broad.mit.edu 36 21 33539154 33539154 + Missense_Mutation SNP G T T rs9754221 by-cluster,by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207584 exon4 c.G126T p.K42N . . . IFNAR2 3455 broad.mit.edu 36 21 33554830 33554830 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207584 exon8 c.C768A p.V256V . . . IL10RB 3588 broad.mit.edu 36 21 33577344 33577344 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000628 exon5 c.C574T p.R192X . . . IFNGR2 3460 broad.mit.edu 36 21 33726939 33726939 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005534 exon6 c.C770A p.S257X . . . SON 6651 broad.mit.edu 36 21 33843785 33843785 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032195 exon3 c.A378C p.E126D . . . SON 6651 broad.mit.edu 36 21 33847700 33847700 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032195 exon3 c.G4293T p.M1431I . . . SON 6651 broad.mit.edu 36 21 33849517 33849517 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032195 exon3 c.G6110T p.R2037I . . . SON 6651 broad.mit.edu 36 21 33851446 33851446 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032195 exon4 c.A6275G p.K2092R . . . DONSON 29980 broad.mit.edu 36 21 33873735 33873735 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017613 exon9 c.C1354T p.R452W . . . DONSON 29980 broad.mit.edu 36 21 33876140 33876140 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017613 exon7 c.C1138A p.L380I . . . ITSN1 6453 broad.mit.edu 36 21 34061894 34061894 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001132 exon11 c.C934T p.R312X . . . ITSN1 6453 broad.mit.edu 36 21 34066337 34066337 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001132 exon12 c.G1145A p.R382H . . . ITSN1 6453 broad.mit.edu 36 21 34069253 34069253 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001132 exon14 c.G1567A p.E523K . . . ITSN1 6453 broad.mit.edu 36 21 34075639 34075639 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001132 exon15 c.C1601A p.S534Y . . . ITSN1 6453 broad.mit.edu 36 21 34076209 34076209 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001132 exon16 c.G1726T p.E576X . . . ITSN1 6453 broad.mit.edu 36 21 34130766 34130766 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001132 exon29 c.T3621G p.N1207K . . . ITSN1 6453 broad.mit.edu 36 21 34152866 34152866 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003024 exon31 c.C3790A p.Q1264K . . . ITSN1 6453 broad.mit.edu 36 21 34182415 34182415 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003024 exon40 c.G5107A p.E1703K . . . SETD4 54093 broad.mit.edu 36 21 36342503 36342503 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017438 exon5 c.G269A p.R90Q . . . DOPEY2 9980 broad.mit.edu 36 21 36582973 36582973 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005128 exon34 c.C6347A p.S2116X . . . MORC3 23515 broad.mit.edu 36 21 36627822 36627822 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015358 exon2 c.G48A p.P16P . . . MORC3 23515 broad.mit.edu 36 21 36638862 36638862 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015358 exon7 c.G872A p.R291Q . . . MORC3 23515 broad.mit.edu 36 21 36650810 36650810 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015358 exon10 c.G1126A p.E376K . . . HLCS 3141 broad.mit.edu 36 21 37224516 37224516 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000411 exon6 c.G1084A p.E362K . . . TTC3 7267 broad.mit.edu 36 21 37416149 37416149 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001894 exon12 c.G1063T p.G355C . . . TTC3 7267 broad.mit.edu 36 21 37429567 37429567 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001894 exon18 c.G1461T p.M487I . . . TTC3 7267 broad.mit.edu 36 21 37459807 37459807 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001894 exon33 c.G3421T p.E1141X . . . DSCR3 10311 broad.mit.edu 36 21 37532753 37532753 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006052 exon3 c.G229T p.E77X . . . DYRK1A 1859 broad.mit.edu 36 21 37806377 37806377 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130436 exon11 c.G1938T p.M646I . . . KCNJ6 3763 broad.mit.edu 36 21 38008718 38008718 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002240 exon3 c.C612A p.V204V . . . KCNJ6 3763 broad.mit.edu 36 21 38009095 38009095 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002240 exon3 c.G235A p.D79N . . . DSCR4 10281 broad.mit.edu 36 21 38348938 38348938 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005867 exon3 c.G238T p.E80X . . . KCNJ15 3772 broad.mit.edu 36 21 38594147 38594147 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_170736 exon3 c.T1094G p.L365R . . . BRWD1 54014 broad.mit.edu 36 21 39480967 39480967 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018963 exon42 c.C6818A p.S2273Y . . . BRWD1 54014 broad.mit.edu 36 21 39492765 39492765 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033656 exon40 c.C5447A p.T1816N . . . BRWD1 54014 broad.mit.edu 36 21 39509146 39509146 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033656 exon32 c.G3672A p.A1224A . . . LCA5L 150082 broad.mit.edu 36 21 39700150 39700150 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152505 exon10 c.C1541T p.T514M . . . LCA5L 150082 broad.mit.edu 36 21 39705556 39705556 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152505 exon7 c.C1018T p.R340X . . . LCA5L 150082 broad.mit.edu 36 21 39717023 39717023 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152505 exon5 c.C586A p.L196I . . . SH3BGR 6450 broad.mit.edu 36 21 39768958 39768958 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007341 exon3 c.G448T p.E150X . . . B3GALT5 10317 broad.mit.edu 36 21 39954700 39954700 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033171 exon4 c.G344A p.R115Q . . . B3GALT5 10317 broad.mit.edu 36 21 39955034 39955034 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033171 exon4 c.G678A p.A226A . . . B3GALT5 10317 broad.mit.edu 36 21 39955218 39955218 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033171 exon4 c.A862G p.K288E . . . IGSF5 150084 broad.mit.edu 36 21 40059401 40059401 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080444 exon3 c.G170A p.R57H . . . IGSF5 150084 broad.mit.edu 36 21 40073100 40073100 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080444 exon5 c.G932T p.R311I . . . DSCAM 1826 broad.mit.edu 36 21 40307145 40307145 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001389 exon33 c.T5725G p.F1909V . . . DSCAM 1826 broad.mit.edu 36 21 40368916 40368916 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001389 exon27 c.C4806T p.I1602I . . . DSCAM 1826 broad.mit.edu 36 21 40372506 40372506 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001389 exon26 c.C4689T p.F1563F . . . DSCAM 1826 broad.mit.edu 36 21 40379492 40379492 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001389 exon23 c.C4039T p.R1347C . . . DSCAM 1826 broad.mit.edu 36 21 40483032 40483032 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001389 exon12 c.C2360A p.P787H . . . MX2 4600 broad.mit.edu 36 21 41700680 41700680 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002463 exon13 c.T1790G p.F597C . . . TMPRSS2 7113 broad.mit.edu 36 21 41774311 41774311 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135099 exon6 c.G645T p.E215D . . . UMODL1 89766 broad.mit.edu 36 21 42395373 42395373 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199527 exon8 c.G999T p.K333N . . . ABCG1 9619 broad.mit.edu 36 21 42587768 42587768 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207629 exon14 c.C1692A p.F564L . . . ABCG1 9619 broad.mit.edu 36 21 42589352 42589352 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207629 exon15 c.C1773T p.F591F . . . UBASH3A 53347 broad.mit.edu 36 21 42709766 42709766 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001895 exon5 c.G700T p.D234Y . . . UBASH3A 53347 broad.mit.edu 36 21 42737813 42737813 + Silent SNP C T T rs61735848 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001895 exon13 c.C1725T p.L575L . . . RSPH1 89765 broad.mit.edu 36 21 42786155 42786155 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080860 exon2 c.G158T p.R53I . . . PDE9A 5152 broad.mit.edu 36 21 43054058 43054058 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001574 exon11 c.G799A p.D267N . . . WDR4 10785 broad.mit.edu 36 21 43166753 43166753 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033661 exon3 c.A273G p.K91K . . . NDUFV3 4731 broad.mit.edu 36 21 43190133 43190133 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001503 exon2 c.C76T p.R26X . . . U2AF1 7307 broad.mit.edu 36 21 43386411 43386411 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006758 exon8 c.G593A p.R198Q . . . DNMT3L 29947 broad.mit.edu 36 21 44495985 44495985 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175867 exon9 c.C718A p.L240I . . . TRPM2 7226 broad.mit.edu 36 21 44658292 44658292 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003307 exon20 c.C3053T p.P1018L . . . C21orf29 54084 broad.mit.edu 36 21 44770100 44770100 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144991 exon8 c.C1200A p.F400L . . . C21orf29 54084 broad.mit.edu 36 21 44771669 44771669 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144991 exon7 c.C1083T p.F361F . . . KRTAP10-7 386675 broad.mit.edu 36 21 44845952 44845952 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198689 exon2 c.G988A p.A330T . . . MCM3AP 8888 broad.mit.edu 36 21 46479731 46479731 + Missense_Mutation SNP G A A rs17183403 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003906 exon28 c.C5822T p.A1941V . . . MCM3AP 8888 broad.mit.edu 36 21 46485307 46485307 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003906 exon26 c.C5479T p.L1827F . . . MCM3AP 8888 broad.mit.edu 36 21 46528437 46528437 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003906 exon1 c.G1192T p.E398X . . . DIP2A 23181 broad.mit.edu 36 21 46729101 46729101 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001146115 exon2 c.A95G p.D32G . . . TPTE 7179 broad.mit.edu 36 21 9938249 9938249 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199259 exon19 c.C1214T p.S405L . . . TPTE 7179 broad.mit.edu 36 21 9964875 9964875 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199259 exon11 c.C529T p.R177X . . . TPTE 7179 broad.mit.edu 36 21 9973264 9973264 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_199259 exon9 c.A265G p.T89A . . . AKTIP 64400 broad.mit.edu 36 16 52085585 52085588 + Frame_Shift_Del DEL CAAA - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_022476 exon8 c.673_676del p.225_226del . . . ATF7IP2 80063 broad.mit.edu 36 16 10432251 10432251 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024997 exon2 c.C273A p.F91L . . . EMP2 2013 broad.mit.edu 36 16 10539422 10539422 + Silent SNP C T T rs61731468 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001424 exon4 c.G180A p.T60T . . . TEKT5 146279 broad.mit.edu 36 16 10683428 10683428 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144674 exon4 c.C786T p.I262I . . . TEKT5 146279 broad.mit.edu 36 16 10695943 10695943 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_144674 exon1 c.T289C p.S97P . . . NPRL3 8131 broad.mit.edu 36 16 107326 107326 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077350 exon5 c.C367A p.L123I . . . CIITA 4261 broad.mit.edu 36 16 10909067 10909067 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000246 exon11 c.G2217T p.L739F . . . CLEC16A 23274 broad.mit.edu 36 16 11026242 11026242 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015226 exon12 c.C1500T p.F500F . . . CLEC16A 23274 broad.mit.edu 36 16 11048680 11048680 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015226 exon16 c.G1846T p.D616Y . . . CLEC16A 23274 broad.mit.edu 36 16 11179835 11179835 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015226 exon23 c.C2949T p.L983L . . . TNP2 7142 broad.mit.edu 36 16 11270380 11270380 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005425 exon1 c.C241T p.R81C . . . PRM2 5620 broad.mit.edu 36 16 11277605 11277605 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002762 exon1 c.G124A p.E42K . . . TXNDC11 51061 broad.mit.edu 36 16 11681169 11681169 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015914 exon12 c.G2260A p.E754K . . . ZC3H7A 29066 broad.mit.edu 36 16 11763330 11763330 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014153 exon18 c.G2150T p.R717I . . . RUNDC2A 84127 broad.mit.edu 36 16 12047755 12047755 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032167 exon6 c.G442T p.D148Y . . . SNX29 92017 broad.mit.edu 36 16 12399813 12399813 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080530 exon10 c.G754T p.D252Y . . . UBE2I 7329 broad.mit.edu 36 16 1310199 1310199 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_194259 exon6 c.C247A p.H83N . . . ERCC4 2072 broad.mit.edu 36 16 13932097 13932097 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005236 exon5 c.G822A p.W274X . . . MKL2 57496 broad.mit.edu 36 16 14214916 14214916 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014048 exon6 c.T290C p.L97S . . . MKL2 57496 broad.mit.edu 36 16 14247849 14247849 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014048 exon12 c.G1231T p.E411X . . . MKL2 57496 broad.mit.edu 36 16 14248361 14248361 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014048 exon12 c.C1743T p.I581I . . . PDXDC1 23042 broad.mit.edu 36 16 15010165 15010165 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015027 exon7 c.G608A p.R203H . . . MPV17L 255027 broad.mit.edu 36 16 15409354 15409354 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173803 exon3 c.C404A p.S135Y . . . C16orf45 89927 broad.mit.edu 36 16 15582587 15582587 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142469 exon4 c.C266A p.T89N . . . IFT140 9742 broad.mit.edu 36 16 1573320 1573320 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014714 exon12 c.T1428C p.S476S . . . MYH11 4629 broad.mit.edu 36 16 15736796 15736796 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040114 exon27 c.G3455A p.G1152D . . . MYH11 4629 broad.mit.edu 36 16 15739975 15739975 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040114 exon25 c.G3090T p.K1030N . . . MYH11 4629 broad.mit.edu 36 16 15777476 15777476 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040114 exon9 c.C870A p.I290I . . . MYH11 4629 broad.mit.edu 36 16 15786056 15786056 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040114 exon6 c.C654T p.Y218Y . . . MYH11 4629 broad.mit.edu 36 16 15824767 15824767 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040114 exon3 c.G348A p.T116T . . . MYH11 4629 broad.mit.edu 36 16 15839606 15839606 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040114 exon2 c.C5T p.A2V . . . ABCC1 4363 broad.mit.edu 36 16 16116387 16116387 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019862 exon22 c.G3166A p.A1056T . . . ABCC1 4363 broad.mit.edu 36 16 16135765 16135765 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019862 exon27 c.C3847T p.R1283W . . . XYLT1 64131 broad.mit.edu 36 16 17119042 17119042 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022166 exon11 c.C2519T p.A840V . . . XYLT1 64131 broad.mit.edu 36 16 17142657 17142657 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022166 exon7 c.C1441T p.R481W . . . C16orf73 254528 broad.mit.edu 36 16 1843095 1843095 + 5'UTR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152764 exon9 c.C724T p.R242W . . . NOMO2 283820 broad.mit.edu 36 16 18439602 18439602 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004060 exon19 c.C2259A p.F753L . . . RPS15A 6210 broad.mit.edu 36 16 18703587 18703587 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030009 exon4 c.T273G p.N91K . . . ARL6IP1 23204 broad.mit.edu 36 16 18712192 18712192 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015161 exon6 c.G495T p.V165V . . . SMG1 23049 broad.mit.edu 36 16 18736250 18736250 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015092 exon57 c.G9938A p.R3313Q . . . SMG1 23049 broad.mit.edu 36 16 18766803 18766803 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015092 exon37 c.G5677T p.E1893X . . . SMG1 23049 broad.mit.edu 36 16 18788710 18788710 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015092 exon19 c.G2600A p.S867N . . . SYT17 51760 broad.mit.edu 36 16 19143590 19143590 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016524 exon7 c.C1157A p.P386H . . . RPL3L 6123 broad.mit.edu 36 16 1935894 1935894 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005061 exon8 c.C990T p.F330F . . . TMC5 79838 broad.mit.edu 36 16 19382805 19382805 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024780 exon4 c.G705T p.K235N . . . CP110 9738 broad.mit.edu 36 16 19455663 19455663 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014711 exon5 c.A1171C p.N391H . . . C16orf62 57020 broad.mit.edu 36 16 19535583 19535583 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020314 exon14 c.G1443A p.P481P . . . IQCK 124152 broad.mit.edu 36 16 19745951 19745951 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153208 exon9 c.G793T p.E265X . . . GFER 2671 broad.mit.edu 36 16 1975970 1975970 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005262 exon3 c.C558T p.F186F . . . GP2 2813 broad.mit.edu 36 16 20234821 20234821 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007242 exon8 c.G1018A p.D340N . . . PDILT 204474 broad.mit.edu 36 16 20279409 20279409 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174924 exon11 c.G1488T p.K496N . . . PDILT 204474 broad.mit.edu 36 16 20288362 20288362 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174924 exon8 c.G1069A p.E357K . . . PDILT 204474 broad.mit.edu 36 16 20288485 20288485 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174924 exon8 c.G946A p.E316K . . . PDILT 204474 broad.mit.edu 36 16 20291850 20291850 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174924 exon6 c.C777A p.I259I . . . ACSM5 54988 broad.mit.edu 36 16 20355933 20355933 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017888 exon11 c.G1367A p.R456Q . . . ACSM1 116285 broad.mit.edu 36 16 20590458 20590458 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052956 exon4 c.G648T p.K216N . . . ACSM1 116285 broad.mit.edu 36 16 20609929 20609929 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052956 exon1 c.G83A p.R28H . . . ACSM3 6296 broad.mit.edu 36 16 20699798 20699798 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005622 exon6 c.T784C p.F262L . . . DNAH3 55567 broad.mit.edu 36 16 20883263 20883263 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017539 exon53 c.A9444G p.K3148K . . . DNAH3 55567 broad.mit.edu 36 16 20906597 20906597 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017539 exon46 c.G6801A p.S2267S . . . DNAH3 55567 broad.mit.edu 36 16 20938564 20938564 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017539 exon41 c.G5905A p.A1969T . . . DNAH3 55567 broad.mit.edu 36 16 20988395 20988395 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017539 exon23 c.C3223T p.R1075C . . . DNAH3 55567 broad.mit.edu 36 16 20994338 20994338 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017539 exon21 c.G3015T p.E1005D . . . DNAH3 55567 broad.mit.edu 36 16 21036095 21036095 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017539 exon12 c.G1744T p.E582X . . . ZP2 7783 broad.mit.edu 36 16 21118408 21118408 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003460 exon16 c.C1911A p.S637S . . . OTOA 146183 broad.mit.edu 36 16 21624012 21624012 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144672 exon11 c.C1002A p.F334L . . . MLST8 64223 broad.mit.edu 36 16 2196575 2196575 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199174 exon4 c.G258T p.K86N . . . VWA3A 146177 broad.mit.edu 36 16 22060471 22060471 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173615 exon24 c.G2451T p.E817D . . . EEF2K 29904 broad.mit.edu 36 16 22185270 22185270 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013302 exon14 c.C1499T p.S500L . . . CDR2 1039 broad.mit.edu 36 16 22266183 22266183 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001802 exon5 c.C969T p.I323I . . . CDR2 1039 broad.mit.edu 36 16 22283730 22283730 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001802 exon2 c.A186C p.E62D . . . ABCA3 21 broad.mit.edu 36 16 2276752 2276752 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001089 exon22 c.C3222A p.V1074V . . . HS3ST2 9956 broad.mit.edu 36 16 22834379 22834379 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006043 exon2 c.G1099T p.E367X . . . ABCA3 21 broad.mit.edu 36 16 2298457 2298457 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001089 exon11 c.C1280T p.A427V . . . USP31 57478 broad.mit.edu 36 16 22987162 22987162 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020718 exon16 c.T3765G p.G1255G . . . USP31 57478 broad.mit.edu 36 16 22992618 22992618 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020718 exon14 c.C2261T p.T754M . . . ABCA3 21 broad.mit.edu 36 16 2309688 2309688 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001089 exon8 c.C768T p.L256L . . . SCNN1G 6340 broad.mit.edu 36 16 23134042 23134042 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039 exon13 c.G1701T p.Q567H . . . SCNN1B 6338 broad.mit.edu 36 16 23271640 23271640 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000336 exon3 c.A329G p.H110R . . . COG7 91949 broad.mit.edu 36 16 23322570 23322570 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153603 exon13 c.C1749T p.F583F . . . COG7 91949 broad.mit.edu 36 16 23324948 23324948 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153603 exon12 c.G1612T p.D538Y . . . PALB2 79728 broad.mit.edu 36 16 23548718 23548718 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024675 exon5 c.G2258A p.R753Q . . . PALB2 79728 broad.mit.edu 36 16 23554827 23554827 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024675 exon4 c.G541T p.E181X . . . PALB2 79728 broad.mit.edu 36 16 23556943 23556943 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024675 exon2 c.G57T p.E19D . . . PLK1 5347 broad.mit.edu 36 16 23599003 23599003 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005030 exon2 c.G506A p.R169Q . . . PLK1 5347 broad.mit.edu 36 16 23602852 23602852 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005030 exon5 c.C977T p.S326L . . . PRKCB 5579 broad.mit.edu 36 16 24042759 24042759 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212535 exon9 c.G1021A p.D341N . . . CACNG3 10368 broad.mit.edu 36 16 24175759 24175759 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006539 exon1 c.G183T p.S61S . . . CACNG3 10368 broad.mit.edu 36 16 24280388 24280388 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006539 exon4 c.G651T p.K217N . . . RBBP6 5930 broad.mit.edu 36 16 24485982 24485982 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018703 exon15 c.G1607A p.R536Q . . . RBBP6 5930 broad.mit.edu 36 16 24486271 24486271 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018703 exon15 c.A1896T p.Q632H . . . RBBP6 5930 broad.mit.edu 36 16 24488697 24488697 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018703 exon16 c.C3083T p.A1028V . . . RBBP6 5930 broad.mit.edu 36 16 24490203 24490203 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018703 exon17 c.A4213C p.N1405H . . . TNRC6A 27327 broad.mit.edu 36 16 24695889 24695889 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014494 exon5 c.C298A p.Q100K . . . TNRC6A 27327 broad.mit.edu 36 16 24728277 24728277 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014494 exon18 c.C4646A p.S1549Y . . . TNRC6A 27327 broad.mit.edu 36 16 24738991 24738991 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014494 exon22 c.C5111T p.S1704F . . . TNRC6A 27327 broad.mit.edu 36 16 24742502 24742502 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014494 exon25 c.C5762T p.T1921I . . . SLC5A11 115584 broad.mit.edu 36 16 24825552 24825552 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052944 exon11 c.G1080A p.A360A . . . ARHGAP17 55114 broad.mit.edu 36 16 24858363 24858363 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001006634 exon17 c.G1547T p.R516I . . . AQP8 343 broad.mit.edu 36 16 25140300 25140300 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001169 exon3 c.G282A p.A94A . . . HS3ST4 9951 broad.mit.edu 36 16 26054449 26054449 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006040 exon2 c.G750T p.K250N . . . Unknown 0 broad.mit.edu 36 16 26986090 26986090 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001145545 exon1 c.C273T p.Y91Y . . . NSMCE1 197370 broad.mit.edu 36 16 27144050 27144050 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145080 exon8 c.G730A p.D244N . . . IL21R 50615 broad.mit.edu 36 16 27367503 27367503 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181079 exon10 c.G1081A p.E361K . . . GTF3C1 2975 broad.mit.edu 36 16 27383526 27383526 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001520 exon34 c.G5488T p.E1830X . . . SRRM2 23524 broad.mit.edu 36 16 2753313 2753313 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016333 exon11 c.G2783T p.R928I . . . SRRM2 23524 broad.mit.edu 36 16 2753980 2753980 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016333 exon11 c.G3450A p.S1150S . . . SRRM2 23524 broad.mit.edu 36 16 2754965 2754965 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016333 exon11 c.G4435A p.E1479K . . . SRRM2 23524 broad.mit.edu 36 16 2756537 2756537 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016333 exon11 c.C6007T p.R2003X . . . SRRM2 23524 broad.mit.edu 36 16 2757976 2757976 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016333 exon11 c.G7446A p.T2482T . . . KIAA0556 23247 broad.mit.edu 36 16 27668474 27668474 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015202 exon16 c.G2692A p.E898K . . . KIAA0556 23247 broad.mit.edu 36 16 27669026 27669026 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015202 exon16 c.C3244T p.R1082W . . . KIAA0556 23247 broad.mit.edu 36 16 27695780 27695780 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015202 exon25 c.C4480T p.P1494S . . . KIAA0556 23247 broad.mit.edu 36 16 27697443 27697443 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015202 exon28 c.C4849T p.R1617C . . . GSG1L 146395 broad.mit.edu 36 16 27882014 27882014 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001109763 exon2 c.C361T p.R121C . . . XPO6 23214 broad.mit.edu 36 16 28030809 28030809 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015171 exon17 c.G2171A p.R724Q . . . PRSS21 10942 broad.mit.edu 36 16 2808817 2808817 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006799 exon4 c.G396A p.G132G . . . PRSS22 64063 broad.mit.edu 36 16 2843915 2843915 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022119 exon5 c.G669T p.E223D . . . NUPR1 26471 broad.mit.edu 36 16 28456903 28456903 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042483 exon2 c.G241A p.E81K . . . ATXN2L 11273 broad.mit.edu 36 16 28748714 28748714 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_148415 exon8 c.C868T p.R290C . . . ATXN2L 11273 broad.mit.edu 36 16 28753351 28753351 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_148415 exon18 c.G2269A p.D757N . . . RABEP2 79874 broad.mit.edu 36 16 28824556 28824556 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024816 exon11 c.G1461A p.E487E . . . RABEP2 79874 broad.mit.edu 36 16 28838623 28838623 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024816 exon3 c.G417T p.E139D . . . FAM57B 83723 broad.mit.edu 36 16 29944589 29944589 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031478 exon4 c.G499A p.V167I . . . MYLPF 29895 broad.mit.edu 36 16 30295246 30295246 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013292 exon4 c.C174T p.G58G . . . ITGAL 3683 broad.mit.edu 36 16 30398185 30398185 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002209 exon6 c.C478A p.L160M . . . ITGAL 3683 broad.mit.edu 36 16 30415264 30415264 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114380 exon13 c.G1459T p.E487X . . . ITGAL 3683 broad.mit.edu 36 16 30415380 30415380 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001114380 exon13 c.C1575T p.I525I . . . ITGAL 3683 broad.mit.edu 36 16 30423009 30423009 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114380 exon16 c.G1909T p.D637Y . . . ZNF764 92595 broad.mit.edu 36 16 30476664 30476664 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001172679 exon2 c.C201T p.I67I . . . SRCAP 10847 broad.mit.edu 36 16 30643168 30643168 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006662 exon25 c.C4922A p.S1641Y . . . SETD1A 9739 broad.mit.edu 36 16 30890511 30890511 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014712 exon13 c.G3328A p.E1110K . . . STX1B 112755 broad.mit.edu 36 16 30912229 30912229 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052874 exon8 c.G615T p.E205D . . . ZNF205 7755 broad.mit.edu 36 16 3105384 3105384 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042428 exon3 c.G85A p.E29K . . . PRSS36 146547 broad.mit.edu 36 16 31060663 31060663 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173502 exon11 c.C1641T p.G547G . . . ITGAM 3684 broad.mit.edu 36 16 31194505 31194505 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000632 exon9 c.G993T p.K331N . . . ITGAM 3684 broad.mit.edu 36 16 31216350 31216350 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000632 exon13 c.C1371T p.F457F . . . ITGAX 3687 broad.mit.edu 36 16 31279907 31279907 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000887 exon9 c.G884T p.R295I . . . ITGAD 3681 broad.mit.edu 36 16 31342007 31342007 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005353 exon24 c.G2852A p.R951Q . . . ZNF267 10308 broad.mit.edu 36 16 31834324 31834324 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003414 exon4 c.G1253A p.R418H . . . MEFV 4210 broad.mit.edu 36 16 3233325 3233325 + Silent SNP G A A rs11466047 by-frequency,by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000243 exon10 c.C2163T p.F721F . . . MEFV 4210 broad.mit.edu 36 16 3237077 3237077 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000243 exon5 c.C1527T p.L509L . . . ZNF263 10127 broad.mit.edu 36 16 3274056 3274056 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005741 exon1 c.G237T p.Q79H . . . ZNF263 10127 broad.mit.edu 36 16 3280036 3280036 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005741 exon6 c.G1529T p.R510I . . . ZNF263 10127 broad.mit.edu 36 16 3280116 3280116 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005741 exon6 c.G1609A p.E537K . . . ZNF263 10127 broad.mit.edu 36 16 3280261 3280261 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005741 exon6 c.G1754A p.R585Q . . . CLUAP1 23059 broad.mit.edu 36 16 3496344 3496344 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015041 exon3 c.G147T p.Q49H . . . CLUAP1 23059 broad.mit.edu 36 16 3509975 3509975 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024793 exon3 c.C153T p.I51I . . . SLX4 84464 broad.mit.edu 36 16 3580009 3580009 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032444 exon12 c.G3631A p.E1211K . . . SLX4 84464 broad.mit.edu 36 16 3580613 3580613 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032444 exon12 c.C3027T p.G1009G . . . SLX4 84464 broad.mit.edu 36 16 3581294 3581294 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032444 exon12 c.C2346T p.L782L . . . SLX4 84464 broad.mit.edu 36 16 3592141 3592141 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032444 exon4 c.G929A p.R310Q . . . TRAP1 10131 broad.mit.edu 36 16 3665374 3665374 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016292 exon8 c.C840T p.F280F . . . CREBBP 1387 broad.mit.edu 36 16 3719579 3719579 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004380 exon31 c.G5470A p.A1824T . . . POLR3K 51728 broad.mit.edu 36 16 37554 37554 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016310 exon3 c.C203T p.S68L . . . CREBBP 1387 broad.mit.edu 36 16 3840776 3840776 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004380 exon2 c.G321A p.P107P . . . CREBBP 1387 broad.mit.edu 36 16 3840861 3840861 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004380 exon2 c.G236T p.G79V . . . ADCY9 115 broad.mit.edu 36 16 4104271 4104271 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001116 exon2 c.G1174T p.E392X . . . ADCY9 115 broad.mit.edu 36 16 4104760 4104760 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001116 exon2 c.G685A p.E229K . . . DNAJA3 9093 broad.mit.edu 36 16 4431409 4431409 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135110 exon4 c.C462T p.Y154Y . . . HMOX2 3163 broad.mit.edu 36 16 4495582 4495582 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002134 exon2 c.C56T p.S19F . . . HMOX2 3163 broad.mit.edu 36 16 4497858 4497858 + Missense_Mutation SNP C A A rs8045851 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002134 exon4 c.C348A p.F116L . . . MYLK3 91807 broad.mit.edu 36 16 45323912 45323912 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182493 exon4 c.G1171T p.E391X . . . C16orf87 388272 broad.mit.edu 36 16 45394378 45394378 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001436 exon4 c.G452T p.R151I . . . C16orf87 388272 broad.mit.edu 36 16 45401116 45401116 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001436 exon3 c.A246C p.E82D . . . DNAJA2 10294 broad.mit.edu 36 16 45556109 45556109 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005880 exon6 c.G689T p.R230I . . . PHKB 5257 broad.mit.edu 36 16 46240550 46240550 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031835 exon19 c.G1710A p.P570P . . . MGRN1 23295 broad.mit.edu 36 16 4647317 4647317 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142291 exon5 c.C513A p.F171L . . . MGRN1 23295 broad.mit.edu 36 16 4663614 4663614 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001142291 exon10 c.G913A p.D305N . . . ABCC12 94160 broad.mit.edu 36 16 46680020 46680020 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033226 exon24 c.G3412A p.D1138N . . . ABCC12 94160 broad.mit.edu 36 16 46703278 46703278 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033226 exon14 c.G2034T p.E678D . . . ABCC12 94160 broad.mit.edu 36 16 46732111 46732111 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033226 exon4 c.C645A p.I215I . . . ABCC11 85320 broad.mit.edu 36 16 46783949 46783949 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145186 exon20 c.A2689G p.N897D . . . SIAH1 6477 broad.mit.edu 36 16 46953799 46953799 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003031 exon2 c.G42A p.S14S . . . C16orf78 123970 broad.mit.edu 36 16 47987895 47987895 + Missense_Mutation SNP G A A rs16947350 by-cluster,by-frequency,by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144602 exon4 c.G455A p.R152Q . . . ZNF423 23090 broad.mit.edu 36 16 48116844 48116844 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015069 exon7 c.C3640A p.L1214I . . . ZNF423 23090 broad.mit.edu 36 16 48227962 48227962 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015069 exon5 c.G2602A p.A868T . . . ZNF423 23090 broad.mit.edu 36 16 48228472 48228472 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015069 exon5 c.G2092A p.D698N . . . ZNF423 23090 broad.mit.edu 36 16 48229093 48229093 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015069 exon5 c.G1471A p.D491N . . . ZNF423 23090 broad.mit.edu 36 16 48229934 48229934 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015069 exon5 c.G630T p.K210N . . . HEATR3 55027 broad.mit.edu 36 16 48693725 48693725 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182922 exon14 c.G1798A p.A600T . . . HEATR3 55027 broad.mit.edu 36 16 48693821 48693821 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182922 exon14 c.G1894T p.E632X . . . ADCY7 113 broad.mit.edu 36 16 48900998 48900998 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114 exon17 c.C2100T p.G700G . . . ADCY7 113 broad.mit.edu 36 16 48903505 48903505 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001114 exon20 c.G2506A p.E836K . . . NKD1 85407 broad.mit.edu 36 16 49223741 49223741 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033119 exon9 c.C744T p.C248C . . . NOD2 64127 broad.mit.edu 36 16 49303778 49303778 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022162 exon4 c.G2455A p.A819T . . . NOD2 64127 broad.mit.edu 36 16 49308004 49308004 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022162 exon5 c.G2468A p.R823H . . . CYLD 1540 broad.mit.edu 36 16 49341249 49341249 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015247 exon4 c.G139T p.G47X . . . CYLD 1540 broad.mit.edu 36 16 49385831 49385831 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015247 exon19 c.G2677A p.D893N . . . SALL1 6299 broad.mit.edu 36 16 49731182 49731182 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002968 exon2 c.T2452G p.F818V . . . SALL1 6299 broad.mit.edu 36 16 49732893 49732893 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002968 exon2 c.C741T p.I247I . . . SEC14L5 9717 broad.mit.edu 36 16 4980861 4980861 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014692 exon5 c.G438T p.K146N . . . C16orf89 146556 broad.mit.edu 36 16 5045345 5045345 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098514 exon6 c.C771A p.F257L . . . CHD9 80205 broad.mit.edu 36 16 51817864 51817864 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025134 exon5 c.C1982A p.S661Y . . . CHD9 80205 broad.mit.edu 36 16 51900204 51900204 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025134 exon34 c.C7111T p.R2371X . . . CHD9 80205 broad.mit.edu 36 16 51916160 51916160 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_025134 exon39 c.T8498G p.I2833S . . . RPGRIP1L 23322 broad.mit.edu 36 16 52197022 52197022 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127897 exon24 c.G3467A p.R1156H . . . RPGRIP1L 23322 broad.mit.edu 36 16 52232495 52232495 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127897 exon19 c.C2909A p.P970H . . . RPGRIP1L 23322 broad.mit.edu 36 16 52240451 52240451 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127897 exon16 c.C2230T p.R744X . . . FTO 79068 broad.mit.edu 36 16 52417538 52417538 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080432 exon3 c.G385A p.E129K . . . IRX3 79191 broad.mit.edu 36 16 52876470 52876470 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024336 exon2 c.G824A p.R275H . . . IRX5 10265 broad.mit.edu 36 16 53524153 53524153 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005853 exon2 c.C492T p.F164F . . . MMP2 4313 broad.mit.edu 36 16 54074517 54074517 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004530 exon2 c.C349T p.P117S . . . MMP2 4313 broad.mit.edu 36 16 54075530 54075530 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004530 exon3 c.G482A p.R161Q . . . SLC6A2 6530 broad.mit.edu 36 16 54248266 54248266 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001172504 exon1 c.G159A p.A53A . . . SLC6A2 6530 broad.mit.edu 36 16 54289417 54289417 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172504 exon9 c.C1368A p.L456L . . . CES5A 221223 broad.mit.edu 36 16 54441038 54441038 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001143685 exon11 c.C1422T p.F474F . . . AMFR 267 broad.mit.edu 36 16 55000992 55000992 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001144 exon3 c.G358T p.D120Y . . . BBS2 583 broad.mit.edu 36 16 55077063 55077063 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031885 exon16 c.G1999T p.E667X . . . BBS2 583 broad.mit.edu 36 16 55111222 55111222 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031885 exon1 c.G54T p.M18I . . . NUP93 9688 broad.mit.edu 36 16 55410130 55410130 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014669 exon6 c.C543T p.I181I . . . NUP93 9688 broad.mit.edu 36 16 55423729 55423729 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014669 exon12 c.G1273A p.D425N . . . CPNE2 221184 broad.mit.edu 36 16 55728583 55728583 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152727 exon14 c.C1190T p.A397V . . . RSPRY1 89970 broad.mit.edu 36 16 55812783 55812783 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133368 exon10 c.C1116A p.V372V . . . RSPRY1 89970 broad.mit.edu 36 16 55822612 55822612 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133368 exon13 c.C1409A p.S470X . . . ARL2BP 23568 broad.mit.edu 36 16 55843603 55843603 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012106 exon6 c.T415G p.L139V . . . CCL22 6367 broad.mit.edu 36 16 55954977 55954977 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002990 exon3 c.G258T p.M86I . . . CX3CL1 6376 broad.mit.edu 36 16 55973943 55973943 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002996 exon3 c.C692T p.A231V . . . COQ9 57017 broad.mit.edu 36 16 56042606 56042606 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020312 exon2 c.C227T p.S76F . . . GPR56 9289 broad.mit.edu 36 16 56247294 56247294 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145774 exon8 c.G906T p.K302N . . . KIFC3 3801 broad.mit.edu 36 16 56363000 56363000 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130100 exon5 c.C481T p.R161C . . . TEPP 374739 broad.mit.edu 36 16 56569369 56569369 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199456 exon2 c.C313T p.R105C . . . MMP15 4324 broad.mit.edu 36 16 56632070 56632070 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002428 exon5 c.G877A p.E293K . . . CCDC113 29070 broad.mit.edu 36 16 56849813 56849813 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142302 exon3 c.C269T p.S90L . . . CCDC113 29070 broad.mit.edu 36 16 56871130 56871130 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142302 exon8 c.G920A p.R307Q . . . GINS3 64785 broad.mit.edu 36 16 56984057 56984057 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001126130 exon1 c.G51T p.E17D . . . CNOT1 23019 broad.mit.edu 36 16 57131246 57131246 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016284 exon35 c.G4919A p.R1640Q . . . CNOT1 23019 broad.mit.edu 36 16 57135151 57135151 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206999 exon31 c.C4295T p.S1432L . . . CNOT1 23019 broad.mit.edu 36 16 57141175 57141175 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206999 exon25 c.G3471T p.K1157N . . . CNOT1 23019 broad.mit.edu 36 16 57174212 57174212 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_206999 exon10 c.G1030A p.V344I . . . CDH8 1006 broad.mit.edu 36 16 60380877 60380877 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001796 exon8 c.G1288A p.D430N . . . CDH11 1009 broad.mit.edu 36 16 63596251 63596251 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001797 exon3 c.A23G p.Q8R . . . TK2 7084 broad.mit.edu 36 16 65108555 65108555 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172643 exon8 c.G510T p.E170D . . . CMTM2 146225 broad.mit.edu 36 16 65178482 65178482 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199317 exon2 c.C367A p.L123I . . . DYNC1LI2 1783 broad.mit.edu 36 16 65334063 65334063 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006141 exon4 c.G308A p.R103H . . . NAE1 8883 broad.mit.edu 36 16 65414971 65414971 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018159 exon6 c.G265T p.E89X . . . CA7 766 broad.mit.edu 36 16 65444193 65444193 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005182 exon6 c.C594T p.G198G . . . PDP2 57546 broad.mit.edu 36 16 65476109 65476109 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020786 exon2 c.G421A p.D141N . . . CDH16 1014 broad.mit.edu 36 16 65499844 65499844 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004062 exon18 c.G2442T p.K814N . . . SLC9A5 6553 broad.mit.edu 36 16 65848092 65848092 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004594 exon6 c.C1131T p.L377L . . . PLEKHG4 25894 broad.mit.edu 36 16 65872539 65872539 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001129727 exon6 c.G764A p.R255Q . . . PLEKHG4 25894 broad.mit.edu 36 16 65876248 65876248 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001129727 exon14 c.G1824T p.K608N . . . KCTD19 146212 broad.mit.edu 36 16 65893283 65893283 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100915 exon5 c.C687A p.F229L . . . LRRC36 55282 broad.mit.edu 36 16 65968255 65968255 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018296 exon11 c.G1785A p.A595A . . . ATP6V0D1 9114 broad.mit.edu 36 16 66036008 66036008 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004691 exon3 c.C405T p.F135F . . . FAM65A 79567 broad.mit.edu 36 16 66134189 66134189 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193522 exon13 c.C2011T p.P671S . . . FAM65A 79567 broad.mit.edu 36 16 66135825 66135825 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193522 exon15 c.G2735A p.R912H . . . CTCF 10664 broad.mit.edu 36 16 66208211 66208211 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001191022 exon3 c.C31T p.R11W . . . GFOD2 81577 broad.mit.edu 36 16 66267327 66267327 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030819 exon3 c.C390T p.F130F . . . TSNAXIP1 55815 broad.mit.edu 36 16 66417148 66417148 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018430 exon8 c.G730A p.E244K . . . TSNAXIP1 55815 broad.mit.edu 36 16 66419293 66419293 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018430 exon16 c.G1873A p.E625K . . . DPEP3 64180 broad.mit.edu 36 16 66569948 66569948 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001129758 exon3 c.G572A p.R191H . . . DDX28 55794 broad.mit.edu 36 16 66613414 66613414 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018380 exon1 c.G1193T p.G398V . . . ZFP90 146198 broad.mit.edu 36 16 67149475 67149475 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133458 exon2 c.G107T p.R36M . . . ZFP90 146198 broad.mit.edu 36 16 67155180 67155180 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133458 exon4 c.G989A p.R330Q . . . ZFP90 146198 broad.mit.edu 36 16 67155527 67155527 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133458 exon4 c.G1336A p.E446K . . . ZFP90 146198 broad.mit.edu 36 16 67155741 67155741 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133458 exon4 c.G1550T p.R517I . . . ZFP90 146198 broad.mit.edu 36 16 67156077 67156077 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133458 exon4 c.G1886T p.R629I . . . CDH3 1001 broad.mit.edu 36 16 67287309 67287309 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001793 exon15 c.C2262T p.I754I . . . TMCO7 79613 broad.mit.edu 36 16 67451771 67451771 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024562 exon2 c.G578A p.R193Q . . . TMCO7 79613 broad.mit.edu 36 16 67458534 67458534 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024562 exon4 c.C904T p.R302W . . . CIRH1A 84916 broad.mit.edu 36 16 67756909 67756909 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032830 exon15 c.C1812A p.F604L . . . VPS4A 27183 broad.mit.edu 36 16 67911677 67911677 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013245 exon7 c.C753A p.F251L . . . TERF2 7014 broad.mit.edu 36 16 67962026 67962026 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005652 exon5 c.G575T p.R192I . . . NQO1 1728 broad.mit.edu 36 16 68309653 68309653 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000903 exon3 c.A177G p.K59K . . . WWP2 11060 broad.mit.edu 36 16 68522966 68522966 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199424 exon5 c.C258T p.F86F . . . AARS 16 broad.mit.edu 36 16 68859743 68859743 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001605 exon8 c.G1003A p.A335T . . . DDX19A 55308 broad.mit.edu 36 16 68956523 68956523 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018332 exon7 c.C592T p.R198X . . . SF3B3 23450 broad.mit.edu 36 16 69159704 69159704 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012426 exon22 c.C2970A p.I990I . . . VAC14 55697 broad.mit.edu 36 16 69323010 69323010 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018052 exon14 c.C1550A p.S517Y . . . HYDIN 54768 broad.mit.edu 36 16 69409967 69409967 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon84 c.C14434T p.R4812X . . . HYDIN 54768 broad.mit.edu 36 16 69441996 69441996 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon74 c.C12504T p.C4168C . . . HYDIN 54768 broad.mit.edu 36 16 69465955 69465955 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon64 c.G10699T p.D3567Y . . . HYDIN 54768 broad.mit.edu 36 16 69483050 69483050 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon57 c.C9653T p.A3218V . . . HYDIN 54768 broad.mit.edu 36 16 69495163 69495163 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon52 c.C8712A p.V2904V . . . HYDIN 54768 broad.mit.edu 36 16 69495422 69495422 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon51 c.C8560A p.L2854M . . . HYDIN 54768 broad.mit.edu 36 16 69499763 69499763 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon49 c.C8286T p.F2762F . . . HYDIN 54768 broad.mit.edu 36 16 69500194 69500194 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon48 c.C8073T p.F2691F . . . HYDIN 54768 broad.mit.edu 36 16 69530031 69530031 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon44 c.G6979A p.E2327K . . . HYDIN 54768 broad.mit.edu 36 16 69543962 69543962 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon41 c.G6391A p.E2131K . . . HYDIN 54768 broad.mit.edu 36 16 69566620 69566620 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon31 c.C4689T p.V1563V . . . HYDIN 54768 broad.mit.edu 36 16 69609618 69609618 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon23 c.C3559T p.R1187C . . . HYDIN 54768 broad.mit.edu 36 16 69616837 69616837 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon21 c.G3136A p.A1046T . . . HYDIN 54768 broad.mit.edu 36 16 69619233 69619233 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032821 exon20 c.C2815T p.R939W . . . HYDIN 54768 broad.mit.edu 36 16 69770379 69770379 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032821 exon4 c.C334T p.P112S . . . HYDIN 54768 broad.mit.edu 36 16 69778170 69778170 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032821 exon2 c.C130T p.R44X . . . FTSJD1 55783 broad.mit.edu 36 16 69875489 69875489 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018348 exon3 c.T1836C p.C612C . . . FTSJD1 55783 broad.mit.edu 36 16 69876105 69876105 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018348 exon3 c.A1220C p.K407T . . . FTSJD1 55783 broad.mit.edu 36 16 69877124 69877124 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018348 exon3 c.G201T p.K67N . . . ZNF23 7571 broad.mit.edu 36 16 70040186 70040186 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145911 exon6 c.A1243C p.T415P . . . ZNF19 7567 broad.mit.edu 36 16 70066905 70066905 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006961 exon6 c.G1046T p.R349I . . . CHST4 10164 broad.mit.edu 36 16 70128757 70128757 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166395 exon2 c.C676T p.R226C . . . TAT 6898 broad.mit.edu 36 16 70160186 70160186 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000353 exon11 c.G1153A p.E385K . . . TAT 6898 broad.mit.edu 36 16 70167428 70167428 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000353 exon3 c.G238A p.D80N . . . MARVELD3 91862 broad.mit.edu 36 16 70220782 70220782 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052858 exon2 c.C479T p.S160L . . . AP1G1 164 broad.mit.edu 36 16 70336956 70336956 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030007 exon19 c.T1802A p.I601N . . . AP1G1 164 broad.mit.edu 36 16 70364748 70364748 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030007 exon4 c.G345A p.T115T . . . ZNF821 55565 broad.mit.edu 36 16 70451853 70451853 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017530 exon6 c.C682T p.R228W . . . HP 3240 broad.mit.edu 36 16 70651528 70651528 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001126102 exon5 c.G282T p.K94N . . . DHX38 9785 broad.mit.edu 36 16 70688369 70688369 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014003 exon3 c.G471A p.E157E . . . PMFBP1 83449 broad.mit.edu 36 16 70720191 70720191 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160213 exon15 c.A1519C p.K507Q . . . ZFHX3 463 broad.mit.edu 36 16 71388470 71388470 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006885 exon9 c.G5612A p.S1871N . . . MLKL 197259 broad.mit.edu 36 16 73266408 73266408 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152649 exon10 c.C1332A p.I444I . . . MLKL 197259 broad.mit.edu 36 16 73286892 73286892 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152649 exon2 c.C265A p.L89I . . . LDHD 197257 broad.mit.edu 36 16 73705528 73705528 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153486 exon6 c.C735T p.F245F . . . CFDP1 10428 broad.mit.edu 36 16 74006022 74006022 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006324 exon2 c.A137T p.Q46L . . . TMEM231 79583 broad.mit.edu 36 16 74131540 74131540 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077416 exon6 c.C891T p.F297F . . . CNTNAP4 85445 broad.mit.edu 36 16 75113489 75113489 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033401 exon17 c.C2588A p.S863Y . . . CNTNAP4 85445 broad.mit.edu 36 16 75113633 75113633 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033401 exon17 c.G2732T p.S911I . . . NUDT7 283927 broad.mit.edu 36 16 76333153 76333153 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001105663 exon4 c.C522A p.I174I . . . VAT1L 57687 broad.mit.edu 36 16 76416763 76416763 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020927 exon3 c.C483T p.F161F . . . VAT1L 57687 broad.mit.edu 36 16 76563302 76563302 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020927 exon8 c.C1132A p.L378M . . . RBFOX1 54715 broad.mit.edu 36 16 7683327 7683327 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145893 exon12 c.C1068T p.F356F . . . WWOX 51741 broad.mit.edu 36 16 76870040 76870040 + Intron SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_130791 exon6 c.A556C p.K186Q . . . DYNLRB2 83657 broad.mit.edu 36 16 79134725 79134725 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130897 exon2 c.G55T p.G19X . . . CDYL2 124359 broad.mit.edu 36 16 79276495 79276495 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152342 exon2 c.G57T p.K19N . . . CENPN 55839 broad.mit.edu 36 16 79611252 79611252 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018455 exon6 c.G401A p.R134Q . . . ATMIN 23300 broad.mit.edu 36 16 79635284 79635284 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015251 exon4 c.G1680T p.E560D . . . ATMIN 23300 broad.mit.edu 36 16 79635737 79635737 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015251 exon4 c.C2133A p.F711L . . . ATMIN 23300 broad.mit.edu 36 16 79635954 79635954 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015251 exon4 c.G2350A p.E784K . . . PKD1L2 114780 broad.mit.edu 36 16 79738446 79738446 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052892 exon30 c.G5146T p.E1716X . . . PKD1L2 114780 broad.mit.edu 36 16 79766792 79766792 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052892 exon15 c.G2502T p.E834D . . . PKD1L2 114780 broad.mit.edu 36 16 79768990 79768990 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_052892 exon14 c.T2360C p.V787A . . . PKD1L2 114780 broad.mit.edu 36 16 79780092 79780092 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052892 exon10 c.G1684A p.D562N . . . PKD1L2 114780 broad.mit.edu 36 16 79789999 79789999 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_052892 exon7 c.A1312C p.I438L . . . GAN 8139 broad.mit.edu 36 16 79945624 79945624 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022041 exon3 c.G396A p.E132E . . . GAN 8139 broad.mit.edu 36 16 79945829 79945829 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022041 exon3 c.C601T p.R201X . . . GAN 8139 broad.mit.edu 36 16 79948985 79948985 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022041 exon5 c.C921T p.I307I . . . CMIP 80790 broad.mit.edu 36 16 80292799 80292799 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030629 exon16 c.G1507A p.D503N . . . PLCG2 5336 broad.mit.edu 36 16 80498856 80498856 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002661 exon16 c.G1533T p.Q511H . . . PLCG2 5336 broad.mit.edu 36 16 80499537 80499537 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002661 exon17 c.G1573T p.E525X . . . PLCG2 5336 broad.mit.edu 36 16 80527349 80527349 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002661 exon27 c.G2917A p.D973N . . . HSD17B2 3294 broad.mit.edu 36 16 80626566 80626566 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002153 exon1 c.C36T p.C12C . . . HSD17B2 3294 broad.mit.edu 36 16 80626756 80626756 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002153 exon1 c.G226T p.E76X . . . CDH13 1012 broad.mit.edu 36 16 82371269 82371269 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001257 exon12 c.C1877A p.A626D . . . CDH13 1012 broad.mit.edu 36 16 82386131 82386131 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001257 exon14 c.C2137A p.L713M . . . SLC38A8 146167 broad.mit.edu 36 16 82624538 82624538 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080442 exon3 c.G426A p.P142P . . . MBTPS1 8720 broad.mit.edu 36 16 82661071 82661071 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003791 exon14 c.G1856A p.R619Q . . . MBTPS1 8720 broad.mit.edu 36 16 82690191 82690191 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003791 exon3 c.G389A p.R130Q . . . MBTPS1 8720 broad.mit.edu 36 16 82692809 82692809 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003791 exon2 c.G81T p.K27N . . . WFDC1 58189 broad.mit.edu 36 16 82915541 82915541 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021197 exon5 c.G578A p.R193Q . . . KIAA1609 57707 broad.mit.edu 36 16 83089080 83089080 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020947 exon2 c.G114A p.P38P . . . COTL1 23406 broad.mit.edu 36 16 83158057 83158057 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021149 exon4 c.C324T p.F108F . . . USP10 9100 broad.mit.edu 36 16 83335771 83335771 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005153 exon4 c.C183T p.V61V . . . CRISPLD2 83716 broad.mit.edu 36 16 83458072 83458072 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031476 exon7 c.G778T p.E260X . . . CRISPLD2 83716 broad.mit.edu 36 16 83460005 83460005 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031476 exon8 c.T901C p.S301P . . . KIAA0513 9764 broad.mit.edu 36 16 83673695 83673695 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014732 exon10 c.G1005T p.E335D . . . FAM92B 339145 broad.mit.edu 36 16 83690297 83690297 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198491 exon8 c.C910A p.L304I . . . GINS2 51659 broad.mit.edu 36 16 84272721 84272721 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016095 exon3 c.C273A p.Y91X . . . FOXF1 2294 broad.mit.edu 36 16 85102088 85102088 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001451 exon1 c.C412T p.R138W . . . MTHFSD 64779 broad.mit.edu 36 16 85139590 85139590 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022764 exon4 c.G329T p.R110I . . . CA5A 763 broad.mit.edu 36 16 86493605 86493605 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001739 exon4 c.C482A p.S161Y . . . BANP 54971 broad.mit.edu 36 16 86572205 86572205 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001173543 exon3 c.G133T p.E45X . . . BANP 54971 broad.mit.edu 36 16 86624219 86624219 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001173543 exon9 c.C1043T p.P348L . . . ZNF778 197320 broad.mit.edu 36 16 87821687 87821687 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182531 exon6 c.G1406T p.R469I . . . ANKRD11 29123 broad.mit.edu 36 16 87868837 87868837 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013275 exon11 c.G7599T p.E2533D . . . ANKRD11 29123 broad.mit.edu 36 16 87876106 87876106 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013275 exon9 c.G4345A p.G1449R . . . ANKRD11 29123 broad.mit.edu 36 16 87876274 87876274 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013275 exon9 c.G4177A p.E1393K . . . FANCA 2175 broad.mit.edu 36 16 88409839 88409839 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000135 exon2 c.T136C p.S46P . . . PRDM7 11105 broad.mit.edu 36 16 88654265 88654265 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098173 exon9 c.C1218T p.S406S . . . USP7 7874 broad.mit.edu 36 16 8907874 8907874 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003470 exon13 c.A1338G p.A446A . . . USP7 7874 broad.mit.edu 36 16 8922553 8922553 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003470 exon4 c.G484T p.E162X . . . GRIN2A 2903 broad.mit.edu 36 16 9764698 9764698 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000833 exon14 c.C4204T p.R1402W . . . GRIN2A 2903 broad.mit.edu 36 16 9765599 9765599 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134408 exon13 c.C3303T p.V1101V . . . GRIN2A 2903 broad.mit.edu 36 16 9765895 9765895 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001134408 exon13 c.G3007T p.E1003X . . . GRIN2A 2903 broad.mit.edu 36 16 9823749 9823749 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134408 exon10 c.C2041T p.R681X . . . GRIN2A 2903 broad.mit.edu 36 16 9842432 9842432 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134408 exon6 c.G1359T p.K453N . . . DSEL 92126 broad.mit.edu 36 18 63332228 63332228 + Frame_Shift_Del DEL T - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032160 exon2 c.628delA p.I210fs . . . APCDD1 147495 broad.mit.edu 36 18 10461810 10461810 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153000 exon3 c.G526A p.A176T . . . GNAL 2774 broad.mit.edu 36 18 11862310 11862310 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142339 exon11 c.G844T p.D282Y . . . SPIRE1 56907 broad.mit.edu 36 18 12439837 12439837 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020148 exon16 c.G2029T p.E677X . . . CEP76 79959 broad.mit.edu 36 18 12668336 12668336 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024899 exon10 c.C1395A p.F465L . . . CEP76 79959 broad.mit.edu 36 18 12681450 12681450 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024899 exon7 c.C841T p.R281X . . . CEP76 79959 broad.mit.edu 36 18 12691061 12691061 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024899 exon2 c.G115A p.E39K . . . PTPN2 5771 broad.mit.edu 36 18 12849247 12849247 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080422 exon2 c.C76T p.R26X . . . CEP192 55125 broad.mit.edu 36 18 13061155 13061155 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032142 exon28 c.G5292A p.S1764S . . . C18orf19 125228 broad.mit.edu 36 18 13671703 13671703 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152352 exon2 c.G374A p.R125Q . . . MC2R 4158 broad.mit.edu 36 18 13874645 13874645 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000529 exon2 c.C873A p.I291I . . . MC2R 4158 broad.mit.edu 36 18 13874719 13874719 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000529 exon2 c.T799C p.C267R . . . MC2R 4158 broad.mit.edu 36 18 13875140 13875140 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000529 exon2 c.G378A p.A126A . . . MC2R 4158 broad.mit.edu 36 18 13875386 13875386 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000529 exon2 c.C132T p.I44I . . . MC2R 4158 broad.mit.edu 36 18 13875451 13875451 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000529 exon2 c.C67T p.R23C . . . ZNF519 162655 broad.mit.edu 36 18 14095352 14095352 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145287 exon3 c.G1187T p.R396I . . . ZNF519 162655 broad.mit.edu 36 18 14096001 14096002 + Missense_Mutation DNP AG CT CT novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_145287 exon3 c.537_538AG . . . . ROCK1 6093 broad.mit.edu 36 18 16801868 16801868 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005406 exon26 c.G3035A p.R1012Q . . . ROCK1 6093 broad.mit.edu 36 18 16804364 16804364 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005406 exon23 c.G2763T p.K921N . . . ROCK1 6093 broad.mit.edu 36 18 16825264 16825264 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005406 exon18 c.G2014T p.D672Y . . . ROCK1 6093 broad.mit.edu 36 18 16883178 16883178 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005406 exon4 c.A287C p.K96T . . . ESCO1 114799 broad.mit.edu 36 18 17401947 17401947 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052911 exon5 c.A1637C p.K546T . . . ESCO1 114799 broad.mit.edu 36 18 17407904 17407904 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052911 exon4 c.G899A p.R300Q . . . ESCO1 114799 broad.mit.edu 36 18 17408704 17408704 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052911 exon4 c.G99T p.K33N . . . ABHD3 171586 broad.mit.edu 36 18 17485707 17485707 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138340 exon9 c.C1073T p.T358I . . . ABHD3 171586 broad.mit.edu 36 18 17493215 17493215 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138340 exon6 c.C756T p.F252F . . . ABHD3 171586 broad.mit.edu 36 18 17536315 17536315 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_138340 exon3 c.A469C p.I157L . . . MIB1 57534 broad.mit.edu 36 18 17613511 17613511 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020774 exon6 c.G775A p.E259K . . . MIB1 57534 broad.mit.edu 36 18 17683283 17683283 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020774 exon17 c.C2522A p.S841Y . . . NPC1 4864 broad.mit.edu 36 18 19379096 19379096 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000271 exon12 c.G1773T p.V591V . . . NPC1 4864 broad.mit.edu 36 18 19388922 19388922 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000271 exon9 c.G1351A p.E451K . . . LAMA3 3909 broad.mit.edu 36 18 19676436 19676436 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198129 exon28 c.C3416T p.P1139L . . . LAMA3 3909 broad.mit.edu 36 18 19680286 19680286 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198129 exon31 c.G3747T p.K1249N . . . LAMA3 3909 broad.mit.edu 36 18 19735256 19735256 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127718 exon10 c.G1177T p.E393X . . . LAMA3 3909 broad.mit.edu 36 18 19755516 19755516 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127718 exon24 c.C3151A p.L1051M . . . LAMA3 3909 broad.mit.edu 36 18 19783762 19783762 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127718 exon33 c.G4392T p.K1464N . . . LAMA3 3909 broad.mit.edu 36 18 19784073 19784073 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127718 exon34 c.C4599T p.I1533I . . . TTC39C 125488 broad.mit.edu 36 18 19914834 19914834 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135993 exon5 c.C748T p.R250C . . . HRH4 59340 broad.mit.edu 36 18 20311074 20311074 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143828 exon2 c.G459A p.S153S . . . ZNF521 25925 broad.mit.edu 36 18 21058988 21058988 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015461 exon4 c.C2892T p.C964C . . . ZNF521 25925 broad.mit.edu 36 18 21059547 21059547 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015461 exon4 c.A2333G p.N778S . . . THOC1 9984 broad.mit.edu 36 18 214148 214148 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005131 exon16 c.C1240T p.R414W . . . SS18 6760 broad.mit.edu 36 18 21869836 21869836 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007559 exon8 c.C930T p.Y310Y . . . PSMA8 143471 broad.mit.edu 36 18 22026349 22026349 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144662 exon7 c.G747T p.K249N . . . TAF4B 6875 broad.mit.edu 36 18 22061036 22061036 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005640 exon1 c.G141T p.K47N . . . CHST9 83539 broad.mit.edu 36 18 22750766 22750766 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031422 exon6 c.C787A p.L263I . . . CHST9 83539 broad.mit.edu 36 18 22751152 22751152 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_031422 exon6 c.A401G p.E134G . . . CDH2 1000 broad.mit.edu 36 18 23786151 23786151 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001792 exon16 c.G2685T p.K895N . . . THOC1 9984 broad.mit.edu 36 18 237929 237929 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005131 exon10 c.C706T p.R236X . . . CDH2 1000 broad.mit.edu 36 18 23819679 23819679 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001792 exon12 c.C1786A p.L596I . . . CDH2 1000 broad.mit.edu 36 18 23826742 23826742 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001792 exon9 c.G1219A p.D407N . . . SMCHD1 23347 broad.mit.edu 36 18 2656177 2656177 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015295 exon2 c.G208T p.E70X . . . DSC3 1825 broad.mit.edu 36 18 26858318 26858318 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001941 exon6 c.G770T p.R257I . . . SMCHD1 23347 broad.mit.edu 36 18 2693718 2693718 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015295 exon13 c.T1676G p.F559C . . . DSG1 1828 broad.mit.edu 36 18 27160841 27160841 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001942 exon3 c.G91T p.D31Y . . . DSG1 1828 broad.mit.edu 36 18 27160912 27160912 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001942 exon3 c.C162T p.F54F . . . DSG1 1828 broad.mit.edu 36 18 27168132 27168132 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001942 exon8 c.G974T p.R325I . . . DSG1 1828 broad.mit.edu 36 18 27188566 27188566 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001942 exon15 c.C2409T p.F803F . . . SMCHD1 23347 broad.mit.edu 36 18 2719394 2719394 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015295 exon24 c.G3035T p.R1012I . . . DSG4 147409 broad.mit.edu 36 18 27222331 27222331 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134453 exon4 c.C220T p.R74X . . . DSG4 147409 broad.mit.edu 36 18 27222935 27222935 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134453 exon5 c.C473T p.S158L . . . DSG4 147409 broad.mit.edu 36 18 27226150 27226150 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134453 exon8 c.C854T p.S285L . . . SMCHD1 23347 broad.mit.edu 36 18 2730755 2730755 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015295 exon28 c.C3569A p.S1190Y . . . SMCHD1 23347 broad.mit.edu 36 18 2733906 2733906 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015295 exon29 c.G3781T p.D1261Y . . . SMCHD1 23347 broad.mit.edu 36 18 2762321 2762321 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015295 exon41 c.C5126T p.S1709L . . . TRAPPC8 22878 broad.mit.edu 36 18 27683634 27683634 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014939 exon25 c.C3628A p.P1210T . . . TRAPPC8 22878 broad.mit.edu 36 18 27742853 27742853 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014939 exon7 c.G984T p.K328N . . . SMCHD1 23347 broad.mit.edu 36 18 2774502 2774502 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015295 exon45 c.C5602T p.R1868X . . . FAM59A 64762 broad.mit.edu 36 18 28102072 28102072 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022751 exon6 c.C2388T p.G796G . . . FAM59A 64762 broad.mit.edu 36 18 28121848 28121848 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022751 exon4 c.G710A p.R237H . . . FAM59A 64762 broad.mit.edu 36 18 28144251 28144251 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022751 exon3 c.T296C p.I99T . . . FAM59A 64762 broad.mit.edu 36 18 28226972 28226972 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022751 exon2 c.A146T p.E49V . . . C18orf34 374864 broad.mit.edu 36 18 28808571 28808571 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_198995 exon21 c.A2347G p.M783V . . . EMILIN2 84034 broad.mit.edu 36 18 2881141 2881141 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032048 exon4 c.A1016T p.D339V . . . EMILIN2 84034 broad.mit.edu 36 18 2881316 2881316 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032048 exon4 c.C1191T p.C397C . . . EMILIN2 84034 broad.mit.edu 36 18 2881551 2881551 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032048 exon4 c.C1426T p.R476W . . . EMILIN2 84034 broad.mit.edu 36 18 2881956 2881956 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032048 exon4 c.C1831A p.L611I . . . C18orf34 374864 broad.mit.edu 36 18 29057112 29057112 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001105528 exon17 c.C1888T p.R630X . . . C18orf34 374864 broad.mit.edu 36 18 29079364 29079364 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198995 exon15 c.C1436A p.S479Y . . . LPIN2 9663 broad.mit.edu 36 18 2911588 2911588 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014646 exon18 c.G2385T p.K795N . . . C18orf34 374864 broad.mit.edu 36 18 29127180 29127180 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198995 exon12 c.A1117G p.T373A . . . ASXL3 80816 broad.mit.edu 36 18 29572779 29572779 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030632 exon11 c.G1413T p.K471N . . . ASXL3 80816 broad.mit.edu 36 18 29573020 29573020 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030632 exon11 c.C1654A p.H552N . . . ASXL3 80816 broad.mit.edu 36 18 29573776 29573776 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030632 exon11 c.C2410A p.L804M . . . ASXL3 80816 broad.mit.edu 36 18 29579278 29579278 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030632 exon12 c.G5468A p.R1823Q . . . ASXL3 80816 broad.mit.edu 36 18 29580215 29580215 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030632 exon12 c.C6405A p.T2135T . . . NOL4 8715 broad.mit.edu 36 18 29686848 29686848 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198546 exon10 c.C1681T p.R561X . . . NOL4 8715 broad.mit.edu 36 18 29717346 29717346 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198546 exon9 c.C1391T p.A464V . . . MYOM1 8736 broad.mit.edu 36 18 3065754 3065754 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019856 exon34 c.G4366A p.D1456N . . . MYOM1 8736 broad.mit.edu 36 18 3069256 3069256 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019856 exon33 c.G4281A p.P1427P . . . MYOM1 8736 broad.mit.edu 36 18 3084231 3084231 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019856 exon25 c.G3513T p.E1171D . . . MYOM1 8736 broad.mit.edu 36 18 3092540 3092540 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019856 exon22 c.C3219A p.F1073L . . . ZNF397 84307 broad.mit.edu 36 18 31076557 31076557 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032347 exon2 c.C125A p.T42N . . . ZSCAN30 100101467 broad.mit.edu 36 18 31087620 31087620 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001112734 exon4 c.C1277A p.S426Y . . . MYOM1 8736 broad.mit.edu 36 18 3116851 3116851 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019856 exon18 c.C2551T p.R851C . . . ZNF24 7572 broad.mit.edu 36 18 31171342 31171342 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006965 exon4 c.C959T p.S320L . . . ZNF24 7572 broad.mit.edu 36 18 31173899 31173899 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006965 exon3 c.G460T p.D154Y . . . C18orf21 83608 broad.mit.edu 36 18 31812849 31812849 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031446 exon5 c.A545C p.K182T . . . RPRD1A 55197 broad.mit.edu 36 18 31827182 31827182 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018170 exon7 c.C869A p.S290Y . . . ELP2 55250 broad.mit.edu 36 18 31993745 31993745 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018255 exon15 c.T1584G p.T528T . . . MOCOS 55034 broad.mit.edu 36 18 32037110 32037110 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017947 exon5 c.C978T p.I326I . . . MOCOS 55034 broad.mit.edu 36 18 32100724 32100724 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017947 exon14 c.T2424C p.C808C . . . FHOD3 80206 broad.mit.edu 36 18 32428852 32428852 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025135 exon7 c.G711A p.T237T . . . MYL12A 10627 broad.mit.edu 36 18 3243332 3243332 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006471 exon2 c.G87A p.Q29Q . . . MYL12A 10627 broad.mit.edu 36 18 3245808 3245808 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006471 exon4 c.G408A p.E136E . . . FHOD3 80206 broad.mit.edu 36 18 32459496 32459496 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025135 exon10 c.G982A p.D328N . . . FHOD3 80206 broad.mit.edu 36 18 32459694 32459694 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025135 exon10 c.C1180T p.R394X . . . FHOD3 80206 broad.mit.edu 36 18 32521093 32521093 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025135 exon13 c.G1450T p.D484Y . . . FHOD3 80206 broad.mit.edu 36 18 32578000 32578000 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025135 exon20 c.C3362T p.A1121V . . . FHOD3 80206 broad.mit.edu 36 18 32603364 32603364 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025135 exon24 c.G4214A p.R1405Q . . . PIK3C3 5289 broad.mit.edu 36 18 37838332 37838332 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002647 exon10 c.C999A p.F333L . . . PIK3C3 5289 broad.mit.edu 36 18 37849445 37849445 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002647 exon12 c.A1333C p.I445L . . . SYT4 6860 broad.mit.edu 36 18 39107936 39107936 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020783 exon2 c.G456T p.E152D . . . SYT4 6860 broad.mit.edu 36 18 39108094 39108094 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020783 exon2 c.G298T p.D100Y . . . SETBP1 26040 broad.mit.edu 36 18 40783969 40783969 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015559 exon4 c.G666A p.W222X . . . SETBP1 26040 broad.mit.edu 36 18 40784596 40784596 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015559 exon4 c.C1293A p.I431I . . . SETBP1 26040 broad.mit.edu 36 18 40784746 40784746 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015559 exon4 c.A1443C p.E481D . . . SETBP1 26040 broad.mit.edu 36 18 40786325 40786325 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015559 exon4 c.C3022T p.R1008C . . . SLC14A2 8170 broad.mit.edu 36 18 41459687 41459687 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007163 exon3 c.C192T p.I64I . . . KIAA1632 57724 broad.mit.edu 36 18 41701562 41701562 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020964 exon37 c.T6375G p.I2125M . . . KIAA1632 57724 broad.mit.edu 36 18 41751771 41751771 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020964 exon17 c.T3110G p.F1037C . . . KIAA1632 57724 broad.mit.edu 36 18 41786511 41786511 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020964 exon3 c.G1105A p.D369N . . . KIAA1632 57724 broad.mit.edu 36 18 41788887 41788887 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020964 exon2 c.T479G p.F160C . . . PSTPIP2 9050 broad.mit.edu 36 18 41822708 41822708 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024430 exon14 c.C971A p.S324Y . . . ATP5A1 498 broad.mit.edu 36 18 41923635 41923635 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004046 exon5 c.G545A p.R182Q . . . C18orf25 147339 broad.mit.edu 36 18 42050106 42050106 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008239 exon2 c.G262T p.D88Y . . . RNF165 494470 broad.mit.edu 36 18 42281525 42281525 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152470 exon4 c.G487A p.D163N . . . RNF165 494470 broad.mit.edu 36 18 42290013 42290013 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152470 exon7 c.T895C p.S299P . . . ST8SIA5 29906 broad.mit.edu 36 18 42538625 42538625 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013305 exon2 c.G132T p.R44S . . . ST8SIA5 29906 broad.mit.edu 36 18 42590406 42590406 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013305 exon1 c.T64G p.F22V . . . PIAS2 9063 broad.mit.edu 36 18 42649299 42649299 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004671 exon13 c.C1660A p.L554I . . . TCEB3B 51224 broad.mit.edu 36 18 42813632 42813632 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016427 exon1 c.G2002A p.E668K . . . TCEB3B 51224 broad.mit.edu 36 18 42815562 42815562 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016427 exon1 c.G72A p.P24P . . . KATNAL2 83473 broad.mit.edu 36 18 42849967 42849967 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031303 exon10 c.C790T p.R264W . . . SMAD2 4087 broad.mit.edu 36 18 43628943 43628943 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135937 exon7 c.G808A p.D270N SMAD2,large_intestine,colon,Substitution - Missense,+1 . . ZBTB7C 201501 broad.mit.edu 36 18 43821257 43821257 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039360 exon2 c.G220A p.V74I . . . C18orf32 497661 broad.mit.edu 36 18 45262739 45262739 + 3'UTR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199346 exon3 c.G205T p.E69X . . . C18orf32 497661 broad.mit.edu 36 18 45263987 45263987 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199346 exon2 c.T130C p.S44P . . . MYO5B 4645 broad.mit.edu 36 18 45606918 45606918 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080467 exon40 c.C5468A p.P1823Q . . . MYO5B 4645 broad.mit.edu 36 18 45644701 45644701 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001080467 exon28 c.T3651C p.N1217N . . . MYO5B 4645 broad.mit.edu 36 18 45652565 45652565 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080467 exon27 c.G3573A p.P1191P . . . MYO5B 4645 broad.mit.edu 36 18 45660795 45660795 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080467 exon23 c.C3074T p.A1025V . . . MYO5B 4645 broad.mit.edu 36 18 45772662 45772662 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080467 exon6 c.C750A p.V250V . . . ELAC1 55520 broad.mit.edu 36 18 46764834 46764834 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018696 exon3 c.A528C p.K176N . . . COLEC12 81035 broad.mit.edu 36 18 470712 470712 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130386 exon2 c.G53T p.R18L . . . DCC 1630 broad.mit.edu 36 18 48532470 48532470 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005215 exon2 c.C140A p.S47Y . . . DCC 1630 broad.mit.edu 36 18 48843683 48843683 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005215 exon6 c.G996T p.W332C . . . POLI 11201 broad.mit.edu 36 18 50051785 50051785 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_007195 exon2 c.T173A p.V58E . . . POLI 11201 broad.mit.edu 36 18 50074702 50074702 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007195 exon10 c.C2090A p.S697Y . . . TCF4 6925 broad.mit.edu 36 18 51079696 51079696 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001083962 exon12 c.C989T p.S330L . . . WDR7 23335 broad.mit.edu 36 18 52509450 52509450 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015285 exon8 c.C723T p.F241F . . . WDR7 23335 broad.mit.edu 36 18 52514549 52514549 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015285 exon12 c.G1436A p.R479Q . . . WDR7 23335 broad.mit.edu 36 18 52536326 52536326 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015285 exon13 c.C1712A p.S571Y . . . ST8SIA3 51046 broad.mit.edu 36 18 53175314 53175314 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015879 exon3 c.T475C p.Y159H . . . ST8SIA3 51046 broad.mit.edu 36 18 53175400 53175400 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015879 exon3 c.C561T p.F187F . . . ST8SIA3 51046 broad.mit.edu 36 18 53178401 53178401 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015879 exon4 c.T1038G p.F346L . . . FECH 2235 broad.mit.edu 36 18 53389686 53389686 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012515 exon4 c.G417T p.K139N . . . NARS 4677 broad.mit.edu 36 18 53434074 53434074 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004539 exon3 c.G225A p.M75I . . . ATP8B1 5205 broad.mit.edu 36 18 53468638 53468638 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005603 exon27 c.C3490T p.R1164X . . . ATP8B1 5205 broad.mit.edu 36 18 53487710 53487710 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005603 exon18 c.C1935A p.I645I . . . EPB41L3 23136 broad.mit.edu 36 18 5385673 5385673 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012307 exon20 c.C3007A p.L1003M . . . EPB41L3 23136 broad.mit.edu 36 18 5387241 5387241 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_012307 exon18 c.T2657G p.F886C . . . NEDD4L 23327 broad.mit.edu 36 18 54161270 54161270 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015277 exon15 c.C1470T p.N490N . . . EPB41L3 23136 broad.mit.edu 36 18 5418395 5418395 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012307 exon9 c.C982T p.R328X . . . NEDD4L 23327 broad.mit.edu 36 18 54184253 54184253 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015277 exon20 c.A1816C p.N606H . . . ALPK2 115701 broad.mit.edu 36 18 54300049 54300049 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052947 exon13 c.G6499A p.E2167K . . . ALPK2 115701 broad.mit.edu 36 18 54322284 54322284 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052947 exon11 c.G6106T p.E2036X . . . ALPK2 115701 broad.mit.edu 36 18 54335353 54335353 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052947 exon9 c.G5707T p.D1903Y . . . ALPK2 115701 broad.mit.edu 36 18 54355899 54355899 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052947 exon5 c.G2500T p.E834X . . . ALPK2 115701 broad.mit.edu 36 18 54355937 54355937 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052947 exon5 c.C2462A p.S821Y . . . ALPK2 115701 broad.mit.edu 36 18 54398419 54398419 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052947 exon4 c.C569A p.P190H . . . MALT1 10892 broad.mit.edu 36 18 54514686 54514686 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173844 exon3 c.A485C p.K162T . . . EPB41L3 23136 broad.mit.edu 36 18 5468333 5468333 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012307 exon3 c.C288A p.L96L . . . LMAN1 3998 broad.mit.edu 36 18 55157011 55157011 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005570 exon9 c.C1110A p.I370I . . . LMAN1 3998 broad.mit.edu 36 18 55173554 55173554 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005570 exon3 c.T448G p.F150V . . . CDH20 28316 broad.mit.edu 36 18 57317553 57317553 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031891 exon2 c.C401T p.A134V . . . CDH20 28316 broad.mit.edu 36 18 57368286 57368286 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031891 exon10 c.C1744T p.P582S . . . PIGN 23556 broad.mit.edu 36 18 57975344 57975344 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_176787 exon6 c.A440C p.K147T . . . TNFRSF11A 8792 broad.mit.edu 36 18 58168040 58168040 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003839 exon3 c.C173A p.S58Y . . . ZCCHC2 54877 broad.mit.edu 36 18 58393525 58393525 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017742 exon13 c.G3231T p.Q1077H . . . PHLPP1 23239 broad.mit.edu 36 18 58793743 58793743 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_194449 exon16 c.C3889T p.R1297X . . . KDSR 2531 broad.mit.edu 36 18 59177981 59177981 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002035 exon3 c.G223T p.E75X . . . VPS4B 9525 broad.mit.edu 36 18 59211746 59211746 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004869 exon10 c.G1109A p.R370Q . . . SERPINB12 89777 broad.mit.edu 36 18 59379336 59379336 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080474 exon4 c.G423A p.T141T . . . SERPINB13 5275 broad.mit.edu 36 18 59411147 59411147 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012397 exon5 c.G434A p.R145Q . . . SERPINB4 6318 broad.mit.edu 36 18 59456049 59456049 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002974 exon8 c.G1057A p.E353K . . . SERPINB11 89778 broad.mit.edu 36 18 59538235 59538235 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080475 exon6 c.G484A p.A162T . . . SERPINB11 89778 broad.mit.edu 36 18 59538337 59538337 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080475 exon6 c.G586T p.E196X . . . SERPINB11 89778 broad.mit.edu 36 18 59541497 59541497 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080475 exon8 c.G1063A p.A355T . . . SERPINB2 5055 broad.mit.edu 36 18 59720681 59720681 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002575 exon7 c.G742T p.D248Y . . . SERPINB10 5273 broad.mit.edu 36 18 59736283 59736283 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005024 exon3 c.G339A p.A113A . . . SERPINB10 5273 broad.mit.edu 36 18 59751272 59751272 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005024 exon6 c.A644G p.K215R . . . SERPINB8 5271 broad.mit.edu 36 18 59801934 59801934 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_002640 exon5 c.A566T p.E189V . . . CDH7 1005 broad.mit.edu 36 18 61698817 61698817 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004361 exon12 c.G2065T p.E689X . . . CLUL1 27098 broad.mit.edu 36 18 617181 617181 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014410 exon5 c.C508A p.L170I . . . L3MBTL4 91133 broad.mit.edu 36 18 6229789 6229789 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173464 exon9 c.C635T p.A212V . . . CDH19 28513 broad.mit.edu 36 18 62348161 62348161 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021153 exon9 c.G1359A p.S453S . . . DSEL 92126 broad.mit.edu 36 18 63330433 63330433 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032160 exon2 c.G2423T p.R808I . . . TMX3 54495 broad.mit.edu 36 18 64529606 64529606 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019022 exon3 c.G116A p.R39Q . . . DOK6 220164 broad.mit.edu 36 18 65516702 65516702 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152721 exon5 c.C492A p.I164I . . . DOK6 220164 broad.mit.edu 36 18 65516785 65516785 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152721 exon5 c.C575T p.T192M . . . CD226 10666 broad.mit.edu 36 18 65713950 65713950 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006566 exon4 c.G694A p.E232K . . . RTTN 25914 broad.mit.edu 36 18 65932764 65932764 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173630 exon27 c.G3580T p.E1194X . . . RTTN 25914 broad.mit.edu 36 18 65939789 65939789 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173630 exon26 c.G3511A p.E1171K . . . SOCS6 9306 broad.mit.edu 36 18 66143724 66143724 + Silent SNP C T T rs41535447 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004232 exon2 c.C840T p.F280F . . . TYMS 7298 broad.mit.edu 36 18 662902 662902 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001071 exon7 c.C847T p.R283X . . . NETO1 81832 broad.mit.edu 36 18 68568333 68568333 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138966 exon9 c.C1485T p.I495I . . . NETO1 81832 broad.mit.edu 36 18 68612430 68612430 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138966 exon6 c.G541A p.G181R . . . ARHGAP28 79822 broad.mit.edu 36 18 6872238 6872238 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010000 exon10 c.G916T p.E306X . . . ARHGAP28 79822 broad.mit.edu 36 18 6877207 6877207 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010000 exon11 c.C1028T p.A343V . . . LAMA1 284217 broad.mit.edu 36 18 6933295 6933295 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005559 exon62 c.A8951C p.K2984T . . . LAMA1 284217 broad.mit.edu 36 18 6987744 6987744 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005559 exon33 c.C4803T p.L1601L . . . LAMA1 284217 broad.mit.edu 36 18 7004033 7004033 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005559 exon23 c.C3144T p.L1048L . . . LAMA1 284217 broad.mit.edu 36 18 7007280 7007280 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005559 exon20 c.C2805A p.C935X . . . LAMA1 284217 broad.mit.edu 36 18 7013203 7013203 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005559 exon19 c.C2661T p.D887D . . . ZNF407 55628 broad.mit.edu 36 18 70472134 70472134 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001146190 exon1 c.G171A p.S57S . . . ZNF407 55628 broad.mit.edu 36 18 70472529 70472529 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001146190 exon1 c.G566T p.S189I . . . ZNF407 55628 broad.mit.edu 36 18 70474650 70474650 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001146190 exon1 c.G2687A p.R896H . . . ZNF407 55628 broad.mit.edu 36 18 70476603 70476603 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001146190 exon1 c.G4640A p.R1547Q . . . ZNF407 55628 broad.mit.edu 36 18 70761481 70761481 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017757 exon7 c.G5273A p.R1758H . . . ZADH2 284273 broad.mit.edu 36 18 71042431 71042431 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_175907 exon2 c.T1062G p.N354K . . . TSHZ1 10194 broad.mit.edu 36 18 71128004 71128004 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005786 exon2 c.C1519A p.L507I . . . TSHZ1 10194 broad.mit.edu 36 18 71129256 71129256 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005786 exon2 c.T2771C p.V924A . . . C18orf62 284274 broad.mit.edu 36 18 71268414 71268414 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037331 exon1 c.C93A p.F31L . . . ZNF516 9658 broad.mit.edu 36 18 72219819 72219819 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014643 exon4 c.G3239A p.R1080Q . . . ZNF516 9658 broad.mit.edu 36 18 72221009 72221009 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014643 exon4 c.G2049T p.E683D . . . ZNF236 7776 broad.mit.edu 36 18 72712755 72712755 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_007345 exon5 c.T647A p.I216N . . . ZNF236 7776 broad.mit.edu 36 18 72749308 72749308 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007345 exon14 c.C2336T p.S779L . . . GALR1 2587 broad.mit.edu 36 18 73109793 73109793 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001480 exon3 c.G997T p.E333X . . . SALL3 27164 broad.mit.edu 36 18 74858014 74858014 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_171999 exon3 c.C3607T p.R1203W . . . ATP9B 374868 broad.mit.edu 36 18 75037816 75037816 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198531 exon8 c.G794A p.R265Q . . . NFATC1 4772 broad.mit.edu 36 18 75312004 75312004 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006162 exon5 c.C1652T p.T551M . . . CTDP1 9150 broad.mit.edu 36 18 75571370 75571370 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_048368 exon6 c.G809A p.R270Q . . . CTDP1 9150 broad.mit.edu 36 18 75573964 75573964 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_048368 exon7 c.C868A p.L290I . . . ADNP2 22850 broad.mit.edu 36 18 75994493 75994493 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014913 exon4 c.G206A p.R69Q . . . ADNP2 22850 broad.mit.edu 36 18 75997479 75997479 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014913 exon4 c.G3192T p.K1064N . . . PTPRM 5797 broad.mit.edu 36 18 8075745 8075745 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002845 exon10 c.G1628A p.G543E . . . PTPRM 5797 broad.mit.edu 36 18 8243336 8243336 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_002845 exon17 c.T2639C p.I880T . . . KIAA0802 23255 broad.mit.edu 36 18 8803096 8803096 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015210 exon12 c.C2724A p.V908V . . . ANKRD12 23253 broad.mit.edu 36 18 9185585 9185585 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015208 exon3 c.A124C p.K42Q . . . ANKRD12 23253 broad.mit.edu 36 18 9244422 9244422 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015208 exon9 c.G1157A p.R386Q . . . ANKRD12 23253 broad.mit.edu 36 18 9245570 9245570 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015208 exon9 c.G2305A p.D769N . . . ANKRD12 23253 broad.mit.edu 36 18 9247187 9247187 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015208 exon9 c.C3922T p.R1308X . . . ANKRD12 23253 broad.mit.edu 36 18 9248721 9248721 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015208 exon9 c.C5456T p.S1819F . . . ANKRD12 23253 broad.mit.edu 36 18 9248888 9248888 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015208 exon9 c.C5623A p.L1875I . . . TWSG1 57045 broad.mit.edu 36 18 9386447 9386447 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020648 exon4 c.G393T p.E131D . . . ATP2B2 491 broad.mit.edu 36 3 10404962 10404962 + Frame_Shift_Del DEL T - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001683 exon6 c.906delA p.K302fs . . . APPL1 26060 broad.mit.edu 36 3 57251961 57251961 + Frame_Shift_Del DEL A - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_012096 exon7 c.453delA p.S151fs . . . FANCD2 2177 broad.mit.edu 36 3 10069090 10069090 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033084 exon18 c.A1565G p.D522G . . . FANCD2 2177 broad.mit.edu 36 3 10090024 10090024 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033084 exon28 c.C2693A p.S898Y . . . FANCD2 2177 broad.mit.edu 36 3 10097847 10097847 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033084 exon31 c.C3040A p.H1014N . . . TBC1D23 55773 broad.mit.edu 36 3 101496837 101496837 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199198 exon7 c.G727T p.E243X . . . NIT2 56954 broad.mit.edu 36 3 101547164 101547164 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020202 exon5 c.G382T p.E128X . . . VHL 7428 broad.mit.edu 36 3 10166563 10166563 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198156 exon2 c.G433A p.E145K VHL,kidney,NS,Substitution - Nonsense,0 . . GPR128 84873 broad.mit.edu 36 3 101848255 101848255 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032787 exon10 c.A1263C p.L421F . . . IMPG2 50939 broad.mit.edu 36 3 102430923 102430923 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016247 exon17 c.T3624G p.L1208L . . . IMPG2 50939 broad.mit.edu 36 3 102445980 102445980 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_016247 exon13 c.T1885G p.S629A . . . IMPG2 50939 broad.mit.edu 36 3 102475196 102475196 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016247 exon7 c.T747G p.L249L . . . IMPG2 50939 broad.mit.edu 36 3 102521244 102521244 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016247 exon2 c.G208T p.E70X . . . SENP7 57337 broad.mit.edu 36 3 102531898 102531898 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020654 exon20 c.G2721A p.S907S . . . SENP7 57337 broad.mit.edu 36 3 102539043 102539043 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020654 exon17 c.C2480T p.S827L . . . SENP7 57337 broad.mit.edu 36 3 102545482 102545482 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020654 exon14 c.C1844A p.S615Y . . . SENP7 57337 broad.mit.edu 36 3 102568043 102568043 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020654 exon9 c.G1239T p.E413D . . . SENP7 57337 broad.mit.edu 36 3 102569511 102569511 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020654 exon8 c.C831T p.L277L . . . TATDN2 9797 broad.mit.edu 36 3 10277249 10277249 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014760 exon3 c.G843T p.E281D . . . PCNP 57092 broad.mit.edu 36 3 102794284 102794284 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020357 exon5 c.T534G p.N178K . . . ZBTB11 27107 broad.mit.edu 36 3 102852891 102852891 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014415 exon11 c.G2971T p.E991X . . . ZBTB11 27107 broad.mit.edu 36 3 102856282 102856282 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014415 exon8 c.G2265T p.K755N . . . ZBTB11 27107 broad.mit.edu 36 3 102857665 102857665 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014415 exon7 c.C2164A p.L722I . . . FAM55C 91775 broad.mit.edu 36 3 103018389 103018389 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001134456 exon7 c.A983C p.K328T . . . ZPLD1 131368 broad.mit.edu 36 3 103640119 103640119 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175056 exon2 c.G146T p.R49I . . . ZPLD1 131368 broad.mit.edu 36 3 103659340 103659340 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175056 exon5 c.G583T p.E195X . . . ATP2B2 491 broad.mit.edu 36 3 10418974 10418974 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001683 exon4 c.C456T p.I152I . . . BBX 56987 broad.mit.edu 36 3 108930372 108930372 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142568 exon6 c.C476T p.S159F . . . BBX 56987 broad.mit.edu 36 3 108974639 108974639 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142568 exon11 c.C1381T p.R461X . . . BBX 56987 broad.mit.edu 36 3 108974977 108974977 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142568 exon11 c.A1719G p.K573K . . . HHLA2 11148 broad.mit.edu 36 3 109559559 109559559 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007072 exon6 c.C864A p.F288L . . . MYH15 22989 broad.mit.edu 36 3 109595586 109595586 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014981 exon37 c.C5301A p.A1767A . . . MYH15 22989 broad.mit.edu 36 3 109595667 109595667 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014981 exon37 c.G5220T p.K1740N . . . MYH15 22989 broad.mit.edu 36 3 109630406 109630406 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014981 exon28 c.G3385T p.D1129Y . . . MYH15 22989 broad.mit.edu 36 3 109694061 109694061 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014981 exon10 c.C907A p.L303I . . . KIAA1524 57650 broad.mit.edu 36 3 109780912 109780912 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020890 exon7 c.C724T p.L242F . . . KIAA1524 57650 broad.mit.edu 36 3 109784595 109784595 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020890 exon3 c.T276C p.C92C . . . DZIP3 9666 broad.mit.edu 36 3 109863776 109863776 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014648 exon21 c.G2405A p.G802E . . . TRAT1 50852 broad.mit.edu 36 3 110055389 110055389 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016388 exon6 c.G536A p.R179H . . . MORC1 27136 broad.mit.edu 36 3 110165116 110165116 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014429 exon27 c.A2634C p.E878D . . . MORC1 27136 broad.mit.edu 36 3 110206419 110206419 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014429 exon20 c.C2020A p.Q674K . . . MORC1 27136 broad.mit.edu 36 3 110258967 110258967 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014429 exon13 c.G1088A p.R363Q . . . SLC6A1 6529 broad.mit.edu 36 3 11034551 11034551 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003042 exon4 c.C261A p.F87L . . . PHLDB2 90102 broad.mit.edu 36 3 113175964 113175964 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134439 exon18 c.C3626A p.P1209H . . . TMPRSS7 344805 broad.mit.edu 36 3 113249427 113249427 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042575 exon5 c.C504T p.I168I . . . TMPRSS7 344805 broad.mit.edu 36 3 113252234 113252234 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042575 exon7 c.G739T p.D247Y . . . SLC9A10 285335 broad.mit.edu 36 3 113370570 113370570 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183061 exon25 c.C3081A p.L1027L . . . SLC9A10 285335 broad.mit.edu 36 3 113400953 113400953 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183061 exon20 c.G2428T p.E810X . . . SLC9A10 285335 broad.mit.edu 36 3 113405866 113405866 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_183061 exon17 c.C2061A p.I687I . . . SLC9A10 285335 broad.mit.edu 36 3 113441538 113441538 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183061 exon12 c.C1285T p.R429C . . . CD200 4345 broad.mit.edu 36 3 113551302 113551302 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005944 exon5 c.C748T p.L250F . . . ATG3 64422 broad.mit.edu 36 3 113739355 113739355 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022488 exon9 c.T583G p.L195V . . . SLC35A5 55032 broad.mit.edu 36 3 113782319 113782319 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017945 exon6 c.G665T p.R222I . . . CCDC80 151887 broad.mit.edu 36 3 113841067 113841067 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199511 exon2 c.C376T p.R126W . . . CD200R1 131450 broad.mit.edu 36 3 114130565 114130565 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170780 exon4 c.G488T p.R163I . . . CD200R1 131450 broad.mit.edu 36 3 114176378 114176378 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138939 exon1 c.G17T p.R6I . . . GTPBP8 29083 broad.mit.edu 36 3 114201066 114201066 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014170 exon5 c.A750G p.K250K . . . BOC 91653 broad.mit.edu 36 3 114488295 114488295 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033254 exon20 c.C3241A p.P1081T . . . WDR52 55779 broad.mit.edu 36 3 114598178 114598178 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164496 exon14 c.G1656A p.T552T . . . SPICE1 152185 broad.mit.edu 36 3 114651999 114651999 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144718 exon15 c.G2197T p.E733X . . . SPICE1 152185 broad.mit.edu 36 3 114655151 114655151 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144718 exon14 c.G1994T p.R665I . . . SPICE1 152185 broad.mit.edu 36 3 114695641 114695641 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144718 exon5 c.G330T p.E110D . . . KIAA2018 205717 broad.mit.edu 36 3 114861867 114861867 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009899 exon7 c.C1352A p.S451Y . . . ATP6V1A 523 broad.mit.edu 36 3 114999905 114999905 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001690 exon12 c.C1416T p.F472F . . . GRAMD1C 54762 broad.mit.edu 36 3 115084302 115084302 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017577 exon6 c.C473A p.S158Y . . . ZDHHC23 254887 broad.mit.edu 36 3 115150388 115150388 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173570 exon2 c.G49T p.E17X . . . ZDHHC23 254887 broad.mit.edu 36 3 115155804 115155804 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173570 exon3 c.G729T p.K243N . . . KIAA1407 57577 broad.mit.edu 36 3 115220366 115220366 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020817 exon8 c.C1012A p.L338I . . . DRD3 1814 broad.mit.edu 36 3 115341127 115341127 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033663 exon5 c.C633T p.I211I . . . ZNF80 7634 broad.mit.edu 36 3 115437911 115437911 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007136 exon1 c.G701A p.R234Q . . . ZBTB20 26137 broad.mit.edu 36 3 115553385 115553385 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164343 exon11 c.G11A p.R4H . . . GAP43 2596 broad.mit.edu 36 3 116878024 116878024 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130064 exon3 c.G613A p.D205N . . . C3orf31 132001 broad.mit.edu 36 3 11860644 11860644 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138807 exon2 c.C177T p.V59V . . . ARHGAP31 57514 broad.mit.edu 36 3 120584726 120584726 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020754 exon6 c.C645A p.I215I . . . POGLUT1 56983 broad.mit.edu 36 3 120688448 120688448 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152305 exon7 c.C717T p.N239N . . . CD80 941 broad.mit.edu 36 3 120746295 120746295 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005191 exon3 c.G210T p.K70N . . . POPDC2 64091 broad.mit.edu 36 3 120850188 120850188 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022135 exon3 c.G618T p.E206D . . . C3orf15 89876 broad.mit.edu 36 3 120938921 120938921 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033364 exon11 c.A1363C p.N455H . . . GPR156 165829 broad.mit.edu 36 3 121369460 121369460 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168271 exon9 c.C1542T p.G514G . . . GPR156 165829 broad.mit.edu 36 3 121374992 121374992 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168271 exon8 c.G937T p.A313S . . . SYN2 6854 broad.mit.edu 36 3 12167757 12167757 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003178 exon6 c.C702A p.I234I . . . STXBP5L 9515 broad.mit.edu 36 3 122407463 122407463 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014980 exon10 c.A881C p.K294T . . . STXBP5L 9515 broad.mit.edu 36 3 122456610 122456610 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014980 exon16 c.T1620G p.I540M . . . STXBP5L 9515 broad.mit.edu 36 3 122580342 122580342 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014980 exon22 c.C2338T p.R780C . . . POLQ 10721 broad.mit.edu 36 3 122684976 122684976 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199420 exon18 c.A5917C p.I1973L . . . POLQ 10721 broad.mit.edu 36 3 122690466 122690466 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199420 exon16 c.G4002A p.Q1334Q . . . POLQ 10721 broad.mit.edu 36 3 122691373 122691373 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199420 exon16 c.C3095T p.S1032L . . . POLQ 10721 broad.mit.edu 36 3 122723639 122723639 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199420 exon8 c.G1156T p.E386X . . . ARGFX 503582 broad.mit.edu 36 3 122788132 122788132 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001012659 exon5 c.C943A p.L315I . . . FBXO40 51725 broad.mit.edu 36 3 122823695 122823695 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016298 exon3 c.G729T p.K243N . . . HCLS1 3059 broad.mit.edu 36 3 122833487 122833487 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005335 exon14 c.G1357A p.D453N . . . GOLGB1 2804 broad.mit.edu 36 3 122895297 122895297 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004487 exon13 c.T6748C p.L2250L . . . GOLGB1 2804 broad.mit.edu 36 3 122895372 122895372 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004487 exon13 c.G6673T p.E2225X . . . GOLGB1 2804 broad.mit.edu 36 3 122895594 122895594 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004487 exon13 c.G6451T p.E2151X . . . GOLGB1 2804 broad.mit.edu 36 3 122895708 122895708 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004487 exon13 c.A6337G p.K2113E . . . GOLGB1 2804 broad.mit.edu 36 3 122897570 122897570 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004487 exon13 c.G4475A p.R1492Q . . . GOLGB1 2804 broad.mit.edu 36 3 122898312 122898312 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004487 exon13 c.G3733T p.D1245Y . . . GOLGB1 2804 broad.mit.edu 36 3 122918593 122918593 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004487 exon9 c.G954T p.K318N . . . IQCB1 9657 broad.mit.edu 36 3 122983313 122983313 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001023570 exon13 c.G1377T p.K459N . . . IQCB1 9657 broad.mit.edu 36 3 122983394 122983394 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001023570 exon13 c.G1296A p.A432A . . . SLC15A2 6565 broad.mit.edu 36 3 123096106 123096106 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145998 exon1 c.G93T p.K31N . . . SLC15A2 6565 broad.mit.edu 36 3 123114646 123114646 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145998 exon4 c.G424T p.E142X . . . ILDR1 286676 broad.mit.edu 36 3 123189935 123189935 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175924 exon7 c.G1478A p.S493N . . . CASR 846 broad.mit.edu 36 3 123463861 123463861 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000388 exon4 c.C1289T p.A430V . . . CASR 846 broad.mit.edu 36 3 123477440 123477440 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000388 exon5 c.C1469T p.S490F . . . KPNA1 3836 broad.mit.edu 36 3 123643618 123643618 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002264 exon10 c.G953A p.R318Q . . . KPNA1 3836 broad.mit.edu 36 3 123653150 123653150 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002264 exon8 c.G674A p.R225H . . . PARP9 83666 broad.mit.edu 36 3 123738575 123738575 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001146103 exon9 c.G1801A p.E601K . . . PARP9 83666 broad.mit.edu 36 3 123757578 123757578 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146103 exon4 c.C130T p.R44C . . . PARP15 165631 broad.mit.edu 36 3 123828557 123828557 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152615 exon5 c.C723A p.F241L . . . PARP14 54625 broad.mit.edu 36 3 123886823 123886823 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017554 exon2 c.G289T p.D97Y . . . PARP14 54625 broad.mit.edu 36 3 123893849 123893849 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017554 exon4 c.G367T p.E123X . . . PARP14 54625 broad.mit.edu 36 3 123900950 123900950 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017554 exon6 c.A859C p.K287Q . . . PARP14 54625 broad.mit.edu 36 3 123901335 123901335 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017554 exon6 c.A1244C p.N415T . . . PARP14 54625 broad.mit.edu 36 3 123901927 123901927 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017554 exon6 c.G1836T p.K612N . . . DIRC2 84925 broad.mit.edu 36 3 124047307 124047307 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032839 exon5 c.C841T p.R281X . . . SEMA5B 54437 broad.mit.edu 36 3 124117155 124117155 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031702 exon14 c.C1810T p.R604W . . . CNTN6 27255 broad.mit.edu 36 3 1244508 1244508 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014461 exon4 c.G189T p.K63N . . . ADCY5 111 broad.mit.edu 36 3 124522299 124522299 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183357 exon9 c.G2098T p.D700Y . . . ADCY5 111 broad.mit.edu 36 3 124526996 124526996 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183357 exon8 c.G1951T p.E651X . . . MYLK 4638 broad.mit.edu 36 3 124848941 124848941 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053025 exon27 c.G4439A p.R1480Q . . . MYLK 4638 broad.mit.edu 36 3 124995223 124995223 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_053025 exon4 c.C156T p.F52F . . . KALRN 8997 broad.mit.edu 36 3 125647744 125647744 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003947 exon20 c.C3354A p.F1118L . . . MKRN2 23609 broad.mit.edu 36 3 12588702 12588702 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014160 exon4 c.G472A p.V158M . . . KALRN 8997 broad.mit.edu 36 3 125897704 125897704 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024660 exon54 c.T7611C p.N2537N . . . MKRN2 23609 broad.mit.edu 36 3 12598704 12598704 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014160 exon8 c.C1203T p.L401L . . . ITGB5 3693 broad.mit.edu 36 3 126010660 126010660 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002213 exon9 c.G1162T p.D388Y . . . RAF1 5894 broad.mit.edu 36 3 12601680 12601680 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002880 exon15 c.G1609A p.V537I . . . HEG1 57493 broad.mit.edu 36 3 126172222 126172222 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020733 exon17 c.C4110A p.F1370L . . . HEG1 57493 broad.mit.edu 36 3 126215176 126215176 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020733 exon6 c.C1937T p.S646L . . . RAF1 5894 broad.mit.edu 36 3 12625355 12625355 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002880 exon5 c.G491A p.R164Q . . . ZNF148 7707 broad.mit.edu 36 3 126434257 126434257 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021964 exon9 c.G2003T p.R668I . . . OSBPL11 114885 broad.mit.edu 36 3 126748961 126748961 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022776 exon10 c.T1820G p.F607C . . . OSBPL11 114885 broad.mit.edu 36 3 126777725 126777725 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022776 exon5 c.G664T p.E222X . . . ROPN1B 152015 broad.mit.edu 36 3 127177126 127177126 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012337 exon3 c.G147A p.T49T . . . ALDH1L1 10840 broad.mit.edu 36 3 127305332 127305332 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012190 exon23 c.G2701A p.E901K . . . ALDH1L1 10840 broad.mit.edu 36 3 127339461 127339461 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012190 exon10 c.G1109C p.G370A . . . CCDC37 348807 broad.mit.edu 36 3 127634704 127634704 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182628 exon14 c.C1389A p.V463V . . . UROC1 131669 broad.mit.edu 36 3 127690863 127690863 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144639 exon17 c.G1654A p.D552N . . . RPL32 6161 broad.mit.edu 36 3 12852668 12852668 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007073 exon4 c.C333T p.I111I . . . MCM2 4171 broad.mit.edu 36 3 128808329 128808329 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004526 exon6 c.C1080A p.P360P . . . PODXL2 50512 broad.mit.edu 36 3 128862150 128862150 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015720 exon3 c.G589T p.E197X . . . PODXL2 50512 broad.mit.edu 36 3 128873024 128873024 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015720 exon7 c.C1483T p.R495C . . . MGLL 11343 broad.mit.edu 36 3 128983399 128983399 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007283 exon3 c.G185A p.G62E . . . KBTBD12 166348 broad.mit.edu 36 3 129125163 129125163 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207335 exon1 c.G569T p.R190I . . . KBTBD12 166348 broad.mit.edu 36 3 129129349 129129349 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207335 exon2 c.C1123T p.R375X . . . RUVBL1 8607 broad.mit.edu 36 3 129282863 129282863 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003707 exon11 c.G1291A p.E431K . . . RUVBL1 8607 broad.mit.edu 36 3 129284105 129284105 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003707 exon10 c.C1122T p.I374I . . . EEFSEC 60678 broad.mit.edu 36 3 129463751 129463751 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021937 exon3 c.C615A p.L205L . . . DNAJB8 165721 broad.mit.edu 36 3 129664129 129664129 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153330 exon3 c.C650T p.S217L . . . KIAA1257 57501 broad.mit.edu 36 3 130189185 130189185 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020741 exon4 c.G631T p.G211C . . . COPG 22820 broad.mit.edu 36 3 130465482 130465482 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016128 exon13 c.C1174A p.R392S . . . COPG 22820 broad.mit.edu 36 3 130467138 130467138 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016128 exon14 c.G1281A p.E427E . . . COPG 22820 broad.mit.edu 36 3 130468600 130468600 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016128 exon15 c.G1512T p.E504D . . . IFT122 55764 broad.mit.edu 36 3 130701583 130701583 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052990 exon16 c.A2024G p.D675G . . . IFT122 55764 broad.mit.edu 36 3 130705872 130705872 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052990 exon18 c.G2235T p.K745N . . . RHO 6010 broad.mit.edu 36 3 130730313 130730313 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000539 exon1 c.C47T p.A16V . . . RHO 6010 broad.mit.edu 36 3 130734218 130734218 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000539 exon4 c.C849T p.F283F . . . PLXND1 23129 broad.mit.edu 36 3 130772667 130772667 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015103 exon18 c.G3506A p.R1169H . . . TMCC1 23023 broad.mit.edu 36 3 130872795 130872795 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017395 exon4 c.C579A p.I193I . . . COL6A5 256076 broad.mit.edu 36 3 131670503 131670503 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_153264 exon38 c.A6965G p.H2322R . . . COL6A5 256076 broad.mit.edu 36 3 131670768 131670768 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153264 exon38 c.C7230A p.I2410I . . . COL6A5 256076 broad.mit.edu 36 3 131672408 131672408 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153264 exon39 c.C7481T p.A2494V . . . COL6A6 131873 broad.mit.edu 36 3 131765023 131765023 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon2 c.C486A p.I162I . . . COL6A6 131873 broad.mit.edu 36 3 131766783 131766783 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon3 c.C917A p.A306D . . . COL6A6 131873 broad.mit.edu 36 3 131768553 131768553 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon4 c.G1600A p.G534R . . . COL6A6 131873 broad.mit.edu 36 3 131769738 131769738 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon5 c.C2001T p.S667S . . . COL6A6 131873 broad.mit.edu 36 3 131775731 131775731 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon7 c.C3219A p.I1073I . . . COL6A6 131873 broad.mit.edu 36 3 131776053 131776053 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon7 c.G3541T p.E1181X . . . COL6A6 131873 broad.mit.edu 36 3 131844375 131844375 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon29 c.G5164T p.G1722X . . . COL6A6 131873 broad.mit.edu 36 3 131850730 131850730 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon32 c.C5367T p.V1789V . . . COL6A6 131873 broad.mit.edu 36 3 131850836 131850836 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102608 exon32 c.C5473A p.L1825I . . . ATP2C1 27032 broad.mit.edu 36 3 132197587 132197587 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199183 exon22 c.G2020A p.E674K . . . ASTE1 28990 broad.mit.edu 36 3 132215793 132215793 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014065 exon6 c.C1838T p.S613L . . . ASTE1 28990 broad.mit.edu 36 3 132225988 132225988 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014065 exon3 c.C853T p.R285X . . . ASTE1 28990 broad.mit.edu 36 3 132226368 132226368 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014065 exon3 c.C473A p.S158X . . . NEK11 79858 broad.mit.edu 36 3 132231250 132231250 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024800 exon3 c.A8C p.K3T . . . CPNE4 131034 broad.mit.edu 36 3 133106956 133106956 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130808 exon2 c.T22C p.Y8H . . . ACPP 55 broad.mit.edu 36 3 133533735 133533735 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099 exon4 c.C313T p.R105X . . . ACPP 55 broad.mit.edu 36 3 133569336 133569336 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001134194 exon11 c.G1237T p.E413X . . . DNAJC13 23317 broad.mit.edu 36 3 133674706 133674706 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015268 exon21 c.C2236T p.R746X . . . CCRL1 51554 broad.mit.edu 36 3 133802425 133802425 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178445 exon1 c.C494T p.A165V . . . CCRL1 51554 broad.mit.edu 36 3 133802944 133802944 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178445 exon1 c.C1013A p.S338Y . . . ACAD11 84129 broad.mit.edu 36 3 133829882 133829882 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032169 exon8 c.C1062A p.L354L . . . ACAD11 84129 broad.mit.edu 36 3 133846375 133846375 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032169 exon2 c.C205T p.L69F . . . TOPBP1 11073 broad.mit.edu 36 3 134845689 134845689 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007027 exon11 c.C1713T p.I571I . . . TOPBP1 11073 broad.mit.edu 36 3 134851405 134851405 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007027 exon9 c.C1162T p.R388C . . . TF 7018 broad.mit.edu 36 3 134955139 134955139 + Missense_Mutation SNP C T T rs41298977 by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001063 exon3 c.C227T p.A76V . . . TF 7018 broad.mit.edu 36 3 134958366 134958366 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001063 exon7 c.G693T p.E231D . . . RYK 6259 broad.mit.edu 36 3 135360804 135360804 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002958 exon14 c.G1677A p.P559P . . . RYK 6259 broad.mit.edu 36 3 135377524 135377524 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002958 exon12 c.G1353T p.W451C . . . EPHB1 2047 broad.mit.edu 36 3 136153444 136153444 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004441 exon3 c.G665A p.R222Q . . . EPHB1 2047 broad.mit.edu 36 3 136403102 136403102 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004441 exon12 c.C2227T p.R743W EPHB1,stomach,NS,Substitution - Missense,-1 . . PPP2R3A 5523 broad.mit.edu 36 3 137279954 137279954 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181897 exon6 c.C737T p.S246L . . . MSL2 55167 broad.mit.edu 36 3 137353623 137353623 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018133 exon2 c.G790T p.D264Y . . . STAG1 10274 broad.mit.edu 36 3 137560744 137560744 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005862 exon27 c.C2872T p.R958C . . . STAG1 10274 broad.mit.edu 36 3 137600356 137600356 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005862 exon22 c.C2202T p.V734V . . . STAG1 10274 broad.mit.edu 36 3 137722862 137722862 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005862 exon7 c.C559T p.R187X . . . TMEM22 80723 broad.mit.edu 36 3 138056980 138056980 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001097599 exon2 c.G988A p.A330T . . . NCK1 4690 broad.mit.edu 36 3 138147419 138147419 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190796 exon2 c.G339T p.E113D . . . DZIP1L 199221 broad.mit.edu 36 3 139293971 139293971 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170538 exon6 c.A814C p.K272Q . . . ARMC8 25852 broad.mit.edu 36 3 139465701 139465701 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015396 exon15 c.G1214A p.R405Q . . . TXNDC6 347736 broad.mit.edu 36 3 139505134 139505134 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178130 exon11 c.T650C p.V217A . . . CEP70 80321 broad.mit.edu 36 3 139734071 139734071 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024491 exon8 c.A667G p.K223E . . . PIK3CB 5291 broad.mit.edu 36 3 139886309 139886309 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006219 exon15 c.T2163G p.T721T . . . CNTN6 27255 broad.mit.edu 36 3 1399809 1399809 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014461 exon18 c.G2350T p.E784X . . . COPB2 9276 broad.mit.edu 36 3 140573291 140573291 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004766 exon10 c.C1169T p.S390F . . . CLSTN2 64084 broad.mit.edu 36 3 141668212 141668212 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022131 exon8 c.C1293T p.F431F . . . CLSTN2 64084 broad.mit.edu 36 3 141758157 141758157 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022131 exon11 c.C1787T p.A596V . . . XPC 7508 broad.mit.edu 36 3 14187033 14187033 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001145769 exon3 c.G321T p.K107N . . . TRIM42 287015 broad.mit.edu 36 3 141889476 141889476 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152616 exon3 c.A1262T p.N421I . . . LSM3 27258 broad.mit.edu 36 3 14198160 14198160 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014463 exon2 c.C118T p.R40X . . . ACPL2 92370 broad.mit.edu 36 3 142494450 142494450 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152282 exon8 c.C1156A p.L386I . . . RASA2 5922 broad.mit.edu 36 3 142778576 142778576 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006506 exon15 c.C1528A p.L510I . . . GRK7 131890 broad.mit.edu 36 3 142980015 142980015 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139209 exon1 c.C199T p.R67C . . . ATR 545 broad.mit.edu 36 3 143698626 143698626 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184 exon33 c.G5657A p.R1886Q . . . ATR 545 broad.mit.edu 36 3 143701223 143701223 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184 exon31 c.G5316A p.T1772T . . . ATR 545 broad.mit.edu 36 3 143725539 143725539 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184 exon22 c.G4138T p.D1380Y . . . ATR 545 broad.mit.edu 36 3 143751109 143751109 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184 exon15 c.C3073T p.R1025C . . . TRPC1 7220 broad.mit.edu 36 3 144003752 144003752 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003304 exon9 c.C1531A p.L511I . . . PCOLCE2 26577 broad.mit.edu 36 3 144031239 144031239 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013363 exon6 c.T850G p.F284V . . . PCOLCE2 26577 broad.mit.edu 36 3 144089287 144089287 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013363 exon2 c.A106C p.I36L . . . PAQR9 344838 broad.mit.edu 36 3 144164052 144164052 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198504 exon1 c.C817T p.L273F . . . PAQR9 344838 broad.mit.edu 36 3 144164286 144164286 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198504 exon1 c.C583T p.R195C . . . SR140 23350 broad.mit.edu 36 3 144224593 144224593 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080415 exon12 c.G1227A p.E409E . . . SLC9A9 285195 broad.mit.edu 36 3 144696887 144696887 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173653 exon10 c.C1183A p.L395I . . . SLC9A9 285195 broad.mit.edu 36 3 145033666 145033666 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173653 exon2 c.T263C p.F88S . . . C3orf58 205428 broad.mit.edu 36 3 145187156 145187156 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173552 exon2 c.G739T p.E247X . . . C3orf58 205428 broad.mit.edu 36 3 145187288 145187288 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173552 exon2 c.G871T p.D291Y . . . C3orf58 205428 broad.mit.edu 36 3 145191242 145191242 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173552 exon3 c.G1162T p.E388X . . . C3orf20 84077 broad.mit.edu 36 3 14699422 14699422 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032137 exon3 c.C198A p.I66I . . . C3orf20 84077 broad.mit.edu 36 3 14706592 14706592 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184958 exon5 c.C344A p.S115Y . . . C3orf20 84077 broad.mit.edu 36 3 14720920 14720920 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184958 exon7 c.G585T p.K195N . . . PLOD2 5352 broad.mit.edu 36 3 147273079 147273079 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000935 exon16 c.G1744T p.E582X . . . PLSCR4 57088 broad.mit.edu 36 3 147400350 147400350 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020353 exon6 c.A564C p.T188T . . . PLSCR4 57088 broad.mit.edu 36 3 147400442 147400442 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020353 exon6 c.G472A p.E158K . . . FGD5 152273 broad.mit.edu 36 3 14837562 14837562 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152536 exon1 c.G1980A p.T660T . . . ZIC4 84107 broad.mit.edu 36 3 148591412 148591412 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001168378 exon4 c.G1150A p.E384K . . . ZIC1 7545 broad.mit.edu 36 3 148611146 148611146 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003412 exon1 c.C557T p.S186L . . . ZIC1 7545 broad.mit.edu 36 3 148611189 148611189 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003412 exon1 c.G600T p.M200I . . . AGTR1 185 broad.mit.edu 36 3 149941927 149941927 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032049 exon3 c.C415T p.R139X . . . AGTR1 185 broad.mit.edu 36 3 149942296 149942296 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032049 exon3 c.C784A p.L262M . . . CPA3 1359 broad.mit.edu 36 3 150069453 150069453 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001870 exon3 c.G206A p.R69Q . . . HLTF 6596 broad.mit.edu 36 3 150240158 150240158 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139048 exon22 c.A2515C p.M839L . . . HLTF 6596 broad.mit.edu 36 3 150250831 150250831 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139048 exon15 c.A1495C p.K499Q . . . HLTF 6596 broad.mit.edu 36 3 150272125 150272125 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139048 exon6 c.G637A p.E213K . . . HPS3 84343 broad.mit.edu 36 3 150355586 150355586 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032383 exon8 c.C1403T p.S468L . . . CP 1356 broad.mit.edu 36 3 150378910 150378910 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000096 exon16 c.G2860A p.E954K . . . CP 1356 broad.mit.edu 36 3 150387078 150387078 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000096 exon11 c.C1996A p.L666M . . . ZFYVE20 64145 broad.mit.edu 36 3 15091047 15091047 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022340 exon14 c.G1601T p.R534M . . . ZFYVE20 64145 broad.mit.edu 36 3 15093607 15093607 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022340 exon12 c.G1067T p.R356I . . . TSC22D2 9819 broad.mit.edu 36 3 151658935 151658935 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014779 exon4 c.G2165T p.R722I . . . EIF2A 83939 broad.mit.edu 36 3 151768391 151768391 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032025 exon8 c.G562T p.V188F . . . FAM194A 131831 broad.mit.edu 36 3 151867476 151867476 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152394 exon13 c.T1516G p.L506V . . . CAPN7 23473 broad.mit.edu 36 3 15228700 15228700 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014296 exon2 c.G188T p.R63I . . . MED12L 116931 broad.mit.edu 36 3 152356653 152356653 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053002 exon5 c.C572A p.S191Y . . . MED12L 116931 broad.mit.edu 36 3 152394082 152394082 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053002 exon14 c.T2084G p.F695C . . . GPR171 29909 broad.mit.edu 36 3 152399354 152399354 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013308 exon3 c.G510T p.K170N . . . P2RY14 9934 broad.mit.edu 36 3 152413848 152413848 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014879 exon3 c.C947T p.A316V . . . MED12L 116931 broad.mit.edu 36 3 152577563 152577563 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053002 exon28 c.C4118A p.S1373Y . . . MED12L 116931 broad.mit.edu 36 3 152588299 152588299 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053002 exon35 c.C4995A p.V1665V . . . MED12L 116931 broad.mit.edu 36 3 152613751 152613751 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053002 exon40 c.G6170A p.R2057Q . . . IGSF10 285313 broad.mit.edu 36 3 152638296 152638296 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178145 exon2 c.A824C p.K275T . . . IGSF10 285313 broad.mit.edu 36 3 152644018 152644018 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178822 exon5 c.G5407A p.G1803R . . . IGSF10 285313 broad.mit.edu 36 3 152647843 152647843 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178822 exon4 c.G2616T p.K872N . . . AADACL2 344752 broad.mit.edu 36 3 152944590 152944590 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207365 exon3 c.C381A p.F127L . . . AADAC 13 broad.mit.edu 36 3 153028274 153028274 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001086 exon5 c.G824T p.S275I . . . P2RY1 5028 broad.mit.edu 36 3 154037098 154037098 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002563 exon1 c.G837T p.M279I . . . P2RY1 5028 broad.mit.edu 36 3 154037285 154037285 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002563 exon1 c.G1024T p.A342S . . . METTL6 131965 broad.mit.edu 36 3 15427886 15427886 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152396 exon6 c.C736T p.R246X . . . RAP2B 5912 broad.mit.edu 36 3 154363262 154363262 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002886 exon1 c.G90T p.E30D . . . METTL6 131965 broad.mit.edu 36 3 15442855 15442855 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152396 exon2 c.C168A p.F56L . . . ARHGEF26 26084 broad.mit.edu 36 3 155440884 155440884 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015595 exon12 c.G2126T p.R709I . . . ARHGEF26 26084 broad.mit.edu 36 3 155455846 155455846 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015595 exon15 c.G2510T p.R837I . . . DHX36 170506 broad.mit.edu 36 3 155485449 155485449 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114397 exon18 c.G2011T p.E671X . . . DHX36 170506 broad.mit.edu 36 3 155494285 155494285 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001114397 exon14 c.G1574T p.R525I . . . GPR149 344758 broad.mit.edu 36 3 155538317 155538317 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001038705 exon4 c.C2061A p.I687I . . . GPR149 344758 broad.mit.edu 36 3 155629285 155629285 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001038705 exon1 c.G814A p.D272N . . . GPR149 344758 broad.mit.edu 36 3 155629443 155629443 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001038705 exon1 c.C656T p.S219L . . . HACL1 26061 broad.mit.edu 36 3 15577377 15577377 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012260 exon17 c.A1736G p.X579X . . . MME 4311 broad.mit.edu 36 3 156340696 156340696 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000902 exon10 c.G878A p.R293Q . . . MME 4311 broad.mit.edu 36 3 156342724 156342724 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000902 exon12 c.C1099A p.L367I . . . MME 4311 broad.mit.edu 36 3 156344844 156344844 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000902 exon14 c.C1320T p.V440V . . . PLCH1 23007 broad.mit.edu 36 3 156754659 156754659 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130960 exon8 c.G1054A p.D352N . . . PLCH1 23007 broad.mit.edu 36 3 156765542 156765542 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130960 exon7 c.G889T p.V297L . . . C3orf33 285315 broad.mit.edu 36 3 156964306 156964306 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173657 exon6 c.C450A p.I150I . . . C3orf33 285315 broad.mit.edu 36 3 156976252 156976252 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173657 exon4 c.G125A p.R42Q . . . SLC33A1 9197 broad.mit.edu 36 3 157028718 157028718 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004733 exon6 c.C1625T p.S542L . . . KCNAB1 7881 broad.mit.edu 36 3 157343783 157343783 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003471 exon1 c.C122T p.A41V . . . TIPARP 25976 broad.mit.edu 36 3 157878778 157878778 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015508 exon2 c.C598A p.L200M . . . TIPARP 25976 broad.mit.edu 36 3 157878906 157878906 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015508 exon2 c.T726G p.I242M . . . TIPARP 25976 broad.mit.edu 36 3 157879048 157879048 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015508 exon2 c.G868A p.E290K . . . LEKR1 389170 broad.mit.edu 36 3 158193654 158193654 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004316 exon9 c.G1003T p.E335X . . . RSRC1 51319 broad.mit.edu 36 3 159403705 159403705 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016625 exon4 c.G471T p.K157N . . . GFM1 85476 broad.mit.edu 36 3 159861446 159861446 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024996 exon10 c.C1311T p.S437S . . . MFSD1 64747 broad.mit.edu 36 3 160014512 160014512 + Missense_Mutation SNP C A A rs9867246 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022736 exon7 c.C761A p.S254Y . . . IL12A 3592 broad.mit.edu 36 3 161194235 161194235 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000882 exon6 c.C516A p.F172L . . . IFT80 57560 broad.mit.edu 36 3 161477849 161477849 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190242 exon17 c.C1627T p.L543F . . . IFT80 57560 broad.mit.edu 36 3 161479695 161479695 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190242 exon15 c.A1405C p.R469R . . . IFT80 57560 broad.mit.edu 36 3 161504446 161504446 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190242 exon10 c.A691C p.I231L . . . SMC4 10051 broad.mit.edu 36 3 161603246 161603246 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002800 exon4 c.A407T p.K136I . . . SMC4 10051 broad.mit.edu 36 3 161604939 161604939 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001002800 exon5 c.C640T p.R214X . . . SMC4 10051 broad.mit.edu 36 3 161631540 161631540 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001002800 exon20 c.A2967G p.E989E . . . TRIM59 286827 broad.mit.edu 36 3 161639017 161639017 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173084 exon3 c.G649A p.E217K . . . KPNA4 3840 broad.mit.edu 36 3 161737306 161737306 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002268 exon2 c.G86A p.R29Q . . . B3GALNT1 8706 broad.mit.edu 36 3 162286803 162286803 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033168 exon4 c.G434A p.R145Q . . . GALNTL2 117248 broad.mit.edu 36 3 16235957 16235957 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054110 exon7 c.G1436T p.R479I . . . NMD3 51068 broad.mit.edu 36 3 162425520 162425520 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015938 exon3 c.G153A p.S51S . . . OTOL1 131149 broad.mit.edu 36 3 162697653 162697653 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080440 exon1 c.G364T p.G122C . . . RFTN1 23180 broad.mit.edu 36 3 16333561 16333561 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015150 exon10 c.C1515T p.S505S . . . RFTN1 23180 broad.mit.edu 36 3 16450394 16450394 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015150 exon3 c.C300A p.I100I . . . SI 6476 broad.mit.edu 36 3 166216450 166216450 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001041 exon32 c.G3872T p.R1291I . . . SI 6476 broad.mit.edu 36 3 166233165 166233165 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001041 exon24 c.G2575T p.D859Y . . . SI 6476 broad.mit.edu 36 3 166249685 166249685 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001041 exon15 c.G1639A p.D547N . . . SLITRK3 22865 broad.mit.edu 36 3 166391053 166391053 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014926 exon2 c.A260G p.N87S . . . SLITRK3 22865 broad.mit.edu 36 3 166391258 166391258 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014926 exon2 c.C55A p.L19I . . . BCHE 590 broad.mit.edu 36 3 167031103 167031103 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000055 exon2 c.T413G p.L138W . . . SERPINI2 5276 broad.mit.edu 36 3 168667540 168667540 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006217 exon3 c.G475T p.D159Y . . . SERPINI1 5274 broad.mit.edu 36 3 168990933 168990933 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122752 exon3 c.T330G p.N110K . . . GOLIM4 27333 broad.mit.edu 36 3 169247452 169247452 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014498 exon3 c.G292A p.E98K . . . PLCL2 23228 broad.mit.edu 36 3 17027234 17027234 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144382 exon3 c.A1373C p.K458T . . . MECOM 2122 broad.mit.edu 36 3 170295672 170295672 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105077 exon13 c.C2536T p.R846C . . . ARPM1 84517 broad.mit.edu 36 3 170968675 170968675 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032487 exon2 c.G358T p.E120X . . . MYNN 55892 broad.mit.edu 36 3 170979464 170979464 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018657 exon3 c.G481T p.D161Y . . . LRRC34 151827 broad.mit.edu 36 3 170997274 170997274 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172779 exon8 c.T861C p.C287C . . . LRRIQ4 344657 broad.mit.edu 36 3 171033480 171033480 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001080460 exon4 c.T1345G p.L449V . . . LRRIQ4 344657 broad.mit.edu 36 3 171038035 171038035 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080460 exon5 c.G1605A p.K535K . . . LRRC31 79782 broad.mit.edu 36 3 171040550 171040550 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024727 exon9 c.C1573A p.L525I . . . LRRC31 79782 broad.mit.edu 36 3 171052214 171052214 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024727 exon7 c.A1046G p.K349R . . . LRRC31 79782 broad.mit.edu 36 3 171057303 171057303 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024727 exon4 c.A539T p.N180I . . . LRRC31 79782 broad.mit.edu 36 3 171070222 171070222 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024727 exon1 c.A68C p.K23T . . . GPR160 26996 broad.mit.edu 36 3 171284455 171284455 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014373 exon4 c.A1G p.M1V . . . GPR160 26996 broad.mit.edu 36 3 171285199 171285199 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014373 exon4 c.C745A p.L249I . . . PHC3 80012 broad.mit.edu 36 3 171307355 171307355 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024947 exon12 c.T2427G p.F809L . . . SKIL 6498 broad.mit.edu 36 3 171590833 171590833 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005414 exon5 c.G1558T p.D520Y . . . SLC7A14 57709 broad.mit.edu 36 3 171681189 171681189 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020949 exon7 c.G1576A p.E526K . . . SLC7A14 57709 broad.mit.edu 36 3 171686798 171686798 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020949 exon5 c.C813T p.I271I . . . SLC7A14 57709 broad.mit.edu 36 3 171727408 171727408 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020949 exon2 c.C12A p.F4L . . . TNIK 23043 broad.mit.edu 36 3 172264434 172264434 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001161565 exon31 c.C3761T p.S1254F . . . TNIK 23043 broad.mit.edu 36 3 172269479 172269479 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001161565 exon28 c.C3299A p.S1100Y . . . TNIK 23043 broad.mit.edu 36 3 172311200 172311200 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001161565 exon17 c.C2029T p.R677X . . . TNIK 23043 broad.mit.edu 36 3 172367584 172367584 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001161565 exon10 c.G943T p.E315X . . . TBC1D5 9779 broad.mit.edu 36 3 17254693 17254693 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134380 exon17 c.G1554T p.M518I . . . PLD1 5337 broad.mit.edu 36 3 172803608 172803608 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130081 exon26 c.C3065A p.S1022Y . . . PLD1 5337 broad.mit.edu 36 3 172892878 172892878 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130081 exon13 c.G1276A p.A426T . . . PLD1 5337 broad.mit.edu 36 3 172935399 172935399 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130081 exon5 c.C490T p.P164S . . . FNDC3B 64778 broad.mit.edu 36 3 173452005 173452005 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135095 exon6 c.C770T p.S257L . . . FNDC3B 64778 broad.mit.edu 36 3 173495851 173495851 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135095 exon8 c.C854A p.S285Y . . . FNDC3B 64778 broad.mit.edu 36 3 173495945 173495945 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135095 exon8 c.C948T p.Y316Y . . . FNDC3B 64778 broad.mit.edu 36 3 173546887 173546887 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135095 exon20 c.C2327A p.S776Y . . . GHSR 2693 broad.mit.edu 36 3 173648748 173648748 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198407 exon1 c.C150T p.C50C . . . ECT2 1894 broad.mit.edu 36 3 174017221 174017221 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018098 exon22 c.G2462A p.R821Q . . . NLGN1 22871 broad.mit.edu 36 3 174805533 174805533 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014932 exon3 c.G451A p.E151K . . . NLGN1 22871 broad.mit.edu 36 3 175475893 175475893 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014932 exon5 c.C741A p.F247L . . . NAALADL2 254827 broad.mit.edu 36 3 176297693 176297693 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207015 exon2 c.C463T p.P155S . . . NAALADL2 254827 broad.mit.edu 36 3 177003667 177003667 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207015 exon14 c.C2370A p.V790V . . . ZMAT3 64393 broad.mit.edu 36 3 180225517 180225517 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152240 exon7 c.G849T p.E283D . . . MFN1 55669 broad.mit.edu 36 3 180552408 180552408 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033540 exon3 c.C139T p.R47X . . . MFN1 55669 broad.mit.edu 36 3 180579072 180579072 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033540 exon14 c.T1438G p.L480V . . . MFN1 55669 broad.mit.edu 36 3 180586123 180586123 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033540 exon15 c.G1735T p.E579X . . . ACTL6A 86 broad.mit.edu 36 3 180787034 180787034 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178042 exon13 c.C1003T p.R335W . . . ACTL6A 86 broad.mit.edu 36 3 180788451 180788451 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178042 exon14 c.G1123T p.E375X . . . MRPL47 57129 broad.mit.edu 36 3 180789407 180789407 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177988 exon6 c.C370A p.L124I . . . USP13 8975 broad.mit.edu 36 3 180882436 180882436 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003940 exon2 c.G245A p.R82Q . . . USP13 8975 broad.mit.edu 36 3 180909277 180909277 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003940 exon6 c.G643A p.D215N . . . USP13 8975 broad.mit.edu 36 3 180966252 180966252 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003940 exon19 c.G2335T p.E779X . . . PEX5L 51555 broad.mit.edu 36 3 181008271 181008271 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016559 exon14 c.G1561A p.G521R . . . TTC14 151613 broad.mit.edu 36 3 181803729 181803729 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133462 exon3 c.G410A p.R137Q . . . TTC14 151613 broad.mit.edu 36 3 181803797 181803797 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133462 exon3 c.G478T p.E160X . . . CCDC39 339829 broad.mit.edu 36 3 181819815 181819815 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_181426 exon16 c.G2191T p.E731X . . . ATP11B 23200 broad.mit.edu 36 3 184036584 184036584 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014616 exon5 c.G383A p.R128Q . . . ATP11B 23200 broad.mit.edu 36 3 184067889 184067889 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014616 exon15 c.G1651T p.E551X . . . SATB1 6304 broad.mit.edu 36 3 18413684 18413684 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002971 exon6 c.G742T p.D248Y . . . DCUN1D1 54165 broad.mit.edu 36 3 184166202 184166202 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020640 exon2 c.C37T p.R13C . . . MCCC1 56922 broad.mit.edu 36 3 184242169 184242169 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020166 exon11 c.G1147A p.E383K . . . LAMP3 27074 broad.mit.edu 36 3 184354405 184354405 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014398 exon2 c.C518T p.S173L . . . MCF2L2 23101 broad.mit.edu 36 3 184406632 184406632 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015078 exon24 c.G2777A p.R926Q . . . MCF2L2 23101 broad.mit.edu 36 3 184416565 184416565 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015078 exon22 c.G2382T p.K794N . . . MCF2L2 23101 broad.mit.edu 36 3 184539308 184539308 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015078 exon5 c.C460A p.R154R . . . YEATS2 55689 broad.mit.edu 36 3 184922420 184922420 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018023 exon5 c.G339T p.K113N . . . PARL 55486 broad.mit.edu 36 3 185067121 185067121 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037639 exon3 c.G448T p.D150Y . . . ABCC5 10057 broad.mit.edu 36 3 185188341 185188341 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001023587 exon5 c.C502T p.R168X . . . DVL3 1857 broad.mit.edu 36 3 185365381 185365381 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004423 exon5 c.C567A p.F189L . . . ECE2 9718 broad.mit.edu 36 3 185458123 185458123 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014693 exon2 c.C365T p.A122V . . . PSMD2 5708 broad.mit.edu 36 3 185502108 185502108 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002808 exon4 c.G447T p.E149D . . . EIF4G1 1981 broad.mit.edu 36 3 185517937 185517937 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182917 exon4 c.C282A p.I94I . . . EIF4G1 1981 broad.mit.edu 36 3 185522269 185522269 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182917 exon9 c.G1203T p.E401D . . . THPO 7066 broad.mit.edu 36 3 185573016 185573016 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177597 exon6 c.G1029T p.Q343H . . . VPS8 23355 broad.mit.edu 36 3 186040217 186040217 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009921 exon7 c.G518T p.G173V . . . C3orf70 285382 broad.mit.edu 36 3 186283503 186283503 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025266 exon2 c.G739T p.E247X . . . C3orf70 285382 broad.mit.edu 36 3 186283678 186283678 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025266 exon2 c.G564T p.E188D . . . LIPH 200879 broad.mit.edu 36 3 186712039 186712039 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139248 exon9 c.G1235A p.R412Q . . . SENP2 59343 broad.mit.edu 36 3 186815146 186815146 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021627 exon11 c.T1034A p.I345K . . . TRA2B 6434 broad.mit.edu 36 3 187126085 187126085 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004593 exon3 c.G194A p.R65Q . . . DGKG 1608 broad.mit.edu 36 3 187498584 187498584 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080744 exon4 c.G273A p.P91P . . . CRYGS 1427 broad.mit.edu 36 3 187739906 187739906 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017541 exon2 c.G196T p.E66X . . . TBCCD1 55171 broad.mit.edu 36 3 187764584 187764584 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134415 exon2 c.G229A p.E77K . . . FETUB 26998 broad.mit.edu 36 3 187845352 187845352 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014375 exon4 c.G543T p.E181D . . . HRG 3273 broad.mit.edu 36 3 187877699 187877699 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000412 exon7 c.G911T p.R304I . . . KNG1 3827 broad.mit.edu 36 3 187942776 187942776 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001102416 exon10 c.G1897T p.E633X . . . RTP1 132112 broad.mit.edu 36 3 188398127 188398127 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153708 exon1 c.G130T p.D44Y . . . MASP1 5648 broad.mit.edu 36 3 188425950 188425950 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001879 exon13 c.C1597A p.L533I . . . RTP4 64108 broad.mit.edu 36 3 188571432 188571432 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022147 exon2 c.C318A p.F106L . . . BCL6 604 broad.mit.edu 36 3 188929882 188929882 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130845 exon5 c.G1005T p.Q335H . . . LPP 4026 broad.mit.edu 36 3 190066740 190066740 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167671 exon9 c.C1469T p.A490V . . . TP63 8626 broad.mit.edu 36 3 190938302 190938302 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114979 exon2 c.G142T p.E48X . . . TP63 8626 broad.mit.edu 36 3 191067227 191067227 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114980 exon4 c.G547T p.E183X . . . LEPREL1 55214 broad.mit.edu 36 3 191195913 191195914 + Missense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_018192 exon2 c.492_493TA . . . . IL1RAP 3556 broad.mit.edu 36 3 191846229 191846229 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001167929 exon10 c.G1249T p.E417X . . . OSTN 344901 broad.mit.edu 36 3 192450546 192450546 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198184 exon3 c.G344A p.R115Q . . . CCDC50 152137 broad.mit.edu 36 3 192558500 192558500 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_174908 exon3 c.G132A p.S44S . . . CCDC50 152137 broad.mit.edu 36 3 192581321 192581321 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174908 exon8 c.G620A p.R207Q . . . FGF12 2257 broad.mit.edu 36 3 193344588 193344588 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004113 exon6 c.G450A p.S150S . . . ATP13A5 344905 broad.mit.edu 36 3 194545492 194545492 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198505 exon8 c.G808T p.D270Y . . . KCNH8 131096 broad.mit.edu 36 3 19473421 19473421 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144633 exon11 c.C1983T p.F661F . . . KCNH8 131096 broad.mit.edu 36 3 19550278 19550278 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144633 exon16 c.G3007T p.E1003X . . . ATP13A3 79572 broad.mit.edu 36 3 195661862 195661862 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024524 exon4 c.C353T p.P118L . . . ACAP2 23527 broad.mit.edu 36 3 196510848 196510848 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_012287 exon11 c.T865C p.F289L . . . ACAP2 23527 broad.mit.edu 36 3 196538985 196538985 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012287 exon7 c.C538A p.L180I . . . PPP1R2 5504 broad.mit.edu 36 3 196727182 196727182 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006241 exon5 c.C493A p.L165I . . . APOD 347 broad.mit.edu 36 3 196777262 196777262 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001647 exon5 c.C368T p.T123I . . . MUC4 4585 broad.mit.edu 36 3 196959838 196959838 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138297 exon23 c.C3258A p.F1086L . . . MUC4 4585 broad.mit.edu 36 3 196971751 196971751 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138297 exon15 c.G2040A p.G680G . . . MUC4 4585 broad.mit.edu 36 3 196979278 196979278 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138297 exon6 c.C684T p.F228F . . . MUC4 4585 broad.mit.edu 36 3 197001216 197001216 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018406 exon2 c.G1630T p.E544X . . . OSTalpha 200931 broad.mit.edu 36 3 197444397 197444397 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152672 exon9 c.G953A p.R318Q . . . TM4SF19 116211 broad.mit.edu 36 3 197535575 197535575 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138461 exon4 c.G413A p.W138X . . . TM4SF19 116211 broad.mit.edu 36 3 197538266 197538266 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138461 exon3 c.G236T p.G79V . . . UBXN7 26043 broad.mit.edu 36 3 197618644 197618644 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015562 exon2 c.G91T p.G31X . . . WDR53 348793 broad.mit.edu 36 3 197772458 197772458 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182627 exon3 c.G286T p.E96X . . . FBXO45 200933 broad.mit.edu 36 3 197795442 197795442 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001105573 exon3 c.G717T p.K239N . . . LRRC33 375387 broad.mit.edu 36 3 197872844 197872844 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198565 exon3 c.C1933T p.R645W . . . C3orf34 84984 broad.mit.edu 36 3 197918905 197918905 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032898 exon3 c.T418A p.F140I . . . PIGX 54965 broad.mit.edu 36 3 197933741 197933741 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017861 exon3 c.C235A p.L79I . . . PIGX 54965 broad.mit.edu 36 3 197939361 197939361 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017861 exon4 c.G489A p.S163S . . . PIGX 54965 broad.mit.edu 36 3 197942305 197942305 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017861 exon5 c.C578A p.P193H . . . PAK2 5062 broad.mit.edu 36 3 197993930 197993930 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002577 exon2 c.G16T p.E6X . . . SENP5 205564 broad.mit.edu 36 3 198096804 198096804 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152699 exon2 c.C355A p.L119M . . . SENP5 205564 broad.mit.edu 36 3 198111016 198111016 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152699 exon3 c.C1596A p.V532V . . . KIAA0226 9711 broad.mit.edu 36 3 198911913 198911913 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014687 exon7 c.C1229T p.S410L . . . LRCH3 84859 broad.mit.edu 36 3 199026197 199026197 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032773 exon2 c.C284A p.S95X . . . LMLN 89782 broad.mit.edu 36 3 199186328 199186328 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033029 exon3 c.G336T p.K112N . . . LMLN 89782 broad.mit.edu 36 3 199207453 199207453 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033029 exon10 c.G1058A p.R353Q . . . KAT2B 8850 broad.mit.edu 36 3 20162851 20162851 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003884 exon14 c.C2044T p.R682X . . . KAT2B 8850 broad.mit.edu 36 3 20164939 20164939 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003884 exon17 c.G2261T p.R754I . . . SGOL1 151648 broad.mit.edu 36 3 20190785 20190785 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012409 exon6 c.A1242C p.E414D . . . ZNF385D 79750 broad.mit.edu 36 3 21453519 21453519 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024697 exon5 c.C620T p.S207L . . . ZNF385D 79750 broad.mit.edu 36 3 21453643 21453643 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024697 exon5 c.A496T p.S166C . . . NKIRAS1 28512 broad.mit.edu 36 3 23909596 23909596 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020345 exon5 c.G573T p.E191D . . . NR1D2 9975 broad.mit.edu 36 3 23976305 23976305 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005126 exon4 c.G512T p.R171I . . . NR1D2 9975 broad.mit.edu 36 3 23978821 23978821 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005126 exon5 c.G867T p.K289N . . . TOP2B 7155 broad.mit.edu 36 3 25614887 25614887 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001068 exon36 c.G4781A p.R1594Q . . . TOP2B 7155 broad.mit.edu 36 3 25621336 25621336 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001068 exon33 c.G4393T p.D1465Y . . . TOP2B 7155 broad.mit.edu 36 3 25626073 25626073 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001068 exon29 c.G3906T p.K1302N . . . TOP2B 7155 broad.mit.edu 36 3 25645604 25645604 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001068 exon14 c.A1711C p.N571H . . . NGLY1 55768 broad.mit.edu 36 3 25750396 25750396 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145294 exon8 c.C1105T p.R369X . . . NEK10 152110 broad.mit.edu 36 3 27301184 27301184 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199347 exon23 c.C1927T p.R643X . . . NEK10 152110 broad.mit.edu 36 3 27318251 27318251 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199347 exon14 c.C1108A p.H370N . . . NEK10 152110 broad.mit.edu 36 3 27360845 27360845 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199347 exon6 c.G284T p.R95I . . . SLC4A7 9497 broad.mit.edu 36 3 27428236 27428236 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003615 exon12 c.G1640T p.R547I . . . SLC4A7 9497 broad.mit.edu 36 3 27435093 27435093 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003615 exon11 c.G1520T p.R507I . . . ZCWPW2 152098 broad.mit.edu 36 3 28429575 28429575 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001040432 exon2 c.A12C p.E4D . . . ZCWPW2 152098 broad.mit.edu 36 3 28532067 28532067 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040432 exon7 c.C735T p.C245C . . . RBMS3 27303 broad.mit.edu 36 3 29451324 29451324 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003793 exon2 c.C162T p.S54S . . . CNTN4 152330 broad.mit.edu 36 3 3055651 3055651 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175613 exon10 c.C1143T p.G381G . . . CNTN4 152330 broad.mit.edu 36 3 3059058 3059058 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175613 exon12 c.C1479A p.F493L . . . CNTN4 152330 broad.mit.edu 36 3 3072904 3072904 + Nonstop_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175613 exon16 c.A2097G p.X699W . . . IL5RA 3568 broad.mit.edu 36 3 3119448 3119448 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000564 exon5 c.C139A p.L47I . . . STT3B 201595 broad.mit.edu 36 3 31641429 31641429 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178862 exon12 c.G1747T p.D583Y . . . TRNT1 51095 broad.mit.edu 36 3 3164809 3164809 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182916 exon8 c.G1276T p.E426X . . . OSBPL10 114884 broad.mit.edu 36 3 31700529 31700529 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017784 exon8 c.C1327T p.L443L . . . CRBN 51185 broad.mit.edu 36 3 3190804 3190804 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173482 exon3 c.G313T p.E105X . . . GPD1L 23171 broad.mit.edu 36 3 32182375 32182375 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015141 exon8 c.C1025A p.S342Y . . . TRIM71 131405 broad.mit.edu 36 3 32908291 32908291 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039111 exon4 c.G2591A p.R864Q . . . UBP1 7342 broad.mit.edu 36 3 33413620 33413620 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128161 exon13 c.T1192G p.L398V . . . CLASP2 23122 broad.mit.edu 36 3 33515156 33515156 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015097 exon38 c.C4492T p.P1498S . . . CLASP2 23122 broad.mit.edu 36 3 33620691 33620691 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015097 exon17 c.C1709T p.S570F . . . CLASP2 23122 broad.mit.edu 36 3 33623236 33623236 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015097 exon16 c.A1545C p.R515S . . . PDCD6IP 10015 broad.mit.edu 36 3 33852670 33852670 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001162429 exon8 c.G980A p.R327Q . . . PDCD6IP 10015 broad.mit.edu 36 3 33860647 33860647 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001162429 exon11 c.G1414T p.D472Y . . . CHL1 10752 broad.mit.edu 36 3 358609 358609 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006614 exon7 c.G523A p.E175K . . . CHL1 10752 broad.mit.edu 36 3 361290 361290 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006614 exon9 c.G746T p.R249I . . . STAC 6769 broad.mit.edu 36 3 36459898 36459898 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003149 exon2 c.G150T p.K50N . . . STAC 6769 broad.mit.edu 36 3 36562689 36562689 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003149 exon11 c.C1113A p.I371I . . . TRANK1 9881 broad.mit.edu 36 3 36847798 36847798 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014831 exon21 c.A8148C p.K2716N . . . TRANK1 9881 broad.mit.edu 36 3 36849381 36849381 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014831 exon21 c.G6565A p.G2189R . . . TRANK1 9881 broad.mit.edu 36 3 36849782 36849782 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014831 exon21 c.A6164C p.K2055T . . . TRANK1 9881 broad.mit.edu 36 3 36850035 36850035 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014831 exon21 c.G5911T p.E1971X . . . TRANK1 9881 broad.mit.edu 36 3 36850275 36850275 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014831 exon21 c.G5671T p.D1891Y . . . TRANK1 9881 broad.mit.edu 36 3 36851279 36851279 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014831 exon20 c.G5509T p.E1837X . . . TRANK1 9881 broad.mit.edu 36 3 36859150 36859150 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014831 exon17 c.G5115T p.Q1705H . . . EPM2AIP1 9852 broad.mit.edu 36 3 37008003 37008003 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014805 exon1 c.G1570T p.D524Y . . . EPM2AIP1 9852 broad.mit.edu 36 3 37008215 37008215 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014805 exon1 c.A1358C p.K453T . . . MLH1 4292 broad.mit.edu 36 3 37031029 37031029 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000249 exon9 c.C780T p.L260L . . . MLH1 4292 broad.mit.edu 36 3 37058790 37058790 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000249 exon15 c.T1695G p.I565M . . . MLH1 4292 broad.mit.edu 36 3 37065087 37065087 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000249 exon17 c.C1972A p.L658I . . . LRRFIP2 9209 broad.mit.edu 36 3 37100151 37100151 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017724 exon7 c.G490T p.E164X . . . GOLGA4 2803 broad.mit.edu 36 3 37342054 37342054 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172713 exon15 c.G3739A p.E1247K . . . GOLGA4 2803 broad.mit.edu 36 3 37342989 37342989 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172713 exon15 c.G4674T p.Q1558H . . . GOLGA4 2803 broad.mit.edu 36 3 37343062 37343062 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172713 exon15 c.G4747T p.E1583X . . . GOLGA4 2803 broad.mit.edu 36 3 37343238 37343238 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172713 exon15 c.G4923T p.E1641D . . . GOLGA4 2803 broad.mit.edu 36 3 37343336 37343336 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172713 exon15 c.A5021C p.K1674T . . . GOLGA4 2803 broad.mit.edu 36 3 37344295 37344295 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001172713 exon15 c.G5980T p.D1994Y . . . C3orf35 339883 broad.mit.edu 36 3 37451602 37451602 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178339 exon6 c.G490T p.E164X . . . ITGA9 3680 broad.mit.edu 36 3 37766976 37766976 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002207 exon23 c.G2453T p.S818I . . . ITGA9 3680 broad.mit.edu 36 3 37801479 37801479 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002207 exon26 c.C2795T p.S932L . . . PLCD1 5333 broad.mit.edu 36 3 38024578 38024578 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006225 exon14 c.G2116T p.D706Y . . . DLEC1 9940 broad.mit.edu 36 3 38078779 38078779 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007337 exon4 c.C789T p.F263F . . . DLEC1 9940 broad.mit.edu 36 3 38100718 38100718 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007337 exon7 c.G1239A p.T413T . . . ACAA1 30 broad.mit.edu 36 3 38142348 38142348 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130410 exon8 c.C747T p.F249F . . . MYD88 4615 broad.mit.edu 36 3 38157660 38157660 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001172568 exon4 c.A674G p.Y225C . . . SLC22A13 9390 broad.mit.edu 36 3 38292849 38292849 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004256 exon8 c.C1305A p.I435I . . . SLC22A14 9389 broad.mit.edu 36 3 38323016 38323016 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004803 exon1 c.G495T p.K165N . . . EXOG 9941 broad.mit.edu 36 3 38512911 38512911 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145464 exon1 c.C49A p.L17M . . . LRRN1 57633 broad.mit.edu 36 3 3862235 3862235 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020873 exon2 c.G910A p.D304N . . . SCN5A 6331 broad.mit.edu 36 3 38649678 38649678 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099405 exon2 c.G125T p.S42I . . . SCN10A 6336 broad.mit.edu 36 3 38714773 38714773 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006514 exon27 c.G4942A p.A1648T . . . SCN10A 6336 broad.mit.edu 36 3 38728921 38728921 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006514 exon22 c.T3824C p.V1275A . . . SCN10A 6336 broad.mit.edu 36 3 38743350 38743350 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006514 exon16 c.G2838A p.E946E . . . SCN10A 6336 broad.mit.edu 36 3 38743451 38743451 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006514 exon16 c.G2737A p.A913T . . . SCN10A 6336 broad.mit.edu 36 3 38766659 38766659 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006514 exon12 c.G1776T p.K592N . . . SCN10A 6336 broad.mit.edu 36 3 38768928 38768928 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006514 exon11 c.T1541G p.I514S . . . SCN10A 6336 broad.mit.edu 36 3 38768992 38768992 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006514 exon11 c.G1477A p.A493T . . . SCN10A 6336 broad.mit.edu 36 3 38777859 38777859 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006514 exon6 c.G711A p.G237G . . . SCN10A 6336 broad.mit.edu 36 3 38810246 38810246 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006514 exon1 c.G260A p.S87N . . . SCN11A 11280 broad.mit.edu 36 3 38863588 38863588 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014139 exon26 c.C4977T p.V1659V . . . SCN11A 11280 broad.mit.edu 36 3 38864022 38864022 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014139 exon26 c.G4543T p.G1515C . . . SCN11A 11280 broad.mit.edu 36 3 38867223 38867223 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014139 exon25 c.C4080T p.F1360F . . . SCN11A 11280 broad.mit.edu 36 3 38901868 38901868 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014139 exon17 c.A2979C p.E993D . . . SCN11A 11280 broad.mit.edu 36 3 38902676 38902676 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014139 exon16 c.G2893T p.E965X . . . SCN11A 11280 broad.mit.edu 36 3 38925673 38925673 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014139 exon9 c.G1118T p.G373V . . . SCN11A 11280 broad.mit.edu 36 3 38961940 38961940 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014139 exon3 c.A454G p.K152E . . . TTC21A 199223 broad.mit.edu 36 3 39152906 39152906 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001105513 exon22 c.T2876G p.L959R . . . XIRP1 165904 broad.mit.edu 36 3 39205657 39205657 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_194293 exon2 c.G284A p.R95H . . . CX3CR1 1524 broad.mit.edu 36 3 39282693 39282693 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001171174 exon2 c.C408A p.F136L . . . CHL1 10752 broad.mit.edu 36 3 400551 400551 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006614 exon19 c.A2229C p.E743D . . . ZNF621 285268 broad.mit.edu 36 3 40549081 40549081 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098414 exon5 c.C816T p.F272F . . . ULK4 54986 broad.mit.edu 36 3 41734325 41734325 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017886 exon23 c.A2354C p.K785T . . . ULK4 54986 broad.mit.edu 36 3 41929316 41929316 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017886 exon9 c.G883T p.D295Y . . . TRAK1 22906 broad.mit.edu 36 3 42217370 42217370 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042646 exon12 c.G1247T p.R416I . . . CHL1 10752 broad.mit.edu 36 3 422193 422193 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006614 exon28 c.G3474T p.K1158N . . . TRAK1 22906 broad.mit.edu 36 3 42226397 42226397 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042646 exon14 c.G1879A p.D627N . . . VIPR1 7433 broad.mit.edu 36 3 42548769 42548769 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004624 exon10 c.G950A p.R317Q . . . NKTR 4820 broad.mit.edu 36 3 42656075 42656075 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005385 exon13 c.G3875T p.R1292I . . . KBTBD5 131377 broad.mit.edu 36 3 42704764 42704764 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152393 exon2 c.C1279T p.R427C . . . CCDC13 152206 broad.mit.edu 36 3 42763761 42763761 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144719 exon6 c.G712A p.A238T . . . CCBP2 1238 broad.mit.edu 36 3 42881244 42881244 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001296 exon3 c.G246T p.E82D . . . ZNF662 389114 broad.mit.edu 36 3 42931259 42931259 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134656 exon4 c.T768C p.S256S . . . SETMAR 6419 broad.mit.edu 36 3 4330431 4330431 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006515 exon2 c.C1006T p.R336X . . . SNRK 54861 broad.mit.edu 36 3 43356808 43356808 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017719 exon5 c.G757T p.D253Y . . . ANO10 55129 broad.mit.edu 36 3 43571807 43571807 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018075 exon10 c.C1635T p.F545F . . . ZNF445 353274 broad.mit.edu 36 3 44464123 44464123 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181489 exon8 c.C2044A p.L682M . . . ZNF445 353274 broad.mit.edu 36 3 44464821 44464821 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181489 exon8 c.G1346T p.R449I . . . ZNF167 55888 broad.mit.edu 36 3 44584847 44584847 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025169 exon5 c.G729A p.K243K . . . ZNF167 55888 broad.mit.edu 36 3 44586920 44586920 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018651 exon6 c.C1314A p.P438P . . . ZNF167 55888 broad.mit.edu 36 3 44587654 44587654 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018651 exon6 c.G2048T p.R683I . . . ZNF167 55888 broad.mit.edu 36 3 44587836 44587836 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018651 exon6 c.G2230T p.E744X . . . ZNF660 285349 broad.mit.edu 36 3 44611565 44611565 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173658 exon3 c.C876T p.H292H . . . ZNF197 10168 broad.mit.edu 36 3 44648983 44648983 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024855 exon5 c.C657T p.F219F . . . ZNF197 10168 broad.mit.edu 36 3 44658655 44658655 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006991 exon6 c.G1029T p.K343N . . . ZNF502 91392 broad.mit.edu 36 3 44737974 44737974 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033210 exon4 c.C661T p.R221X . . . ZNF501 115560 broad.mit.edu 36 3 44751701 44751701 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145044 exon3 c.C784A p.L262I . . . KIAA1143 57456 broad.mit.edu 36 3 44770816 44770816 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020696 exon2 c.G157T p.E53X . . . KIF15 56992 broad.mit.edu 36 3 44816857 44816857 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020242 exon11 c.T1146G p.A382A . . . KIF15 56992 broad.mit.edu 36 3 44857666 44857666 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020242 exon29 c.T3517G p.L1173V . . . TGM4 7047 broad.mit.edu 36 3 44920386 44920386 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003241 exon9 c.C978A p.F326L . . . TGM4 7047 broad.mit.edu 36 3 44923521 44923521 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003241 exon10 c.C1152T p.F384F . . . EXOSC7 23016 broad.mit.edu 36 3 45005722 45005722 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015004 exon2 c.C144A p.S48S . . . LARS2 23395 broad.mit.edu 36 3 45416746 45416746 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015340 exon4 c.G240A p.S80S . . . SACM1L 22908 broad.mit.edu 36 3 45726132 45726132 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014016 exon5 c.C472A p.L158I . . . SACM1L 22908 broad.mit.edu 36 3 45760126 45760126 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014016 exon20 c.C1725T p.V575V . . . CCR9 10803 broad.mit.edu 36 3 45918019 45918019 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006641 exon2 c.G699T p.K233N . . . FYCO1 79443 broad.mit.edu 36 3 45989661 45989661 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024513 exon6 c.C462A p.L154L . . . CCR3 1232 broad.mit.edu 36 3 46282081 46282081 + Missense_Mutation SNP G A A rs56177184 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178328 exon3 c.G491A p.R164Q . . . CCR3 1232 broad.mit.edu 36 3 46282370 46282370 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178328 exon3 c.G780A p.R260R . . . LRRC2 79442 broad.mit.edu 36 3 46549383 46549383 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024512 exon5 c.G511T p.E171X . . . LRRC2 79442 broad.mit.edu 36 3 46561719 46561719 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024512 exon3 c.G154A p.E52K . . . ITPR1 3708 broad.mit.edu 36 3 4674844 4674844 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099952 exon13 c.C1033T p.R345W . . . CCDC12 151903 broad.mit.edu 36 3 46938760 46938760 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144716 exon6 c.C427T p.R143W . . . SETD2 29072 broad.mit.edu 36 3 47073952 47073952 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014159 exon15 c.G6326A p.R2109Q . . . ITPR1 3708 broad.mit.edu 36 3 4710223 4710223 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099952 exon33 c.C4052A p.S1351Y . . . SETD2 29072 broad.mit.edu 36 3 47133135 47133135 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014159 exon4 c.G4568A p.R1523H . . . SETD2 29072 broad.mit.edu 36 3 47136968 47136968 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014159 exon3 c.G4162T p.D1388Y . . . SETD2 29072 broad.mit.edu 36 3 47139581 47139581 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014159 exon3 c.G1549T p.E517X . . . KIF9 64147 broad.mit.edu 36 3 47253105 47253105 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182902 exon18 c.G1933A p.E645K . . . KLHL18 23276 broad.mit.edu 36 3 47339195 47339195 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025010 exon3 c.C394T p.R132X . . . SCAP 22937 broad.mit.edu 36 3 47437482 47437482 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012235 exon11 c.C1287A p.F429L . . . ITPR1 3708 broad.mit.edu 36 3 4783230 4783230 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099952 exon42 c.G5417A p.R1806H . . . DHX30 22907 broad.mit.edu 36 3 47843877 47843877 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138615 exon5 c.A161C p.K54T . . . DHX30 22907 broad.mit.edu 36 3 47866178 47866178 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138615 exon21 c.C3246A p.S1082S . . . ITPR1 3708 broad.mit.edu 36 3 4792094 4792094 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099952 exon44 c.G6004A p.E2002K . . . MAP4 4134 broad.mit.edu 36 3 47931318 47931318 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134364 exon8 c.G1992T p.E664D . . . ITPR1 3708 broad.mit.edu 36 3 4829834 4829834 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099952 exon54 c.G7333A p.E2445K . . . NME6 10201 broad.mit.edu 36 3 48313305 48313305 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005793 exon3 c.C133A p.L45I . . . ITPR1 3708 broad.mit.edu 36 3 4831740 4831740 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099952 exon56 c.C7561T p.P2521S . . . FBXW12 285231 broad.mit.edu 36 3 48389808 48389808 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207102 exon3 c.A97G p.N33D . . . PLXNB1 5364 broad.mit.edu 36 3 48428932 48428932 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002673 exon26 c.C4956T p.F1652F . . . COL7A1 1294 broad.mit.edu 36 3 48577262 48577262 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000094 exon117 c.G8776A p.E2926K . . . COL7A1 1294 broad.mit.edu 36 3 48594923 48594923 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000094 exon45 c.G4591T p.G1531X . . . COL7A1 1294 broad.mit.edu 36 3 48605050 48605050 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000094 exon7 c.C933T p.Y311Y . . . COL7A1 1294 broad.mit.edu 36 3 48606010 48606010 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000094 exon3 c.C390A p.V130V . . . SLC25A20 788 broad.mit.edu 36 3 48904432 48904432 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000387 exon2 c.G183T p.K61N . . . ARIH2 10425 broad.mit.edu 36 3 48983131 48983131 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006321 exon8 c.G760A p.E254K . . . IMPDH2 3615 broad.mit.edu 36 3 49039473 49039473 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000884 exon6 c.G543T p.K181N . . . IMPDH2 3615 broad.mit.edu 36 3 49040912 49040912 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000884 exon3 c.C205T p.P69S . . . QRICH1 54870 broad.mit.edu 36 3 49056899 49056899 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198880 exon6 c.C1714A p.L572I . . . QRICH1 54870 broad.mit.edu 36 3 49059555 49059555 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198880 exon4 c.G1467T p.K489N . . . LAMB2 3913 broad.mit.edu 36 3 49138564 49138564 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002292 exon17 c.G2184T p.E728D . . . LAMB2 3913 broad.mit.edu 36 3 49144834 49144834 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002292 exon3 c.G258T p.K86N . . . CCDC36 339834 broad.mit.edu 36 3 49267920 49267920 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178173 exon9 c.G626T p.R209I . . . C3orf62 375341 broad.mit.edu 36 3 49289049 49289049 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198562 exon1 c.G261A p.E87E . . . TCTA 6988 broad.mit.edu 36 3 49427273 49427273 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022171 exon3 c.G286A p.E96K . . . DAG1 1605 broad.mit.edu 36 3 49544448 49544448 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004393 exon3 c.G1500T p.K500N . . . BSN 8927 broad.mit.edu 36 3 49665871 49665871 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003458 exon5 c.C3878A p.A1293D . . . RNF123 63891 broad.mit.edu 36 3 49712754 49712754 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022064 exon13 c.C1075T p.H359Y . . . RBM6 10180 broad.mit.edu 36 3 50070859 50070859 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005777 exon10 c.T1990C p.Y664H . . . RBM6 10180 broad.mit.edu 36 3 50078857 50078857 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005777 exon17 c.A2861C p.K954T . . . RBM6 10180 broad.mit.edu 36 3 50087663 50087663 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005777 exon20 c.G3142T p.D1048Y . . . RBM5 10181 broad.mit.edu 36 3 50130777 50130777 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005778 exon25 c.C2332T p.R778W . . . SLC38A3 10991 broad.mit.edu 36 3 50227841 50227841 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006841 exon5 c.G319A p.A107T . . . DOCK3 1795 broad.mit.edu 36 3 51087897 51087897 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004947 exon7 c.G494T p.R165I . . . DOCK3 1795 broad.mit.edu 36 3 51171753 51171753 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004947 exon11 c.C826T p.R276C . . . DOCK3 1795 broad.mit.edu 36 3 51173150 51173150 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004947 exon12 c.G973T p.G325X . . . DOCK3 1795 broad.mit.edu 36 3 51239903 51239903 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004947 exon16 c.C1486A p.Q496K . . . DOCK3 1795 broad.mit.edu 36 3 51287568 51287568 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_004947 exon25 c.T2526G p.A842A . . . RBM15B 29890 broad.mit.edu 36 3 51406345 51406345 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013286 exon1 c.C2475A p.V825V . . . VPRBP 9730 broad.mit.edu 36 3 51452957 51452957 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001171904 exon6 c.G375T p.E125D . . . VPRBP 9730 broad.mit.edu 36 3 51480056 51480056 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001171904 exon3 c.C116A p.S39Y . . . IQCF2 389123 broad.mit.edu 36 3 51870732 51870732 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203424 exon1 c.C10T p.R4X . . . IQCF1 132141 broad.mit.edu 36 3 51903952 51903952 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152397 exon4 c.G612T p.K204N . . . IQCF1 132141 broad.mit.edu 36 3 51904027 51904027 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152397 exon4 c.G537A p.Q179Q . . . RRP9 9136 broad.mit.edu 36 3 51947192 51947192 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004704 exon3 c.T239C p.L80P . . . DUSP7 1849 broad.mit.edu 36 3 52063054 52063054 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001947 exon2 c.C894A p.I298I . . . EDEM1 9695 broad.mit.edu 36 3 5221800 5221800 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014674 exon6 c.G1091A p.G364D . . . TLR9 54106 broad.mit.edu 36 3 52230698 52230698 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017442 exon2 c.C2674T p.R892W . . . TLR9 54106 broad.mit.edu 36 3 52231426 52231426 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017442 exon2 c.G1946A p.R649H . . . EDEM1 9695 broad.mit.edu 36 3 5226868 5226868 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014674 exon9 c.G1518T p.K506N . . . DNAH1 25981 broad.mit.edu 36 3 52365773 52365773 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015512 exon22 c.G3797A p.R1266H . . . DNAH1 25981 broad.mit.edu 36 3 52378986 52378986 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015512 exon38 c.C6049T p.P2017S . . . DNAH1 25981 broad.mit.edu 36 3 52387687 52387687 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015512 exon47 c.G7228A p.E2410K . . . DNAH1 25981 broad.mit.edu 36 3 52392515 52392515 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015512 exon51 c.C8015T p.A2672V . . . NISCH 11188 broad.mit.edu 36 3 52501325 52501325 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007184 exon21 c.C4302T p.F1434F . . . PBRM1 55193 broad.mit.edu 36 3 52677641 52677641 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018313 exon4 c.G297A p.Q99Q . . . NEK4 6787 broad.mit.edu 36 3 52774972 52774972 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193533 exon3 c.T370C p.S124P . . . ITIH1 3697 broad.mit.edu 36 3 52791233 52791233 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166434 exon6 c.C414A p.F138L . . . ITIH1 3697 broad.mit.edu 36 3 52798832 52798832 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166434 exon17 c.C1817A p.P606H . . . SFMBT1 51460 broad.mit.edu 36 3 52920182 52920182 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005158 exon18 c.C1783T p.R595W . . . SFMBT1 51460 broad.mit.edu 36 3 52922582 52922582 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005158 exon16 c.G1572A p.E524E . . . SFMBT1 51460 broad.mit.edu 36 3 52952493 52952493 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005158 exon5 c.G280A p.D94N . . . CACNA1D 776 broad.mit.edu 36 3 53506498 53506498 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128839 exon2 c.G347A p.R116Q . . . ACTR8 93973 broad.mit.edu 36 3 53882122 53882122 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022899 exon9 c.C1138T p.R380X . . . ACTR8 93973 broad.mit.edu 36 3 53885025 53885025 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022899 exon7 c.C901T p.R301W . . . CACNA2D3 55799 broad.mit.edu 36 3 54761669 54761669 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018398 exon12 c.C1171T p.R391C . . . CACNA2D3 55799 broad.mit.edu 36 3 54847686 54847686 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018398 exon16 c.G1522T p.E508X . . . CACNA2D3 55799 broad.mit.edu 36 3 54897046 54897046 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018398 exon24 c.G2077T p.E693X . . . CACNA2D3 55799 broad.mit.edu 36 3 54908907 54908907 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018398 exon27 c.G2421A p.L807L . . . LRTM1 57408 broad.mit.edu 36 3 54933686 54933686 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020678 exon2 c.G604T p.G202W . . . CACNA2D3 55799 broad.mit.edu 36 3 55027328 55027328 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018398 exon35 c.C2931A p.V977V . . . ERC2 26059 broad.mit.edu 36 3 55743902 55743902 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015576 exon14 c.G2643A p.T881T . . . ERC2 26059 broad.mit.edu 36 3 55897579 55897579 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015576 exon13 c.G2436T p.Q812H . . . ERC2 26059 broad.mit.edu 36 3 56182522 56182522 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015576 exon4 c.G1141A p.E381K . . . CCDC66 285331 broad.mit.edu 36 3 56626490 56626490 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001141947 exon14 c.G2154T p.K718N . . . C3orf63 23272 broad.mit.edu 36 3 56656190 56656190 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001112736 exon14 c.C1615T p.R539X . . . IL17RD 54756 broad.mit.edu 36 3 57107079 57107079 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017563 exon12 c.C1692T p.F564F . . . IL17RD 54756 broad.mit.edu 36 3 57112188 57112188 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017563 exon9 c.G839T p.R280I . . . HESX1 8820 broad.mit.edu 36 3 57207352 57207352 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003865 exon4 c.A471C p.Q157H . . . HESX1 8820 broad.mit.edu 36 3 57207924 57207924 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003865 exon2 c.C254T p.S85L . . . APPL1 26060 broad.mit.edu 36 3 57277550 57277550 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012096 exon21 c.G1978T p.E660X . . . APPL1 26060 broad.mit.edu 36 3 57278627 57278627 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012096 exon22 c.C2002T p.R668W . . . DNAH12 201625 broad.mit.edu 36 3 57469293 57469293 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178504 exon7 c.C557A p.S186Y . . . ARF4 378 broad.mit.edu 36 3 57536326 57536326 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001660 exon5 c.C445T p.R149C . . . FAM116A 201627 broad.mit.edu 36 3 57602444 57602444 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152678 exon12 c.C1108T p.R370X . . . SLMAP 7871 broad.mit.edu 36 3 57873170 57873170 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007159 exon17 c.C1620T p.I540I . . . FLNB 2317 broad.mit.edu 36 3 58042411 58042411 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164317 exon4 c.G655T p.E219X . . . FLNB 2317 broad.mit.edu 36 3 58069324 58069324 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164317 exon13 c.A2041C p.K681Q . . . DNASE1L3 1776 broad.mit.edu 36 3 58161863 58161863 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004944 exon7 c.C447T p.F149F . . . RPP14 11102 broad.mit.edu 36 3 58278219 58278219 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098783 exon6 c.C331A p.L111I . . . PXK 54899 broad.mit.edu 36 3 58343403 58343403 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017771 exon4 c.C324A p.I108I . . . PXK 54899 broad.mit.edu 36 3 58356437 58356437 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017771 exon9 c.G733T p.D245Y . . . PDHB 5162 broad.mit.edu 36 3 58388939 58388939 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000925 exon10 c.G942A p.A314A . . . KCTD6 200845 broad.mit.edu 36 3 58462251 58462251 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153331 exon2 c.C566A p.S189Y . . . C3orf67 200844 broad.mit.edu 36 3 58792484 58792484 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198463 exon13 c.G1390A p.D464N . . . PTPRG 5793 broad.mit.edu 36 3 62229849 62229849 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002841 exon20 c.C2974T p.R992C . . . PTPRG 5793 broad.mit.edu 36 3 62237750 62237750 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002841 exon25 c.C3623A p.A1208D . . . FEZF2 55079 broad.mit.edu 36 3 62330921 62330921 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018008 exon5 c.C1257T p.C419C . . . FEZF2 55079 broad.mit.edu 36 3 62332320 62332320 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018008 exon3 c.C915T p.F305F . . . CADPS 8618 broad.mit.edu 36 3 62426163 62426163 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183393 exon23 c.C3318T p.F1106F . . . CADPS 8618 broad.mit.edu 36 3 62714185 62714185 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183393 exon3 c.G859A p.E287K . . . ATXN7 6314 broad.mit.edu 36 3 63956293 63956293 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001177387 exon11 c.G1755A p.P585P . . . PSMD6 9861 broad.mit.edu 36 3 63983084 63983084 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014814 exon2 c.C301T p.R101C . . . PRICKLE2 166336 broad.mit.edu 36 3 64060570 64060570 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198859 exon8 c.G1732T p.D578Y . . . PRICKLE2 166336 broad.mit.edu 36 3 64113944 64113944 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198859 exon6 c.C741T p.F247F . . . ADAMTS9 56999 broad.mit.edu 36 3 64501886 64501886 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182920 exon36 c.C5446T p.R1816W . . . ADAMTS9 56999 broad.mit.edu 36 3 64562854 64562854 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182920 exon26 c.C3823T p.R1275W . . . MAGI1 9223 broad.mit.edu 36 3 65321956 65321956 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015520 exon23 c.C3676T p.R1226C . . . MAGI1 9223 broad.mit.edu 36 3 65998991 65998991 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015520 exon1 c.G33A p.W11X . . . LRIG1 26018 broad.mit.edu 36 3 66595556 66595556 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015541 exon2 c.G286T p.E96X . . . KBTBD8 84541 broad.mit.edu 36 3 67141219 67141219 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032505 exon4 c.G1526T p.W509L . . . KBTBD8 84541 broad.mit.edu 36 3 67141338 67141338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032505 exon4 c.G1645A p.V549I . . . GRM7 2917 broad.mit.edu 36 3 6878441 6878441 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000844 exon1 c.C366T p.F122F . . . C3orf64 285203 broad.mit.edu 36 3 69109554 69109554 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173654 exon15 c.G1237A p.D413N . . . UBA3 9039 broad.mit.edu 36 3 69195911 69195911 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198195 exon6 c.G428A p.R143Q . . . LMOD3 56203 broad.mit.edu 36 3 69254019 69254019 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198271 exon1 c.C209A p.S70Y . . . FRMD4B 23150 broad.mit.edu 36 3 69308495 69308495 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015123 exon22 c.T2854C p.S952P . . . MITF 4286 broad.mit.edu 36 3 70091115 70091115 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198158 exon8 c.G694T p.D232Y . . . SHQ1 55164 broad.mit.edu 36 3 72882556 72882556 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018130 exon11 c.G1303A p.A435T . . . EBLN2 55096 broad.mit.edu 36 3 73194248 73194248 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018029 exon1 c.C326A p.S109Y . . . EBLN2 55096 broad.mit.edu 36 3 73194677 73194677 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018029 exon1 c.T755C p.L252S . . . PDZRN3 23024 broad.mit.edu 36 3 73516143 73516143 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015009 exon10 c.C2264T p.S755L . . . GRM7 2917 broad.mit.edu 36 3 7469314 7469314 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000844 exon6 c.G1195T p.D399Y . . . GRM7 2917 broad.mit.edu 36 3 7469394 7469394 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000844 exon6 c.G1275T p.M425I . . . ROBO2 6092 broad.mit.edu 36 3 77706416 77706416 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002942 exon14 c.C2048T p.S683L . . . ROBO2 6092 broad.mit.edu 36 3 77734224 77734224 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002942 exon20 c.G3028T p.E1010X . . . ROBO1 6091 broad.mit.edu 36 3 78731961 78731961 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002941 exon30 c.G4933T p.E1645X . . . ROBO1 6091 broad.mit.edu 36 3 78746508 78746508 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002941 exon28 c.G4415A p.R1472H . . . ROBO1 6091 broad.mit.edu 36 3 78759228 78759228 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002941 exon26 c.G3808A p.E1270K . . . ROBO1 6091 broad.mit.edu 36 3 78783620 78783620 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002941 exon19 c.C2764T p.R922C . . . ROBO1 6091 broad.mit.edu 36 3 78791591 78791591 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002941 exon17 c.G2377T p.A793S . . . ROBO1 6091 broad.mit.edu 36 3 78799812 78799812 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002941 exon14 c.C1877A p.P626H . . . GBE1 2632 broad.mit.edu 36 3 81802763 81802763 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000158 exon3 c.A345C p.K115N . . . CADM2 253559 broad.mit.edu 36 3 86044376 86044376 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167674 exon5 c.A666G p.E222E . . . CADM2 253559 broad.mit.edu 36 3 86197550 86197550 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167674 exon9 c.G1169A p.R390Q . . . CHMP2B 25978 broad.mit.edu 36 3 87377646 87377646 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014043 exon3 c.G219A p.T73T . . . CHMP2B 25978 broad.mit.edu 36 3 87385318 87385318 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014043 exon5 c.C499A p.L167I . . . POU1F1 5449 broad.mit.edu 36 3 87391799 87391799 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001122757 exon6 c.C889T p.R297W . . . POU1F1 5449 broad.mit.edu 36 3 87396200 87396200 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122757 exon3 c.G445T p.D149Y . . . OXTR 5021 broad.mit.edu 36 3 8784060 8784060 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000916 exon3 c.C814T p.R272C . . . HTR1F 3355 broad.mit.edu 36 3 88122724 88122724 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000866 exon2 c.C135T p.I45I . . . CGGBP1 8545 broad.mit.edu 36 3 88187683 88187683 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008390 exon4 c.C134A p.S45Y . . . ZNF654 55279 broad.mit.edu 36 3 88272217 88272217 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018293 exon1 c.A1067C p.N356T . . . EPHA3 2042 broad.mit.edu 36 3 89531333 89531333 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_182644 exon7 c.T1607G p.F536C . . . RAD18 56852 broad.mit.edu 36 3 8958425 8958425 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020165 exon5 c.G330T p.K110N . . . SRGAP3 9901 broad.mit.edu 36 3 9009706 9009706 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014850 exon20 c.G2442T p.K814N . . . SRGAP3 9901 broad.mit.edu 36 3 9030525 9030525 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014850 exon16 c.A1815G p.K605K . . . THUMPD3 25917 broad.mit.edu 36 3 9387979 9387979 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015453 exon4 c.A566C p.E189A . . . SETD5 55209 broad.mit.edu 36 3 9457366 9457366 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001080517 exon8 c.T794G p.I265S . . . SETD5 55209 broad.mit.edu 36 3 9470466 9470466 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080517 exon17 c.C2390A p.S797X . . . SETD5 55209 broad.mit.edu 36 3 9490110 9490110 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001080517 exon20 c.A3386C p.K1129T . . . PROS1 5627 broad.mit.edu 36 3 95102338 95102338 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000313 exon7 c.G727T p.D243Y . . . PROS1 5627 broad.mit.edu 36 3 95107327 95107327 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000313 exon6 c.G592T p.D198Y . . . PROS1 5627 broad.mit.edu 36 3 95107668 95107668 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000313 exon5 c.A356G p.D119G . . . DHFRL1 200895 broad.mit.edu 36 3 95262507 95262507 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195643 exon2 c.T539G p.F180C . . . NSUN3 63899 broad.mit.edu 36 3 95285750 95285750 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022072 exon3 c.T232A p.S78T . . . CPNE9 151835 broad.mit.edu 36 3 9729459 9729459 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153635 exon8 c.C492A p.F164L . . . BRPF1 7862 broad.mit.edu 36 3 9759841 9759841 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004634 exon7 c.C2197T p.R733W . . . OGG1 4968 broad.mit.edu 36 3 9768482 9768482 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016828 exon3 c.C414T p.I138I . . . CAMK1 8536 broad.mit.edu 36 3 9776429 9776429 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003656 exon9 c.G751T p.D251Y . . . CAMK1 8536 broad.mit.edu 36 3 9778436 9778436 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003656 exon6 c.G435T p.E145D . . . TADA3 10474 broad.mit.edu 36 3 9803898 9803898 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133480 exon5 c.G691T p.E231X . . . EPHA6 285220 broad.mit.edu 36 3 98921851 98921851 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080448 exon15 c.C2841T p.F947F . . . OR5H14 403273 broad.mit.edu 36 3 99351728 99351728 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001005514 exon1 c.A809G p.Q270R . . . OR5H15 403274 broad.mit.edu 36 3 99370827 99370827 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005515 exon1 c.G594T p.M198I . . . OR5H6 79295 broad.mit.edu 36 3 99466786 99466786 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005479 exon1 c.G968A p.S323N . . . OR5H2 79310 broad.mit.edu 36 3 99484426 99484426 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005482 exon1 c.C5T p.S2L . . . OR5H2 79310 broad.mit.edu 36 3 99484776 99484776 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005482 exon1 c.C355A p.L119I . . . OR5K3 403277 broad.mit.edu 36 3 99592331 99592331 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005516 exon1 c.T132C p.G44G . . . OR5K3 403277 broad.mit.edu 36 3 99592509 99592509 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005516 exon1 c.C310A p.L104I . . . PRRT3 285368 broad.mit.edu 36 3 9965983 9965983 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207351 exon2 c.G817A p.A273T . . . OR5K1 26339 broad.mit.edu 36 3 99671322 99671322 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004736 exon1 c.C212T p.S71F . . . OR5K1 26339 broad.mit.edu 36 3 99671622 99671622 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004736 exon1 c.C512T p.S171L . . . CLDND1 56650 broad.mit.edu 36 3 99722838 99722838 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019895 exon3 c.G121T p.E41X . . . ST3GAL6 10402 broad.mit.edu 36 3 99989643 99989643 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006100 exon8 c.G505T p.E169X . . . ST3GAL6 10402 broad.mit.edu 36 3 99989867 99989867 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006100 exon9 c.A626C p.N209T . . . ST3GAL6 10402 broad.mit.edu 36 3 99995272 99995272 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006100 exon11 c.G973T p.V325L . . . ANO4 121601 broad.mit.edu 36 12 100014539 100014539 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178826 exon18 c.C1728T p.I576I . . . SLC5A8 160728 broad.mit.edu 36 12 100076193 100076193 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145913 exon14 c.G1675T p.E559X . . . SLC5A8 160728 broad.mit.edu 36 12 100079904 100079904 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145913 exon13 c.A1609C p.I537L . . . SLC5A8 160728 broad.mit.edu 36 12 100102110 100102110 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145913 exon8 c.G985A p.D329N . . . SLC5A8 160728 broad.mit.edu 36 12 100122444 100122444 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145913 exon2 c.C382T p.R128C . . . UTP20 27340 broad.mit.edu 36 12 100226148 100226148 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014503 exon18 c.C2050T p.L684F . . . UTP20 27340 broad.mit.edu 36 12 100252354 100252354 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014503 exon29 c.G3582T p.E1194D . . . UTP20 27340 broad.mit.edu 36 12 100260861 100260861 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014503 exon35 c.C4308T p.F1436F . . . UTP20 27340 broad.mit.edu 36 12 100297342 100297342 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014503 exon57 c.T7459G p.F2487V . . . ARL1 400 broad.mit.edu 36 12 100320827 100320827 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001177 exon3 c.G171A p.T57T . . . ARL1 400 broad.mit.edu 36 12 100323839 100323839 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001177 exon2 c.G56A p.R19K . . . CLEC1B 51266 broad.mit.edu 36 12 10037125 10037125 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001099431 exon5 c.A475C p.N159H . . . CLEC1B 51266 broad.mit.edu 36 12 10039082 10039082 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099431 exon4 c.C370T p.R124C . . . MYBPC1 4604 broad.mit.edu 36 12 100585730 100585730 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002465 exon23 c.C2446T p.R816C . . . CHPT1 56994 broad.mit.edu 36 12 100644302 100644302 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020244 exon8 c.G1165A p.A389T . . . GNPTAB 79158 broad.mit.edu 36 12 100683205 100683205 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024312 exon13 c.C1621A p.H541N . . . ERC1 23085 broad.mit.edu 36 12 1007820 1007820 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178039 exon2 c.G490T p.E164X . . . CCDC53 51019 broad.mit.edu 36 12 100964006 100964006 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016053 exon3 c.C172T p.R58C . . . C12orf48 55010 broad.mit.edu 36 12 101082361 101082361 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017915 exon5 c.A511C p.R171R . . . CLEC1A 51267 broad.mit.edu 36 12 10119460 10119460 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016511 exon4 c.C453A p.F151L . . . IGF1 3479 broad.mit.edu 36 12 101393579 101393579 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111285 exon2 c.C192T p.F64F . . . CLEC7A 64581 broad.mit.edu 36 12 10173944 10173944 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022570 exon1 c.A5C p.E2A . . . STAB2 55576 broad.mit.edu 36 12 102573468 102573468 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017564 exon15 c.C1713T p.L571L . . . STAB2 55576 broad.mit.edu 36 12 102587508 102587508 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017564 exon21 c.C2232A p.F744L . . . STAB2 55576 broad.mit.edu 36 12 102624786 102624786 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017564 exon38 c.C4083A p.I1361I . . . STAB2 55576 broad.mit.edu 36 12 102645183 102645183 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017564 exon47 c.C4860T p.F1620F . . . Unknown 0 broad.mit.edu 36 12 102711124 102711124 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031701 exon9 c.G967A p.D323N . . . HSP90B1 7184 broad.mit.edu 36 12 102855684 102855684 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003299 exon6 c.A825G p.I275M . . . HSP90B1 7184 broad.mit.edu 36 12 102857441 102857441 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003299 exon8 c.G1000A p.E334K . . . HSP90B1 7184 broad.mit.edu 36 12 102860519 102860519 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003299 exon12 c.G1459T p.E487X . . . GLT8D2 83468 broad.mit.edu 36 12 102932931 102932931 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031302 exon4 c.G102T p.K34N . . . GLT8D2 83468 broad.mit.edu 36 12 102933002 102933002 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031302 exon4 c.C31T p.L11L . . . HCFC2 29915 broad.mit.edu 36 12 102985990 102985990 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013320 exon3 c.G448A p.E150K . . . HCFC2 29915 broad.mit.edu 36 12 103021140 103021140 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013320 exon15 c.C2338T p.R780W . . . EID3 493861 broad.mit.edu 36 12 103222396 103222396 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008394 exon1 c.G554A p.R185Q . . . CHST11 50515 broad.mit.edu 36 12 103519820 103519820 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173982 exon2 c.G110A p.R37Q . . . SLC41A2 84102 broad.mit.edu 36 12 103762466 103762466 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032148 exon9 c.C1450T p.L484F . . . ALDH1L2 160428 broad.mit.edu 36 12 103948317 103948317 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001034173 exon21 c.G2431A p.V811M . . . ALDH1L2 160428 broad.mit.edu 36 12 103952225 103952225 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001034173 exon19 c.G2227A p.E743K . . . ALDH1L2 160428 broad.mit.edu 36 12 103956016 103956016 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001034173 exon18 c.C2140T p.R714X . . . KIAA1033 23325 broad.mit.edu 36 12 104067558 104067558 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015275 exon25 c.C2550A p.F850L . . . KIAA1033 23325 broad.mit.edu 36 12 104077941 104077941 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015275 exon29 c.G2945A p.R982Q . . . APPL2 55198 broad.mit.edu 36 12 104106326 104106326 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018171 exon17 c.C1489T p.R497W . . . APPL2 55198 broad.mit.edu 36 12 104117387 104117387 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018171 exon10 c.G757T p.E253X . . . KLRC3 3823 broad.mit.edu 36 12 10462259 10462259 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007333 exon4 c.C437T p.A146V . . . NUAK1 9891 broad.mit.edu 36 12 104988755 104988755 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014840 exon6 c.C759T p.F253F . . . CKAP4 10970 broad.mit.edu 36 12 105157762 105157762 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006825 exon2 c.G979A p.E327K . . . POLR3B 55703 broad.mit.edu 36 12 105296222 105296222 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018082 exon8 c.G544T p.E182X . . . POLR3B 55703 broad.mit.edu 36 12 105348198 105348198 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018082 exon14 c.G1281T p.K427N . . . POLR3B 55703 broad.mit.edu 36 12 105351648 105351648 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018082 exon16 c.G1649A p.R550Q . . . RFX4 5992 broad.mit.edu 36 12 105627254 105627254 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032491 exon5 c.C568T p.R190X . . . RFX4 5992 broad.mit.edu 36 12 105627334 105627334 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032491 exon5 c.C648T p.F216F . . . RIC8B 55188 broad.mit.edu 36 12 105701911 105701911 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018157 exon2 c.G91A p.A31T . . . RIC8B 55188 broad.mit.edu 36 12 105743706 105743706 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018157 exon4 c.G814T p.D272Y . . . MTERFD3 80298 broad.mit.edu 36 12 105895525 105895525 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033050 exon3 c.T1098C p.I366I . . . CRY1 1407 broad.mit.edu 36 12 105917888 105917888 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004075 exon6 c.C787T p.R263X . . . CRY1 1407 broad.mit.edu 36 12 105940092 105940092 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004075 exon2 c.T167G p.L56R . . . ERC1 23085 broad.mit.edu 36 12 1062747 1062747 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178039 exon3 c.C826T p.R276W . . . ERC1 23085 broad.mit.edu 36 12 1062941 1062941 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178039 exon3 c.G1020T p.E340D . . . MAGOHB 55110 broad.mit.edu 36 12 10650223 10650223 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018048 exon5 c.G365A p.R122Q . . . PWP1 11137 broad.mit.edu 36 12 106606611 106606611 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_007062 exon3 c.A221G p.E74G . . . PRDM4 11108 broad.mit.edu 36 12 106669966 106669966 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012406 exon5 c.G482C p.G161A . . . SART3 9733 broad.mit.edu 36 12 107448129 107448129 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014706 exon15 c.A1835C p.K612T . . . SELPLG 6404 broad.mit.edu 36 12 107542080 107542080 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003006 exon2 c.G133A p.E45K . . . CORO1C 23603 broad.mit.edu 36 12 107566555 107566555 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014325 exon10 c.C1260T p.C420C . . . CORO1C 23603 broad.mit.edu 36 12 107566657 107566657 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014325 exon10 c.C1158A p.I386I . . . SSH1 54434 broad.mit.edu 36 12 107716974 107716974 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161331 exon12 c.G1313A p.R438H . . . DAO 1610 broad.mit.edu 36 12 107803047 107803047 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001917 exon2 c.G136A p.D46N . . . DAO 1610 broad.mit.edu 36 12 107818399 107818399 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001917 exon11 c.G1003A p.E335K . . . USP30 84749 broad.mit.edu 36 12 107978970 107978970 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032663 exon2 c.C184T p.R62C . . . ACACB 32 broad.mit.edu 36 12 108163443 108163443 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001093 exon35 c.G4996T p.E1666X . . . FOXN4 121643 broad.mit.edu 36 12 108203605 108203605 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_213596 exon9 c.C1284T p.F428F . . . MYO1H 283446 broad.mit.edu 36 12 108318682 108318682 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001101421 exon3 c.T353G p.I118S . . . MYO1H 283446 broad.mit.edu 36 12 108367717 108367717 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001101421 exon30 c.A2962C p.S988R . . . UBE3B 89910 broad.mit.edu 36 12 108420043 108420043 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130466 exon10 c.C751T p.R251W . . . UBE3B 89910 broad.mit.edu 36 12 108431867 108431867 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130466 exon16 c.C1706A p.S569Y . . . UBE3B 89910 broad.mit.edu 36 12 108448597 108448597 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130466 exon24 c.G2620T p.E874X . . . TAS2R7 50837 broad.mit.edu 36 12 10845987 10845987 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023919 exon1 c.G450T p.E150D . . . MMAB 326625 broad.mit.edu 36 12 108479252 108479252 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052845 exon9 c.G717T p.M239I . . . TAS2R9 50835 broad.mit.edu 36 12 10853745 10853745 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023917 exon1 c.G197T p.G66V . . . TAS2R10 50839 broad.mit.edu 36 12 10870011 10870011 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023921 exon1 c.C125T p.T42M . . . TRPV4 59341 broad.mit.edu 36 12 108714564 108714564 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021625 exon12 c.C1878A p.I626I . . . GIT2 9815 broad.mit.edu 36 12 108855225 108855225 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135214 exon19 c.G2131A p.D711N . . . GIT2 9815 broad.mit.edu 36 12 108861400 108861400 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135214 exon16 c.G1677A p.E559E . . . ANKRD13A 88455 broad.mit.edu 36 12 108934310 108934310 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033121 exon2 c.C214T p.R72C . . . ANKRD13A 88455 broad.mit.edu 36 12 108946291 108946291 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033121 exon7 c.C792T p.Y264Y . . . ANKRD13A 88455 broad.mit.edu 36 12 108956053 108956053 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033121 exon13 c.G1417T p.D473Y . . . C12orf76 400073 broad.mit.edu 36 12 108979451 108979452 + Missense_Mutation DNP CC TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_207435 exon4 c.224_225TA . . . . ATP2A2 488 broad.mit.edu 36 12 109268207 109268207 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170665 exon19 c.C2760A p.S920S . . . C12orf24 29902 broad.mit.edu 36 12 109408768 109408768 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013300 exon5 c.G483T p.Q161H . . . VPS29 51699 broad.mit.edu 36 12 109418206 109418206 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016226 exon2 c.C189T p.F63F . . . RAD9B 144715 broad.mit.edu 36 12 109434976 109434976 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152442 exon5 c.G398T p.R133I . . . RAD9B 144715 broad.mit.edu 36 12 109440919 109440919 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152442 exon7 c.C651A p.F217L . . . RAD9B 144715 broad.mit.edu 36 12 109453776 109453776 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152442 exon12 c.G1249T p.E417X . . . PPTC7 160760 broad.mit.edu 36 12 109474101 109474101 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139283 exon2 c.C279A p.F93L . . . TAS2R13 50838 broad.mit.edu 36 12 10952352 10952352 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023920 exon1 c.C813A p.V271V . . . PPP1CC 5501 broad.mit.edu 36 12 109644797 109644797 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002710 exon5 c.C610A p.L204I . . . CCDC63 160762 broad.mit.edu 36 12 109826815 109826815 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152591 exon11 c.G1383T p.E461D . . . CUX2 23316 broad.mit.edu 36 12 110226397 110226397 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015267 exon10 c.C754T p.R252X . . . CUX2 23316 broad.mit.edu 36 12 110264176 110264176 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015267 exon21 c.G3595A p.E1199K . . . TAS2R20 259295 broad.mit.edu 36 12 11041488 11041488 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_176889 exon1 c.C254A p.S85Y . . . ATXN2 6311 broad.mit.edu 36 12 110435678 110435678 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002973 exon11 c.G1904T p.R635I . . . BRAP 8315 broad.mit.edu 36 12 110577779 110577779 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006768 exon10 c.C1285T p.R429W . . . ACAD10 80724 broad.mit.edu 36 12 110652081 110652081 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025247 exon10 c.C1332T p.I444I . . . TMEM116 89894 broad.mit.edu 36 12 110859430 110859430 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138341 exon6 c.C90A p.S30R . . . TMEM116 89894 broad.mit.edu 36 12 110860370 110860370 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138341 exon5 c.C67A p.Q23K . . . NAA25 80018 broad.mit.edu 36 12 110970542 110970542 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024953 exon16 c.C1817A p.S606Y . . . TAS2R46 259292 broad.mit.edu 36 12 11105559 11105559 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_176887 exon1 c.C602A p.S201Y . . . TRAFD1 10906 broad.mit.edu 36 12 111063342 111063342 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006700 exon5 c.G574T p.D192Y . . . C12orf51 283450 broad.mit.edu 36 12 111139079 111139079 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001109662 exon46 c.C6750T p.I2250I . . . C12orf51 283450 broad.mit.edu 36 12 111169237 111169237 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001109662 exon28 c.C3848A p.S1283Y . . . RPL6 6128 broad.mit.edu 36 12 111328116 111328116 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001024662 exon6 c.C638T p.T213I . . . PTPN11 5781 broad.mit.edu 36 12 111426933 111426933 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002834 exon15 c.G1764T p.Q588H . . . RPH3A 22895 broad.mit.edu 36 12 111812228 111812228 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014954 exon17 c.C1568T p.T523I . . . OAS3 4940 broad.mit.edu 36 12 111883376 111883376 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006187 exon8 c.A1775G p.N592S . . . OAS2 4939 broad.mit.edu 36 12 111931342 111931342 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002535 exon10 c.C1963A p.L655I . . . RASAL1 8437 broad.mit.edu 36 12 112041355 112041355 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004658 exon8 c.G603T p.W201C . . . C12orf52 84934 broad.mit.edu 36 12 112113999 112113999 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032848 exon4 c.G804T p.W268C . . . IQCD 115811 broad.mit.edu 36 12 112130146 112130146 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138451 exon2 c.C209T p.S70L . . . TPCN1 53373 broad.mit.edu 36 12 112182668 112182668 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017901 exon3 c.A225C p.A75A . . . TBX5 6910 broad.mit.edu 36 12 113326054 113326054 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000192 exon2 c.G33A p.A11A . . . PRB4 5545 broad.mit.edu 36 12 11353575 11353575 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002723 exon2 c.A96C p.I32I . . . TBX3 6926 broad.mit.edu 36 12 113605070 113605070 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005996 exon1 c.C319A p.L107M . . . MED13L 23389 broad.mit.edu 36 12 114931118 114931118 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015335 exon10 c.G1483A p.E495K . . . MED13L 23389 broad.mit.edu 36 12 114942027 114942027 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015335 exon6 c.G759A p.S253S . . . FBXW8 26259 broad.mit.edu 36 12 115850287 115850287 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153348 exon2 c.A395G p.D132G . . . TESC 54997 broad.mit.edu 36 12 115979001 115979001 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017899 exon3 c.G202A p.D68N . . . FBXO21 23014 broad.mit.edu 36 12 116111483 116111483 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015002 exon2 c.C307T p.R103W . . . NOS1 4842 broad.mit.edu 36 12 116142351 116142351 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000620 exon27 c.C4082T p.A1361V . . . NOS1 4842 broad.mit.edu 36 12 116156945 116156945 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000620 exon21 c.C3043T p.R1015W . . . NOS1 4842 broad.mit.edu 36 12 116182785 116182785 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000620 exon14 c.C2235A p.F745L . . . NOS1 4842 broad.mit.edu 36 12 116187513 116187513 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000620 exon12 c.C2127T p.F709F . . . NOS1 4842 broad.mit.edu 36 12 116207515 116207515 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000620 exon7 c.C1296T p.F432F . . . NOS1 4842 broad.mit.edu 36 12 116210384 116210384 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000620 exon5 c.C1005A p.I335I . . . KSR2 283455 broad.mit.edu 36 12 116398663 116398663 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173598 exon17 c.C2484A p.V828V . . . KSR2 283455 broad.mit.edu 36 12 116447225 116447225 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173598 exon14 c.G1947A p.G649G . . . KSR2 283455 broad.mit.edu 36 12 116589839 116589839 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_173598 exon5 c.A907C p.K303Q . . . RFC5 5985 broad.mit.edu 36 12 116941933 116941933 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181578 exon4 c.G181T p.E61X . . . CCDC60 160777 broad.mit.edu 36 12 118394214 118394214 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178499 exon3 c.G203A p.G68E . . . PRKAB1 5564 broad.mit.edu 36 12 118596633 118596633 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006253 exon4 c.G523A p.D175N . . . CIT 11113 broad.mit.edu 36 12 118657455 118657455 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007174 exon24 c.G2923A p.D975N . . . CCDC64 92558 broad.mit.edu 36 12 119003123 119003123 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207311 exon7 c.G1358A p.R453Q . . . SIRT4 23409 broad.mit.edu 36 12 119226007 119226007 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012240 exon2 c.G260A p.R87H . . . ETV6 2120 broad.mit.edu 36 12 11930131 11930131 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001987 exon7 c.G1157T p.R386I . . . RNF10 9921 broad.mit.edu 36 12 119497870 119497870 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014868 exon15 c.G2196T p.K732N . . . ACADS 35 broad.mit.edu 36 12 119649294 119649294 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000017 exon2 c.G129A p.Q43Q . . . OASL 8638 broad.mit.edu 36 12 119942981 119942981 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003733 exon6 c.C1311T p.F437F . . . OASL 8638 broad.mit.edu 36 12 119953698 119953698 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003733 exon3 c.G587T p.R196I . . . P2RX4 5025 broad.mit.edu 36 12 120144116 120144116 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002560 exon3 c.C300T p.F100F . . . P2RX4 5025 broad.mit.edu 36 12 120150741 120150741 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002560 exon6 c.G547T p.E183X . . . RNF34 80196 broad.mit.edu 36 12 120340059 120340059 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025126 exon3 c.G595A p.D199N . . . KDM2B 84678 broad.mit.edu 36 12 120365972 120365972 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032590 exon17 c.C2459T p.S820L . . . IQSEC3 440073 broad.mit.edu 36 12 120598 120598 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170738 exon5 c.C2039T p.P680L . . . TMEM120B 144404 broad.mit.edu 36 12 120683948 120683948 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080825 exon6 c.G472A p.E158K . . . HPD 3242 broad.mit.edu 36 12 120771344 120771344 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002150 exon9 c.G540T p.M180I . . . WDR66 144406 broad.mit.edu 36 12 120882953 120882953 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001178003 exon14 c.G2213A p.R738H . . . BCL7A 605 broad.mit.edu 36 12 120966265 120966265 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020993 exon4 c.C362T p.S121L . . . BCL7A 605 broad.mit.edu 36 12 120977274 120977274 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020993 exon5 c.C620T p.S207L . . . MLXIP 22877 broad.mit.edu 36 12 121184000 121184000 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014938 exon9 c.C1245T p.F415F . . . IL31 386653 broad.mit.edu 36 12 121224362 121224362 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001014336 exon2 c.G147A p.S49S . . . LRRC43 254050 broad.mit.edu 36 12 121235026 121235026 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098519 exon2 c.C158T p.S53L . . . BCL2L14 79370 broad.mit.edu 36 12 12123519 12123519 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_138723 exon2 c.A13G p.S5G . . . LRRC43 254050 broad.mit.edu 36 12 121251121 121251121 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098519 exon9 c.G1581T p.E527D . . . CLIP1 6249 broad.mit.edu 36 12 121360282 121360282 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198240 exon18 c.G3436A p.E1146K . . . ZCCHC8 55596 broad.mit.edu 36 12 121532035 121532035 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017612 exon10 c.C1005A p.L335L . . . ZCCHC8 55596 broad.mit.edu 36 12 121541020 121541020 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017612 exon4 c.G365T p.R122I . . . RSRC2 65117 broad.mit.edu 36 12 121565702 121565702 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023012 exon6 c.C628T p.P210S . . . KNTC1 9735 broad.mit.edu 36 12 121624824 121624824 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014708 exon27 c.G2326T p.E776X . . . KNTC1 9735 broad.mit.edu 36 12 121664253 121664253 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014708 exon55 c.G5869A p.E1957K . . . KNTC1 9735 broad.mit.edu 36 12 121673054 121673054 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014708 exon62 c.G6462A p.A2154A . . . GPR109A 338442 broad.mit.edu 36 12 121752796 121752796 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_177551 exon1 c.G988A p.E330K . . . LRP6 4040 broad.mit.edu 36 12 12208502 12208502 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002336 exon9 c.G2024A p.R675Q . . . LRP6 4040 broad.mit.edu 36 12 12208589 12208589 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002336 exon9 c.C1937A p.S646Y . . . MPHOSPH9 10198 broad.mit.edu 36 12 122211647 122211647 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022782 exon18 c.G2914T p.E972X . . . SBNO1 55206 broad.mit.edu 36 12 122374227 122374227 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018183 exon15 c.C2075T p.S692L . . . SBNO1 55206 broad.mit.edu 36 12 122381785 122381785 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018183 exon7 c.A997C p.I333L . . . LRP6 4040 broad.mit.edu 36 12 12247508 12247508 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002336 exon3 c.T543G p.I181M . . . TCTN2 79867 broad.mit.edu 36 12 122729772 122729772 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024809 exon5 c.C547T p.R183C . . . DNAH10 196385 broad.mit.edu 36 12 122822162 122822162 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon3 c.A177C p.E59D . . . DNAH10 196385 broad.mit.edu 36 12 122831799 122831799 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon6 c.G658A p.G220S . . . DNAH10 196385 broad.mit.edu 36 12 122847253 122847253 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon12 c.C1730A p.S577Y . . . DNAH10 196385 broad.mit.edu 36 12 122859317 122859317 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon18 c.C2654A p.S885Y . . . DNAH10 196385 broad.mit.edu 36 12 122863857 122863857 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon19 c.G2984A p.R995Q . . . DNAH10 196385 broad.mit.edu 36 12 122885925 122885925 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon27 c.G4445T p.R1482I . . . DNAH10 196385 broad.mit.edu 36 12 122891890 122891890 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon29 c.G4851T p.M1617I . . . DNAH10 196385 broad.mit.edu 36 12 122903837 122903837 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon35 c.C6069A p.S2023S . . . DNAH10 196385 broad.mit.edu 36 12 122915124 122915124 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon39 c.C6584T p.A2195V . . . DNAH10 196385 broad.mit.edu 36 12 122924110 122924110 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon45 c.G7484T p.R2495I . . . DNAH10 196385 broad.mit.edu 36 12 122928360 122928360 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon47 c.G7970A p.R2657Q . . . DNAH10 196385 broad.mit.edu 36 12 122930239 122930239 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon49 c.G8218A p.E2740K . . . DNAH10 196385 broad.mit.edu 36 12 122948370 122948370 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon54 c.G9027T p.Q3009H . . . DNAH10 196385 broad.mit.edu 36 12 122961162 122961162 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon58 c.A9770G p.K3257R . . . DNAH10 196385 broad.mit.edu 36 12 122967065 122967065 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207437 exon62 c.G10477T p.D3493Y . . . CCDC92 80212 broad.mit.edu 36 12 122988253 122988253 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025140 exon5 c.G301A p.E101K . . . ZNF664 144348 broad.mit.edu 36 12 123062696 123062696 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152437 exon6 c.C52A p.L18I . . . MANSC1 54682 broad.mit.edu 36 12 12374368 12374368 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018050 exon4 c.C1156A p.L386I . . . SCARB1 949 broad.mit.edu 36 12 123868194 123868194 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005505 exon2 c.G139A p.D47N . . . DHX37 57647 broad.mit.edu 36 12 124036677 124036677 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032656 exon2 c.C194T p.S65L . . . TMEM132B 114795 broad.mit.edu 36 12 124694777 124694777 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052907 exon6 c.G1625T p.R542I . . . DUSP16 80824 broad.mit.edu 36 12 12521663 12521663 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030640 exon7 c.G1369A p.E457K . . . GPR19 2842 broad.mit.edu 36 12 12705491 12705491 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006143 exon4 c.G1159T p.D387Y . . . GLT1D1 144423 broad.mit.edu 36 12 127939179 127939179 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144669 exon3 c.T260C p.V87A . . . GLT1D1 144423 broad.mit.edu 36 12 127997873 127997873 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144669 exon6 c.G457T p.E153X . . . TMEM132D 121256 broad.mit.edu 36 12 128125139 128125139 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133448 exon9 c.C2534A p.S845Y . . . TMEM132D 121256 broad.mit.edu 36 12 128750779 128750779 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133448 exon2 c.C497T p.P166L . . . TMEM132D 121256 broad.mit.edu 36 12 128750985 128750985 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133448 exon2 c.C291T p.Y97Y . . . FZD10 11211 broad.mit.edu 36 12 129213630 129213630 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007197 exon1 c.G190A p.A64T . . . FZD10 11211 broad.mit.edu 36 12 129214194 129214194 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007197 exon1 c.G754A p.D252N . . . FZD10 11211 broad.mit.edu 36 12 129214691 129214691 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007197 exon1 c.C1251T p.F417F . . . PIWIL1 9271 broad.mit.edu 36 12 129399884 129399884 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004764 exon8 c.A882C p.K294N . . . PIWIL1 9271 broad.mit.edu 36 12 129405427 129405427 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004764 exon11 c.G1213T p.D405Y . . . RIMBP2 23504 broad.mit.edu 36 12 129458227 129458227 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015347 exon16 c.C2922T p.V974V . . . RIMBP2 23504 broad.mit.edu 36 12 129472993 129472993 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015347 exon13 c.G2428A p.A810T . . . RAN 5901 broad.mit.edu 36 12 129925176 129925176 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006325 exon5 c.A380C p.K127T . . . GPRC5D 55507 broad.mit.edu 36 12 12994484 12994484 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018654 exon1 c.C102T p.I34I . . . HEBP1 50865 broad.mit.edu 36 12 13031463 13031463 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015987 exon3 c.G288T p.K96N . . . SFSWAP 6433 broad.mit.edu 36 12 130778836 130778836 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004592 exon7 c.C991T p.R331C . . . SFSWAP 6433 broad.mit.edu 36 12 130815083 130815083 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004592 exon12 c.C1850A p.S617Y . . . KIAA1467 57613 broad.mit.edu 36 12 13105936 13105936 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020853 exon4 c.G693T p.K231N . . . KIAA1467 57613 broad.mit.edu 36 12 13111461 13111461 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020853 exon7 c.G1106T p.R369I . . . KIAA1467 57613 broad.mit.edu 36 12 13112644 13112644 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020853 exon8 c.C1282T p.R428C . . . KIAA1467 57613 broad.mit.edu 36 12 13124170 13124170 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020853 exon12 c.G1823T p.R608I . . . P2RX2 22953 broad.mit.edu 36 12 131707165 131707165 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174873 exon7 c.G697A p.D233N . . . POLE 5426 broad.mit.edu 36 12 131728410 131728410 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006231 exon39 c.C5274T p.F1758F . . . POLE 5426 broad.mit.edu 36 12 131746139 131746139 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006231 exon26 c.C3090T p.F1030F . . . POLE 5426 broad.mit.edu 36 12 131759920 131759920 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006231 exon14 c.C1376T p.S459F . . . POLE 5426 broad.mit.edu 36 12 131766286 131766286 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006231 exon6 c.C448T p.R150X . . . ANKLE2 23141 broad.mit.edu 36 12 131829871 131829871 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015114 exon6 c.C1295T p.S432L . . . CHFR 55743 broad.mit.edu 36 12 131958976 131958976 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018223 exon4 c.A311G p.Y104C . . . Unknown 0 broad.mit.edu 36 12 132012919 132012919 + IGR SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183238 exon5 c.A1039G p.S347G . . . Unknown 0 broad.mit.edu 36 12 132013741 132013741 + IGR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183238 exon5 c.G217T p.D73Y . . . ZNF84 7637 broad.mit.edu 36 12 132144810 132144810 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001127372 exon5 c.G1436A p.R479K . . . ZNF84 7637 broad.mit.edu 36 12 132145257 132145257 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127372 exon5 c.A1883T p.E628V . . . ZNF140 7699 broad.mit.edu 36 12 132192195 132192195 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003440 exon5 c.G259T p.D87Y . . . GRIN2B 2904 broad.mit.edu 36 12 13606995 13606995 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000834 exon13 c.T4444A p.S1482T . . . GRIN2B 2904 broad.mit.edu 36 12 13910274 13910274 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000834 exon2 c.G136A p.D46N . . . ATF7IP 55729 broad.mit.edu 36 12 14480372 14480372 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018179 exon4 c.C1711T p.R571X . . . IQSEC3 440073 broad.mit.edu 36 12 144878 144878 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001170738 exon10 c.G2727A p.P909P . . . ATF7IP 55729 broad.mit.edu 36 12 14522535 14522535 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018179 exon12 c.C2959A p.H987N . . . PLBD1 79887 broad.mit.edu 36 12 14597413 14597413 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024829 exon2 c.G316A p.E106K . . . C12orf69 440087 broad.mit.edu 36 12 14850529 14850529 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013698 exon2 c.C353T p.S118L . . . ART4 420 broad.mit.edu 36 12 14884888 14884888 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021071 exon2 c.T611G p.F204C . . . EPS8 2059 broad.mit.edu 36 12 15713921 15713921 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004447 exon5 c.G310T p.D104Y . . . DERA 51071 broad.mit.edu 36 12 16080541 16080542 + Nonsense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_015954 exon8 c.859_860TA . . . . LMO3 55885 broad.mit.edu 36 12 16595486 16595486 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001395 exon4 c.C375T p.I125I . . . SLC6A12 6539 broad.mit.edu 36 12 174700 174700 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122847 exon13 c.C1381T p.L461L . . . ADIPOR2 79602 broad.mit.edu 36 12 1763468 1763468 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024551 exon7 c.G1000A p.E334K . . . SLC6A12 6539 broad.mit.edu 36 12 178257 178257 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001122847 exon8 c.G813T p.L271F . . . PIK3C2G 5288 broad.mit.edu 36 12 18326369 18326369 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004570 exon2 c.A87G p.Q29Q . . . PIK3C2G 5288 broad.mit.edu 36 12 18335172 18335172 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_004570 exon4 c.T878G p.F293C . . . PLCZ1 89869 broad.mit.edu 36 12 18744036 18744036 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033123 exon10 c.C1133A p.S378Y . . . CAPZA3 93661 broad.mit.edu 36 12 18782569 18782569 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033328 exon1 c.C100A p.L34I . . . DCP1B 196513 broad.mit.edu 36 12 1932299 1932299 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152640 exon7 c.C1068T p.F356F . . . SLCO1C1 53919 broad.mit.edu 36 12 20743796 20743796 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017435 exon2 c.G19T p.E7X . . . SLCO1B3 28234 broad.mit.edu 36 12 20906753 20906753 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019844 exon6 c.T622C p.Y208H . . . LST-3TM12 338821 broad.mit.edu 36 12 21063504 21063504 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009562 exon2 c.G141A p.P47P . . . SLCO1B1 10599 broad.mit.edu 36 12 21218784 21218784 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006446 exon4 c.T233C p.L78S . . . SLCO1B1 10599 broad.mit.edu 36 12 21220993 21220993 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006446 exon5 c.G376T p.E126X . . . SLCO1B1 10599 broad.mit.edu 36 12 21222893 21222893 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006446 exon6 c.G598A p.A200T . . . SLCO1B1 10599 broad.mit.edu 36 12 21261427 21261427 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006446 exon12 c.C1605A p.Y535X . . . RECQL 5965 broad.mit.edu 36 12 21522129 21522129 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032941 exon8 c.G742A p.A248T . . . GYS2 2998 broad.mit.edu 36 12 21603890 21603890 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021957 exon9 c.G1191T p.K397N . . . GYS2 2998 broad.mit.edu 36 12 21613136 21613136 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021957 exon5 c.C753T p.C251C . . . GYS2 2998 broad.mit.edu 36 12 21620234 21620234 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021957 exon3 c.G328T p.E110X . . . LDHB 3945 broad.mit.edu 36 12 21682568 21682568 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002300 exon6 c.G699T p.K233N . . . LDHB 3945 broad.mit.edu 36 12 21686245 21686245 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002300 exon5 c.C503A p.S168Y . . . KCNJ8 3764 broad.mit.edu 36 12 21810004 21810004 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004982 exon3 c.C1195T p.R399X . . . KCNJ8 3764 broad.mit.edu 36 12 21810224 21810224 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004982 exon3 c.G975A p.V325V . . . KCNJ8 3764 broad.mit.edu 36 12 21810728 21810728 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004982 exon3 c.G471A p.T157T . . . KCNJ8 3764 broad.mit.edu 36 12 21817766 21817766 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004982 exon2 c.G52A p.A18T . . . ABCC9 10060 broad.mit.edu 36 12 21845259 21845259 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020297 exon38 c.C4636T p.R1546C . . . ABCC9 10060 broad.mit.edu 36 12 21851655 21851655 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020297 exon36 c.G4341T p.E1447D . . . ABCC9 10060 broad.mit.edu 36 12 21854119 21854119 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020297 exon35 c.A4249C p.R1417R . . . ABCC9 10060 broad.mit.edu 36 12 21919873 21919873 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020297 exon15 c.G2074T p.D692Y . . . ABCC9 10060 broad.mit.edu 36 12 21970174 21970174 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020297 exon3 c.C375T p.I125I . . . CMAS 55907 broad.mit.edu 36 12 22099418 22099418 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018686 exon2 c.G329A p.R110Q . . . CMAS 55907 broad.mit.edu 36 12 22105513 22105513 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018686 exon6 c.G820A p.E274K . . . CMAS 55907 broad.mit.edu 36 12 22109349 22109349 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018686 exon8 c.T1142C p.L381S . . . KIAA0528 9847 broad.mit.edu 36 12 22534403 22534403 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014802 exon12 c.T1279G p.L427V . . . KIAA0528 9847 broad.mit.edu 36 12 22568732 22568732 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014802 exon6 c.G542A p.R181Q . . . SOX5 6660 broad.mit.edu 36 12 23607469 23607469 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152989 exon14 c.G1439T p.R480L . . . LRMP 4033 broad.mit.edu 36 12 25152213 25152213 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006152 exon21 c.C1452A p.I484I . . . CASC1 55259 broad.mit.edu 36 12 25188662 25188662 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001082972 exon9 c.C1080T p.V360V . . . CASC1 55259 broad.mit.edu 36 12 25199592 25199592 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001082972 exon5 c.G394A p.E132K . . . CASC1 55259 broad.mit.edu 36 12 25202710 25202710 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001082972 exon4 c.G335A p.R112Q . . . CACNA1C 775 broad.mit.edu 36 12 2562290 2562290 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001129842 exon15 c.G2145A p.G715G . . . CACNA1C 775 broad.mit.edu 36 12 2581315 2581315 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001129842 exon22 c.C2888A p.S963Y . . . SSPN 8082 broad.mit.edu 36 12 26275021 26275021 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135823 exon3 c.C168T p.L56L . . . ITPR2 3709 broad.mit.edu 36 12 26539430 26539430 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002223 exon38 c.C5104T p.R1702X . . . ITPR2 3709 broad.mit.edu 36 12 26639727 26639727 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002223 exon32 c.G4318T p.E1440X . . . ITPR2 3709 broad.mit.edu 36 12 26641136 26641136 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002223 exon31 c.C4201A p.L1401I . . . ITPR2 3709 broad.mit.edu 36 12 26666577 26666577 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002223 exon25 c.G3151A p.D1051N ITPR2,kidney,NS,Substitution - Missense,+1 . . ITPR2 3709 broad.mit.edu 36 12 26703323 26703323 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002223 exon16 c.C1876T p.R626W . . . C12orf11 55726 broad.mit.edu 36 12 26966878 26966878 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018164 exon8 c.C827A p.S276Y . . . FGFR1OP2 26127 broad.mit.edu 36 12 27004767 27004767 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171888 exon5 c.G449A p.R150Q . . . STK38L 23012 broad.mit.edu 36 12 27359288 27359288 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015000 exon8 c.A746C p.N249T . . . ARNTL2 56938 broad.mit.edu 36 12 27434393 27434393 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020183 exon9 c.C873A p.I291I . . . PPFIBP1 8496 broad.mit.edu 36 12 27721272 27721272 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003622 exon19 c.C1591T p.R531X . . . PPFIBP1 8496 broad.mit.edu 36 12 27733218 27733218 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001198915 exon24 c.C2059A p.L687I . . . ITFG2 55846 broad.mit.edu 36 12 2799631 2799631 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018463 exon5 c.G525T p.K175N . . . CCDC91 55297 broad.mit.edu 36 12 28351892 28351892 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018318 exon5 c.T519C p.F173F . . . FOXM1 2305 broad.mit.edu 36 12 2838864 2838864 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_202003 exon8 c.C1448A p.S483X . . . FOXM1 2305 broad.mit.edu 36 12 2851615 2851615 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_202003 exon3 c.C562T p.R188X . . . KDM5A 5927 broad.mit.edu 36 12 287096 287096 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042603 exon23 c.C3715T p.R1239W . . . FAR2 55711 broad.mit.edu 36 12 29361185 29361185 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018099 exon9 c.A1100G p.Y367C . . . OVCH1 341350 broad.mit.edu 36 12 29539515 29539515 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_183378 exon4 c.C424A p.L142M . . . TMTC1 83857 broad.mit.edu 36 12 29580486 29580486 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193451 exon11 c.T1708G p.L570V . . . TMTC1 83857 broad.mit.edu 36 12 29795996 29795996 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193451 exon5 c.C808A p.H270N . . . TMTC1 83857 broad.mit.edu 36 12 29802912 29802912 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193451 exon3 c.G546A p.S182S . . . KDM5A 5927 broad.mit.edu 36 12 300490 300490 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042603 exon18 c.G2473T p.E825X . . . IPO8 10526 broad.mit.edu 36 12 30718891 30718891 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006390 exon7 c.G793A p.A265T . . . CAPRIN2 65981 broad.mit.edu 36 12 30773323 30773323 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002259 exon8 c.A1308C p.A436A . . . CAPRIN2 65981 broad.mit.edu 36 12 30779230 30779230 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002259 exon4 c.G748T p.E250X . . . CAPRIN2 65981 broad.mit.edu 36 12 30797928 30797928 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002259 exon1 c.G37A p.E13K . . . DDX11 1663 broad.mit.edu 36 12 31139002 31139002 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004399 exon14 c.C1461T p.I487I . . . KDM5A 5927 broad.mit.edu 36 12 313702 313702 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042603 exon11 c.G1456A p.D486N . . . DENND5B 160518 broad.mit.edu 36 12 31468793 31468793 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144973 exon10 c.C2334T p.I778I . . . AMN1 196394 broad.mit.edu 36 12 31746123 31746123 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001113402 exon3 c.A257C p.K86T . . . H3F3C 440093 broad.mit.edu 36 12 31836250 31836250 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013699 exon1 c.C118T p.R40C . . . C12orf35 55196 broad.mit.edu 36 12 32026165 32026165 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018169 exon4 c.T1009G p.F337V . . . C12orf35 55196 broad.mit.edu 36 12 32028143 32028143 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018169 exon4 c.G2987A p.S996N . . . BICD1 636 broad.mit.edu 36 12 32260561 32260561 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003398 exon2 c.C327A p.I109I . . . TSPAN9 10867 broad.mit.edu 36 12 3261190 3261190 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168320 exon7 c.C594T p.F198F . . . FGD4 121512 broad.mit.edu 36 12 32626199 32626199 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139241 exon4 c.C131A p.A44D . . . YARS2 51067 broad.mit.edu 36 12 32799928 32799928 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040436 exon1 c.G148T p.D50Y . . . PKP2 5318 broad.mit.edu 36 12 32868328 32868328 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004572 exon8 c.C1724T p.A575V . . . KDM5A 5927 broad.mit.edu 36 12 335924 335924 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001042603 exon6 c.A713C p.K238T . . . PRMT8 56341 broad.mit.edu 36 12 3533080 3533080 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019854 exon4 c.C420T p.I140I . . . ALG10B 144245 broad.mit.edu 36 12 37000317 37000317 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013620 exon3 c.G457A p.E153K . . . ALG10B 144245 broad.mit.edu 36 12 37000692 37000692 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013620 exon3 c.G832A p.D278N . . . ALG10B 144245 broad.mit.edu 36 12 37000776 37000776 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001013620 exon3 c.C916A p.L306I . . . KIF21A 55605 broad.mit.edu 36 12 38002947 38002947 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173465 exon25 c.G3353A p.R1118Q . . . KIF21A 55605 broad.mit.edu 36 12 38012453 38012453 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173465 exon19 c.C2773T p.R925X . . . KIF21A 55605 broad.mit.edu 36 12 38031870 38031870 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001173465 exon11 c.G1649T p.R550I . . . KIF21A 55605 broad.mit.edu 36 12 38037499 38037499 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173465 exon9 c.G1223T p.R408I . . . PARP11 57097 broad.mit.edu 36 12 3809360 3809360 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020367 exon2 c.G104A p.G35D . . . C12orf40 283461 broad.mit.edu 36 12 38362831 38362831 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001031748 exon8 c.T838G p.F280V . . . C12orf40 283461 broad.mit.edu 36 12 38372148 38372148 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001031748 exon11 c.T1378G p.L460V . . . SLC2A13 114134 broad.mit.edu 36 12 38708465 38708465 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052885 exon3 c.G830T p.R277I . . . LRRK2 120892 broad.mit.edu 36 12 38931353 38931353 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198578 exon9 c.G1011T p.E337D . . . LRRK2 120892 broad.mit.edu 36 12 38933054 38933054 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198578 exon11 c.G1257A p.A419A . . . LRRK2 120892 broad.mit.edu 36 12 38973667 38973667 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198578 exon21 c.G2743T p.E915X . . . LRRK2 120892 broad.mit.edu 36 12 38986025 38986025 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198578 exon28 c.G3949T p.D1317Y . . . LRRK2 120892 broad.mit.edu 36 12 39003257 39003257 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198578 exon38 c.A5538C p.P1846P . . . CNTN1 1272 broad.mit.edu 36 12 39609928 39609928 + Missense_Mutation SNP G A A rs4408370 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175038 exon6 c.G527A p.R176Q . . . CNTN1 1272 broad.mit.edu 36 12 39613534 39613534 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175038 exon7 c.A675G p.T225T . . . CNTN1 1272 broad.mit.edu 36 12 39661093 39661093 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175038 exon15 c.G1887A p.Q629Q . . . PDZRN4 29951 broad.mit.edu 36 12 40252972 40252972 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164595 exon10 c.G2124A p.R708R . . . PDZRN4 29951 broad.mit.edu 36 12 40253568 40253568 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164595 exon10 c.G2720A p.R907Q . . . PDZRN4 29951 broad.mit.edu 36 12 40253742 40253742 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164595 exon10 c.G2894A p.R965Q . . . PRICKLE1 144165 broad.mit.edu 36 12 41146295 41146295 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144882 exon6 c.C743T p.A248V . . . PRICKLE1 144165 broad.mit.edu 36 12 41148784 41148784 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144882 exon5 c.G499A p.D167N . . . CCDC77 84318 broad.mit.edu 36 12 417805 417805 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130148 exon8 c.T769G p.F257V . . . ADAMTS20 80070 broad.mit.edu 36 12 42063721 42063721 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_025003 exon31 c.A4704G p.E1568E . . . ADAMTS20 80070 broad.mit.edu 36 12 42109787 42109787 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_025003 exon24 c.T3389C p.V1130A . . . CCDC77 84318 broad.mit.edu 36 12 421334 421334 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001130148 exon11 c.T1358G p.L453R . . . ADAMTS20 80070 broad.mit.edu 36 12 42134008 42134008 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025003 exon12 c.G1729A p.E577K . . . PUS7L 83448 broad.mit.edu 36 12 42426178 42426179 + Missense_Mutation DNP TT GC GC novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_001098615 exon4 c.1200_1201GC . . . . PUS7L 83448 broad.mit.edu 36 12 42434703 42434703 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098615 exon2 c.G613T p.E205X . . . IRAK4 51135 broad.mit.edu 36 12 42462379 42462379 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016123 exon9 c.C944A p.A315E . . . TWF1 5756 broad.mit.edu 36 12 42475724 42475724 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_002822 exon9 c.T1086C p.G362G . . . TWF1 5756 broad.mit.edu 36 12 42477061 42477061 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002822 exon8 c.G969T p.M323I . . . TWF1 5756 broad.mit.edu 36 12 42479546 42479546 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_002822 exon5 c.A507C p.K169N . . . NELL2 4753 broad.mit.edu 36 12 43200217 43200217 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145108 exon19 c.C2238T p.L746L . . . NELL2 4753 broad.mit.edu 36 12 43202169 43202169 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145108 exon18 c.C2056A p.L686I . . . NELL2 4753 broad.mit.edu 36 12 43203383 43203383 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145108 exon17 c.T1956G p.I652M . . . NELL2 4753 broad.mit.edu 36 12 43383820 43383820 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145108 exon12 c.G1274A p.R425Q . . . NELL2 4753 broad.mit.edu 36 12 43457315 43457315 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145108 exon6 c.C656T p.A219V . . . ANO6 196527 broad.mit.edu 36 12 44028338 44028338 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025356 exon5 c.C606A p.F202L . . . ANO6 196527 broad.mit.edu 36 12 44109277 44109277 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001025356 exon20 c.C2649A p.L883L . . . ARID2 196528 broad.mit.edu 36 12 44501507 44501507 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152641 exon6 c.G675A p.W225X . . . ARID2 196528 broad.mit.edu 36 12 44517553 44517553 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152641 exon10 c.G1126T p.E376X . . . ARID2 196528 broad.mit.edu 36 12 44529728 44529728 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152641 exon14 c.C1814A p.P605Q . . . ARID2 196528 broad.mit.edu 36 12 44531196 44531196 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152641 exon15 c.C3023A p.S1008Y . . . ARID2 196528 broad.mit.edu 36 12 44532318 44532318 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152641 exon15 c.C4145G p.S1382C . . . SRSF2IP 9169 broad.mit.edu 36 12 44605084 44605084 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004719 exon12 c.T3600C p.G1200G . . . SLC38A1 81539 broad.mit.edu 36 12 44869042 44869042 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077484 exon17 c.C1442T p.S481L . . . SLC38A1 81539 broad.mit.edu 36 12 44889110 44889110 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077484 exon6 c.G382T p.E128X . . . SLC38A1 81539 broad.mit.edu 36 12 44919754 44919754 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077484 exon3 c.G97A p.E33K . . . RAD51AP1 10635 broad.mit.edu 36 12 4525839 4525839 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006479 exon4 c.G313A p.D105N . . . SLC38A4 55089 broad.mit.edu 36 12 45455105 45455105 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018018 exon14 c.C1293A p.L431L . . . AMIGO2 347902 broad.mit.edu 36 12 45758147 45758147 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181847 exon2 c.C906T p.V302V . . . FAM113B 91523 broad.mit.edu 36 12 45915164 45915164 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138371 exon2 c.C51T p.F17F . . . DYRK4 8798 broad.mit.edu 36 12 4593163 4593163 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003845 exon13 c.T1546G p.L516V . . . AKAP3 10566 broad.mit.edu 36 12 4606582 4606582 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006422 exon4 c.G1747T p.E583X . . . AKAP3 10566 broad.mit.edu 36 12 4607823 4607823 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006422 exon4 c.A506C p.K169T . . . AKAP3 10566 broad.mit.edu 36 12 4607962 4607962 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006422 exon4 c.G367T p.E123X . . . AKAP3 10566 broad.mit.edu 36 12 4617562 4617562 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006422 exon3 c.C62T p.S21F . . . RPAP3 79657 broad.mit.edu 36 12 46349120 46349120 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146076 exon13 c.A1082C p.Q361P . . . RPAP3 79657 broad.mit.edu 36 12 46382866 46382866 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146075 exon2 c.G25A p.E9K . . . RAPGEF3 10411 broad.mit.edu 36 12 46420430 46420430 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098532 exon21 c.G2121T p.K707N . . . COL2A1 1280 broad.mit.edu 36 12 46657375 46657375 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033150 exon45 c.G3061T p.E1021X . . . COL2A1 1280 broad.mit.edu 36 12 46679982 46679982 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001844 exon2 c.C279T p.L93L . . . SENP1 29843 broad.mit.edu 36 12 46754424 46754424 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014554 exon8 c.C890A p.S297Y . . . PFKM 5213 broad.mit.edu 36 12 46787433 46787433 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001166686 exon2 c.G10T p.D4Y . . . PFKM 5213 broad.mit.edu 36 12 46815052 46815052 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166686 exon11 c.G1020T p.K340N . . . PFKM 5213 broad.mit.edu 36 12 46821802 46821802 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166686 exon18 c.G1638T p.K546N . . . OR10AD1 121275 broad.mit.edu 36 12 46882569 46882569 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004134 exon1 c.C774A p.F258L . . . GALNT8 26290 broad.mit.edu 36 12 4700130 4700130 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017417 exon1 c.A26G p.K9R . . . H1FNT 341567 broad.mit.edu 36 12 47009606 47009606 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181788 exon1 c.G265A p.E89K . . . CCDC65 85478 broad.mit.edu 36 12 47584512 47584512 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033124 exon1 c.C126A p.F42L . . . CCDC65 85478 broad.mit.edu 36 12 47597103 47597103 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033124 exon4 c.C554A p.S185Y . . . FKBP11 51303 broad.mit.edu 36 12 47603895 47603895 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143782 exon5 c.C325T p.R109X . . . WNT10B 7480 broad.mit.edu 36 12 47648361 47648361 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003394 exon4 c.G346T p.E116X . . . DHH 50846 broad.mit.edu 36 12 47774305 47774305 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021044 exon1 c.C258A p.I86I . . . TUBA1B 10376 broad.mit.edu 36 12 47809300 47809300 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006082 exon3 c.C367T p.R123C . . . KCNA6 3742 broad.mit.edu 36 12 4789727 4789727 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002235 exon1 c.G259A p.D87N . . . TUBA1C 84790 broad.mit.edu 36 12 47952579 47952579 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032704 exon4 c.G652A p.D218N . . . KCNH3 23416 broad.mit.edu 36 12 48234527 48234527 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012284 exon11 c.G2059A p.E687K . . . FAM186B 84070 broad.mit.edu 36 12 48279762 48279762 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032130 exon4 c.G1928A p.R643Q . . . FAM186B 84070 broad.mit.edu 36 12 48281133 48281133 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032130 exon4 c.C557A p.S186Y . . . PRPF40B 25766 broad.mit.edu 36 12 48317834 48317834 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031698 exon17 c.G1661A p.R554Q . . . FMNL3 91010 broad.mit.edu 36 12 48348545 48348545 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175736 exon2 c.G186T p.K62N . . . NCKAP5L 57701 broad.mit.edu 36 12 48476690 48476690 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037806 exon8 c.G1220T p.S407I . . . BCDIN3D 144233 broad.mit.edu 36 12 48518993 48518993 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181708 exon2 c.G307T p.E103X . . . SMARCD1 6602 broad.mit.edu 36 12 48766845 48766845 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139071 exon4 c.C448A p.L150I . . . SMARCD1 6602 broad.mit.edu 36 12 48767429 48767429 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139071 exon5 c.G548A p.R183Q . . . LIMA1 51474 broad.mit.edu 36 12 48857146 48857146 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001113546 exon11 c.C2251T p.R751W . . . LIMA1 51474 broad.mit.edu 36 12 48902162 48902162 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001113546 exon4 c.A539G p.N180S . . . LIMA1 51474 broad.mit.edu 36 12 48902470 48902470 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001113546 exon4 c.G231T p.E77D . . . DIP2B 57609 broad.mit.edu 36 12 49351443 49351443 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173602 exon5 c.G635A p.R212Q . . . DIP2B 57609 broad.mit.edu 36 12 49378438 49378438 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173602 exon18 c.C2109A p.S703R . . . DIP2B 57609 broad.mit.edu 36 12 49412520 49412520 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173602 exon32 c.C3915T p.I1305I . . . SLC11A2 4891 broad.mit.edu 36 12 49684851 49684851 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174125 exon5 c.G503A p.R168H . . . LETMD1 25875 broad.mit.edu 36 12 49729086 49729086 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015416 exon2 c.C125A p.S42Y . . . TFCP2 7024 broad.mit.edu 36 12 49783764 49783764 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173452 exon10 c.G1016A p.R339Q . . . BIN2 51411 broad.mit.edu 36 12 49977213 49977213 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016293 exon8 c.G605A p.R202H . . . GALNT6 11226 broad.mit.edu 36 12 50059778 50059778 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007210 exon3 c.G55A p.A19T . . . SLC4A8 9498 broad.mit.edu 36 12 50137422 50137422 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039960 exon6 c.G595T p.E199X . . . SLC4A8 9498 broad.mit.edu 36 12 50137505 50137505 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039960 exon6 c.G678T p.K226N . . . SLC4A8 9498 broad.mit.edu 36 12 50142476 50142476 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039960 exon10 c.G1217T p.R406I . . . KCNA5 3741 broad.mit.edu 36 12 5024291 5024291 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002234 exon1 c.C717A p.I239I . . . KCNA5 3741 broad.mit.edu 36 12 5025068 5025068 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002234 exon1 c.G1494A p.S498S . . . SCN8A 6334 broad.mit.edu 36 12 50442648 50442648 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014191 exon15 c.G2465A p.G822E . . . SCN8A 6334 broad.mit.edu 36 12 50486808 50486808 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014191 exon27 c.C5271T p.V1757V . . . KRT7 3855 broad.mit.edu 36 12 50923125 50923125 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005556 exon6 c.G921T p.E307D . . . KRT84 3890 broad.mit.edu 36 12 51062495 51062495 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033045 exon4 c.A905G p.Y302C . . . KRT84 3890 broad.mit.edu 36 12 51063819 51063819 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033045 exon2 c.C577A p.L193I . . . KRT84 3890 broad.mit.edu 36 12 51065318 51065318 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033045 exon1 c.T319G p.F107V . . . KRT75 9119 broad.mit.edu 36 12 51108729 51108729 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004693 exon6 c.C1101A p.I367I . . . KRT6A 3853 broad.mit.edu 36 12 51167900 51167900 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005554 exon9 c.C1566T p.G522G . . . KRT5 3852 broad.mit.edu 36 12 51199903 51199903 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000424 exon1 c.C445A p.L149I . . . KRT5 3852 broad.mit.edu 36 12 51200210 51200210 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000424 exon1 c.C138T p.F46F . . . KRT71 112802 broad.mit.edu 36 12 51227926 51227926 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033448 exon6 c.C1086T p.I362I . . . KRT74 121391 broad.mit.edu 36 12 51253376 51253376 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175053 exon1 c.C453T p.F151F . . . KRT73 319101 broad.mit.edu 36 12 51291315 51291315 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175068 exon6 c.C1050T p.I350I . . . KRT1 3848 broad.mit.edu 36 12 51358238 51358238 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006121 exon3 c.G843T p.E281D . . . KRT3 3850 broad.mit.edu 36 12 51475874 51475874 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_057088 exon1 c.G220T p.G74C . . . KRT79 338785 broad.mit.edu 36 12 51514133 51514133 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175834 exon1 c.G179A p.R60Q . . . KRT78 196374 broad.mit.edu 36 12 51524263 51524263 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173352 exon6 c.G928T p.E310X . . . EIF4B 1975 broad.mit.edu 36 12 51699046 51699046 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001417 exon3 c.C349T p.R117X . . . TENC1 23371 broad.mit.edu 36 12 51741233 51741233 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_170754 exon20 c.G3276A p.E1092E . . . CSAD 51380 broad.mit.edu 36 12 51838659 51838659 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015989 exon17 c.G1466A p.G489D . . . AAAS 8086 broad.mit.edu 36 12 51987748 51987748 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173466 exon15 c.G1334A p.R445Q . . . SP7 121340 broad.mit.edu 36 12 52008542 52008542 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152860 exon2 c.G951A p.W317X . . . MAP3K12 7786 broad.mit.edu 36 12 52164385 52164385 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193511 exon7 c.C1171T p.R391X . . . ATP5G2 517 broad.mit.edu 36 12 52349306 52349306 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005176 exon4 c.C375T p.I125I . . . HOXC13 3229 broad.mit.edu 36 12 52625285 52625285 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017410 exon2 c.C971T p.A324V . . . HOXC10 3226 broad.mit.edu 36 12 52665699 52665699 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017409 exon1 c.C389A p.S130Y . . . HOXC4 3221 broad.mit.edu 36 12 52734073 52734073 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014620 exon3 c.C100A p.P34T . . . SMUG1 23583 broad.mit.edu 36 12 52863882 52863882 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014311 exon3 c.G110A p.R37Q . . . GPR84 53831 broad.mit.edu 36 12 53042968 53042968 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020370 exon2 c.C935T p.S312L . . . GPR84 53831 broad.mit.edu 36 12 53043876 53043876 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020370 exon2 c.C27A p.F9L . . . ZNF385A 25946 broad.mit.edu 36 12 53055899 53055899 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015481 exon2 c.C194A p.S65Y . . . ITGA5 3678 broad.mit.edu 36 12 53081032 53081032 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002205 exon25 c.C2508T p.G836G . . . ITGA5 3678 broad.mit.edu 36 12 53091940 53091940 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002205 exon2 c.C294A p.L98L . . . NCKAP1L 3071 broad.mit.edu 36 12 53180617 53180617 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184976 exon3 c.G97A p.E33K . . . NCKAP1L 3071 broad.mit.edu 36 12 53188524 53188524 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184976 exon5 c.G298T p.D100Y . . . PDE1B 5153 broad.mit.edu 36 12 53253660 53253660 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000924 exon10 c.G964A p.E322K . . . KIAA0748 9840 broad.mit.edu 36 12 53643897 53643897 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098815 exon8 c.G551A p.R184Q . . . NEUROD4 58158 broad.mit.edu 36 12 53706718 53706718 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021191 exon2 c.G228T p.K76N . . . NEUROD4 58158 broad.mit.edu 36 12 53706865 53706865 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021191 exon2 c.G375A p.K125K . . . NEUROD4 58158 broad.mit.edu 36 12 53707302 53707302 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021191 exon2 c.C812A p.P271H . . . OR6C6 283365 broad.mit.edu 36 12 53975103 53975103 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005493 exon1 c.C181A p.L61I . . . OR6C6 283365 broad.mit.edu 36 12 53975243 53975243 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005493 exon1 c.G41A p.G14E . . . OR6C3 254786 broad.mit.edu 36 12 54012321 54012321 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_054104 exon1 c.G570A p.W190X . . . OR6C2 341416 broad.mit.edu 36 12 54132486 54132486 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_054105 exon1 c.C222A p.V74V . . . OR6C70 390327 broad.mit.edu 36 12 54149275 54149275 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005499 exon1 c.G915T p.K305N . . . OR6C4 341418 broad.mit.edu 36 12 54231484 54231484 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001005494 exon1 c.T207G p.I69M . . . OR6C4 341418 broad.mit.edu 36 12 54231775 54231775 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005494 exon1 c.C498T p.F166F . . . METTL7B 196410 broad.mit.edu 36 12 54364096 54364096 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152637 exon2 c.A731C p.K244T . . . ITGA7 3679 broad.mit.edu 36 12 54373348 54373348 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001144997 exon20 c.G2277A p.S759S . . . DNAJC14 85406 broad.mit.edu 36 12 54507911 54507911 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032364 exon2 c.G799T p.E267X . . . MMP19 4327 broad.mit.edu 36 12 54519733 54519733 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002429 exon5 c.G580A p.E194K . . . WIBG 84305 broad.mit.edu 36 12 54582272 54582272 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001143853 exon3 c.G263A p.R88H . . . ESYT1 23344 broad.mit.edu 36 12 54823348 54823348 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015292 exon29 c.C3189A p.S1063S . . . SLC39A5 283375 broad.mit.edu 36 12 54916741 54916741 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135195 exon8 c.C1151T p.T384M . . . SLC39A5 283375 broad.mit.edu 36 12 54917764 54917764 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135195 exon11 c.C1605T p.P535P . . . COQ10A 93058 broad.mit.edu 36 12 54950253 54950253 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_144576 exon5 c.T629C p.F210S . . . STAT2 6773 broad.mit.edu 36 12 55026642 55026642 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198332 exon21 c.C1883T p.T628M . . . SPRYD4 283377 broad.mit.edu 36 12 55148665 55148665 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207344 exon1 c.C23A p.S8Y . . . BAZ2A 11176 broad.mit.edu 36 12 55291959 55291959 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_013449 exon6 c.A1480C p.K494Q . . . ANO2 57101 broad.mit.edu 36 12 5555277 5555277 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020373 exon24 c.G2605A p.E869K . . . TAC3 6866 broad.mit.edu 36 12 55693414 55693414 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178054 exon4 c.G234A p.E78E . . . MYO1A 4640 broad.mit.edu 36 12 55711199 55711199 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005379 exon23 c.G2376T p.K792N . . . MYO1A 4640 broad.mit.edu 36 12 55716424 55716424 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005379 exon22 c.G2283T p.K761N . . . MYO1A 4640 broad.mit.edu 36 12 55727414 55727414 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005379 exon5 c.A370G p.K124E . . . TMEM194A 23306 broad.mit.edu 36 12 55740049 55740049 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015257 exon8 c.G996T p.E332D . . . TMEM194A 23306 broad.mit.edu 36 12 55752950 55752950 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015257 exon2 c.T140C p.V47A . . . ANO2 57101 broad.mit.edu 36 12 5579018 5579018 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020373 exon21 c.C2126T p.T709I . . . LRP1 4035 broad.mit.edu 36 12 55834607 55834607 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002332 exon8 c.C1083T p.L361L . . . LRP1 4035 broad.mit.edu 36 12 55871009 55871009 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002332 exon43 c.G7186A p.A2396T . . . LRP1 4035 broad.mit.edu 36 12 55872913 55872913 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002332 exon45 c.G7448A p.R2483Q . . . SHMT2 6472 broad.mit.edu 36 12 55912318 55912318 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166359 exon5 c.C507T p.F169F . . . ANO2 57101 broad.mit.edu 36 12 5592098 5592098 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020373 exon20 c.T2072C p.F691S . . . INHBC 3626 broad.mit.edu 36 12 56129800 56129800 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005538 exon2 c.G787A p.D263N . . . ARHGAP9 64333 broad.mit.edu 36 12 56159431 56159431 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032496 exon2 c.G26A p.S9N . . . MARS 4141 broad.mit.edu 36 12 56170355 56170355 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004990 exon6 c.G589A p.A197T . . . MARS 4141 broad.mit.edu 36 12 56196500 56196500 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004990 exon21 c.G2572T p.E858X . . . KIF5A 3798 broad.mit.edu 36 12 56244198 56244198 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004984 exon4 c.G332A p.R111Q . . . KIF5A 3798 broad.mit.edu 36 12 56244543 56244543 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004984 exon5 c.C430T p.R144C . . . KIF5A 3798 broad.mit.edu 36 12 56255709 56255709 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004984 exon17 c.C1925T p.S642L . . . KIF5A 3798 broad.mit.edu 36 12 56255801 56255801 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004984 exon17 c.G2017A p.A673T . . . DTX3 196403 broad.mit.edu 36 12 56287070 56287070 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178502 exon5 c.G157A p.E53K . . . SLC26A10 65012 broad.mit.edu 36 12 56300488 56300488 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133489 exon1 c.G218T p.R73I . . . SLC26A10 65012 broad.mit.edu 36 12 56302618 56302618 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133489 exon5 c.G718A p.A240T . . . OS9 10956 broad.mit.edu 36 12 56397952 56397952 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017958 exon10 c.C1078T p.R360X . . . AGAP2 116986 broad.mit.edu 36 12 56410575 56410575 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014770 exon12 c.G1390T p.D464Y . . . AGAP2 116986 broad.mit.edu 36 12 56414124 56414124 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014770 exon5 c.C493T p.R165C . . . MARCH9 92979 broad.mit.edu 36 12 56438185 56438185 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138396 exon3 c.G541A p.E181K . . . MARCH9 92979 broad.mit.edu 36 12 56438892 56438892 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138396 exon4 c.C986T p.A329V . . . TSFM 10102 broad.mit.edu 36 12 56463161 56463161 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001172695 exon2 c.C59A p.A20D . . . LRIG3 121227 broad.mit.edu 36 12 57554346 57554346 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_153377 exon18 c.A2873G p.D958G . . . LRIG3 121227 broad.mit.edu 36 12 57557681 57557681 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153377 exon15 c.G2304T p.E768D . . . LRIG3 121227 broad.mit.edu 36 12 57565935 57565935 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153377 exon10 c.C1189T p.R397W . . . ANO2 57101 broad.mit.edu 36 12 5900580 5900580 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020373 exon3 c.G409T p.G137C . . . VWF 7450 broad.mit.edu 36 12 5955674 5955674 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000552 exon43 c.G7301A p.R2434Q . . . VWF 7450 broad.mit.edu 36 12 5998795 5998795 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000552 exon28 c.G4050A p.A1350A . . . VWF 7450 broad.mit.edu 36 12 6005396 6005396 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000552 exon23 c.G3045A p.E1015E . . . VWF 7450 broad.mit.edu 36 12 6037283 6037283 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000552 exon14 c.G1722A p.P574P . . . VWF 7450 broad.mit.edu 36 12 6054883 6054883 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000552 exon7 c.G753T p.E251D . . . USP15 9958 broad.mit.edu 36 12 61035438 61035438 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006313 exon7 c.C743T p.S248L . . . USP15 9958 broad.mit.edu 36 12 61076356 61076356 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006313 exon19 c.C2498T p.S833L . . . MON2 23041 broad.mit.edu 36 12 61258530 61258530 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015026 exon31 c.G4553T p.R1518I . . . MON2 23041 broad.mit.edu 36 12 61260398 61260398 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015026 exon32 c.G4630A p.E1544K . . . PPM1H 57460 broad.mit.edu 36 12 61512292 61512292 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020700 exon2 c.G280T p.D94Y . . . AVPR1A 552 broad.mit.edu 36 12 61827689 61827689 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000706 exon2 c.C974T p.S325L . . . DPY19L2 283417 broad.mit.edu 36 12 62277926 62277926 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_173812 exon14 c.T1391C p.I464T . . . SRGAP1 57522 broad.mit.edu 36 12 62664016 62664016 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020762 exon2 c.A90G p.E30E . . . SRGAP1 57522 broad.mit.edu 36 12 62745170 62745170 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020762 exon8 c.C1029T p.C343C . . . SRGAP1 57522 broad.mit.edu 36 12 62775021 62775021 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020762 exon13 c.C1582T p.R528W . . . C12orf56 115749 broad.mit.edu 36 12 63033064 63033064 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001170633 exon2 c.G292T p.E98X . . . TBK1 29110 broad.mit.edu 36 12 63164397 63164397 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013254 exon9 c.C1040A p.S347Y . . . SCNN1A 6337 broad.mit.edu 36 12 6327594 6327594 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159576 exon12 c.C1893T p.L631L . . . GNS 2799 broad.mit.edu 36 12 63396831 63396831 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002076 exon14 c.G1616A p.R539H . . . GNS 2799 broad.mit.edu 36 12 63403072 63403072 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002076 exon11 c.C1289T p.S430F . . . GNS 2799 broad.mit.edu 36 12 63420689 63420689 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002076 exon7 c.C839A p.S280Y . . . LTBR 4055 broad.mit.edu 36 12 6364732 6364732 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002342 exon4 c.C398T p.A133V . . . LEMD3 23592 broad.mit.edu 36 12 63850635 63850635 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014319 exon1 c.G992T p.S331I . . . TAPBPL 55080 broad.mit.edu 36 12 6433135 6433135 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018009 exon3 c.G557A p.R186Q . . . IRAK3 11213 broad.mit.edu 36 12 64883841 64883841 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007199 exon2 c.C217T p.L73F . . . IRAK3 11213 broad.mit.edu 36 12 64908330 64908330 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142523 exon7 c.G617A p.R206Q . . . HELB 92797 broad.mit.edu 36 12 64990160 64990160 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033647 exon4 c.G1185T p.E395D . . . GRIP1 23426 broad.mit.edu 36 12 65221972 65221972 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001178074 exon3 c.C162T p.V54V . . . NOP2 4839 broad.mit.edu 36 12 6543152 6543152 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006170 exon7 c.G565T p.E189X . . . CHD4 1108 broad.mit.edu 36 12 6571458 6571458 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001273 exon20 c.G2975A p.R992Q . . . CAND1 55832 broad.mit.edu 36 12 65977898 65977898 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018448 exon6 c.A852G p.R284R . . . CAND1 55832 broad.mit.edu 36 12 65985297 65985297 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018448 exon10 c.G1582A p.V528I . . . ACRBP 84519 broad.mit.edu 36 12 6623622 6623622 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032489 exon5 c.G886T p.D296Y . . . ACRBP 84519 broad.mit.edu 36 12 6624703 6624703 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032489 exon4 c.C419A p.A140D . . . ACRBP 84519 broad.mit.edu 36 12 6625922 6625922 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032489 exon3 c.C345A p.V115V . . . NUP107 57122 broad.mit.edu 36 12 67390088 67390088 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020401 exon10 c.G838T p.E280X . . . YEATS4 8089 broad.mit.edu 36 12 68045886 68045886 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006530 exon4 c.C288T p.F96F . . . GPR162 27239 broad.mit.edu 36 12 6806264 6806264 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019858 exon5 c.C1401T p.D467D . . . FRS2 10818 broad.mit.edu 36 12 68251428 68251428 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001042555 exon8 c.G359T p.R120I . . . FRS2 10818 broad.mit.edu 36 12 68254445 68254445 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042555 exon10 c.C970T p.R324C . . . CCT2 10576 broad.mit.edu 36 12 68278026 68278026 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198842 exon13 c.A1102C p.M368L . . . USP5 8078 broad.mit.edu 36 12 6840422 6840422 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003481 exon12 c.C1389A p.F463L . . . RAB3IP 117177 broad.mit.edu 36 12 68495488 68495488 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024647 exon9 c.C760A p.L254I . . . KCNMB4 27345 broad.mit.edu 36 12 69110694 69110694 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014505 exon3 c.C627A p.F209L . . . ATN1 1822 broad.mit.edu 36 12 6920894 6920894 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007026 exon9 c.G3455A p.R1152H . . . PTPRB 5787 broad.mit.edu 36 12 69216114 69216114 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001109754 exon29 c.T6039G p.V2013V . . . PTPRB 5787 broad.mit.edu 36 12 69272372 69272372 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001109754 exon7 c.C1737A p.V579V . . . PTPRR 5801 broad.mit.edu 36 12 69336761 69336761 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130846 exon9 c.C1135T p.R379C . . . PTPRR 5801 broad.mit.edu 36 12 69342559 69342559 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130846 exon7 c.C856T p.R286X . . . PTPRR 5801 broad.mit.edu 36 12 69364185 69364185 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130846 exon6 c.G751T p.E251X . . . PTPRR 5801 broad.mit.edu 36 12 69378335 69378335 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130846 exon4 c.A521C p.N174T . . . TSPAN8 7103 broad.mit.edu 36 12 69819837 69819837 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004616 exon4 c.C182T p.A61V . . . ZFC3H1 196441 broad.mit.edu 36 12 70299985 70299985 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144982 exon26 c.C5037A p.F1679L . . . ZFC3H1 196441 broad.mit.edu 36 12 70300142 70300142 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144982 exon26 c.C4880A p.S1627Y . . . ZFC3H1 196441 broad.mit.edu 36 12 70313452 70313452 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144982 exon13 c.G2544T p.K848N . . . ZFC3H1 196441 broad.mit.edu 36 12 70314794 70314794 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144982 exon11 c.G2317T p.E773X . . . THAP2 83591 broad.mit.edu 36 12 70354383 70354383 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031435 exon2 c.C205T p.R69X . . . THAP2 83591 broad.mit.edu 36 12 70357120 70357120 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031435 exon3 c.C652A p.L218I . . . C1S 716 broad.mit.edu 36 12 7044132 7044132 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201442 exon8 c.G921A p.A307A . . . C1S 716 broad.mit.edu 36 12 7044611 7044611 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201442 exon9 c.T995C p.V332A . . . TBC1D15 64786 broad.mit.edu 36 12 70576803 70576803 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001146214 exon10 c.G1088T p.R363I . . . C1R 715 broad.mit.edu 36 12 7058534 7058534 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001733 exon8 c.G1369A p.A457T . . . TBC1D15 64786 broad.mit.edu 36 12 70601448 70601448 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146214 exon17 c.G1774A p.E592K . . . TPH2 121278 broad.mit.edu 36 12 70619109 70619109 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173353 exon1 c.G76A p.E26K . . . TPH2 121278 broad.mit.edu 36 12 70711407 70711407 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173353 exon10 c.G1267T p.E423X . . . TRHDE 29953 broad.mit.edu 36 12 70953540 70953540 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013381 exon1 c.G715A p.A239T . . . TRHDE 29953 broad.mit.edu 36 12 70966901 70966901 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013381 exon2 c.C953T p.T318M . . . TRHDE 29953 broad.mit.edu 36 12 71058046 71058046 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013381 exon3 c.G1058A p.R353Q . . . CLSTN3 9746 broad.mit.edu 36 12 7177603 7177603 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014718 exon3 c.G355A p.D119N . . . CLSTN3 9746 broad.mit.edu 36 12 7180149 7180149 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014718 exon6 c.G823T p.E275X . . . ACSM4 341392 broad.mit.edu 36 12 7350457 7350457 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001080454 exon2 c.A263C p.K88T . . . ACSM4 341392 broad.mit.edu 36 12 7366284 7366284 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001080454 exon7 c.T1005C p.Y335Y . . . ACSM4 341392 broad.mit.edu 36 12 7370892 7370892 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080454 exon12 c.G1590A p.E530E . . . KCNC2 3747 broad.mit.edu 36 12 73730926 73730926 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139137 exon3 c.C1126T p.R376X . . . KCNC2 3747 broad.mit.edu 36 12 73731112 73731112 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139137 exon3 c.C940A p.L314I . . . KCNC2 3747 broad.mit.edu 36 12 73887523 73887523 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139137 exon2 c.G508A p.E170K . . . CD163L1 283316 broad.mit.edu 36 12 7401292 7401292 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174941 exon19 c.T4337G p.L1446R . . . KRR1 11103 broad.mit.edu 36 12 74184091 74184091 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007043 exon7 c.G691T p.D231Y . . . CD163L1 283316 broad.mit.edu 36 12 7419207 7419207 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174941 exon11 c.C2938T p.Q980X . . . CD163L1 283316 broad.mit.edu 36 12 7450549 7450549 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174941 exon5 c.C933T p.F311F . . . PHLDA1 22822 broad.mit.edu 36 12 74711001 74711001 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007350 exon1 c.A788G p.D263G . . . E2F7 144455 broad.mit.edu 36 12 75951880 75951880 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203394 exon8 c.C1197A p.V399V . . . E2F7 144455 broad.mit.edu 36 12 75963971 75963971 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203394 exon5 c.C807A p.F269L . . . NAV3 89795 broad.mit.edu 36 12 76924649 76924649 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon8 c.G1200A p.P400P . . . NAV3 89795 broad.mit.edu 36 12 76924905 76924905 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon8 c.G1456T p.E486X . . . NAV3 89795 broad.mit.edu 36 12 77035955 77035955 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon14 c.G2787T p.E929D . . . NAV3 89795 broad.mit.edu 36 12 77086721 77086721 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon24 c.C4925T p.S1642F . . . NAV3 89795 broad.mit.edu 36 12 77097443 77097443 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon28 c.C5301T p.I1767I . . . NAV3 89795 broad.mit.edu 36 12 77106558 77106558 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon32 c.T5859C p.G1953G . . . NAV3 89795 broad.mit.edu 36 12 77115239 77115239 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon34 c.C6307A p.L2103I . . . NAV3 89795 broad.mit.edu 36 12 77116532 77116532 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon35 c.A6397T p.T2133S . . . NAV3 89795 broad.mit.edu 36 12 77122963 77122963 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014903 exon38 c.G6886T p.D2296Y . . . GDF3 9573 broad.mit.edu 36 12 7733788 7733788 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020634 exon2 c.C1048A p.L350I . . . CLEC4C 170482 broad.mit.edu 36 12 7785309 7785309 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203503 exon3 c.C117T p.C39C . . . PAWR 5074 broad.mit.edu 36 12 78514525 78514525 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002583 exon5 c.G728A p.R243Q . . . SLC2A14 144195 broad.mit.edu 36 12 7861795 7861795 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153449 exon11 c.G1243A p.E415K . . . SLC2A14 144195 broad.mit.edu 36 12 7863440 7863440 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153449 exon10 c.C1045A p.L349M . . . Unknown 0 broad.mit.edu 36 12 79254026 79254026 + IGR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173591 exon38 c.C4548A p.I1516I . . . Unknown 0 broad.mit.edu 36 12 79270275 79270275 + IGR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173591 exon44 c.G5308A p.A1770T . . . MYF6 4618 broad.mit.edu 36 12 79626488 79626488 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002469 exon2 c.G574A p.D192N . . . PPFIA2 8499 broad.mit.edu 36 12 80212819 80212819 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003625 exon24 c.C2851T p.R951C . . . PPFIA2 8499 broad.mit.edu 36 12 80257105 80257105 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003625 exon21 c.C2533T p.R845X . . . PPFIA2 8499 broad.mit.edu 36 12 80594720 80594720 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003625 exon4 c.C284A p.S95Y . . . C3AR1 719 broad.mit.edu 36 12 8103246 8103246 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004054 exon2 c.A803C p.K268T . . . C3AR1 719 broad.mit.edu 36 12 8103574 8103574 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004054 exon2 c.G475A p.V159M . . . C12orf26 84190 broad.mit.edu 36 12 81320947 81320947 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032230 exon5 c.C1186T p.R396X . . . C12orf26 84190 broad.mit.edu 36 12 81374658 81374658 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032230 exon9 c.T1500G p.I500M . . . C12orf26 84190 broad.mit.edu 36 12 81395235 81395235 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032230 exon11 c.G1692T p.L564L . . . TMTC2 160335 broad.mit.edu 36 12 81948716 81948716 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152588 exon9 c.G2079T p.K693N . . . TMTC2 160335 broad.mit.edu 36 12 82050248 82050248 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152588 exon12 c.C2460T p.R820R . . . ZNF705A 440077 broad.mit.edu 36 12 8220905 8220905 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004328 exon5 c.C362T p.S121L . . . SLC6A15 55117 broad.mit.edu 36 12 83790611 83790611 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182767 exon8 c.A1203C p.E401D . . . SLC6A15 55117 broad.mit.edu 36 12 83790684 83790684 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_182767 exon8 c.A1130C p.K377T . . . TSPAN19 144448 broad.mit.edu 36 12 83947830 83947830 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001100917 exon2 c.T26G p.I9S . . . LRRIQ1 84125 broad.mit.edu 36 12 84016809 84016809 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032165 exon13 c.G3115T p.E1039X . . . LRRIQ1 84125 broad.mit.edu 36 12 84042386 84042386 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032165 exon17 c.C3965A p.S1322Y . . . ALX1 8092 broad.mit.edu 36 12 84201736 84201736 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006982 exon2 c.T482C p.V161A . . . RASSF9 9182 broad.mit.edu 36 12 84723717 84723717 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005447 exon2 c.C202T p.R68X . . . NTS 4922 broad.mit.edu 36 12 84800267 84800267 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006183 exon4 c.G496T p.D166Y . . . WNK1 65125 broad.mit.edu 36 12 848002 848002 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001184985 exon9 c.C2849A p.S950Y . . . MGAT4C 25834 broad.mit.edu 36 12 84897809 84897809 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_013244 exon7 c.T826G p.L276V . . . MGAT4C 25834 broad.mit.edu 36 12 84907394 84907394 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013244 exon5 c.G62T p.R21I . . . CLEC4E 26253 broad.mit.edu 36 12 8579959 8579959 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014358 exon5 c.C482A p.S161Y . . . C12orf29 91298 broad.mit.edu 36 12 86963660 86963660 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009894 exon5 c.G592T p.G198X . . . CEP290 80184 broad.mit.edu 36 12 86989260 86989260 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025114 exon43 c.G5953T p.E1985X . . . CEP290 80184 broad.mit.edu 36 12 86989767 86989767 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025114 exon42 c.G5777A p.R1926Q . . . CEP290 80184 broad.mit.edu 36 12 87029752 87029752 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025114 exon21 c.G2067T p.K689N . . . CEP290 80184 broad.mit.edu 36 12 87036460 87036460 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025114 exon17 c.G1642T p.E548X . . . CEP290 80184 broad.mit.edu 36 12 87038146 87038146 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025114 exon15 c.G1398T p.K466N . . . TMTC3 160418 broad.mit.edu 36 12 87071244 87071244 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181783 exon3 c.C235T p.R79C . . . TMTC3 160418 broad.mit.edu 36 12 87110564 87110564 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181783 exon13 c.C1759A p.L587I . . . TMTC3 160418 broad.mit.edu 36 12 87112784 87112784 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181783 exon14 c.C1972A p.L658I . . . KITLG 4254 broad.mit.edu 36 12 87436686 87436686 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003994 exon4 c.C282A p.G94G . . . RIMKLB 57494 broad.mit.edu 36 12 8793727 8793727 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020734 exon4 c.C178A p.L60M . . . RIMKLB 57494 broad.mit.edu 36 12 8793885 8793885 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020734 exon4 c.C336T p.C112C . . . POC1B 282809 broad.mit.edu 36 12 88443082 88443082 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199781 exon2 c.G46T p.G16C . . . ATP2B1 490 broad.mit.edu 36 12 88537946 88537946 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001323 exon10 c.G1790A p.R597Q . . . ATP2B1 490 broad.mit.edu 36 12 88573608 88573608 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001323 exon1 c.T187G p.L63V . . . A2ML1 144568 broad.mit.edu 36 12 8867183 8867183 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_144670 exon2 c.A201C p.E67D . . . A2ML1 144568 broad.mit.edu 36 12 8887026 8887026 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_144670 exon12 c.T1278C p.Y426Y . . . A2ML1 144568 broad.mit.edu 36 12 8892654 8892654 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144670 exon16 c.G1905A p.V635V . . . A2ML1 144568 broad.mit.edu 36 12 8898675 8898675 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144670 exon22 c.C2745T p.S915S . . . A2ML1 144568 broad.mit.edu 36 12 8907801 8907801 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144670 exon29 c.C3647T p.A1216V . . . C12orf12 196477 broad.mit.edu 36 12 89871604 89871604 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152638 exon1 c.G1047T p.E349D . . . EPYC 1833 broad.mit.edu 36 12 89882210 89882210 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004950 exon7 c.G823A p.E275K . . . EPYC 1833 broad.mit.edu 36 12 89887952 89887952 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004950 exon6 c.G798T p.Q266H . . . KERA 11081 broad.mit.edu 36 12 89973354 89973354 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007035 exon2 c.G836A p.R279Q . . . KERA 11081 broad.mit.edu 36 12 89973970 89973970 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007035 exon2 c.T220G p.W74G . . . LUM 4060 broad.mit.edu 36 12 90026170 90026170 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002345 exon2 c.G718A p.E240K . . . A2M 2 broad.mit.edu 36 12 9123628 9123628 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000014 exon24 c.C2905T p.P969S . . . RAD52 5893 broad.mit.edu 36 12 912453 912453 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_134424 exon2 c.A33G p.G11G . . . A2M 2 broad.mit.edu 36 12 9134297 9134297 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000014 exon20 c.G2518T p.E840X . . . PLEKHG7 440107 broad.mit.edu 36 12 91682041 91682041 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004330 exon10 c.G874A p.D292N . . . EEA1 8411 broad.mit.edu 36 12 91737327 91737327 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003566 exon14 c.T1616C p.I539T . . . EEA1 8411 broad.mit.edu 36 12 91750588 91750588 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003566 exon11 c.G1085T p.R362I . . . PZP 5858 broad.mit.edu 36 12 9197131 9197131 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002864 exon30 c.G3850A p.V1284I . . . PZP 5858 broad.mit.edu 36 12 9209944 9209944 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002864 exon18 c.G2229T p.E743D . . . PZP 5858 broad.mit.edu 36 12 9238054 9238054 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002864 exon11 c.C1140A p.F380L . . . PZP 5858 broad.mit.edu 36 12 9245191 9245191 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002864 exon5 c.A500C p.E167A . . . SOCS2 8835 broad.mit.edu 36 12 92493068 92493068 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003877 exon3 c.A579C p.E193D . . . CRADD 8738 broad.mit.edu 36 12 92596933 92596933 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003805 exon2 c.G252A p.E84E . . . PLXNC1 10154 broad.mit.edu 36 12 93104326 93104326 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005761 exon4 c.C1385T p.S462L . . . PLXNC1 10154 broad.mit.edu 36 12 93197391 93197391 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005761 exon22 c.G3610A p.V1204I . . . PLXNC1 10154 broad.mit.edu 36 12 93212419 93212419 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005761 exon24 c.C3906A p.V1302V . . . CCDC41 51134 broad.mit.edu 36 12 93285848 93285848 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_016122 exon11 c.T1196C p.L399S . . . CCDC41 51134 broad.mit.edu 36 12 93329648 93329648 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016122 exon4 c.G280T p.E94X . . . TMCC3 57458 broad.mit.edu 36 12 93496314 93496314 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020698 exon3 c.C1118T p.S373L . . . NR2C1 7181 broad.mit.edu 36 12 93958491 93958491 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127362 exon10 c.C1145T p.S382F . . . NR2C1 7181 broad.mit.edu 36 12 93967001 93967001 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127362 exon9 c.C1105T p.L369F . . . FGD6 55785 broad.mit.edu 36 12 94012591 94012591 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018351 exon15 c.G3508T p.E1170X . . . FGD6 55785 broad.mit.edu 36 12 94127111 94127111 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018351 exon2 c.G2080T p.E694X . . . FGD6 55785 broad.mit.edu 36 12 94127717 94127717 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018351 exon2 c.C1474A p.L492I . . . FGD6 55785 broad.mit.edu 36 12 94128229 94128229 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018351 exon2 c.G962A p.R321Q . . . VEZT 55591 broad.mit.edu 36 12 94218270 94218270 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017599 exon12 c.C2030A p.S677Y . . . METAP2 10988 broad.mit.edu 36 12 94394062 94394062 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006838 exon2 c.A236C p.K79T . . . USP44 84101 broad.mit.edu 36 12 94451868 94451868 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042403 exon2 c.G296A p.R99Q . . . NTN4 59277 broad.mit.edu 36 12 94628501 94628501 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021229 exon5 c.C1029T p.F343F . . . NTN4 59277 broad.mit.edu 36 12 94705258 94705258 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021229 exon2 c.G175A p.E59K . . . HAL 3034 broad.mit.edu 36 12 94898571 94898571 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002108 exon17 c.C1413T p.I471I . . . HAL 3034 broad.mit.edu 36 12 94908416 94908416 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002108 exon10 c.G741T p.E247D . . . NEDD1 121441 broad.mit.edu 36 12 95853084 95853084 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152905 exon7 c.G689T p.R230I . . . NEDD1 121441 broad.mit.edu 36 12 95863664 95863664 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152905 exon14 c.G1717A p.D573N . . . KLRB1 3820 broad.mit.edu 36 12 9639178 9639178 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002258 exon6 c.G637T p.E213X . . . KLRB1 3820 broad.mit.edu 36 12 9651621 9651621 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002258 exon1 c.C82T p.R28W . . . TMPO 7112 broad.mit.edu 36 12 97449744 97449744 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001032283 exon3 c.G562T p.E188X . . . TMPO 7112 broad.mit.edu 36 12 97451589 97451589 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003276 exon4 c.G1423T p.E475X . . . TMPO 7112 broad.mit.edu 36 12 97464286 97464286 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001032283 exon8 c.G1009T p.E337X . . . SLC25A3 5250 broad.mit.edu 36 12 97519311 97519311 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002635 exon8 c.G960T p.M320I . . . IKBIP 121457 broad.mit.edu 36 12 97531963 97531963 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201612 exon3 c.C584A p.S195Y . . . ANKS1B 56899 broad.mit.edu 36 12 97669390 97669390 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181670 exon12 c.C1296T p.F432F . . . ANKS1B 56899 broad.mit.edu 36 12 98693569 98693569 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152788 exon7 c.G849A p.E283E . . . KLRF1 51348 broad.mit.edu 36 12 9876208 9876208 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_016523 exon2 c.A115C p.I39L . . . ACTR6 64431 broad.mit.edu 36 12 99128116 99128116 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022496 exon5 c.C514T p.R172W . . . SCYL2 55681 broad.mit.edu 36 12 99200887 99200887 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017988 exon2 c.C8A p.S3Y . . . SLC17A8 246213 broad.mit.edu 36 12 99321953 99321953 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139319 exon9 c.C1060A p.L354I . . . SLC17A8 246213 broad.mit.edu 36 12 99338035 99338035 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139319 exon12 c.G1737T p.Q579H . . . NR1H4 9971 broad.mit.edu 36 12 99458719 99458719 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005123 exon9 c.G1058A p.R353Q NR1H4,lung,NS,Substitution - Missense,0 . . OR4F15 390649 broad.mit.edu 36 15 100176006 100176006 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001001674 exon1 c.T94G p.L32V . . . OR4F15 390649 broad.mit.edu 36 15 100176239 100176239 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001674 exon1 c.C327A p.G109G . . . POTEB 339010 broad.mit.edu 36 15 19305343 19305343 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207355 exon11 c.G1675T p.E559X . . . POTEB 339010 broad.mit.edu 36 15 19307207 19307207 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_207355 exon10 c.A1493G p.Q498R . . . POTEB 339010 broad.mit.edu 36 15 19316973 19316973 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207355 exon8 c.G1232A p.C411Y . . . POTEB 339010 broad.mit.edu 36 15 19328107 19328107 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207355 exon4 c.G838A p.V280I . . . POTEB 339010 broad.mit.edu 36 15 19331019 19331019 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207355 exon3 c.C741A p.I247I . . . OR4M2 390538 broad.mit.edu 36 15 19870033 19870033 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004719 exon1 c.C94A p.L32I . . . OR4M2 390538 broad.mit.edu 36 15 19870443 19870443 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004719 exon1 c.C504T p.F168F . . . OR4N4 283694 broad.mit.edu 36 15 19884651 19884651 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001005241 exon1 c.C815A p.S272Y . . . TUBGCP5 114791 broad.mit.edu 36 15 20400486 20400486 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052903 exon10 c.C1092A p.F364L . . . TUBGCP5 114791 broad.mit.edu 36 15 20420320 20420320 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052903 exon20 c.C2751T p.V917V . . . CYFIP1 23191 broad.mit.edu 36 15 20515289 20515289 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014608 exon21 c.G2362A p.E788K . . . MKRN3 7681 broad.mit.edu 36 15 21362213 21362213 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005664 exon1 c.C191T p.P64L . . . NDN 4692 broad.mit.edu 36 15 21482774 21482774 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002487 exon1 c.C684T p.F228F . . . NDN 4692 broad.mit.edu 36 15 21483110 21483110 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002487 exon1 c.G348T p.K116N . . . C15orf2 23742 broad.mit.edu 36 15 22472302 22472302 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018958 exon1 c.C195T p.F65F . . . C15orf2 23742 broad.mit.edu 36 15 22472943 22472943 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018958 exon1 c.A836G p.E279G . . . C15orf2 23742 broad.mit.edu 36 15 22473031 22473031 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018958 exon1 c.C924A p.F308L . . . C15orf2 23742 broad.mit.edu 36 15 22474423 22474423 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018958 exon1 c.C2316A p.P772P . . . C15orf2 23742 broad.mit.edu 36 15 22474853 22474853 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018958 exon1 c.C2746A p.L916M . . . UBE3A 7337 broad.mit.edu 36 15 23150655 23150655 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_130839 exon11 c.C2292A p.F764L . . . UBE3A 7337 broad.mit.edu 36 15 23152954 23152954 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_130839 exon8 c.C1936T p.R646C . . . UBE3A 7337 broad.mit.edu 36 15 23166906 23166906 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_130839 exon6 c.G1508T p.R503I . . . UBE3A 7337 broad.mit.edu 36 15 23167007 23167007 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_130839 exon6 c.G1407T p.E469D . . . UBE3A 7337 broad.mit.edu 36 15 23167347 23167347 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_130839 exon6 c.G1067A p.R356Q . . . ATP10A 57194 broad.mit.edu 36 15 23491306 23491306 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024490 exon14 c.G2841T p.K947N . . . ATP10A 57194 broad.mit.edu 36 15 23513033 23513033 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024490 exon9 c.C1713A p.F571L . . . ATP10A 57194 broad.mit.edu 36 15 23577265 23577265 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024490 exon2 c.G648A p.S216S . . . GABRB3 2562 broad.mit.edu 36 15 24344050 24344050 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021912 exon9 c.C1405T p.L469L . . . GABRB3 2562 broad.mit.edu 36 15 24344125 24344125 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021912 exon9 c.G1330A p.D444N . . . GABRB3 2562 broad.mit.edu 36 15 24417735 24417735 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021912 exon4 c.G280T p.D94Y . . . GABRA5 2558 broad.mit.edu 36 15 24677140 24677140 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001165037 exon4 c.G141A p.T47T . . . GABRA5 2558 broad.mit.edu 36 15 24679449 24679449 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001165037 exon5 c.C252T p.F84F . . . GABRA5 2558 broad.mit.edu 36 15 24775967 24775967 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001165037 exon11 c.G1230T p.E410D . . . OCA2 4948 broad.mit.edu 36 15 25790639 25790639 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000275 exon20 c.G2104T p.E702X . . . HERC2 8924 broad.mit.edu 36 15 26048994 26048995 + Nonsense_Mutation DNP GA AG AG novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_004667 exon83 c.12711_12712CT . . . . HERC2 8924 broad.mit.edu 36 15 26094307 26094307 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004667 exon64 c.C9777T p.I3259I . . . HERC2 8924 broad.mit.edu 36 15 26134407 26134407 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004667 exon39 c.C6165T p.V2055V . . . HERC2 8924 broad.mit.edu 36 15 26137407 26137407 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004667 exon38 c.G5851A p.E1951K . . . HERC2 8924 broad.mit.edu 36 15 26140774 26140774 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004667 exon36 c.G5647A p.D1883N . . . HERC2 8924 broad.mit.edu 36 15 26188070 26188070 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004667 exon11 c.G1365A p.Q455Q . . . HERC2 8924 broad.mit.edu 36 15 26191730 26191730 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004667 exon8 c.G816A p.T272T . . . APBA2 321 broad.mit.edu 36 15 27133722 27133722 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005503 exon3 c.G343T p.D115Y . . . APBA2 321 broad.mit.edu 36 15 27173807 27173807 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005503 exon7 c.C1250T p.A417V . . . TJP1 7082 broad.mit.edu 36 15 27788211 27788211 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175610 exon24 c.C4454A p.S1485X . . . TJP1 7082 broad.mit.edu 36 15 27812130 27812130 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175610 exon14 c.G1918T p.E640X . . . TJP1 7082 broad.mit.edu 36 15 27845882 27845882 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175610 exon5 c.G468A p.P156P . . . ARHGAP11B 89839 broad.mit.edu 36 15 28710218 28710218 + Silent SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001039841 exon2 c.T150A p.P50P . . . FAN1 22909 broad.mit.edu 36 15 28984446 28984446 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001146095 exon2 c.T288C p.D96D . . . TRPM1 4308 broad.mit.edu 36 15 29112221 29112221 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_002420 exon21 c.A2849C p.K950T . . . OTUD7A 161725 broad.mit.edu 36 15 29583304 29583304 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130901 exon7 c.C882A p.N294K . . . CHRNA7 1139 broad.mit.edu 36 15 30191374 30191374 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190455 exon4 c.A419G p.D140G . . . ARHGAP11A 9824 broad.mit.edu 36 15 30705036 30705036 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199357 exon6 c.C772A p.L258I . . . ARHGAP11A 9824 broad.mit.edu 36 15 30712479 30712479 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199357 exon9 c.C1113T p.I371I . . . GREM1 26585 broad.mit.edu 36 15 30810530 30810530 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001191322 exon3 c.G137A p.R46H . . . FMN1 342184 broad.mit.edu 36 15 31146047 31146047 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001103184 exon1 c.G1331A p.R444Q . . . RYR3 6263 broad.mit.edu 36 15 31703396 31703396 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon20 c.G2454T p.K818N . . . RYR3 6263 broad.mit.edu 36 15 31741831 31741831 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon35 c.G4808A p.R1603Q . . . RYR3 6263 broad.mit.edu 36 15 31742279 31742279 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon35 c.C5256T p.P1752P . . . RYR3 6263 broad.mit.edu 36 15 31827731 31827731 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon54 c.G8114A p.R2705Q . . . RYR3 6263 broad.mit.edu 36 15 31834618 31834618 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon58 c.C8460T p.F2820F . . . RYR3 6263 broad.mit.edu 36 15 31859783 31859783 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon65 c.C9217T p.R3073C . . . RYR3 6263 broad.mit.edu 36 15 31896393 31896393 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon75 c.G10541T p.R3514I . . . RYR3 6263 broad.mit.edu 36 15 31898172 31898172 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon76 c.G10701T p.E3567D . . . RYR3 6263 broad.mit.edu 36 15 31910565 31910565 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon86 c.C11444A p.S3815Y . . . RYR3 6263 broad.mit.edu 36 15 31921430 31921430 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon91 c.A13111C p.K4371Q . . . RYR3 6263 broad.mit.edu 36 15 31921492 31921492 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001036 exon91 c.C13173A p.F4391L . . . AVEN 57099 broad.mit.edu 36 15 32082611 32082611 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020371 exon2 c.G359A p.R120Q . . . CHRM5 1133 broad.mit.edu 36 15 32143547 32143547 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012125 exon3 c.C1337A p.A446D . . . PGBD4 161779 broad.mit.edu 36 15 32183717 32183717 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152595 exon1 c.G1693A p.E565K . . . C15orf29 79768 broad.mit.edu 36 15 32243112 32243112 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024713 exon2 c.C58A p.H20N . . . SLC12A6 9990 broad.mit.edu 36 15 32317886 32317886 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042497 exon19 c.C2596T p.R866X . . . C15orf55 256646 broad.mit.edu 36 15 32436295 32436295 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175741 exon7 c.C2710A p.L904I . . . AQR 9716 broad.mit.edu 36 15 32939565 32939565 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014691 exon34 c.T4113C p.H1371H . . . AQR 9716 broad.mit.edu 36 15 32962107 32962107 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014691 exon27 c.G3053A p.R1018Q . . . AQR 9716 broad.mit.edu 36 15 32980250 32980250 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014691 exon20 c.C2108T p.S703L . . . AQR 9716 broad.mit.edu 36 15 33027777 33027777 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014691 exon5 c.G310T p.E104X . . . ATPBD4 89978 broad.mit.edu 36 15 33601720 33601720 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001141972 exon4 c.G364A p.D122N . . . MEIS2 4212 broad.mit.edu 36 15 34976127 34976127 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170676 exon10 c.C1030T p.R344X . . . MEIS2 4212 broad.mit.edu 36 15 35177537 35177537 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_170676 exon2 c.G168A p.P56P . . . MEIS2 4212 broad.mit.edu 36 15 35178951 35178951 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170676 exon1 c.A9G p.Q3Q . . . SPRED1 161742 broad.mit.edu 36 15 36378904 36378904 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152594 exon2 c.G71A p.R24Q . . . FAM98B 283742 broad.mit.edu 36 15 36549766 36549766 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173611 exon4 c.G399T p.K133N . . . RASGRP1 10125 broad.mit.edu 36 15 36591122 36591122 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005739 exon8 c.C941T p.S314L . . . THBS1 7057 broad.mit.edu 36 15 37661860 37661860 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003246 exon3 c.C242A p.A81D . . . THBS1 7057 broad.mit.edu 36 15 37670086 37670086 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003246 exon14 c.C2223T p.D741D . . . FSIP1 161835 broad.mit.edu 36 15 37697528 37697528 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152597 exon11 c.G1399T p.D467Y . . . FSIP1 161835 broad.mit.edu 36 15 37817678 37817678 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152597 exon8 c.G797T p.R266I . . . EIF2AK4 440275 broad.mit.edu 36 15 38053210 38053210 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001013703 exon11 c.C1786A p.L596I . . . EIF2AK4 440275 broad.mit.edu 36 15 38105481 38105481 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001013703 exon33 c.C4401T p.F1467F . . . BUB1B 701 broad.mit.edu 36 15 38292094 38292094 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001211 exon19 c.G2488T p.D830Y . . . BUB1B 701 broad.mit.edu 36 15 38300087 38300087 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001211 exon23 c.C2988A p.F996L . . . DISP2 85455 broad.mit.edu 36 15 38448433 38448433 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033510 exon8 c.G2828A p.R943H . . . C15orf23 90417 broad.mit.edu 36 15 38471013 38471013 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033286 exon7 c.G713A p.R238Q . . . CASC5 57082 broad.mit.edu 36 15 38703007 38703007 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_170589 exon11 c.G3331T p.D1111Y . . . CASC5 57082 broad.mit.edu 36 15 38726536 38726536 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_170589 exon18 c.C6144T p.I2048I . . . PPP1R14D 54866 broad.mit.edu 36 15 38908081 38908081 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130143 exon1 c.G51T p.E17D . . . INO80 54617 broad.mit.edu 36 15 39129495 39129495 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017553 exon20 c.C2372A p.S791Y . . . INO80 54617 broad.mit.edu 36 15 39134761 39134761 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017553 exon18 c.G2164A p.E722K . . . INO80 54617 broad.mit.edu 36 15 39171569 39171569 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017553 exon5 c.G485A p.R162Q . . . EXD1 161829 broad.mit.edu 36 15 39275435 39275435 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152596 exon6 c.G453T p.K151N . . . NDUFAF1 51103 broad.mit.edu 36 15 39476499 39476499 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016013 exon2 c.C51T p.F17F . . . RTF1 23168 broad.mit.edu 36 15 39545718 39545718 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015138 exon6 c.C865T p.R289X . . . RPAP1 26015 broad.mit.edu 36 15 39606522 39606522 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015540 exon14 c.C1783T p.R595X . . . TYRO3 7301 broad.mit.edu 36 15 39640747 39640747 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006293 exon2 c.C255A p.N85K . . . MGA 23269 broad.mit.edu 36 15 39778566 39778566 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164273 exon5 c.G2105T p.R702I . . . MGA 23269 broad.mit.edu 36 15 39808720 39808720 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164273 exon11 c.C3724T p.R1242X . . . MGA 23269 broad.mit.edu 36 15 39839933 39839933 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164273 exon20 c.G7312T p.E2438X . . . MGA 23269 broad.mit.edu 36 15 39845521 39845521 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164273 exon24 c.G7949A p.R2650Q . . . SPTBN5 51332 broad.mit.edu 36 15 39932130 39932130 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016642 exon61 c.G10338T p.K3446N . . . SPTBN5 51332 broad.mit.edu 36 15 39943269 39943269 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016642 exon41 c.G6969T p.Q2323H . . . EHD4 30844 broad.mit.edu 36 15 39980216 39980216 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_139265 exon6 c.C1545T p.L515L . . . PLA2G4E 123745 broad.mit.edu 36 15 40068925 40068925 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080490 exon14 c.C1616A p.S539Y . . . PLA2G4E 123745 broad.mit.edu 36 15 40069724 40069724 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080490 exon13 c.G1385T p.R462I . . . PLA2G4E 123745 broad.mit.edu 36 15 40080699 40080699 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080490 exon6 c.C534A p.V178V . . . PLA2G4F 255189 broad.mit.edu 36 15 40225132 40225132 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_213600 exon16 c.C1713A p.I571I . . . GANC 2595 broad.mit.edu 36 15 40386071 40386071 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198141 exon7 c.A594C p.K198N . . . CAPN3 825 broad.mit.edu 36 15 40469451 40469451 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212465 exon10 c.G549A p.T183T . . . ZFP106 64397 broad.mit.edu 36 15 40504335 40504335 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022473 exon13 c.C5110A p.L1704I . . . ZFP106 64397 broad.mit.edu 36 15 40529751 40529751 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022473 exon2 c.C1942T p.R648C . . . CDAN1 146059 broad.mit.edu 36 15 40815554 40815554 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138477 exon3 c.G584A p.R195H . . . TTBK2 146057 broad.mit.edu 36 15 40832246 40832246 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_173500 exon14 c.T2490G p.T830T . . . TTBK2 146057 broad.mit.edu 36 15 40832416 40832416 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173500 exon14 c.C2320A p.P774T . . . TTBK2 146057 broad.mit.edu 36 15 40854806 40854806 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_173500 exon13 c.A1817C p.N606T . . . UBR1 197131 broad.mit.edu 36 15 41096654 41096654 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174916 exon28 c.G2958A p.K986K . . . UBR1 197131 broad.mit.edu 36 15 41126690 41126690 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174916 exon14 c.G1629T p.K543N . . . UBR1 197131 broad.mit.edu 36 15 41126763 41126763 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174916 exon14 c.G1556T p.R519L . . . UBR1 197131 broad.mit.edu 36 15 41127913 41127913 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174916 exon13 c.G1508A p.R503Q . . . CCNDBP1 23582 broad.mit.edu 36 15 41269588 41269588 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012142 exon5 c.C375T p.I125I . . . CCNDBP1 23582 broad.mit.edu 36 15 41271080 41271080 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_037370 exon6 c.C391T p.R131W . . . CCNDBP1 23582 broad.mit.edu 36 15 41272286 41272286 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_037370 exon7 c.G530A p.R177Q . . . TGM5 9333 broad.mit.edu 36 15 41315057 41315057 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004245 exon9 c.T1370C p.L457P . . . TGM5 9333 broad.mit.edu 36 15 41318326 41318326 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004245 exon8 c.G1080T p.E360D . . . TGM5 9333 broad.mit.edu 36 15 41339614 41339614 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201631 exon3 c.G364A p.D122N . . . TGM7 116179 broad.mit.edu 36 15 41356451 41356451 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052955 exon12 c.G1874T p.R625I . . . TGM7 116179 broad.mit.edu 36 15 41358698 41358698 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052955 exon11 c.G1748A p.R583H . . . ZSCAN29 146050 broad.mit.edu 36 15 41440945 41440945 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152455 exon5 c.G2177T p.R726I . . . ZSCAN29 146050 broad.mit.edu 36 15 41443678 41443678 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152455 exon4 c.C1417T p.R473W . . . TP53BP1 7158 broad.mit.edu 36 15 41488540 41488540 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005657 exon26 c.G5432A p.R1811Q . . . TP53BP1 7158 broad.mit.edu 36 15 41500110 41500110 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005657 exon21 c.G4351T p.D1451Y . . . TP53BP1 7158 broad.mit.edu 36 15 41507597 41507597 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005657 exon18 c.G3722T p.R1241I . . . TP53BP1 7158 broad.mit.edu 36 15 41535783 41535783 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005657 exon12 c.G2300T p.R767I . . . TP53BP1 7158 broad.mit.edu 36 15 41535874 41535874 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005657 exon12 c.G2209T p.E737X . . . TP53BP1 7158 broad.mit.edu 36 15 41558990 41558990 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005657 exon7 c.G670A p.E224K . . . MAP1A 4130 broad.mit.edu 36 15 41600984 41600984 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002373 exon4 c.C21A p.F7L . . . MAP1A 4130 broad.mit.edu 36 15 41601551 41601551 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002373 exon4 c.C588T p.G196G . . . MAP1A 4130 broad.mit.edu 36 15 41605583 41605583 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002373 exon4 c.G4620T p.K1540N . . . MAP1A 4130 broad.mit.edu 36 15 41605908 41605908 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002373 exon4 c.G4945A p.E1649K . . . STRC 161497 broad.mit.edu 36 15 41687414 41687414 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153700 exon18 c.G3733A p.E1245K . . . CATSPER2 117155 broad.mit.edu 36 15 41712213 41712213 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_054020 exon11 c.T1384G p.S462A . . . CATSPER2 117155 broad.mit.edu 36 15 41712307 41712307 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054020 exon11 c.G1290A p.E430E . . . SERINC4 619189 broad.mit.edu 36 15 41874586 41874586 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001033517 exon11 c.A729G p.P243P . . . CASC4 113201 broad.mit.edu 36 15 42408239 42408239 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_177974 exon3 c.G447A p.K149K . . . CTDSPL2 51496 broad.mit.edu 36 15 42600805 42600805 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016396 exon12 c.C1244A p.S415Y . . . EIF3J 8669 broad.mit.edu 36 15 42630380 42630380 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003758 exon3 c.C162T p.D54D . . . EIF3J 8669 broad.mit.edu 36 15 42637005 42637005 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003758 exon6 c.G436T p.D146Y . . . SPG11 80208 broad.mit.edu 36 15 42728463 42728463 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025137 exon7 c.G1495T p.E499X . . . SPG11 80208 broad.mit.edu 36 15 42731387 42731387 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025137 exon6 c.G1050T p.K350N . . . TRIM69 140691 broad.mit.edu 36 15 42834416 42834416 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182985 exon2 c.C33T p.I11I . . . TRIM69 140691 broad.mit.edu 36 15 42846815 42846815 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182985 exon7 c.G1056T p.K352N . . . SORD 6652 broad.mit.edu 36 15 43140664 43140664 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003104 exon4 c.G373A p.D125N . . . DUOXA1 90527 broad.mit.edu 36 15 43198711 43198711 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144565 exon9 c.G917A p.R306H . . . DUOX1 53905 broad.mit.edu 36 15 43223662 43223662 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017434 exon18 c.C2073T p.F691F . . . DUOX1 53905 broad.mit.edu 36 15 43243030 43243030 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017434 exon33 c.C4257A p.F1419L . . . C15orf48 84419 broad.mit.edu 36 15 43511622 43511622 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_197955 exon4 c.G183T p.K61N . . . SLC30A4 7782 broad.mit.edu 36 15 43567052 43567052 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013309 exon6 c.G965A p.R322Q . . . SEMA6D 80031 broad.mit.edu 36 15 45839845 45839845 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153619 exon3 c.G162T p.Q54H . . . SEMA6D 80031 broad.mit.edu 36 15 45842567 45842567 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153619 exon9 c.G721A p.A241T . . . SEMA6D 80031 broad.mit.edu 36 15 45843460 45843460 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153619 exon10 c.C869T p.S290L . . . SLC12A1 6557 broad.mit.edu 36 15 46300415 46300415 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001184832 exon4 c.A558G p.R186R . . . SLC12A1 6557 broad.mit.edu 36 15 46305967 46305967 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000338 exon5 c.C631A p.L211I . . . SLC12A1 6557 broad.mit.edu 36 15 46312260 46312260 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001184832 exon8 c.C1020A p.N340K . . . SLC12A1 6557 broad.mit.edu 36 15 46314396 46314396 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001184832 exon9 c.G1118A p.R373H . . . SLC12A1 6557 broad.mit.edu 36 15 46347185 46347185 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001184832 exon18 c.C2290A p.L764I . . . FBN1 2200 broad.mit.edu 36 15 46490745 46490745 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000138 exon66 c.C8350A p.L2784I . . . FBN1 2200 broad.mit.edu 36 15 46495243 46495243 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000138 exon64 c.C7833T p.C2611C . . . FBN1 2200 broad.mit.edu 36 15 46516510 46516510 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000138 exon53 c.G6436T p.D2146Y . . . FBN1 2200 broad.mit.edu 36 15 46517281 46517281 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000138 exon51 c.G6289A p.E2097K . . . FBN1 2200 broad.mit.edu 36 15 46536157 46536157 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000138 exon44 c.C5391A p.F1797L . . . FBN1 2200 broad.mit.edu 36 15 46552136 46552136 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000138 exon35 c.C4240A p.L1414I . . . FBN1 2200 broad.mit.edu 36 15 46563401 46563401 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000138 exon31 c.C3744A p.I1248I . . . FBN1 2200 broad.mit.edu 36 15 46584595 46584595 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000138 exon16 c.C1879T p.R627C . . . CEP152 22995 broad.mit.edu 36 15 46818071 46818071 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001194998 exon27 c.A4800G p.E1600E . . . CEP152 22995 broad.mit.edu 36 15 46824449 46824449 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001194998 exon23 c.G3667T p.E1223X . . . CEP152 22995 broad.mit.edu 36 15 46841924 46841924 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001194998 exon18 c.G2518A p.E840K . . . CEP152 22995 broad.mit.edu 36 15 46877204 46877204 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001194998 exon4 c.G207A p.E69E . . . CEP152 22995 broad.mit.edu 36 15 46885078 46885078 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001194998 exon2 c.G61A p.E21K . . . SECISBP2L 9728 broad.mit.edu 36 15 47075937 47075937 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014701 exon16 c.C2407T p.R803W . . . SECISBP2L 9728 broad.mit.edu 36 15 47088833 47088833 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014701 exon13 c.C1764T p.L588L . . . SECISBP2L 9728 broad.mit.edu 36 15 47091262 47091262 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014701 exon12 c.G1687T p.D563Y . . . SECISBP2L 9728 broad.mit.edu 36 15 47114860 47114860 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014701 exon3 c.G491A p.R164Q . . . GALK2 2585 broad.mit.edu 36 15 47315406 47315406 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002044 exon4 c.C333A p.F111L . . . C15orf33 196951 broad.mit.edu 36 15 47656326 47656326 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152647 exon7 c.C450T p.S150S . . . C15orf33 196951 broad.mit.edu 36 15 47690755 47690755 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152647 exon3 c.A54T p.K18N . . . DTWD1 56986 broad.mit.edu 36 15 47714074 47714074 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001144955 exon4 c.C458A p.S153Y . . . ATP8B4 79895 broad.mit.edu 36 15 47941817 47941817 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024837 exon27 c.C3214A p.L1072I . . . ATP8B4 79895 broad.mit.edu 36 15 48052079 48052079 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024837 exon13 c.G1235T p.R412I . . . HDC 3067 broad.mit.edu 36 15 48331952 48331952 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002112 exon9 c.G1008A p.R336R . . . HDC 3067 broad.mit.edu 36 15 48337936 48337936 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002112 exon3 c.G275T p.G92V . . . GABPB1 2553 broad.mit.edu 36 15 48358215 48358215 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005254 exon9 c.G1094A p.R365Q . . . GABPB1 2553 broad.mit.edu 36 15 48365640 48365640 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002041 exon8 c.G952T p.E318X . . . USP8 9101 broad.mit.edu 36 15 48561245 48561245 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128611 exon12 c.A1494G p.E498E . . . USP8 9101 broad.mit.edu 36 15 48573664 48573664 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128611 exon17 c.A2553C p.K851N . . . USP50 373509 broad.mit.edu 36 15 48618292 48618292 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_203494 exon5 c.G709A p.E237K . . . USP50 373509 broad.mit.edu 36 15 48623159 48623159 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_203494 exon3 c.G372A p.T124T . . . TRPM7 54822 broad.mit.edu 36 15 48641181 48641181 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017672 exon39 c.C5584T p.R1862C . . . TRPM7 54822 broad.mit.edu 36 15 48689122 48689122 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017672 exon19 c.G2528A p.R843Q . . . TRPM7 54822 broad.mit.edu 36 15 48716922 48716922 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017672 exon7 c.G821T p.R274I . . . TRPM7 54822 broad.mit.edu 36 15 48737289 48737289 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017672 exon3 c.A103T p.I35F . . . SPPL2A 84888 broad.mit.edu 36 15 48828189 48828189 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032802 exon3 c.T348C p.N116N . . . AP4E1 23431 broad.mit.edu 36 15 49004656 49004656 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007347 exon5 c.G490A p.E164K . . . AP4E1 23431 broad.mit.edu 36 15 49010296 49010296 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007347 exon7 c.G705T p.E235D . . . AP4E1 23431 broad.mit.edu 36 15 49076869 49076869 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007347 exon18 c.G2401T p.E801X . . . AP4E1 23431 broad.mit.edu 36 15 49077000 49077000 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007347 exon18 c.G2532T p.K844N . . . TNFAIP8L3 388121 broad.mit.edu 36 15 49137493 49137493 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207381 exon3 c.C756A p.V252V . . . CYP19A1 1588 broad.mit.edu 36 15 49290532 49290532 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031226 exon11 c.A1277G p.Y426C . . . DMXL2 23312 broad.mit.edu 36 15 49578523 49578523 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015263 exon18 c.G4190A p.R1397Q . . . DMXL2 23312 broad.mit.edu 36 15 49593955 49593955 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015263 exon15 c.G2620T p.E874X . . . DMXL2 23312 broad.mit.edu 36 15 49615960 49615960 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015263 exon12 c.A2009C p.H670P . . . SCG3 29106 broad.mit.edu 36 15 49762026 49762026 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013243 exon2 c.G103A p.E35K . . . MAPK6 5597 broad.mit.edu 36 15 50143519 50143519 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002748 exon6 c.G1196A p.R399Q . . . MYO5C 55930 broad.mit.edu 36 15 50319283 50319283 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018728 exon21 c.T2642C p.F881S . . . MYO5C 55930 broad.mit.edu 36 15 50340530 50340530 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018728 exon10 c.C1134T p.I378I . . . MYO5C 55930 broad.mit.edu 36 15 50355148 50355148 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018728 exon5 c.C509T p.S170L . . . MYO5A 4644 broad.mit.edu 36 15 50449867 50449867 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000259 exon22 c.C2857A p.L953M . . . KIAA1370 56204 broad.mit.edu 36 15 50664277 50664277 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019600 exon12 c.C3034T p.R1012X . . . KIAA1370 56204 broad.mit.edu 36 15 50684704 50684704 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019600 exon7 c.G2378A p.R793Q . . . KIAA1370 56204 broad.mit.edu 36 15 50689515 50689515 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_019600 exon6 c.A888C p.K296N . . . WDR72 256764 broad.mit.edu 36 15 51597229 51597229 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182758 exon20 c.C3268A p.H1090N . . . WDR72 256764 broad.mit.edu 36 15 51602749 51602749 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182758 exon19 c.G3211A p.D1071N . . . WDR72 256764 broad.mit.edu 36 15 51695014 51695014 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182758 exon15 c.C2681A p.S894Y . . . WDR72 256764 broad.mit.edu 36 15 51745231 51745231 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182758 exon14 c.G1792T p.E598X . . . WDR72 256764 broad.mit.edu 36 15 51784690 51784690 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182758 exon11 c.G1135T p.D379Y . . . UNC13C 440279 broad.mit.edu 36 15 52093626 52093626 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080534 exon1 c.G1234T p.D412Y . . . UNC13C 440279 broad.mit.edu 36 15 52094307 52094307 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080534 exon1 c.G1915A p.D639N . . . PIGB 9488 broad.mit.edu 36 15 53434319 53434319 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004855 exon11 c.C1369A p.L457I . . . PYGO1 26108 broad.mit.edu 36 15 53628406 53628406 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015617 exon2 c.T129C p.N43N . . . NEDD4 4734 broad.mit.edu 36 15 53909398 53909398 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006154 exon29 c.G2692T p.G898X . . . NEDD4 4734 broad.mit.edu 36 15 53932017 53932017 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006154 exon13 c.C1043A p.S348Y . . . NEDD4 4734 broad.mit.edu 36 15 53949160 53949160 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006154 exon8 c.G416T p.R139I . . . NEDD4 4734 broad.mit.edu 36 15 53995252 53995252 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198400 exon1 c.C1070T p.S357L . . . RFX7 64864 broad.mit.edu 36 15 54173078 54173078 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022841 exon9 c.C4140A p.F1380L . . . MNS1 55329 broad.mit.edu 36 15 54513838 54513838 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018365 exon8 c.T1059G p.D353E . . . ZNF280D 54816 broad.mit.edu 36 15 54756235 54756235 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017661 exon13 c.G1335T p.K445N . . . TCF12 6938 broad.mit.edu 36 15 55312271 55312271 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207037 exon11 c.C895T p.R299C . . . TCF12 6938 broad.mit.edu 36 15 55352617 55352617 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207037 exon19 c.C1843T p.R615W . . . TCF12 6938 broad.mit.edu 36 15 55361991 55361991 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207037 exon20 c.T2035C p.S679P . . . CGNL1 84952 broad.mit.edu 36 15 55517877 55517877 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032866 exon2 c.C388A p.L130I . . . CGNL1 84952 broad.mit.edu 36 15 55518197 55518197 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032866 exon2 c.C708A p.N236K . . . LIPC 3990 broad.mit.edu 36 15 56625295 56625295 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000236 exon5 c.G637T p.D213Y . . . LIPC 3990 broad.mit.edu 36 15 56643056 56643056 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000236 exon8 c.C1230T p.I410I . . . ADAM10 102 broad.mit.edu 36 15 56712816 56712816 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001110 exon9 c.C1047A p.L349L . . . FAM63B 54629 broad.mit.edu 36 15 56851450 56851450 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040453 exon1 c.C564A p.S188R . . . SLTM 79811 broad.mit.edu 36 15 56969911 56969911 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024755 exon15 c.G1940A p.R647H . . . SLTM 79811 broad.mit.edu 36 15 56979121 56979121 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024755 exon7 c.G897T p.M299I . . . RNF111 54778 broad.mit.edu 36 15 57131903 57131903 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017610 exon3 c.A988C p.T330P . . . MYO1E 4643 broad.mit.edu 36 15 57267691 57267691 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004998 exon18 c.G1822A p.E608K . . . MYO1E 4643 broad.mit.edu 36 15 57274986 57274986 + Missense_Mutation SNP C T T rs11539755 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004998 exon17 c.G1771A p.E591K . . . LDHAL6B 92483 broad.mit.edu 36 15 57287377 57287377 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033195 exon1 c.C946A p.L316I . . . GCNT3 9245 broad.mit.edu 36 15 57698662 57698662 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004751 exon3 c.G933T p.K311N . . . VPS13C 54832 broad.mit.edu 36 15 59956526 59956526 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon73 c.C10033T p.R3345X . . . VPS13C 54832 broad.mit.edu 36 15 60001982 60001982 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon52 c.G6752A p.R2251Q . . . VPS13C 54832 broad.mit.edu 36 15 60006761 60006761 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon50 c.G6208T p.E2070X . . . VPS13C 54832 broad.mit.edu 36 15 60010583 60010583 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon48 c.G5907A p.S1969S . . . VPS13C 54832 broad.mit.edu 36 15 60043341 60043341 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon30 c.G3187A p.E1063K . . . VPS13C 54832 broad.mit.edu 36 15 60056589 60056589 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon22 c.G2263T p.D755Y . . . VPS13C 54832 broad.mit.edu 36 15 60092536 60092536 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon9 c.G690T p.Q230H . . . VPS13C 54832 broad.mit.edu 36 15 60093441 60093441 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017684 exon8 c.G598T p.D200Y . . . TLN2 83660 broad.mit.edu 36 15 60820203 60820203 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015059 exon29 c.C3968A p.S1323Y . . . TLN2 83660 broad.mit.edu 36 15 60827932 60827932 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015059 exon30 c.C4116T p.L1372L . . . TLN2 83660 broad.mit.edu 36 15 60831891 60831891 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015059 exon32 c.C4305A p.L1435L . . . TLN2 83660 broad.mit.edu 36 15 60845863 60845863 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015059 exon38 c.G5146A p.D1716N . . . TLN2 83660 broad.mit.edu 36 15 60871895 60871895 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015059 exon43 c.C5739T p.I1913I . . . TLN2 83660 broad.mit.edu 36 15 60919814 60919814 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015059 exon56 c.G7581T p.Q2527H . . . RAB8B 51762 broad.mit.edu 36 15 61334827 61334827 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016530 exon4 c.C315A p.N105K . . . APH1B 83464 broad.mit.edu 36 15 61358419 61358419 + Missense_Mutation SNP C A A rs11554840 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031301 exon2 c.C120A p.F40L . . . HERC1 8925 broad.mit.edu 36 15 61730530 61730530 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003922 exon53 c.G10521T p.K3507N . . . HERC1 8925 broad.mit.edu 36 15 61742399 61742399 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003922 exon44 c.C8738A p.S2913Y . . . HERC1 8925 broad.mit.edu 36 15 61753896 61753896 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003922 exon38 c.C7544T p.A2515V . . . HERC1 8925 broad.mit.edu 36 15 61771759 61771759 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003922 exon31 c.C5734T p.R1912C . . . HERC1 8925 broad.mit.edu 36 15 61812396 61812396 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003922 exon14 c.G2648T p.R883I . . . SNX1 6642 broad.mit.edu 36 15 62207058 62207058 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003099 exon8 c.G807T p.E269D . . . SNX1 6642 broad.mit.edu 36 15 62215617 62215617 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003099 exon13 c.C1401T p.F467F . . . ZNF609 23060 broad.mit.edu 36 15 62578735 62578735 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015042 exon1 c.G64A p.D22N . . . OAZ2 4947 broad.mit.edu 36 15 62769720 62769720 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002537 exon3 c.G260A p.R87Q . . . ANKDD1A 348094 broad.mit.edu 36 15 63026850 63026850 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182703 exon13 c.C1335T p.I445I . . . ANKDD1A 348094 broad.mit.edu 36 15 63029209 63029209 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182703 exon14 c.C1446T p.F482F . . . MTFMT 123263 broad.mit.edu 36 15 63082612 63082612 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139242 exon9 c.G1011T p.K337N . . . CILP 8483 broad.mit.edu 36 15 63277133 63277133 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003613 exon9 c.C2544T p.G848G . . . IGDCC3 9543 broad.mit.edu 36 15 63411398 63411398 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004884 exon7 c.T1082C p.V361A . . . SLC24A1 9187 broad.mit.edu 36 15 63704077 63704077 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004727 exon2 c.G606A p.P202P . . . DENND4A 10260 broad.mit.edu 36 15 63812181 63812181 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001144823 exon8 c.C1070A p.P357H . . . DENND4A 10260 broad.mit.edu 36 15 63831971 63831971 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001144823 exon4 c.C361A p.Q121K . . . RAB11A 8766 broad.mit.edu 36 15 63956781 63956781 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004663 exon2 c.G98A p.R33Q . . . MEGF11 84465 broad.mit.edu 36 15 63997464 63997464 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032445 exon16 c.G1980A p.G660G . . . DIS3L 115752 broad.mit.edu 36 15 64412442 64412442 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001143688 exon17 c.G2903A p.R968K . . . MAP2K1 5604 broad.mit.edu 36 15 64568644 64568644 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002755 exon9 c.A998C p.E333A . . . SMAD3 4088 broad.mit.edu 36 15 65246172 65246172 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145103 exon4 c.G402T p.E134D . . . IQCH 64799 broad.mit.edu 36 15 65451756 65451756 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031715 exon9 c.A1007T p.K336I . . . IQCH 64799 broad.mit.edu 36 15 65500924 65500924 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031715 exon16 c.G2460A p.S820S . . . MAP2K5 5607 broad.mit.edu 36 15 65772959 65772959 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145160 exon15 c.C971T p.A324V . . . SKOR1 390598 broad.mit.edu 36 15 65905850 65905850 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001031807 exon2 c.C603T p.C201C . . . CALML4 91860 broad.mit.edu 36 15 66276941 66276941 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001031733 exon3 c.A243C p.E81D . . . ITGA11 22801 broad.mit.edu 36 15 66399752 66399752 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004439 exon20 c.C2441T p.A814V . . . NOX5 79400 broad.mit.edu 36 15 67128436 67128436 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184779 exon14 c.C1899T p.A633A . . . GLCE 26035 broad.mit.edu 36 15 67335251 67335251 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015554 exon3 c.G52A p.A18T . . . GLCE 26035 broad.mit.edu 36 15 67335661 67335661 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015554 exon3 c.C462A p.F154L . . . GLCE 26035 broad.mit.edu 36 15 67348221 67348221 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015554 exon5 c.C1438A p.L480I . . . KIF23 9493 broad.mit.edu 36 15 67505538 67505538 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004856 exon8 c.G810T p.V270V . . . UACA 55075 broad.mit.edu 36 15 68746152 68746152 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018003 exon16 c.G3925T p.E1309X . . . UACA 55075 broad.mit.edu 36 15 68747874 68747874 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018003 exon16 c.A2203C p.N735H . . . UACA 55075 broad.mit.edu 36 15 68759068 68759068 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018003 exon10 c.G824A p.R275Q . . . LARP6 55323 broad.mit.edu 36 15 68911949 68911949 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018357 exon3 c.C972T p.V324V . . . LARP6 55323 broad.mit.edu 36 15 68912132 68912132 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018357 exon3 c.C789T p.F263F . . . THSD4 79875 broad.mit.edu 36 15 69739961 69739961 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024817 exon7 c.C1191T p.V397V . . . MYO9A 4649 broad.mit.edu 36 15 69978293 69978293 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006901 exon25 c.G3605T p.R1202I . . . MYO9A 4649 broad.mit.edu 36 15 69982424 69982424 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006901 exon22 c.G2912A p.R971Q . . . MYO9A 4649 broad.mit.edu 36 15 70014797 70014797 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006901 exon17 c.G2461T p.D821Y . . . MYO9A 4649 broad.mit.edu 36 15 70018252 70018252 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006901 exon16 c.C2373A p.N791K . . . GRAMD2 196996 broad.mit.edu 36 15 70248352 70248352 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012642 exon3 c.G174T p.K58N . . . PKM2 5315 broad.mit.edu 36 15 70288039 70288039 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002654 exon6 c.C813T p.I271I . . . TMEM202 338949 broad.mit.edu 36 15 70486539 70486539 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080462 exon4 c.G546A p.R182R . . . ARIH1 25820 broad.mit.edu 36 15 70634696 70634696 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005744 exon4 c.T619C p.F207L . . . ARIH1 25820 broad.mit.edu 36 15 70640931 70640931 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005744 exon6 c.A791C p.N264T . . . NEO1 4756 broad.mit.edu 36 15 71329101 71329101 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172623 exon11 c.G1880A p.R627Q . . . NEO1 4756 broad.mit.edu 36 15 71334183 71334183 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172623 exon13 c.G2052T p.E684D . . . HCN4 10021 broad.mit.edu 36 15 71403620 71403620 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005477 exon7 c.G2006A p.R669H . . . HCN4 10021 broad.mit.edu 36 15 71404530 71404530 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005477 exon6 c.G1797A p.A599A . . . ARID3B 10620 broad.mit.edu 36 15 72671200 72671200 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006465 exon7 c.A1412G p.N471S . . . CPLX3 594855 broad.mit.edu 36 15 72909730 72909730 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030005 exon3 c.G459T p.E153D . . . C15orf39 56905 broad.mit.edu 36 15 73286626 73286626 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015492 exon2 c.G1184A p.G395E . . . SIN3A 25942 broad.mit.edu 36 15 73451602 73451602 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145358 exon21 c.C3593T p.S1198F . . . SIN3A 25942 broad.mit.edu 36 15 73472106 73472106 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145358 exon15 c.T2381G p.I794S . . . SIN3A 25942 broad.mit.edu 36 15 73480222 73480222 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145358 exon11 c.G1639T p.D547Y . . . SIN3A 25942 broad.mit.edu 36 15 73486536 73486536 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145358 exon9 c.G1320T p.K440N . . . SIN3A 25942 broad.mit.edu 36 15 73491016 73491016 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145358 exon6 c.C878T p.A293V . . . SIN3A 25942 broad.mit.edu 36 15 73493622 73493622 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145358 exon4 c.C450A p.I150I . . . SIN3A 25942 broad.mit.edu 36 15 73502163 73502163 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145358 exon3 c.C244A p.H82N . . . PTPN9 5780 broad.mit.edu 36 15 73585108 73585108 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002833 exon7 c.C931T p.R311C . . . SNUPN 10073 broad.mit.edu 36 15 73680575 73680575 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042581 exon8 c.G718A p.E240K . . . FBXO22 26263 broad.mit.edu 36 15 73993515 73993515 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147188 exon4 c.G377T p.R126I . . . ETFA 2108 broad.mit.edu 36 15 74305315 74305315 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127716 exon10 c.C746T p.A249V . . . SCAPER 49855 broad.mit.edu 36 15 74430669 74430669 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145923 exon31 c.C3325A p.P1109T . . . RCN2 5955 broad.mit.edu 36 15 75028468 75028468 + Silent SNP G A A rs17849874 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002902 exon7 c.G804A p.A268A . . . TSPAN3 10099 broad.mit.edu 36 15 75132269 75132269 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001168412 exon4 c.G298T p.E100X . . . SGK269 79834 broad.mit.edu 36 15 75259893 75259893 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024776 exon3 c.C1431T p.V477V . . . SGK269 79834 broad.mit.edu 36 15 75260416 75260416 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024776 exon3 c.G908T p.R303I . . . LINGO1 84894 broad.mit.edu 36 15 75695031 75695031 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032808 exon2 c.C273T p.F91F . . . TBC1D2B 23102 broad.mit.edu 36 15 76109567 76109567 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144572 exon4 c.G684A p.K228K . . . IDH3A 3419 broad.mit.edu 36 15 76242922 76242922 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005530 exon7 c.T630G p.L210L . . . IDH3A 3419 broad.mit.edu 36 15 76248391 76248391 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005530 exon11 c.G1090T p.D364Y . . . IREB2 3658 broad.mit.edu 36 15 76551243 76551243 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004136 exon7 c.G805T p.D269Y . . . IREB2 3658 broad.mit.edu 36 15 76557754 76557754 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004136 exon10 c.G1256A p.R419Q . . . IREB2 3658 broad.mit.edu 36 15 76576649 76576649 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004136 exon21 c.G2722T p.E908X . . . CHRNA5 1138 broad.mit.edu 36 15 76669990 76669990 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000745 exon5 c.G1202A p.R401H . . . RASGRF1 5923 broad.mit.edu 36 15 77051307 77051307 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002891 exon27 c.C3685T p.R1229C . . . RASGRF1 5923 broad.mit.edu 36 15 77071166 77071166 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002891 exon22 c.T3101G p.F1034C . . . TMED3 23423 broad.mit.edu 36 15 77393223 77393223 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007364 exon2 c.G238T p.E80X . . . KIAA1024 23251 broad.mit.edu 36 15 77536396 77536396 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015206 exon2 c.G852A p.E284E . . . KIAA1024 23251 broad.mit.edu 36 15 77537722 77537722 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015206 exon2 c.C2178A p.I726I . . . FAH 2184 broad.mit.edu 36 15 78252535 78252535 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000137 exon9 c.G831A p.P277P . . . ARNT2 9915 broad.mit.edu 36 15 78549640 78549640 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014862 exon4 c.G221A p.R74H . . . KIAA1199 57214 broad.mit.edu 36 15 78960380 78960380 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018689 exon5 c.A465G p.G155G . . . MESDC2 23184 broad.mit.edu 36 15 79058819 79058819 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015154 exon3 c.C501A p.A167A . . . C15orf26 161502 broad.mit.edu 36 15 79215923 79215923 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173528 exon3 c.C171T p.S57S . . . C15orf26 161502 broad.mit.edu 36 15 79223149 79223149 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_173528 exon5 c.T569C p.V190A . . . IL16 3603 broad.mit.edu 36 15 79345101 79345101 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001172128 exon4 c.G468T p.K156N . . . IL16 3603 broad.mit.edu 36 15 79362103 79362103 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001172128 exon9 c.G1150A p.V384I . . . IL16 3603 broad.mit.edu 36 15 79376376 79376376 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001172128 exon13 c.G1955T p.R652I . . . IL16 3603 broad.mit.edu 36 15 79379257 79379257 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001172128 exon14 c.C2535A p.S845S . . . IL16 3603 broad.mit.edu 36 15 79385439 79385439 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001172128 exon17 c.C3556T p.R1186X . . . MEX3B 84206 broad.mit.edu 36 15 80122586 80122586 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032246 exon2 c.G1680A p.A560A . . . MEX3B 84206 broad.mit.edu 36 15 80123650 80123650 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032246 exon2 c.G616A p.E206K . . . FAM154B 283726 broad.mit.edu 36 15 80351112 80351112 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008226 exon2 c.C167T p.S56L . . . CPEB1 64506 broad.mit.edu 36 15 81013034 81013034 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001079535 exon8 c.C1183A p.R395S . . . CPEB1 64506 broad.mit.edu 36 15 81021842 81021842 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001079535 exon3 c.C467A p.S156Y . . . CPEB1 64506 broad.mit.edu 36 15 81037218 81037218 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001079535 exon1 c.C85A p.L29M . . . FSD2 123722 broad.mit.edu 36 15 81252663 81252663 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007122 exon2 c.C534A p.V178V . . . BNC1 646 broad.mit.edu 36 15 81723033 81723033 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001717 exon4 c.C1974A p.F658L . . . BNC1 646 broad.mit.edu 36 15 81723840 81723840 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001717 exon4 c.C1167T p.I389I . . . SH3GL3 6457 broad.mit.edu 36 15 82032380 82032380 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003027 exon5 c.C391A p.L131I . . . SH3GL3 6457 broad.mit.edu 36 15 82077962 82077962 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003027 exon9 c.C963A p.N321K . . . ADAMTSL3 57188 broad.mit.edu 36 15 82330661 82330661 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207517 exon9 c.C906T p.S302S . . . ADAMTSL3 57188 broad.mit.edu 36 15 82442193 82442193 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207517 exon21 c.C2809T p.R937X . . . ZSCAN2 54993 broad.mit.edu 36 15 82966263 82966263 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181877 exon3 c.G1833T p.E611D . . . ZNF592 9640 broad.mit.edu 36 15 83127333 83127333 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014630 exon4 c.C423A p.F141L . . . ZNF592 9640 broad.mit.edu 36 15 83129045 83129045 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014630 exon4 c.A2135C p.K712T . . . ALPK3 57538 broad.mit.edu 36 15 83183266 83183266 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020778 exon4 c.G962A p.R321H . . . ALPK3 57538 broad.mit.edu 36 15 83185013 83185013 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020778 exon5 c.C2105A p.S702Y . . . SLC28A1 9154 broad.mit.edu 36 15 83234739 83234739 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201651 exon5 c.C247T p.R83X . . . AKAP13 11214 broad.mit.edu 36 15 84037544 84037544 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006738 exon17 c.G5334T p.E1778D . . . AKAP13 11214 broad.mit.edu 36 15 84071346 84071346 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006738 exon28 c.G6880T p.E2294X . . . AGBL1 123624 broad.mit.edu 36 15 84741627 84741627 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152336 exon17 c.G2263A p.A755T . . . AGBL1 123624 broad.mit.edu 36 15 85332278 85332278 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152336 exon23 c.C3140T p.A1047V . . . NTRK3 4916 broad.mit.edu 36 15 86325544 86325544 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007156 exon14 c.G1637T p.R546I . . . NTRK3 4916 broad.mit.edu 36 15 86377194 86377194 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007156 exon13 c.G1483T p.D495Y . . . ACAN 176 broad.mit.edu 36 15 87199463 87199463 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135 exon12 c.C2643A p.D881E . . . ACAN 176 broad.mit.edu 36 15 87201445 87201445 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001135 exon12 c.T4625G p.F1542C . . . ACAN 176 broad.mit.edu 36 15 87201811 87201811 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135 exon12 c.C4991T p.S1664F . . . MFGE8 4240 broad.mit.edu 36 15 87243933 87243933 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005928 exon7 c.G984A p.A328A . . . ABHD2 11057 broad.mit.edu 36 15 87496051 87496051 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152924 exon4 c.G334A p.D112N . . . RLBP1 6017 broad.mit.edu 36 15 87554633 87554633 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000326 exon9 c.G841A p.D281N . . . RLBP1 6017 broad.mit.edu 36 15 87559464 87559464 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000326 exon6 c.A356C p.N119T . . . FANCI 55215 broad.mit.edu 36 15 87618420 87618420 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018193 exon12 c.G993T p.K331N . . . FANCI 55215 broad.mit.edu 36 15 87635859 87635859 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018193 exon20 c.C1902A p.F634L . . . C15orf42 90381 broad.mit.edu 36 15 87936408 87936408 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152259 exon5 c.T1538G p.F513C . . . KIF7 374654 broad.mit.edu 36 15 87973760 87973760 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198525 exon17 c.G3367A p.E1123K . . . KIF7 374654 broad.mit.edu 36 15 87978040 87978040 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198525 exon12 c.G2473A p.E825K . . . PLIN1 5346 broad.mit.edu 36 15 88014338 88014338 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002666 exon5 c.G475T p.D159Y . . . PEX11A 8800 broad.mit.edu 36 15 88027614 88027614 + Nonstop_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003847 exon3 c.T742G p.X248E . . . WDR93 56964 broad.mit.edu 36 15 88056302 88056302 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020212 exon5 c.C603A p.I201I . . . WDR93 56964 broad.mit.edu 36 15 88087531 88087531 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020212 exon17 c.C1966T p.R656W . . . ANPEP 290 broad.mit.edu 36 15 88143708 88143708 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001150 exon13 c.G1906A p.E636K . . . AP3S2 10239 broad.mit.edu 36 15 88248105 88248105 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182616 exon4 c.C416T p.A139V . . . ZNF710 374655 broad.mit.edu 36 15 88412799 88412799 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198526 exon2 c.C1426A p.H476N . . . TTLL13 440307 broad.mit.edu 36 15 88602370 88602370 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029964 exon9 c.C1032A p.I344I . . . ZNF774 342132 broad.mit.edu 36 15 88705167 88705167 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004309 exon4 c.G1100T p.R367I . . . ZNF774 342132 broad.mit.edu 36 15 88705335 88705335 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004309 exon4 c.G1268A p.R423Q . . . IQGAP1 8826 broad.mit.edu 36 15 88778004 88778004 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003870 exon5 c.G440T p.R147I . . . IQGAP1 8826 broad.mit.edu 36 15 88797016 88797016 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003870 exon12 c.G1168A p.A390T . . . IQGAP1 8826 broad.mit.edu 36 15 88836938 88836938 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003870 exon35 c.G4619T p.S1540I . . . CRTC3 64784 broad.mit.edu 36 15 88982806 88982806 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022769 exon12 c.C1391T p.A464V . . . BLM 641 broad.mit.edu 36 15 89093942 89093942 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000057 exon3 c.C440A p.S147Y . . . RCCD1 91433 broad.mit.edu 36 15 89304598 89304598 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033544 exon7 c.G815T p.R272I . . . PRC1 9055 broad.mit.edu 36 15 89314661 89314661 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003981 exon12 c.C1549T p.R517X . . . SV2B 9899 broad.mit.edu 36 15 89596670 89596670 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014848 exon5 c.G700A p.E234K . . . CHD2 1106 broad.mit.edu 36 15 91348891 91348891 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001271 exon34 c.G4319A p.R1440Q . . . CHD2 1106 broad.mit.edu 36 15 91364321 91364321 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001271 exon38 c.G4982T p.R1661M . . . MCTP2 55784 broad.mit.edu 36 15 92683593 92683593 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159643 exon4 c.G708T p.K236N . . . IGF1R 3480 broad.mit.edu 36 15 97257638 97257638 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000875 exon4 c.C1083A p.L361L . . . IGF1R 3480 broad.mit.edu 36 15 97300108 97300108 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000875 exon18 c.C3453T p.I1151I . . . PGPEP1L 145814 broad.mit.edu 36 15 97330205 97330205 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102612 exon4 c.G343A p.D115N . . . SYNM 23336 broad.mit.edu 36 15 97488843 97488843 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015286 exon4 c.G2754A p.P918P . . . SYNM 23336 broad.mit.edu 36 15 97490244 97490244 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145728 exon4 c.G4155T p.Q1385H . . . LRRC28 123355 broad.mit.edu 36 15 97743797 97743797 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144598 exon10 c.C1071T p.T357T . . . MEF2A 4205 broad.mit.edu 36 15 98048112 98048112 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005587 exon8 c.C820T p.R274X . . . LYSMD4 145748 broad.mit.edu 36 15 98087127 98087127 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152449 exon6 c.G618A p.P206P . . . ADAMTS17 170691 broad.mit.edu 36 15 98557098 98557098 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139057 exon8 c.G1129A p.E377K . . . ADAMTS17 170691 broad.mit.edu 36 15 98611901 98611901 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139057 exon7 c.T1038A p.D346E . . . LASS3 204219 broad.mit.edu 36 15 98848581 98848581 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178842 exon5 c.G252T p.E84D . . . LINS 55180 broad.mit.edu 36 15 98927844 98927844 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040616 exon7 c.G1396T p.G466X . . . LINS 55180 broad.mit.edu 36 15 98931710 98931710 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040616 exon5 c.G891A p.R297R . . . ASB7 140460 broad.mit.edu 36 15 98987421 98987421 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024708 exon5 c.C468T p.L156L . . . ALDH1A3 220 broad.mit.edu 36 15 99258483 99258483 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000693 exon9 c.C1064T p.P355L . . . ALDH1A3 220 broad.mit.edu 36 15 99266206 99266206 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000693 exon12 c.G1462T p.E488X . . . LRRK1 79705 broad.mit.edu 36 15 99406299 99406299 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024652 exon22 c.T3213G p.N1071K . . . PCSK6 5046 broad.mit.edu 36 15 99751126 99751126 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138322 exon8 c.C1021T p.R341C . . . HERC3 8916 broad.mit.edu 36 4 89810059 89810059 + Frame_Shift_Del DEL G - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_014606 exon15 c.1659delG p.P553fs . . . ADH4 127 broad.mit.edu 36 4 100267390 100267390 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000670 exon7 c.C972A p.F324L . . . ADH1B 125 broad.mit.edu 36 4 100451789 100451789 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000668 exon7 c.C876T p.I292I . . . ADH1B 125 broad.mit.edu 36 4 100454022 100454022 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000668 exon6 c.C807A p.V269V . . . ADH1C 126 broad.mit.edu 36 4 100483117 100483117 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000669 exon6 c.A686C p.K229T . . . ZNF518B 85460 broad.mit.edu 36 4 10056408 10056408 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_053042 exon3 c.A643G p.R215G . . . C4orf17 84103 broad.mit.edu 36 4 100653326 100653326 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032149 exon2 c.G65T p.R22I . . . MTTP 4547 broad.mit.edu 36 4 100722107 100722107 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000253 exon3 c.A84G p.L28L . . . MTTP 4547 broad.mit.edu 36 4 100737357 100737357 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000253 exon9 c.G1020T p.K340N . . . MTTP 4547 broad.mit.edu 36 4 100753129 100753129 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000253 exon16 c.G2026A p.A676T . . . DAPP1 27071 broad.mit.edu 36 4 100980480 100980480 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014395 exon3 c.C236A p.S79Y . . . CLNK 116449 broad.mit.edu 36 4 10101308 10101308 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052964 exon19 c.G1168A p.E390K . . . DNAJB14 79982 broad.mit.edu 36 4 101046735 101046735 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001031723 exon5 c.C694T p.R232X . . . DDIT4L 115265 broad.mit.edu 36 4 101327916 101327916 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145244 exon3 c.C523T p.R175X . . . CLNK 116449 broad.mit.edu 36 4 10175455 10175455 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052964 exon7 c.G337T p.D113Y . . . PPP3CA 5530 broad.mit.edu 36 4 102336183 102336183 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130691 exon2 c.G172T p.E58X . . . BANK1 55024 broad.mit.edu 36 4 102970367 102970367 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017935 exon2 c.C450T p.I150I . . . BANK1 55024 broad.mit.edu 36 4 103010781 103010781 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017935 exon5 c.A860C p.E287A . . . NFKB1 4790 broad.mit.edu 36 4 103678052 103678052 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165412 exon5 c.C166T p.R56C . . . NFKB1 4790 broad.mit.edu 36 4 103733668 103733668 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165412 exon12 c.C1112T p.S371L . . . NFKB1 4790 broad.mit.edu 36 4 103753746 103753746 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165412 exon23 c.C2708T p.S903L . . . MANBA 4126 broad.mit.edu 36 4 103814151 103814151 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005908 exon8 c.C1085A p.S362X . . . UBE2D3 7323 broad.mit.edu 36 4 103966781 103966781 + Intron SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181886 exon2 c.A20G p.N7S . . . NHEDC1 150159 broad.mit.edu 36 4 104052129 104052129 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_139173 exon8 c.A844C p.N282H . . . NHEDC1 150159 broad.mit.edu 36 4 104085829 104085829 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139173 exon6 c.A623C p.K208T . . . BDH2 56898 broad.mit.edu 36 4 104222738 104222738 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020139 exon9 c.C633T p.F211F . . . CENPE 1062 broad.mit.edu 36 4 104249445 104249445 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001813 exon48 c.C7975T p.R2659C . . . CENPE 1062 broad.mit.edu 36 4 104289810 104289810 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001813 exon27 c.G3601T p.E1201X . . . CENPE 1062 broad.mit.edu 36 4 104289876 104289876 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001813 exon27 c.A3535G p.T1179A . . . CENPE 1062 broad.mit.edu 36 4 104291911 104291911 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001813 exon26 c.G3310T p.E1104X . . . CENPE 1062 broad.mit.edu 36 4 104299481 104299481 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001813 exon23 c.G2613T p.K871N . . . CENPE 1062 broad.mit.edu 36 4 104321009 104321009 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001813 exon13 c.G1150T p.D384Y . . . TACR3 6870 broad.mit.edu 36 4 104730571 104730571 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001059 exon5 c.G1115A p.R372H . . . TET2 54790 broad.mit.edu 36 4 106375970 106375970 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017628 exon3 c.G1422A p.P474P . . . TET2 54790 broad.mit.edu 36 4 106376892 106376892 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017628 exon3 c.G2344T p.E782X . . . TET2 54790 broad.mit.edu 36 4 106377849 106377849 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017628 exon3 c.C3301A p.L1101I . . . PPA2 27068 broad.mit.edu 36 4 106511454 106511454 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006903 exon10 c.G878A p.S293N . . . PAPSS1 9061 broad.mit.edu 36 4 108834497 108834497 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005443 exon3 c.A290C p.K97T . . . SGMS2 166929 broad.mit.edu 36 4 109043988 109043988 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136257 exon4 c.G724T p.E242X . . . SGMS2 166929 broad.mit.edu 36 4 109050966 109050966 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001136257 exon6 c.C906A p.V302V . . . SGMS2 166929 broad.mit.edu 36 4 109051053 109051053 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136257 exon6 c.C993A p.C331X . . . SGMS2 166929 broad.mit.edu 36 4 109051149 109051149 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136257 exon6 c.A1089C p.K363N . . . HADH 3033 broad.mit.edu 36 4 109150418 109150418 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184705 exon2 c.C187T p.L63L . . . AGXT2L1 64850 broad.mit.edu 36 4 109900448 109900448 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146627 exon2 c.T67C p.S23P . . . AGXT2L1 64850 broad.mit.edu 36 4 109900886 109900886 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146590 exon2 c.T82C p.S28P . . . HS3ST1 9957 broad.mit.edu 36 4 11009869 11009869 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005114 exon2 c.G859A p.E287K . . . COL25A1 84570 broad.mit.edu 36 4 110442489 110442489 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198721 exon2 c.G136A p.V46M . . . SEC24B 10427 broad.mit.edu 36 4 110666862 110666862 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006323 exon17 c.C2823A p.F941L . . . CASP6 839 broad.mit.edu 36 4 110830078 110830078 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001226 exon7 c.G739T p.E247X . . . RRH 10692 broad.mit.edu 36 4 110968640 110968640 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006583 exon1 c.G8T p.R3I . . . RRH 10692 broad.mit.edu 36 4 110973912 110973912 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006583 exon2 c.A275C p.K92T . . . LRIT3 345193 broad.mit.edu 36 4 111008329 111008329 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198506 exon2 c.C538A p.L180I . . . LRIT3 345193 broad.mit.edu 36 4 111010616 111010616 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198506 exon3 c.C1127A p.S376Y . . . ENPEP 2028 broad.mit.edu 36 4 111660903 111660903 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001977 exon10 c.G1659T p.K553N . . . NEUROG2 63973 broad.mit.edu 36 4 113655613 113655613 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024019 exon2 c.C468T p.F156F . . . C4orf21 55345 broad.mit.edu 36 4 113746689 113746689 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018392 exon9 c.C2726A p.S909Y . . . ANK2 287 broad.mit.edu 36 4 114415187 114415187 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020977 exon15 c.G1616A p.R539Q . . . ANK2 287 broad.mit.edu 36 4 114493967 114493967 + Missense_Mutation SNP C T T rs35249198 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001148 exon38 c.C4744T p.R1582W . . . ANK2 287 broad.mit.edu 36 4 114494725 114494725 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001148 exon38 c.C5502A p.S1834S . . . ANK2 287 broad.mit.edu 36 4 114510258 114510258 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020977 exon42 c.C5203T p.R1735W . . . CAMK2D 817 broad.mit.edu 36 4 114689322 114689322 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172115 exon6 c.G354T p.Q118H . . . ARSJ 79642 broad.mit.edu 36 4 115043841 115043841 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024590 exon2 c.G838A p.E280K . . . ARSJ 79642 broad.mit.edu 36 4 115043966 115043966 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024590 exon2 c.C713T p.S238F . . . UGT8 7368 broad.mit.edu 36 4 115763789 115763789 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001128174 exon2 c.G304A p.E102K . . . UGT8 7368 broad.mit.edu 36 4 115816856 115816856 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128174 exon6 c.G1589T p.R530I . . . METTL14 57721 broad.mit.edu 36 4 119850684 119850684 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020961 exon11 c.T1150C p.Y384H . . . MYOZ2 51778 broad.mit.edu 36 4 120304864 120304864 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016599 exon5 c.G427A p.A143T . . . USP53 54532 broad.mit.edu 36 4 120385968 120385968 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019050 exon5 c.G173A p.R58Q . . . FABP2 2169 broad.mit.edu 36 4 120460183 120460183 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000134 exon3 c.G304A p.E102K . . . PDE5A 8654 broad.mit.edu 36 4 120646525 120646525 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033437 exon17 c.G2044T p.E682X . . . PDE5A 8654 broad.mit.edu 36 4 120648266 120648266 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033437 exon16 c.G1974T p.K658N . . . PDE5A 8654 broad.mit.edu 36 4 120683177 120683177 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033437 exon10 c.G1301A p.R434Q . . . PRDM5 11107 broad.mit.edu 36 4 121917874 121917874 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018699 exon13 c.G1456T p.E486X . . . C4orf31 79625 broad.mit.edu 36 4 122178058 122178058 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024574 exon4 c.A518G p.Y173C . . . C4orf31 79625 broad.mit.edu 36 4 122186275 122186275 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024574 exon2 c.C168A p.L56L . . . TNIP3 79931 broad.mit.edu 36 4 122299309 122299309 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128843 exon5 c.G196T p.E66X . . . QRFPR 84109 broad.mit.edu 36 4 122473455 122473455 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198179 exon4 c.T768G p.I256M . . . QRFPR 84109 broad.mit.edu 36 4 122477432 122477432 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198179 exon3 c.T541C p.W181R . . . BBS7 55212 broad.mit.edu 36 4 122966480 122966480 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176824 exon19 c.C2133A p.F711L . . . BBS7 55212 broad.mit.edu 36 4 122968790 122968790 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176824 exon18 c.G1975T p.E659X . . . BBS7 55212 broad.mit.edu 36 4 122975773 122975773 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176824 exon14 c.G1487T p.R496I . . . BBS7 55212 broad.mit.edu 36 4 122989468 122989468 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_176824 exon9 c.C915T p.I305I . . . TRPC3 7222 broad.mit.edu 36 4 123023010 123023010 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003305 exon10 c.C2353T p.R785W . . . KIAA1109 84162 broad.mit.edu 36 4 123337852 123337852 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon11 c.A1261C p.N421H . . . KIAA1109 84162 broad.mit.edu 36 4 123349933 123349933 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon16 c.C1922A p.T641N . . . KIAA1109 84162 broad.mit.edu 36 4 123351634 123351634 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon18 c.G2181T p.M727I . . . KIAA1109 84162 broad.mit.edu 36 4 123367386 123367386 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon22 c.G2868A p.P956P . . . KIAA1109 84162 broad.mit.edu 36 4 123387813 123387813 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon33 c.A5363C p.N1788T . . . KIAA1109 84162 broad.mit.edu 36 4 123390133 123390133 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon34 c.C5556A p.S1852S . . . KIAA1109 84162 broad.mit.edu 36 4 123395423 123395423 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon37 c.T6088G p.L2030V . . . KIAA1109 84162 broad.mit.edu 36 4 123412257 123412257 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon45 c.C8128T p.L2710F . . . KIAA1109 84162 broad.mit.edu 36 4 123468962 123468962 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015312 exon64 c.C11249T p.S3750L . . . IL2 3558 broad.mit.edu 36 4 123594388 123594388 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000586 exon3 c.C278T p.A93V . . . BBS12 166379 broad.mit.edu 36 4 123883022 123883022 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178007 exon3 c.T525C p.G175G . . . SPATA5 166378 broad.mit.edu 36 4 124197855 124197855 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145207 exon13 c.C2175A p.F725L . . . SPRY1 10252 broad.mit.edu 36 4 124542369 124542369 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005841 exon2 c.C173T p.S58L . . . SPRY1 10252 broad.mit.edu 36 4 124542958 124542958 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005841 exon2 c.C762T p.C254C . . . ANKRD50 57182 broad.mit.edu 36 4 125809603 125809603 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167882 exon3 c.A3742G p.T1248A . . . FAT4 79633 broad.mit.edu 36 4 126458261 126458261 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024582 exon1 c.G1245A p.P415P . . . FAT4 79633 broad.mit.edu 36 4 126459037 126459037 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024582 exon1 c.G2021A p.R674H . . . FAT4 79633 broad.mit.edu 36 4 126460344 126460344 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024582 exon1 c.G3328A p.E1110K . . . FAT4 79633 broad.mit.edu 36 4 126556208 126556208 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024582 exon5 c.G6640A p.A2214T . . . FAT4 79633 broad.mit.edu 36 4 126575030 126575030 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024582 exon7 c.G7199T p.R2400M . . . FAT4 79633 broad.mit.edu 36 4 126586964 126586964 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024582 exon8 c.C7260T p.S2420S . . . FAT4 79633 broad.mit.edu 36 4 126589245 126589245 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024582 exon9 c.G7624T p.D2542Y . . . FAT4 79633 broad.mit.edu 36 4 126590981 126590981 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024582 exon9 c.G9360T p.M3120I . . . FAT4 79633 broad.mit.edu 36 4 126609235 126609235 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024582 exon11 c.A12018C p.K4006N . . . FAT4 79633 broad.mit.edu 36 4 126627980 126627980 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024582 exon16 c.G12847A p.D4283N . . . INTU 27152 broad.mit.edu 36 4 128854546 128854546 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015693 exon15 c.G2565T p.K855N . . . SLC25A31 83447 broad.mit.edu 36 4 128871266 128871266 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031291 exon1 c.C116T p.A39V . . . SLC25A31 83447 broad.mit.edu 36 4 128909390 128909390 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031291 exon5 c.C667A p.L223I . . . HSPA4L 22824 broad.mit.edu 36 4 128923196 128923196 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014278 exon1 c.A41G p.Y14C . . . HSPA4L 22824 broad.mit.edu 36 4 128939275 128939275 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014278 exon4 c.A390G p.E130E . . . PLK4 10733 broad.mit.edu 36 4 129022498 129022498 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190799 exon2 c.C93A p.S31S . . . PLK4 10733 broad.mit.edu 36 4 129032990 129032990 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190801 exon10 c.C1936A p.Q646K . . . PLK4 10733 broad.mit.edu 36 4 129035611 129035611 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190801 exon14 c.C2493A p.I831I . . . C4orf29 80167 broad.mit.edu 36 4 129171221 129171221 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039717 exon11 c.C1185T p.I395I . . . LARP1B 55132 broad.mit.edu 36 4 129218486 129218486 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178043 exon4 c.G136T p.E46X . . . LARP1B 55132 broad.mit.edu 36 4 129247782 129247782 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178043 exon9 c.G852T p.E284D . . . LARP1B 55132 broad.mit.edu 36 4 129341158 129341158 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018078 exon17 c.G2197T p.E733X . . . PHF17 79960 broad.mit.edu 36 4 129983588 129983588 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199320 exon3 c.G83A p.R28Q . . . RAB28 9364 broad.mit.edu 36 4 13071506 13071506 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001017979 exon4 c.G306T p.E102D . . . BOD1L 259282 broad.mit.edu 36 4 13210304 13210304 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon10 c.G7318A p.E2440K . . . BOD1L 259282 broad.mit.edu 36 4 13211656 13211656 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon10 c.G5966A p.S1989N . . . BOD1L 259282 broad.mit.edu 36 4 13213600 13213600 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon10 c.G4022T p.S1341I . . . BOD1L 259282 broad.mit.edu 36 4 13213835 13213835 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon10 c.G3787T p.E1263X . . . BOD1L 259282 broad.mit.edu 36 4 13214904 13214904 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon10 c.G2718T p.E906D . . . BOD1L 259282 broad.mit.edu 36 4 13215560 13215560 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon10 c.G2062A p.E688K . . . BOD1L 259282 broad.mit.edu 36 4 13215683 13215683 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon10 c.G1939T p.E647X . . . BOD1L 259282 broad.mit.edu 36 4 13221801 13221801 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148894 exon6 c.A1346T p.N449I . . . PCDH10 57575 broad.mit.edu 36 4 134292601 134292601 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032961 exon1 c.G1856T p.S619I . . . PCDH18 54510 broad.mit.edu 36 4 138661861 138661861 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019035 exon4 c.G3180A p.T1060T . . . PCDH18 54510 broad.mit.edu 36 4 138670242 138670242 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019035 exon1 c.C2451A p.F817L . . . PCDH18 54510 broad.mit.edu 36 4 138672168 138672168 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019035 exon1 c.G525A p.S175S . . . SLC7A11 23657 broad.mit.edu 36 4 139319869 139319869 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014331 exon11 c.C1396A p.L466I . . . ELF2 1998 broad.mit.edu 36 4 140201206 140201206 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006874 exon6 c.G699A p.P233P . . . ELF2 1998 broad.mit.edu 36 4 140212542 140212542 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006874 exon3 c.G274T p.E92X . . . RAB33B 83452 broad.mit.edu 36 4 140613420 140613420 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031296 exon2 c.C380A p.S127Y . . . SETD7 80854 broad.mit.edu 36 4 140673897 140673897 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030648 exon3 c.C244A p.L82I . . . CLGN 1047 broad.mit.edu 36 4 141529854 141529854 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004362 exon15 c.C1807T p.R603C . . . TBC1D9 23158 broad.mit.edu 36 4 141774671 141774671 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015130 exon16 c.C2627T p.A876V . . . RNF150 57484 broad.mit.edu 36 4 142108255 142108255 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020724 exon2 c.G707A p.R236Q . . . ZNF330 27309 broad.mit.edu 36 4 142367437 142367437 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014487 exon5 c.G278A p.G93D . . . INPP4B 8821 broad.mit.edu 36 4 143378554 143378554 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003866 exon13 c.G749A p.R250Q . . . INPP4B 8821 broad.mit.edu 36 4 143401133 143401133 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003866 exon12 c.G650T p.S217I . . . SMARCA5 8467 broad.mit.edu 36 4 144665050 144665050 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003601 exon4 c.G500A p.R167Q . . . SMARCA5 8467 broad.mit.edu 36 4 144675483 144675483 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003601 exon10 c.G1184A p.R395Q . . . SMARCA5 8467 broad.mit.edu 36 4 144687401 144687401 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003601 exon20 c.G2543T p.R848I . . . SMARCA5 8467 broad.mit.edu 36 4 144687493 144687493 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003601 exon20 c.G2635T p.E879X . . . GYPB 2994 broad.mit.edu 36 4 145141813 145141813 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002100 exon2 c.G111T p.K37N . . . HHIP 64399 broad.mit.edu 36 4 145793211 145793211 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022475 exon2 c.T284G p.F95C . . . MMAA 166785 broad.mit.edu 36 4 146783034 146783034 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172250 exon3 c.G509T p.R170I . . . MMAA 166785 broad.mit.edu 36 4 146791713 146791713 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172250 exon5 c.T783G p.V261V . . . MMAA 166785 broad.mit.edu 36 4 146795755 146795755 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172250 exon7 c.C976T p.R326C . . . ZNF827 152485 broad.mit.edu 36 4 147026461 147026461 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178835 exon4 c.G1566T p.V522V . . . TTC29 83894 broad.mit.edu 36 4 147960794 147960794 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031956 exon10 c.G1034T p.R345I . . . TTC29 83894 broad.mit.edu 36 4 148049807 148049807 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031956 exon5 c.G221A p.R74Q . . . TMEM184C 55751 broad.mit.edu 36 4 148765426 148765426 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018241 exon4 c.G313A p.G105R . . . ARHGAP10 79658 broad.mit.edu 36 4 149007333 149007333 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024605 exon7 c.G618A p.G206G . . . ARHGAP10 79658 broad.mit.edu 36 4 149015723 149015723 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024605 exon8 c.C804T p.A268A . . . NR3C2 4306 broad.mit.edu 36 4 149400708 149400708 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166104 exon3 c.G1769A p.R590Q . . . CC2D2A 57545 broad.mit.edu 36 4 15127369 15127369 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080522 exon12 c.C1041T p.D347D . . . DCLK2 166614 broad.mit.edu 36 4 151373293 151373293 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040260 exon10 c.C1429A p.L477I . . . DCLK2 166614 broad.mit.edu 36 4 151380372 151380372 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040260 exon11 c.C1595A p.S532Y . . . LRBA 987 broad.mit.edu 36 4 151608279 151608279 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006726 exon45 c.C6809T p.S2270F . . . LRBA 987 broad.mit.edu 36 4 151628396 151628396 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006726 exon43 c.G6522T p.K2174N . . . LRBA 987 broad.mit.edu 36 4 151631568 151631568 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006726 exon42 c.C6433T p.R2145C . . . LRBA 987 broad.mit.edu 36 4 151992852 151992852 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006726 exon23 c.T3460G p.L1154V . . . LRBA 987 broad.mit.edu 36 4 151993544 151993544 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_006726 exon23 c.T2768C p.V923A . . . LRBA 987 broad.mit.edu 36 4 152049432 152049432 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006726 exon10 c.G1189A p.D397N . . . PRSS48 345062 broad.mit.edu 36 4 152420427 152420427 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_183375 exon2 c.G82A p.V28I . . . PRSS48 345062 broad.mit.edu 36 4 152422949 152422949 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_183375 exon3 c.A415G p.T139A . . . FBXL5 26234 broad.mit.edu 36 4 15247253 15247253 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012161 exon5 c.C728T p.S243L . . . PET112L 5188 broad.mit.edu 36 4 152901414 152901414 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004564 exon1 c.G171T p.R57S . . . FBXW7 55294 broad.mit.edu 36 4 153463635 153463635 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018315 exon11 c.C1732T p.R578X FBXW7,endometrium,NS,Substitution - Nonsense,0 . . FBXW7 55294 broad.mit.edu 36 4 153487543 153487543 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018315 exon3 c.A475C p.K159Q . . . FBXW7 55294 broad.mit.edu 36 4 153490692 153490692 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018315 exon2 c.G296A p.R99H . . . FBXW7 55294 broad.mit.edu 36 4 153493321 153493321 + Intron SNP C T T rs34496200 by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018315 exon1 c.G12A p.P4P . . . TIGD4 201798 broad.mit.edu 36 4 153910462 153910462 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145720 exon2 c.C1145A p.S382Y . . . TIGD4 201798 broad.mit.edu 36 4 153911321 153911321 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145720 exon2 c.C286T p.R96X . . . TIGD4 201798 broad.mit.edu 36 4 153911525 153911525 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145720 exon2 c.G82A p.D28N . . . FHDC1 85462 broad.mit.edu 36 4 154083990 154083990 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033393 exon1 c.C331T p.R111X . . . FHDC1 85462 broad.mit.edu 36 4 154113082 154113082 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033393 exon10 c.A1322C p.K441T . . . TRIM2 23321 broad.mit.edu 36 4 154436216 154436216 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015271 exon6 c.G1088A p.R363Q . . . CD38 952 broad.mit.edu 36 4 15448877 15448877 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001775 exon5 c.A650G p.D217G . . . CD38 952 broad.mit.edu 36 4 15459320 15459320 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001775 exon8 c.C900A p.I300I . . . KIAA0922 23240 broad.mit.edu 36 4 154734456 154734456 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015196 exon19 c.G1975A p.E659K . . . KIAA0922 23240 broad.mit.edu 36 4 154742879 154742879 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015196 exon22 c.G2389A p.E797K . . . KIAA0922 23240 broad.mit.edu 36 4 154752996 154752996 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015196 exon26 c.C3558T p.F1186F . . . KIAA0922 23240 broad.mit.edu 36 4 154774860 154774860 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015196 exon33 c.C4392T p.N1464N . . . KIAA0922 23240 broad.mit.edu 36 4 154777126 154777126 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015196 exon35 c.G4778A p.R1593K . . . TLR2 7097 broad.mit.edu 36 4 154844356 154844356 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003264 exon3 c.G847T p.E283X . . . TLR2 7097 broad.mit.edu 36 4 154844759 154844759 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003264 exon3 c.A1250G p.N417S . . . TLR2 7097 broad.mit.edu 36 4 154845591 154845591 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003264 exon3 c.A2082C p.E694D . . . RNF175 285533 broad.mit.edu 36 4 154856153 154856153 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_173662 exon7 c.T742G p.Y248D . . . SFRP2 6423 broad.mit.edu 36 4 154929339 154929339 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003013 exon1 c.C99A p.F33L . . . DCHS2 54798 broad.mit.edu 36 4 155375542 155375542 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017639 exon25 c.C8347A p.L2783I . . . DCHS2 54798 broad.mit.edu 36 4 155375907 155375907 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017639 exon25 c.G7982T p.R2661I . . . DCHS2 54798 broad.mit.edu 36 4 155376132 155376132 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017639 exon25 c.G7757T p.R2586I . . . DCHS2 54798 broad.mit.edu 36 4 155438837 155438837 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017639 exon18 c.T4714C p.Y1572H . . . DCHS2 54798 broad.mit.edu 36 4 155439278 155439278 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017639 exon18 c.G4273T p.E1425X . . . DCHS2 54798 broad.mit.edu 36 4 155497871 155497871 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017639 exon6 c.G750T p.K250N . . . PLRG1 5356 broad.mit.edu 36 4 155677290 155677290 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002669 exon15 c.T1542G p.F514L . . . PLRG1 5356 broad.mit.edu 36 4 155678678 155678678 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002669 exon13 c.T1184C p.I395T . . . PLRG1 5356 broad.mit.edu 36 4 155681398 155681398 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002669 exon9 c.G826A p.E276K . . . FGB 2244 broad.mit.edu 36 4 155708299 155708299 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005141 exon4 c.C595T p.R199C . . . FGA 2243 broad.mit.edu 36 4 155726575 155726575 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021871 exon5 c.G1456A p.E486K . . . RBM46 166863 broad.mit.edu 36 4 155938533 155938533 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144979 exon3 c.G272A p.R91Q . . . RBM46 166863 broad.mit.edu 36 4 155939578 155939578 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144979 exon4 c.G814T p.D272Y . . . PROM1 8842 broad.mit.edu 36 4 15619720 15619720 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001145849 exon11 c.A1251C p.E417D . . . NPY2R 4887 broad.mit.edu 36 4 156355480 156355480 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000910 exon2 c.C939T p.I313I . . . GUCY1A3 2982 broad.mit.edu 36 4 156837654 156837654 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130682 exon3 c.G185T p.R62I . . . GUCY1A3 2982 broad.mit.edu 36 4 156851619 156851619 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130682 exon6 c.G852T p.K284N . . . GUCY1A3 2982 broad.mit.edu 36 4 156851731 156851731 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130682 exon6 c.G964T p.E322X . . . GUCY1A3 2982 broad.mit.edu 36 4 156853829 156853829 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130682 exon7 c.C1216T p.H406Y . . . GUCY1B3 2983 broad.mit.edu 36 4 156934535 156934535 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000857 exon6 c.T573G p.F191L . . . ACCN5 51802 broad.mit.edu 36 4 156977320 156977320 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017419 exon8 c.G1206T p.K402N . . . ACCN5 51802 broad.mit.edu 36 4 157004322 157004322 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017419 exon2 c.G75T p.K25N . . . TDO2 6999 broad.mit.edu 36 4 157044687 157044687 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005651 exon2 c.G103A p.A35T . . . TDO2 6999 broad.mit.edu 36 4 157050687 157050687 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005651 exon6 c.G492T p.K164N . . . CTSO 1519 broad.mit.edu 36 4 157070144 157070144 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001334 exon6 c.G838A p.G280R . . . CTSO 1519 broad.mit.edu 36 4 157083847 157083847 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001334 exon2 c.G155A p.R52Q . . . PDGFC 56034 broad.mit.edu 36 4 157913340 157913340 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016205 exon4 c.G651A p.R217R . . . PDGFC 56034 broad.mit.edu 36 4 157990994 157990994 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016205 exon2 c.G143A p.R48K . . . GRIA2 2891 broad.mit.edu 36 4 158362333 158362333 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001083620 exon2 c.T12G p.F4L . . . GRIA2 2891 broad.mit.edu 36 4 158476472 158476472 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001083620 exon10 c.T1325C p.V442A . . . TMEM144 55314 broad.mit.edu 36 4 159384943 159384943 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018342 exon12 c.G946T p.E316X . . . RXFP1 59350 broad.mit.edu 36 4 159752952 159752952 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021634 exon8 c.C668A p.S223Y . . . RXFP1 59350 broad.mit.edu 36 4 159769282 159769282 + Silent SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_021634 exon11 c.T870A p.T290T . . . RXFP1 59350 broad.mit.edu 36 4 159787475 159787475 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021634 exon16 c.G1428A p.A476A . . . C4orf45 152940 broad.mit.edu 36 4 160055867 160055867 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152543 exon4 c.A451C p.N151H . . . RAPGEF2 9693 broad.mit.edu 36 4 160445050 160445050 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014247 exon2 c.G167T p.S56I . . . RAPGEF2 9693 broad.mit.edu 36 4 160471059 160471059 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014247 exon7 c.A943C p.K315Q . . . RAPGEF2 9693 broad.mit.edu 36 4 160473259 160473259 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014247 exon11 c.G1612A p.D538N . . . RAPGEF2 9693 broad.mit.edu 36 4 160493377 160493377 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014247 exon21 c.C3473T p.S1158L . . . FSTL5 56884 broad.mit.edu 36 4 162527038 162527038 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020116 exon16 c.C1855A p.L619I . . . FSTL5 56884 broad.mit.edu 36 4 162796978 162796978 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020116 exon7 c.G846A p.W282X . . . FSTL5 56884 broad.mit.edu 36 4 162797079 162797079 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020116 exon7 c.C745T p.L249L . . . LDB2 9079 broad.mit.edu 36 4 16369885 16369885 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130834 exon2 c.C229T p.R77X . . . NAF1 92345 broad.mit.edu 36 4 164289018 164289018 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138386 exon3 c.G559T p.E187X . . . NPY5R 4889 broad.mit.edu 36 4 164491275 164491275 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006174 exon4 c.T400A p.S134T . . . TKTL2 84076 broad.mit.edu 36 4 164613788 164613788 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032136 exon1 c.C549T p.F183F . . . MARCH1 55016 broad.mit.edu 36 4 164669541 164669541 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017923 exon4 c.C628T p.R210C . . . TRIM60 166655 broad.mit.edu 36 4 166181645 166181645 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152620 exon3 c.G971A p.R324Q . . . TRIM60 166655 broad.mit.edu 36 4 166182030 166182030 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152620 exon3 c.C1356A p.F452L . . . KLHL2 11275 broad.mit.edu 36 4 166360651 166360651 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001161521 exon2 c.G154A p.E52K . . . SC4MOL 6307 broad.mit.edu 36 4 166474161 166474161 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006745 exon2 c.C189A p.F63L . . . CPE 1363 broad.mit.edu 36 4 166625134 166625134 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001873 exon5 c.C901T p.R301C . . . TLL1 7092 broad.mit.edu 36 4 167148612 167148612 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012464 exon7 c.C879T p.F293F . . . TLL1 7092 broad.mit.edu 36 4 167179960 167179960 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012464 exon10 c.C1178T p.T393M . . . SPOCK3 50859 broad.mit.edu 36 4 167892793 167892793 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016950 exon12 c.G1165T p.D389Y . . . SPOCK3 50859 broad.mit.edu 36 4 168070358 168070358 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016950 exon6 c.C471A p.T157T . . . DDX60 55601 broad.mit.edu 36 4 169395061 169395061 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017631 exon32 c.T4362C p.S1454S . . . DDX60 55601 broad.mit.edu 36 4 169408805 169408805 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017631 exon28 c.A3733C p.K1245Q . . . DDX60 55601 broad.mit.edu 36 4 169413479 169413479 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017631 exon26 c.A3515C p.K1172T . . . DDX60 55601 broad.mit.edu 36 4 169438072 169438072 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017631 exon14 c.G1967A p.R656Q . . . DDX60 55601 broad.mit.edu 36 4 169464257 169464257 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017631 exon5 c.G454A p.D152N . . . DDX60L 91351 broad.mit.edu 36 4 169531500 169531500 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012967 exon35 c.C4668T p.L1556L . . . DDX60L 91351 broad.mit.edu 36 4 169537500 169537500 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001012967 exon31 c.G4173A p.E1391E . . . DDX60L 91351 broad.mit.edu 36 4 169553690 169553690 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001012967 exon27 c.G3652T p.D1218Y . . . DDX60L 91351 broad.mit.edu 36 4 169573400 169573400 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012967 exon21 c.C2852A p.S951X . . . DDX60L 91351 broad.mit.edu 36 4 169577067 169577067 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001012967 exon19 c.A2571C p.Q857H . . . PALLD 23022 broad.mit.edu 36 4 169869577 169869577 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016081 exon10 c.A1892C p.K631T . . . PALLD 23022 broad.mit.edu 36 4 170048748 170048748 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016081 exon11 c.C2065T p.R689C . . . SH3RF1 57630 broad.mit.edu 36 4 170275450 170275450 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020870 exon9 c.C1576T p.R526W . . . CLCN3 1182 broad.mit.edu 36 4 170875545 170875545 + Missense_Mutation SNP G T T rs34564682 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173872 exon13 c.G2394T p.K798N . . . MFAP3L 9848 broad.mit.edu 36 4 171149107 171149107 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021647 exon3 c.C1227A p.V409V . . . CLRN2 645104 broad.mit.edu 36 4 17137801 17137801 + Nonstop_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001079827 exon3 c.T697G p.X233E . . . LAP3 51056 broad.mit.edu 36 4 17209248 17209248 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015907 exon10 c.G1149A p.P383P . . . LAP3 51056 broad.mit.edu 36 4 17218287 17218287 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015907 exon13 c.C1537T p.R513C . . . GALNT7 51809 broad.mit.edu 36 4 174475372 174475372 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017423 exon10 c.G1621A p.E541K . . . SAP30 8819 broad.mit.edu 36 4 174531168 174531168 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003864 exon2 c.G368A p.R123Q . . . KIAA1712 80817 broad.mit.edu 36 4 175467655 175467655 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040157 exon8 c.C758T p.S253L . . . GPM6A 2823 broad.mit.edu 36 4 176970364 176970364 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201591 exon1 c.G9T p.E3D . . . WDR17 116966 broad.mit.edu 36 4 177286903 177286903 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181265 exon6 c.C811T p.R271C . . . WDR17 116966 broad.mit.edu 36 4 177330603 177330603 + Nonsense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181265 exon24 c.T3186G p.Y1062X . . . WDR17 116966 broad.mit.edu 36 4 177335219 177335219 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181265 exon27 c.C3466T p.R1156W . . . WDR17 116966 broad.mit.edu 36 4 177335280 177335280 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_181265 exon27 c.C3527T p.A1176V . . . SPATA4 132851 broad.mit.edu 36 4 177342934 177342934 + Missense_Mutation SNP C A A rs73005175 by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144644 exon6 c.G909T p.K303N . . . SPATA4 132851 broad.mit.edu 36 4 177351148 177351148 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144644 exon3 c.C422T p.P141L . . . ASB5 140458 broad.mit.edu 36 4 177375086 177375086 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080874 exon6 c.G739A p.E247K . . . SPCS3 60559 broad.mit.edu 36 4 177485406 177485406 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021928 exon4 c.G394A p.D132N . . . VEGFC 7424 broad.mit.edu 36 4 177845996 177845996 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_005429 exon5 c.T784G p.F262V . . . NEIL3 55247 broad.mit.edu 36 4 178493947 178493947 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018248 exon3 c.C390A p.F130L . . . AGA 175 broad.mit.edu 36 4 178596946 178596946 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171988 exon4 c.C454A p.Q152K . . . ODZ3 55714 broad.mit.edu 36 4 183505044 183505044 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080477 exon2 c.C479T p.T160M . . . ODZ3 55714 broad.mit.edu 36 4 183831196 183831196 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080477 exon6 c.G1156A p.G386R . . . ODZ3 55714 broad.mit.edu 36 4 183901504 183901504 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080477 exon18 c.C3567T p.G1189G . . . ODZ3 55714 broad.mit.edu 36 4 183912637 183912637 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080477 exon21 c.C4123T p.R1375C . . . ODZ3 55714 broad.mit.edu 36 4 183947487 183947487 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080477 exon24 c.C5552T p.S1851F . . . ODZ3 55714 broad.mit.edu 36 4 183950462 183950462 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080477 exon25 c.C5643T p.F1881F . . . WWC2 80014 broad.mit.edu 36 4 184444120 184444120 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024949 exon20 c.C3055T p.R1019W . . . WWC2 80014 broad.mit.edu 36 4 184470550 184470550 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024949 exon22 c.C3447A p.V1149V . . . ING2 3622 broad.mit.edu 36 4 184668458 184668458 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001564 exon2 c.G202A p.E68K . . . ENPP6 133121 broad.mit.edu 36 4 185255478 185255478 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153343 exon7 c.G1031A p.G344D . . . CASP3 836 broad.mit.edu 36 4 185789968 185789968 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032991 exon5 c.T428C p.F143S . . . CCDC111 201973 broad.mit.edu 36 4 185819929 185819929 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152683 exon5 c.C286A p.L96I . . . MLF1IP 79682 broad.mit.edu 36 4 185853493 185853493 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024629 exon13 c.C1200T p.A400A . . . SNX25 83891 broad.mit.edu 36 4 186478884 186478884 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031953 exon8 c.C856A p.L286I . . . ANKRD37 353322 broad.mit.edu 36 4 186557754 186557754 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181726 exon4 c.C309T p.L103L . . . SORBS2 8470 broad.mit.edu 36 4 186785021 186785021 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145672 exon13 c.C1145A p.S382Y . . . SORBS2 8470 broad.mit.edu 36 4 186804884 186804884 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145672 exon10 c.C823T p.R275W . . . TLR3 7098 broad.mit.edu 36 4 187241170 187241170 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003265 exon4 c.G1336T p.E446X . . . TLR3 7098 broad.mit.edu 36 4 187242905 187242905 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003265 exon5 c.C2599T p.R867X . . . FAM149A 25854 broad.mit.edu 36 4 187323603 187323603 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001006655 exon10 c.C1155T p.R385R . . . CYP4V2 285440 broad.mit.edu 36 4 187355738 187355738 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207352 exon5 c.G662A p.R221H . . . CYP4V2 285440 broad.mit.edu 36 4 187357124 187357124 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207352 exon6 c.C694T p.R232X . . . KLKB1 3818 broad.mit.edu 36 4 187392152 187392152 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000892 exon4 c.C274T p.R92X . . . KLKB1 3818 broad.mit.edu 36 4 187409746 187409746 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000892 exon9 c.G980A p.R327H . . . FAT1 2195 broad.mit.edu 36 4 187755080 187755080 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon25 c.G12608A p.R4203H . . . FAT1 2195 broad.mit.edu 36 4 187755144 187755144 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon25 c.G12544T p.G4182X . . . FAT1 2195 broad.mit.edu 36 4 187776049 187776049 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon10 c.G8685T p.K2895N . . . FAT1 2195 broad.mit.edu 36 4 187776774 187776774 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon10 c.G7960A p.V2654I . . . FAT1 2195 broad.mit.edu 36 4 187779021 187779021 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon10 c.G5713T p.D1905Y . . . FAT1 2195 broad.mit.edu 36 4 187779145 187779145 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon10 c.G5589A p.A1863A . . . FAT1 2195 broad.mit.edu 36 4 187865901 187865901 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon2 c.A2075C p.K692T . . . FAT1 2195 broad.mit.edu 36 4 187867132 187867132 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005245 exon2 c.G844A p.D282N . . . TRIML2 205860 broad.mit.edu 36 4 189249773 189249773 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173553 exon7 c.C912A p.V304V . . . TRIML2 205860 broad.mit.edu 36 4 189259314 189259314 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173553 exon3 c.C220A p.L74I . . . TRIML1 339976 broad.mit.edu 36 4 189300619 189300619 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178556 exon3 c.G724A p.E242K . . . FRG2 448831 broad.mit.edu 36 4 191185276 191185276 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199232 exon1 c.G78T p.Q26H . . . WHSC1 7468 broad.mit.edu 36 4 1922651 1922651 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133331 exon11 c.G1936A p.E646K . . . SLIT2 9353 broad.mit.edu 36 4 20179597 20179597 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004787 exon29 c.C2960T p.A987V . . . SLIT2 9353 broad.mit.edu 36 4 20220876 20220876 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004787 exon34 c.C3835A p.L1279I . . . POLN 353497 broad.mit.edu 36 4 2179793 2179793 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181808 exon3 c.A433C p.N145H . . . GPR125 166647 broad.mit.edu 36 4 22024060 22024060 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145290 exon14 c.G2075A p.R692Q . . . GPR125 166647 broad.mit.edu 36 4 22072521 22072521 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145290 exon3 c.G338A p.R113Q . . . HAUS3 79441 broad.mit.edu 36 4 2210259 2210259 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024511 exon3 c.A1219C p.N407H . . . HAUS3 79441 broad.mit.edu 36 4 2212282 2212282 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024511 exon2 c.C190A p.L64I . . . DHX15 1665 broad.mit.edu 36 4 24143768 24143768 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001358 exon12 c.A1917C p.E639D . . . DHX15 1665 broad.mit.edu 36 4 24165516 24165516 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001358 exon5 c.G1010A p.R337Q . . . LGI2 55203 broad.mit.edu 36 4 24623134 24623134 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018176 exon7 c.G741A p.A247A . . . LGI2 55203 broad.mit.edu 36 4 24628877 24628877 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018176 exon6 c.G487T p.D163Y . . . SEPSECS 51091 broad.mit.edu 36 4 24734763 24734763 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016955 exon11 c.G1394A p.R465Q . . . SEPSECS 51091 broad.mit.edu 36 4 24737989 24737989 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016955 exon9 c.C1115A p.S372Y . . . SEPSECS 51091 broad.mit.edu 36 4 24765767 24765767 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016955 exon5 c.C652A p.L218M . . . PI4K2B 55300 broad.mit.edu 36 4 24863150 24863150 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018323 exon2 c.C378T p.I126I . . . ZCCHC4 29063 broad.mit.edu 36 4 24924852 24924852 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024936 exon2 c.G214T p.D72Y . . . ANAPC4 29945 broad.mit.edu 36 4 25013731 25013731 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013367 exon17 c.C1255T p.R419W . . . ANAPC4 29945 broad.mit.edu 36 4 25025214 25025214 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_013367 exon24 c.T1714A p.F572I . . . ANAPC4 29945 broad.mit.edu 36 4 25027258 25027258 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013367 exon27 c.C2015A p.S672Y . . . SEL1L3 23231 broad.mit.edu 36 4 25399037 25399037 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015187 exon13 c.G2124T p.K708N . . . RBPJ 3516 broad.mit.edu 36 4 26031365 26031365 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203284 exon6 c.A413G p.D138G . . . RBPJ 3516 broad.mit.edu 36 4 26035423 26035423 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203284 exon8 c.A704C p.K235T . . . CCKAR 886 broad.mit.edu 36 4 26096410 26096410 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000730 exon3 c.G573T p.Q191H . . . FAM193A 8603 broad.mit.edu 36 4 2618348 2618348 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003704 exon5 c.C429T p.V143V . . . STIM2 57620 broad.mit.edu 36 4 26568359 26568359 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001169117 exon3 c.G310T p.D104Y . . . STIM2 57620 broad.mit.edu 36 4 26618277 26618277 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001169117 exon8 c.G1006A p.E336K . . . STIM2 57620 broad.mit.edu 36 4 26628656 26628656 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001169117 exon11 c.G1715A p.R572Q . . . SH3BP2 6452 broad.mit.edu 36 4 2804533 2804533 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145856 exon12 c.G1678A p.E560K . . . MFSD10 10227 broad.mit.edu 36 4 2904138 2904138 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001120 exon4 c.G518A p.R173H . . . NOP14 8602 broad.mit.edu 36 4 2915666 2915666 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003703 exon13 c.T1823G p.F608C . . . NOP14 8602 broad.mit.edu 36 4 2922758 2922758 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003703 exon7 c.C883T p.R295X . . . PCDH7 5099 broad.mit.edu 36 4 30333420 30333420 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032456 exon1 c.G1278T p.K426N . . . HTT 3064 broad.mit.edu 36 4 3058471 3058471 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002111 exon2 c.G271T p.E91X . . . HTT 3064 broad.mit.edu 36 4 3146536 3146536 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002111 exon33 c.G4311A p.T1437T . . . HTT 3064 broad.mit.edu 36 4 3152069 3152069 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002111 exon36 c.G4642A p.D1548N . . . ZNF141 7700 broad.mit.edu 36 4 357454 357454 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003441 exon4 c.C1228T p.R410W . . . ARAP2 116984 broad.mit.edu 36 4 35797702 35797702 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015230 exon24 c.G3928T p.E1310X . . . ARAP2 116984 broad.mit.edu 36 4 35891323 35891323 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015230 exon4 c.G978T p.E326D . . . ARAP2 116984 broad.mit.edu 36 4 35907468 35907468 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015230 exon2 c.A36T p.K12N . . . RELL1 768211 broad.mit.edu 36 4 37325393 37325393 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001085400 exon3 c.A377C p.K126T . . . RELL1 768211 broad.mit.edu 36 4 37327318 37327318 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001085400 exon2 c.C288T p.I96I . . . TLR10 81793 broad.mit.edu 36 4 38451402 38451402 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030956 exon4 c.C2205A p.F735L . . . TLR10 81793 broad.mit.edu 36 4 38451711 38451711 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030956 exon4 c.C1896T p.V632V . . . TLR10 81793 broad.mit.edu 36 4 38453342 38453342 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030956 exon4 c.C265T p.L89F . . . TLR10 81793 broad.mit.edu 36 4 38453593 38453593 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030956 exon4 c.G14T p.R5I . . . TLR1 7096 broad.mit.edu 36 4 38474909 38474909 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003263 exon4 c.G1939A p.D647N . . . TLR1 7096 broad.mit.edu 36 4 38475412 38475412 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003263 exon4 c.C1436A p.S479Y . . . TLR1 7096 broad.mit.edu 36 4 38476103 38476103 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003263 exon4 c.C745A p.L249I . . . FAM114A1 92689 broad.mit.edu 36 4 38556314 38556314 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138389 exon3 c.G220A p.D74N . . . FAM114A1 92689 broad.mit.edu 36 4 38610335 38610335 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138389 exon12 c.C1408A p.L470I . . . KLHL5 51088 broad.mit.edu 36 4 38740873 38740873 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015990 exon1 c.G344A p.R115Q . . . KLHL5 51088 broad.mit.edu 36 4 38754047 38754047 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015990 exon2 c.T589C p.F197L . . . KLHL5 51088 broad.mit.edu 36 4 38764702 38764702 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015990 exon5 c.A1211C p.K404T . . . WDR19 57728 broad.mit.edu 36 4 38932029 38932029 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025132 exon26 c.C2985A p.I995I . . . RFC1 5981 broad.mit.edu 36 4 38967948 38967948 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002913 exon24 c.C3275T p.S1092L . . . RFC1 5981 broad.mit.edu 36 4 38980758 38980758 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002913 exon17 c.G2334T p.Q778H . . . RFC1 5981 broad.mit.edu 36 4 38987042 38987042 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002913 exon13 c.G1494T p.K498N . . . RFC1 5981 broad.mit.edu 36 4 38998639 38998639 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002913 exon9 c.G854T p.R285M . . . RPL9 6133 broad.mit.edu 36 4 39136247 39136247 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000661 exon3 c.A124G p.N42D . . . LIAS 11019 broad.mit.edu 36 4 39138901 39138901 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194451 exon2 c.T142G p.F48V . . . PDS5A 23244 broad.mit.edu 36 4 39544934 39544934 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100399 exon23 c.C2584T p.R862W . . . PDS5A 23244 broad.mit.edu 36 4 39600713 39600713 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100399 exon6 c.C578A p.S193Y . . . N4BP2 55728 broad.mit.edu 36 4 39799265 39799265 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018177 exon9 c.G3139T p.D1047Y . . . N4BP2 55728 broad.mit.edu 36 4 39799462 39799462 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018177 exon9 c.G3336T p.E1112D . . . CHRNA9 55584 broad.mit.edu 36 4 40033991 40033991 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017581 exon3 c.G218T p.R73I . . . CHRNA9 55584 broad.mit.edu 36 4 40051276 40051276 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017581 exon5 c.C1422A p.I474I . . . RBM47 54502 broad.mit.edu 36 4 40135188 40135188 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019027 exon3 c.G480A p.K160K . . . UCHL1 7345 broad.mit.edu 36 4 40964824 40964824 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004181 exon9 c.G649A p.V217M . . . LIMCH1 22998 broad.mit.edu 36 4 41302698 41302698 + 5'UTR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001112717 exon6 c.G406A p.A136T . . . LIMCH1 22998 broad.mit.edu 36 4 41343378 41343378 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001112720 exon6 c.G878A p.R293H . . . LIMCH1 22998 broad.mit.edu 36 4 41343642 41343642 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001112720 exon6 c.C1142A p.S381Y . . . LIMCH1 22998 broad.mit.edu 36 4 41359688 41359688 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001112720 exon9 c.C1568T p.S523L . . . PHOX2B 8929 broad.mit.edu 36 4 41445179 41445179 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003924 exon1 c.C206A p.T69N . . . SLC30A9 10463 broad.mit.edu 36 4 41714902 41714902 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006345 exon3 c.G292T p.E98X . . . SLC30A9 10463 broad.mit.edu 36 4 41775043 41775043 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006345 exon17 c.G1606T p.E536X . . . BEND4 389206 broad.mit.edu 36 4 41840521 41840521 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001159547 exon3 c.T735G p.F245L . . . BEND4 389206 broad.mit.edu 36 4 41840715 41840715 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001159547 exon3 c.C541A p.L181I . . . ATP8A1 10396 broad.mit.edu 36 4 42140433 42140433 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006095 exon33 c.C3029T p.A1010V . . . ATP8A1 10396 broad.mit.edu 36 4 42240731 42240731 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006095 exon20 c.G1682A p.R561H . . . ATP8A1 10396 broad.mit.edu 36 4 42245821 42245821 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006095 exon19 c.A1618C p.R540R . . . ATP8A1 10396 broad.mit.edu 36 4 42247992 42247992 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006095 exon18 c.G1582A p.D528N . . . ATP8A1 10396 broad.mit.edu 36 4 42276625 42276625 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006095 exon11 c.G962A p.R321Q . . . ATP8A1 10396 broad.mit.edu 36 4 42278478 42278478 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006095 exon10 c.C751A p.L251I . . . OTOP1 133060 broad.mit.edu 36 4 4250442 4250442 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_177998 exon5 c.G1020T p.K340N . . . OTOP1 133060 broad.mit.edu 36 4 4250586 4250586 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_177998 exon5 c.C876T p.I292I . . . ZNF721 170960 broad.mit.edu 36 4 425686 425686 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133474 exon3 c.G2570T p.R857I . . . ZNF721 170960 broad.mit.edu 36 4 426441 426441 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_133474 exon3 c.A1815C p.K605N . . . ZNF721 170960 broad.mit.edu 36 4 426526 426526 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133474 exon3 c.G1730T p.R577I . . . GRXCR1 389207 broad.mit.edu 36 4 42727276 42727276 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080476 exon4 c.G835T p.E279X . . . ZNF721 170960 broad.mit.edu 36 4 427366 427366 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133474 exon3 c.G890T p.R297I . . . ZNF721 170960 broad.mit.edu 36 4 427785 427785 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_133474 exon3 c.A471C p.K157N . . . LYAR 55646 broad.mit.edu 36 4 4332096 4332096 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145725 exon6 c.C408A p.I136I . . . GUF1 60558 broad.mit.edu 36 4 44383307 44383307 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021927 exon8 c.C758A p.P253H . . . STX18 53407 broad.mit.edu 36 4 4477832 4477832 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016930 exon8 c.C721T p.R241X . . . GABRA2 2555 broad.mit.edu 36 4 45947288 45947288 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000807 exon10 c.C1150A p.L384I . . . GABRA2 2555 broad.mit.edu 36 4 45958840 45958840 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000807 exon9 c.G919T p.V307L . . . GABRA2 2555 broad.mit.edu 36 4 46029394 46029394 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000807 exon4 c.G250T p.D84Y . . . GABRA4 2557 broad.mit.edu 36 4 46625285 46625285 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000809 exon9 c.G1379A p.R460Q . . . GABRA4 2557 broad.mit.edu 36 4 46689638 46689638 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000809 exon2 c.G169A p.D57N . . . GABRB1 2560 broad.mit.edu 36 4 46858163 46858163 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000812 exon4 c.G381T p.K127N . . . COMMD8 54951 broad.mit.edu 36 4 47153499 47153499 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017845 exon3 c.T227G p.F76C . . . ATP10D 57205 broad.mit.edu 36 4 47254842 47254842 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020453 exon12 c.T2229G p.T743T . . . CORIN 10699 broad.mit.edu 36 4 47376978 47376978 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006587 exon8 c.G1069A p.A357T . . . CNGA1 1259 broad.mit.edu 36 4 47633972 47633972 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000087 exon11 c.G1296T p.K432N . . . CNGA1 1259 broad.mit.edu 36 4 47648203 47648203 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000087 exon5 c.G160T p.E54X . . . TXK 7294 broad.mit.edu 36 4 47807335 47807335 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003328 exon5 c.A423C p.K141N . . . ZAR1 326340 broad.mit.edu 36 4 48189750 48189750 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175619 exon3 c.T1095G p.S365S . . . FRYL 285527 broad.mit.edu 36 4 48196841 48196841 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015030 exon63 c.G8746T p.E2916X . . . FRYL 285527 broad.mit.edu 36 4 48207643 48207643 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015030 exon58 c.C8261T p.S2754L . . . FRYL 285527 broad.mit.edu 36 4 48224785 48224785 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015030 exon52 c.C7100A p.S2367Y . . . FRYL 285527 broad.mit.edu 36 4 48253886 48253886 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015030 exon35 c.G4132A p.D1378N . . . FRYL 285527 broad.mit.edu 36 4 48292428 48292428 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015030 exon15 c.G1184A p.R395Q . . . FRYL 285527 broad.mit.edu 36 4 48331095 48331095 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015030 exon4 c.G90T p.K30N . . . OCIAD1 54940 broad.mit.edu 36 4 48548753 48548753 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079841 exon7 c.G551T p.R184I . . . CWH43 80157 broad.mit.edu 36 4 48747570 48747570 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025087 exon15 c.G1968T p.Q656H . . . PIGG 54872 broad.mit.edu 36 4 514241 514241 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017733 exon11 c.C2254T p.R752C . . . PIGG 54872 broad.mit.edu 36 4 523025 523025 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017733 exon13 c.C2795A p.S932Y . . . LRRC66 339977 broad.mit.edu 36 4 52556864 52556864 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001024611 exon4 c.G1081A p.D361N . . . LRRC66 339977 broad.mit.edu 36 4 52578447 52578447 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001024611 exon1 c.T90G p.I30M . . . SGCB 6443 broad.mit.edu 36 4 52584904 52584904 + Missense_Mutation SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G C G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000232 exon6 c.C933G p.D311E . . . SPATA18 132671 broad.mit.edu 36 4 52612633 52612633 + Silent SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G C G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145263 exon1 c.G6C p.A2A . . . SPATA18 132671 broad.mit.edu 36 4 52633033 52633033 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145263 exon6 c.G712A p.E238K . . . SCFD2 152579 broad.mit.edu 36 4 53446690 53446690 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152540 exon8 c.C1943T p.S648L . . . SCFD2 152579 broad.mit.edu 36 4 53481723 53481723 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152540 exon6 c.C1633T p.R545W . . . FIP1L1 81608 broad.mit.edu 36 4 54013981 54013981 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030917 exon16 c.C1423T p.R475W . . . LNX1 84708 broad.mit.edu 36 4 54039564 54039564 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001126328 exon8 c.G1588T p.E530X . . . LNX1 84708 broad.mit.edu 36 4 54059620 54059620 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001126328 exon5 c.G923A p.R308H . . . LNX1 84708 broad.mit.edu 36 4 54059702 54059702 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001126328 exon5 c.G841T p.D281Y . . . LNX1 84708 broad.mit.edu 36 4 54068918 54068918 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001126328 exon3 c.G614A p.R205Q . . . PDGFRA 5156 broad.mit.edu 36 4 54828318 54828318 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006206 exon6 c.G865A p.E289K . . . PDGFRA 5156 broad.mit.edu 36 4 54838403 54838403 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006206 exon13 c.G1878T p.V626V . . . PDGFRA 5156 broad.mit.edu 36 4 54841393 54841393 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006206 exon16 c.G2310T p.K770N . . . PDGFRA 5156 broad.mit.edu 36 4 54849771 54849771 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006206 exon20 c.A2723C p.K908T . . . KIT 3815 broad.mit.edu 36 4 55256589 55256589 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000222 exon2 c.G222A p.T74T . . . KIT 3815 broad.mit.edu 36 4 55264661 55264661 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000222 exon5 c.G771T p.E257D . . . KIT 3815 broad.mit.edu 36 4 55297435 55297435 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000222 exon18 c.G2499T p.V833V . . . KIT 3815 broad.mit.edu 36 4 55299386 55299386 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000222 exon21 c.G2837A p.R946Q . . . KDR 3791 broad.mit.edu 36 4 55650358 55650358 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002253 exon25 c.T3344G p.F1115C . . . CLOCK 9575 broad.mit.edu 36 4 55999433 55999433 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004898 exon22 c.A2134G p.K712E . . . CLOCK 9575 broad.mit.edu 36 4 56020083 56020083 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004898 exon10 c.C662A p.S221Y . . . EXOC1 55763 broad.mit.edu 36 4 56425218 56425218 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001024924 exon4 c.G324T p.K108N . . . CEP135 9662 broad.mit.edu 36 4 56515256 56515256 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025009 exon4 c.G422T p.R141I . . . CEP135 9662 broad.mit.edu 36 4 56572897 56572897 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025009 exon21 c.G2791T p.E931X . . . EVC2 132884 broad.mit.edu 36 4 5681189 5681189 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166136 exon12 c.G1644T p.E548D . . . KIAA1211 57482 broad.mit.edu 36 4 56868472 56868472 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020722 exon5 c.G135T p.K45N . . . AASDH 132949 broad.mit.edu 36 4 56899426 56899426 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181806 exon15 c.G3196A p.E1066K . . . PPAT 5471 broad.mit.edu 36 4 56967450 56967450 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002703 exon3 c.G370A p.E124K . . . PPAT 5471 broad.mit.edu 36 4 56968598 56968598 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002703 exon2 c.C170T p.S57L . . . PAICS 10606 broad.mit.edu 36 4 57012915 57012915 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001079524 exon7 c.C892T p.R298X . . . SRP72 6731 broad.mit.edu 36 4 57037596 57037596 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006947 exon6 c.C613A p.L205I . . . HOPX 84525 broad.mit.edu 36 4 57209655 57209655 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032495 exon4 c.C264T p.S88S . . . SPINK2 6691 broad.mit.edu 36 4 57371078 57371078 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021114 exon4 c.G239A p.R80Q . . . REST 5978 broad.mit.edu 36 4 57491383 57491383 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001193508 exon4 c.G1602T p.V534V . . . REST 5978 broad.mit.edu 36 4 57492668 57492668 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193508 exon4 c.A2887C p.N963H . . . POLR2B 5431 broad.mit.edu 36 4 57576447 57576447 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000938 exon14 c.G1823A p.R608Q . . . POLR2B 5431 broad.mit.edu 36 4 57578631 57578631 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000938 exon16 c.G2303A p.R768Q . . . CRMP1 1400 broad.mit.edu 36 4 5902034 5902034 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001313 exon6 c.G607T p.D203Y . . . JAKMIP1 152789 broad.mit.edu 36 4 6117519 6117519 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144720 exon9 c.G1420T p.D474Y . . . LPHN3 23284 broad.mit.edu 36 4 62281462 62281462 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015236 exon5 c.G790A p.D264N . . . LPHN3 23284 broad.mit.edu 36 4 62528016 62528016 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015236 exon15 c.G2742T p.K914N . . . TECRL 253017 broad.mit.edu 36 4 64957573 64957573 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010874 exon1 c.G92T p.R31I . . . EPHA5 2044 broad.mit.edu 36 4 65884317 65884317 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004439 exon16 c.A2780G p.E927G . . . EPHA5 2044 broad.mit.edu 36 4 66150142 66150142 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004439 exon3 c.C722T p.A241V . . . EPHA5 2044 broad.mit.edu 36 4 66150302 66150302 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004439 exon3 c.C562A p.L188I . . . TMPRSS11D 9407 broad.mit.edu 36 4 68375822 68375822 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004262 exon8 c.C704A p.P235H . . . TMPRSS11D 9407 broad.mit.edu 36 4 68407973 68407973 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004262 exon2 c.G27A p.S9S . . . TMPRSS11A 339967 broad.mit.edu 36 4 68467384 68467384 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182606 exon8 c.C863T p.S288L . . . TMPRSS11F 389208 broad.mit.edu 36 4 68638871 68638871 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207407 exon3 c.G247T p.E83X . . . TMPRSS11F 389208 broad.mit.edu 36 4 68638941 68638941 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207407 exon3 c.C177T p.F59F . . . TMPRSS11B 132724 broad.mit.edu 36 4 68777681 68777681 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182502 exon8 c.G835T p.E279X . . . TMPRSS11B 132724 broad.mit.edu 36 4 68790075 68790075 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182502 exon2 c.G51A p.T17T . . . YTHDC1 91746 broad.mit.edu 36 4 68885423 68885423 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031732 exon4 c.G800A p.R267Q . . . UGT2B17 7367 broad.mit.edu 36 4 69086208 69086208 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077 exon6 c.G1323T p.E441D . . . UGT2B17 7367 broad.mit.edu 36 4 69116704 69116704 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077 exon1 c.G94T p.E32X . . . KIAA0232 9778 broad.mit.edu 36 4 6915136 6915136 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014743 exon7 c.G2126T p.R709I . . . KIAA0232 9778 broad.mit.edu 36 4 6915228 6915228 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014743 exon7 c.G2218A p.E740K . . . KIAA0232 9778 broad.mit.edu 36 4 6915566 6915566 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014743 exon7 c.G2556A p.S852S . . . UGT2A3 79799 broad.mit.edu 36 4 69830222 69830222 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024743 exon6 c.C1482A p.F494L . . . UGT2B11 10720 broad.mit.edu 36 4 70104927 70104927 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001073 exon5 c.C1120A p.H374N . . . UGT2B11 10720 broad.mit.edu 36 4 70114628 70114628 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001073 exon1 c.G402T p.K134N . . . UGT2B28 54490 broad.mit.edu 36 4 70181209 70181209 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_053039 exon1 c.G402T p.K134N . . . SULT1B1 27284 broad.mit.edu 36 4 70630961 70630961 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014465 exon7 c.A625C p.I209L . . . SULT1E1 6783 broad.mit.edu 36 4 70754594 70754594 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005420 exon4 c.C299A p.S100Y . . . CSN2 1447 broad.mit.edu 36 4 70857928 70857928 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001891 exon5 c.A328G p.T110A . . . CCDC96 257236 broad.mit.edu 36 4 7094166 7094166 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153376 exon1 c.C1401T p.I467I . . . CSN3 1448 broad.mit.edu 36 4 71149663 71149663 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005212 exon4 c.A447G p.E149E . . . AMTN 401138 broad.mit.edu 36 4 71431358 71431358 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212557 exon8 c.C371T p.T124M . . . ENAM 10117 broad.mit.edu 36 4 71727999 71727999 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031889 exon9 c.C1992A p.V664V . . . ENAM 10117 broad.mit.edu 36 4 71728115 71728115 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031889 exon9 c.C2108T p.S703F . . . IGJ 3512 broad.mit.edu 36 4 71746679 71746679 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144646 exon2 c.G182A p.R61Q . . . GRSF1 2926 broad.mit.edu 36 4 71912580 71912580 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098477 exon6 c.C502T p.R168X . . . DCK 1633 broad.mit.edu 36 4 72113939 72113939 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000788 exon7 c.G763T p.E255X . . . SLC4A4 8671 broad.mit.edu 36 4 72423975 72423975 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134742 exon4 c.G278A p.R93Q . . . SLC4A4 8671 broad.mit.edu 36 4 72535800 72535800 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134742 exon11 c.C1240A p.Q414K . . . SLC4A4 8671 broad.mit.edu 36 4 72631023 72631023 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001134742 exon19 c.G2535A p.T845T . . . SLC4A4 8671 broad.mit.edu 36 4 72652427 72652427 + 3'UTR SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001134742 exon25 c.G3238T p.D1080Y . . . GC 2638 broad.mit.edu 36 4 72850054 72850054 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000583 exon4 c.C432A p.I144I . . . NPFFR2 10886 broad.mit.edu 36 4 73116658 73116658 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004885 exon1 c.G176A p.R59H . . . ADAMTS3 9508 broad.mit.edu 36 4 73380342 73380342 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014243 exon19 c.C2616A p.C872X . . . ADAMTS3 9508 broad.mit.edu 36 4 73382892 73382892 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014243 exon18 c.G2556T p.K852N . . . ADAMTS3 9508 broad.mit.edu 36 4 73390639 73390639 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014243 exon16 c.A2189C p.K730T . . . ADAMTS3 9508 broad.mit.edu 36 4 73395664 73395664 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014243 exon14 c.G2020T p.D674Y . . . ADAMTS3 9508 broad.mit.edu 36 4 73403932 73403932 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014243 exon9 c.G1333T p.E445X . . . COX18 285521 broad.mit.edu 36 4 74142836 74142836 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173827 exon6 c.C861T p.F287F . . . COX18 285521 broad.mit.edu 36 4 74149979 74149979 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173827 exon3 c.G450T p.K150N . . . ANKRD17 26057 broad.mit.edu 36 4 74203273 74203273 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198889 exon21 c.G3431T p.R1144I . . . ANKRD17 26057 broad.mit.edu 36 4 74224262 74224262 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032217 exon15 c.G2935T p.E979X . . . ANKRD17 26057 broad.mit.edu 36 4 74231900 74231900 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198889 exon9 c.G1681A p.E561K . . . SORCS2 57537 broad.mit.edu 36 4 7448933 7448933 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020777 exon2 c.G498A p.T166T . . . ALB 213 broad.mit.edu 36 4 74494032 74494032 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000477 exon5 c.C579T p.C193C . . . AFM 173 broad.mit.edu 36 4 74568543 74568543 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001133 exon2 c.A110C p.K37T . . . AFM 173 broad.mit.edu 36 4 74570547 74570547 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001133 exon4 c.C375A p.F125L . . . AFM 173 broad.mit.edu 36 4 74573289 74573289 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001133 exon7 c.C792A p.S264S . . . AFM 173 broad.mit.edu 36 4 74583793 74583793 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001133 exon11 c.C1388T p.T463M . . . IL8 3576 broad.mit.edu 36 4 74827036 74827036 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000584 exon4 c.G291T p.E97D . . . CXCL5 6374 broad.mit.edu 36 4 75082870 75082870 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002994 exon2 c.G159T p.Q53H . . . G3BP2 9908 broad.mit.edu 36 4 76789642 76789642 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203504 exon11 c.G1346A p.R449H . . . G3BP2 9908 broad.mit.edu 36 4 76791318 76791318 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203504 exon9 c.C877T p.R293C . . . USO1 8615 broad.mit.edu 36 4 76940957 76940957 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003715 exon14 c.G1694A p.S565N . . . PPEF2 5470 broad.mit.edu 36 4 77007502 77007502 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006239 exon14 c.G1744A p.A582T . . . CXCL9 4283 broad.mit.edu 36 4 77143813 77143813 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002416 exon4 c.C340T p.R114X . . . CXCL10 3627 broad.mit.edu 36 4 77162546 77162546 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001565 exon3 c.A275T p.E92V . . . CXCL11 6373 broad.mit.edu 36 4 77175414 77175414 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005409 exon2 c.A167G p.N56S . . . NUP54 53371 broad.mit.edu 36 4 77255593 77255593 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017426 exon12 c.G1474A p.E492K . . . NUP54 53371 broad.mit.edu 36 4 77264917 77264917 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017426 exon9 c.T1073G p.I358S . . . SCARB2 950 broad.mit.edu 36 4 77301897 77301897 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005506 exon12 c.G1430A p.R477Q . . . CCDC158 339965 broad.mit.edu 36 4 77507764 77507764 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042784 exon11 c.G1537A p.E513K . . . SORCS2 57537 broad.mit.edu 36 4 7767937 7767937 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020777 exon17 c.G2251T p.G751W . . . ANKRD56 345079 broad.mit.edu 36 4 78036880 78036880 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029870 exon1 c.C1147T p.R383C . . . CCNI 10983 broad.mit.edu 36 4 78195449 78195449 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006835 exon6 c.G568A p.A190T . . . CCNI 10983 broad.mit.edu 36 4 78196278 78196278 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006835 exon5 c.G320T p.R107I . . . MRPL1 65008 broad.mit.edu 36 4 79023484 79023484 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020236 exon3 c.G208T p.E70X . . . MRPL1 65008 broad.mit.edu 36 4 79023599 79023599 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020236 exon3 c.A323C p.K108T . . . FRAS1 80144 broad.mit.edu 36 4 79504156 79504156 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025074 exon22 c.C2646T p.L882L . . . FRAS1 80144 broad.mit.edu 36 4 79586987 79586987 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025074 exon43 c.C5939A p.S1980Y . . . FRAS1 80144 broad.mit.edu 36 4 79606409 79606409 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025074 exon50 c.C7053T p.I2351I . . . FRAS1 80144 broad.mit.edu 36 4 79648965 79648965 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025074 exon63 c.G9561T p.K3187N . . . FRAS1 80144 broad.mit.edu 36 4 79661757 79661757 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025074 exon68 c.C10597T p.R3533X . . . BMP2K 55589 broad.mit.edu 36 4 79991110 79991110 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_198892 exon7 c.A759G p.G253G . . . BMP2K 55589 broad.mit.edu 36 4 80001599 80001599 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198892 exon9 c.G1020A p.P340P . . . BMP2K 55589 broad.mit.edu 36 4 80052167 80052167 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198892 exon16 c.G3442A p.E1148K . . . PAQR3 152559 broad.mit.edu 36 4 80060746 80060746 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040202 exon6 c.C907T p.P303S . . . NAA11 84779 broad.mit.edu 36 4 80465439 80465439 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032693 exon1 c.G617A p.S206N . . . GK2 2712 broad.mit.edu 36 4 80547342 80547342 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033214 exon1 c.A1037C p.E346A . . . FGF5 2250 broad.mit.edu 36 4 81407213 81407213 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033143 exon1 c.G211T p.G71X . . . C4orf22 255119 broad.mit.edu 36 4 82010212 82010212 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152770 exon4 c.G375T p.E125D . . . BMP3 651 broad.mit.edu 36 4 82186338 82186338 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001201 exon2 c.G739T p.A247S . . . PRKG2 5593 broad.mit.edu 36 4 82307387 82307387 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006259 exon5 c.G864T p.K288N . . . PRKG2 5593 broad.mit.edu 36 4 82311971 82311971 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006259 exon3 c.G640T p.E214X . . . RASGEF1B 153020 broad.mit.edu 36 4 82585996 82585996 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152545 exon7 c.G750T p.K250N . . . HTRA3 94031 broad.mit.edu 36 4 8356889 8356889 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053044 exon8 c.G1179A p.P393P . . . ENOPH1 58478 broad.mit.edu 36 4 83588194 83588194 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021204 exon2 c.A182C p.K61T . . . SCD5 79966 broad.mit.edu 36 4 83821078 83821078 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001037582 exon3 c.C375T p.F125F . . . SEC31A 22872 broad.mit.edu 36 4 83982330 83982330 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077207 exon22 c.G2955A p.A985A . . . THAP9 79725 broad.mit.edu 36 4 84045092 84045092 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024672 exon2 c.C260A p.S87Y . . . THAP9 79725 broad.mit.edu 36 4 84046514 84046514 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024672 exon3 c.T290C p.V97A . . . LIN54 132660 broad.mit.edu 36 4 84079874 84079874 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001115008 exon7 c.A619C p.T207P . . . COPS4 51138 broad.mit.edu 36 4 84190100 84190100 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016129 exon4 c.G349T p.E117X . . . PLAC8 51316 broad.mit.edu 36 4 84234899 84234899 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001130715 exon4 c.G313T p.D105Y . . . COQ2 27235 broad.mit.edu 36 4 84404501 84404501 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015697 exon7 c.A1141G p.N381D . . . HELQ 113510 broad.mit.edu 36 4 84561808 84561808 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133636 exon15 c.C2881T p.R961X . . . MRPS18C 51023 broad.mit.edu 36 4 84601173 84601173 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016067 exon5 c.G316T p.E106X . . . AGPAT9 84803 broad.mit.edu 36 4 84735034 84735034 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032717 exon7 c.C751A p.H251N . . . NKX6-1 4825 broad.mit.edu 36 4 85635985 85635985 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006168 exon2 c.G707T p.R236I . . . CDS1 1040 broad.mit.edu 36 4 85788761 85788761 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001263 exon13 c.G1284A p.Q428Q . . . WDFY3 23001 broad.mit.edu 36 4 85877412 85877412 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014991 exon41 c.G6706A p.A2236T . . . WDFY3 23001 broad.mit.edu 36 4 85880572 85880572 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014991 exon39 c.T6256G p.L2086V . . . WDFY3 23001 broad.mit.edu 36 4 85915146 85915146 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014991 exon29 c.G4605T p.K1535N . . . WDFY3 23001 broad.mit.edu 36 4 85960276 85960276 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014991 exon12 c.C1679A p.S560X . . . ARHGAP24 83478 broad.mit.edu 36 4 87112291 87112291 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031305 exon3 c.G399A p.A133A . . . MAPK10 5602 broad.mit.edu 36 4 87169419 87169419 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138981 exon8 c.G772T p.E258X . . . PTPN13 5783 broad.mit.edu 36 4 87885299 87885299 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon17 c.G2644T p.D882Y . . . PTPN13 5783 broad.mit.edu 36 4 87890656 87890656 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080683 exon18 c.C2660T p.S887L . . . PTPN13 5783 broad.mit.edu 36 4 87893233 87893233 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_080683 exon20 c.A3214C p.K1072Q . . . PTPN13 5783 broad.mit.edu 36 4 87902950 87902950 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon21 c.G3027T p.M1009I . . . PTPN13 5783 broad.mit.edu 36 4 87903120 87903120 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon21 c.C3197A p.S1066Y . . . PTPN13 5783 broad.mit.edu 36 4 87903226 87903226 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon21 c.G3303T p.E1101D . . . PTPN13 5783 broad.mit.edu 36 4 87908132 87908132 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon25 c.G3895T p.D1299Y . . . PTPN13 5783 broad.mit.edu 36 4 87926088 87926088 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon37 c.C5747A p.S1916X . . . PTPN13 5783 broad.mit.edu 36 4 87944017 87944017 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon40 c.C6064A p.P2022T . . . PTPN13 5783 broad.mit.edu 36 4 87947822 87947822 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080684 exon42 c.C6258T p.F2086F . . . SLC10A6 345274 broad.mit.edu 36 4 87989138 87989138 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_197965 exon1 c.C155A p.S52Y . . . AFF1 4299 broad.mit.edu 36 4 88266401 88266401 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166693 exon14 c.C2700T p.G900G . . . SPARCL1 8404 broad.mit.edu 36 4 88634131 88634131 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128310 exon5 c.C845T p.S282L . . . DSPP 1834 broad.mit.edu 36 4 88752614 88752614 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014208 exon4 c.G252T p.K84N . . . DMP1 1758 broad.mit.edu 36 4 88802935 88802935 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079911 exon5 c.G933A p.Q311Q . . . MEPE 56955 broad.mit.edu 36 4 88985474 88985474 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001184697 exon6 c.G91A p.A31T . . . PKD2 5311 broad.mit.edu 36 4 89208219 89208219 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000297 exon13 c.C2504A p.S835Y . . . ABCG2 9429 broad.mit.edu 36 4 89261932 89261932 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004827 exon6 c.G568T p.E190X ABCG2,central_nervous_system,brain,Substitution - Missense,0 . . ABCG2 9429 broad.mit.edu 36 4 89272752 89272752 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004827 exon3 c.C263T p.S88L . . . HERC6 55008 broad.mit.edu 36 4 89553290 89553290 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017912 exon12 c.T1406C p.F469S . . . HERC5 51191 broad.mit.edu 36 4 89619550 89619550 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016323 exon13 c.G1606T p.E536X . . . HERC5 51191 broad.mit.edu 36 4 89626342 89626342 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016323 exon14 c.C1791A p.L597L . . . HERC5 51191 broad.mit.edu 36 4 89627288 89627288 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016323 exon15 c.C1897T p.P633S . . . HERC3 8916 broad.mit.edu 36 4 89794218 89794218 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014606 exon7 c.C688T p.R230X . . . FAM13A 10144 broad.mit.edu 36 4 89908196 89908196 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014883 exon12 c.G1496T p.R499I . . . FAM13A 10144 broad.mit.edu 36 4 89991194 89991194 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014883 exon7 c.G1007T p.S336I . . . FAM13A 10144 broad.mit.edu 36 4 90046582 90046582 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014883 exon6 c.G814T p.D272Y . . . GPRIN3 285513 broad.mit.edu 36 4 90388788 90388788 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198281 exon2 c.G1497A p.T499T . . . MMRN1 22915 broad.mit.edu 36 4 91035627 91035627 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007351 exon1 c.G482A p.G161D . . . MMRN1 22915 broad.mit.edu 36 4 91068050 91068050 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007351 exon5 c.C1037T p.S346F . . . MMRN1 22915 broad.mit.edu 36 4 91076066 91076066 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007351 exon6 c.G2212T p.A738S . . . MMRN1 22915 broad.mit.edu 36 4 91076583 91076583 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007351 exon6 c.C2729A p.S910Y . . . FAM190A 401145 broad.mit.edu 36 4 91448858 91448858 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145065 exon2 c.G400A p.D134N . . . TMSL3 7117 broad.mit.edu 36 4 91979146 91979146 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_183049 exon1 c.G66A p.E22E . . . GRID2 2895 broad.mit.edu 36 4 93730349 93730349 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001510 exon2 c.C133T p.R45C . . . DRD5 1816 broad.mit.edu 36 4 9393592 9393592 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000798 exon1 c.G841A p.D281N . . . DRD5 1816 broad.mit.edu 36 4 9394000 9394000 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000798 exon1 c.G1249A p.A417T . . . DRD5 1816 broad.mit.edu 36 4 9394170 9394170 + Silent SNP G A A rs1064139 by-frequency TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000798 exon1 c.G1419A p.P473P . . . GRID2 2895 broad.mit.edu 36 4 94225422 94225422 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001510 exon3 c.G498A p.Q166Q . . . SLC2A9 56606 broad.mit.edu 36 4 9437267 9437267 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001290 exon13 c.C1388T p.A463V . . . GRID2 2895 broad.mit.edu 36 4 94766466 94766466 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001510 exon14 c.C2217T p.F739F . . . SMARCAD1 56916 broad.mit.edu 36 4 95423410 95423410 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128429 exon22 c.G2848T p.D950Y . . . PDLIM5 10611 broad.mit.edu 36 4 95716019 95716019 + Intron SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006457 exon5 c.T521C p.F174S . . . SLC2A9 56606 broad.mit.edu 36 4 9632127 9632127 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020041 exon1 c.T25C p.S9P . . . PDHA2 5161 broad.mit.edu 36 4 96980876 96980876 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005390 exon1 c.C552T p.N184N . . . PDHA2 5161 broad.mit.edu 36 4 96981450 96981450 + Missense_Mutation SNP C T T rs17024795 by-cluster,by-frequency,by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005390 exon1 c.C1126T p.R376C . . . C4orf37 285555 broad.mit.edu 36 4 98981016 98981016 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_174952 exon9 c.G1135A p.A379T . . . RAP1GDS1 5910 broad.mit.edu 36 4 99560309 99560309 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001100428 exon10 c.G1147T p.D383Y . . . WWC3 55841 broad.mit.edu 36 X 10007833 10007833 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015691 exon5 c.G366T p.E122D . . . DRP2 1821 broad.mit.edu 36 X 100390169 100390169 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001939 exon14 c.G1465A p.G489R . . . BTK 695 broad.mit.edu 36 X 100494946 100494946 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000061 exon18 c.A1800G p.R600R . . . BTK 695 broad.mit.edu 36 X 100499154 100499154 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000061 exon13 c.C1176T p.Y392Y . . . BTK 695 broad.mit.edu 36 X 100500061 100500061 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000061 exon12 c.G995A p.R332H . . . BTK 695 broad.mit.edu 36 X 100516237 100516237 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000061 exon3 c.C183A p.I61I . . . HNRNPH2 3188 broad.mit.edu 36 X 100554674 100554674 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019597 exon2 c.G1042T p.D348Y . . . ARMCX3 51566 broad.mit.edu 36 X 100766719 100766719 + Nonsense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177948 exon5 c.A94T p.K32X . . . CLCN4 1183 broad.mit.edu 36 X 10136600 10136600 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001830 exon9 c.C1359T p.I453I . . . CLCN4 1183 broad.mit.edu 36 X 10148805 10148805 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001830 exon12 c.C2080T p.R694W . . . GPRASP2 114928 broad.mit.edu 36 X 101856607 101856607 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001004051 exon5 c.A154C p.T52P . . . GPRASP2 114928 broad.mit.edu 36 X 101857639 101857639 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004051 exon5 c.G1186T p.E396X . . . GPRASP2 114928 broad.mit.edu 36 X 101858155 101858155 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004051 exon5 c.C1702T p.R568X . . . NXF3 56000 broad.mit.edu 36 X 102221599 102221599 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022052 exon12 c.G1050T p.Q350H . . . TMEM31 203562 broad.mit.edu 36 X 102855277 102855277 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182541 exon3 c.A202C p.I68L . . . H2BFWT 158983 broad.mit.edu 36 X 103154467 103154467 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001002916 exon1 c.C422T p.A141V . . . MID1 4281 broad.mit.edu 36 X 10377522 10377522 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193277 exon10 c.C1890T p.D630D . . . IL1RAPL2 26280 broad.mit.edu 36 X 104885870 104885870 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017416 exon10 c.C1236A p.D412E . . . MID1 4281 broad.mit.edu 36 X 10494931 10494931 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193277 exon2 c.G657T p.L219F . . . MID1 4281 broad.mit.edu 36 X 10495339 10495339 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193277 exon2 c.C249T p.I83I . . . NRK 203447 broad.mit.edu 36 X 105024527 105024527 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198465 exon6 c.G425T p.R142I . . . NRK 203447 broad.mit.edu 36 X 105054063 105054063 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198465 exon18 c.G2908T p.D970Y . . . NRK 203447 broad.mit.edu 36 X 105076595 105076595 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_198465 exon25 c.A4135C p.I1379L . . . SERPINA7 6906 broad.mit.edu 36 X 105167667 105167667 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000354 exon2 c.G39A p.G13G . . . MUM1L1 139221 broad.mit.edu 36 X 105336314 105336314 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152423 exon5 c.C233T p.A78V . . . MUM1L1 139221 broad.mit.edu 36 X 105336877 105336877 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152423 exon5 c.C796A p.L266M . . . CXorf57 55086 broad.mit.edu 36 X 105762589 105762589 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018015 exon4 c.T1058G p.L353R . . . TEX13B 56156 broad.mit.edu 36 X 107111197 107111197 + Silent SNP G A A rs41300888 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031273 exon3 c.C708T p.C236C . . . VSIG1 340547 broad.mit.edu 36 X 107206983 107206983 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182607 exon7 c.G880T p.E294X . . . ATG4A 115201 broad.mit.edu 36 X 107256022 107256022 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178270 exon2 c.G70T p.D24Y . . . COL4A5 1287 broad.mit.edu 36 X 107710897 107710897 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000495 exon16 c.G920A p.G307D . . . COL4A5 1287 broad.mit.edu 36 X 107797020 107797020 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000495 exon40 c.T3555C p.G1185G . . . COL4A5 1287 broad.mit.edu 36 X 107824744 107824744 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033380 exon49 c.G4745A p.R1582Q . . . IRS4 8471 broad.mit.edu 36 X 107864226 107864226 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003604 exon1 c.G2005T p.E669X . . . IRS4 8471 broad.mit.edu 36 X 107864642 107864642 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003604 exon1 c.G1589A p.R530Q . . . IRS4 8471 broad.mit.edu 36 X 107864931 107864931 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003604 exon1 c.C1300T p.R434C . . . IRS4 8471 broad.mit.edu 36 X 107865034 107865034 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003604 exon1 c.C1197T p.F399F . . . GUCY2F 2986 broad.mit.edu 36 X 108525236 108525236 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001522 exon12 c.T2414A p.I805K . . . RGAG1 57529 broad.mit.edu 36 X 109580527 109580527 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020769 exon3 c.G26A p.R9Q . . . RGAG1 57529 broad.mit.edu 36 X 109580588 109580588 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020769 exon3 c.T87C p.C29C . . . RGAG1 57529 broad.mit.edu 36 X 109581525 109581525 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020769 exon3 c.G1024T p.D342Y . . . RGAG1 57529 broad.mit.edu 36 X 109583421 109583421 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020769 exon3 c.G2920T p.E974X . . . RGAG1 57529 broad.mit.edu 36 X 109584000 109584000 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020769 exon3 c.G3499T p.E1167X . . . RGAG1 57529 broad.mit.edu 36 X 109584163 109584163 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020769 exon3 c.G3662A p.R1221K . . . CHRDL1 91851 broad.mit.edu 36 X 109818563 109818563 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143981 exon9 c.C903T p.I301I . . . CHRDL1 91851 broad.mit.edu 36 X 109922056 109922056 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143981 exon2 c.A10C p.K4Q . . . PAK3 5063 broad.mit.edu 36 X 110325772 110325772 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128166 exon13 c.G1157A p.R386K . . . DCX 1641 broad.mit.edu 36 X 110540014 110540014 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178153 exon2 c.C269A p.S90Y . . . DCX 1641 broad.mit.edu 36 X 110540107 110540107 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178153 exon2 c.G176A p.R59H . . . ARHGAP6 395 broad.mit.edu 36 X 11116865 11116865 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013423 exon4 c.C372A p.L124L . . . ZCCHC16 340595 broad.mit.edu 36 X 111584873 111584873 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004308 exon3 c.C261A p.I87I . . . HTR2C 3358 broad.mit.edu 36 X 113872206 113872206 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000868 exon4 c.C283A p.L95I . . . HTR2C 3358 broad.mit.edu 36 X 114047684 114047684 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000868 exon6 c.A827G p.N276S . . . IL13RA2 3598 broad.mit.edu 36 X 114146121 114146121 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000640 exon9 c.G1011A p.S337S . . . IL13RA2 3598 broad.mit.edu 36 X 114158080 114158080 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000640 exon2 c.C9T p.F3F . . . PLS3 5358 broad.mit.edu 36 X 114770447 114770447 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005032 exon5 c.G412T p.E138X . . . AGTR2 186 broad.mit.edu 36 X 115217621 115217621 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000686 exon3 c.C60T p.F20F . . . WDR44 54521 broad.mit.edu 36 X 117411185 117411185 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001184966 exon3 c.C674A p.P225H . . . DOCK11 139818 broad.mit.edu 36 X 117617183 117617183 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144658 exon23 c.G2526A p.S842S . . . DOCK11 139818 broad.mit.edu 36 X 117667056 117667056 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144658 exon41 c.C4519A p.L1507I . . . DOCK11 139818 broad.mit.edu 36 X 117694002 117694002 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144658 exon47 c.C5275A p.L1759I . . . IL13RA1 3597 broad.mit.edu 36 X 117794424 117794424 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001560 exon10 c.G1113T p.K371N . . . LONRF3 79836 broad.mit.edu 36 X 118029830 118029830 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024778 exon7 c.C1554T p.F518F . . . KIAA1210 57481 broad.mit.edu 36 X 118104626 118104626 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020721 exon11 c.T4595C p.L1532P . . . KIAA1210 57481 broad.mit.edu 36 X 118123122 118123122 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020721 exon7 c.G929T p.R310L . . . FAM70A 55026 broad.mit.edu 36 X 119294894 119294894 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017938 exon8 c.C621T p.I207I . . . CUL4B 8450 broad.mit.edu 36 X 119592438 119592438 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003588 exon2 c.C63T p.D21D . . . THOC2 57187 broad.mit.edu 36 X 122584771 122584771 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001081550 exon29 c.A3548G p.E1183G . . . ODZ1 10178 broad.mit.edu 36 X 123342732 123342732 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014253 exon31 c.C7513T p.R2505W . . . ODZ1 10178 broad.mit.edu 36 X 123347589 123347589 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014253 exon28 c.A5674G p.M1892V . . . ODZ1 10178 broad.mit.edu 36 X 123606864 123606864 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014253 exon10 c.C1686A p.S562S . . . DCAF12L2 340578 broad.mit.edu 36 X 125127337 125127337 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013628 exon1 c.C252T p.P84P . . . FRMPD4 9758 broad.mit.edu 36 X 12635631 12635631 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014728 exon13 c.C1410T p.I470I . . . FRMPD4 9758 broad.mit.edu 36 X 12646125 12646125 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014728 exon16 c.C3259T p.R1087C . . . TLR7 51284 broad.mit.edu 36 X 12813948 12813948 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016562 exon3 c.C400A p.L134M . . . TLR7 51284 broad.mit.edu 36 X 12814758 12814758 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016562 exon3 c.C1210A p.L404I . . . SMARCA1 6594 broad.mit.edu 36 X 128473586 128473586 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003069 exon6 c.G686A p.R229Q . . . TLR8 51311 broad.mit.edu 36 X 12848999 12848999 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_138636 exon2 c.A1919C p.N640T . . . TLR8 51311 broad.mit.edu 36 X 12849183 12849183 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138636 exon2 c.C2103A p.L701L . . . OCRL 4952 broad.mit.edu 36 X 128548662 128548662 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001587 exon19 c.G2118T p.E706D . . . ZDHHC9 51114 broad.mit.edu 36 X 128785385 128785385 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016032 exon5 c.C438A p.I146I . . . ELF4 2000 broad.mit.edu 36 X 129032813 129032813 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001421 exon7 c.G692T p.W231L . . . RAB33A 9363 broad.mit.edu 36 X 129146296 129146296 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004794 exon2 c.G615T p.Q205H . . . ZNF280C 55609 broad.mit.edu 36 X 129167026 129167026 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017666 exon17 c.C2087A p.S696Y . . . SLC25A14 9016 broad.mit.edu 36 X 129310950 129310950 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003951 exon4 c.A362C p.K121T . . . GPR119 139760 broad.mit.edu 36 X 129346982 129346982 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178471 exon1 c.C121A p.L41I . . . IGSF1 3547 broad.mit.edu 36 X 130240839 130240839 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001170961 exon11 c.C1724A p.S575Y . . . IGSF1 3547 broad.mit.edu 36 X 130243494 130243494 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170962 exon7 c.C1325A p.S442Y . . . IGSF1 3547 broad.mit.edu 36 X 130246852 130246852 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170962 exon4 c.C622T p.L208L . . . OR13H1 347468 broad.mit.edu 36 X 130505742 130505742 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001004486 exon1 c.A14G p.N5S . . . OR13H1 347468 broad.mit.edu 36 X 130506410 130506410 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004486 exon1 c.C682T p.R228C . . . MST4 51765 broad.mit.edu 36 X 131035856 131035856 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042453 exon11 c.C1008T p.D336D . . . ATXN3L 92552 broad.mit.edu 36 X 13247522 13247522 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001135995 exon1 c.C453A p.F151L . . . CCDC160 347475 broad.mit.edu 36 X 133206901 133206901 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001101357 exon2 c.G405T p.K135N . . . CCDC160 347475 broad.mit.edu 36 X 133207181 133207181 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001101357 exon2 c.G685T p.E229X . . . HPRT1 3251 broad.mit.edu 36 X 133455281 133455281 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000194 exon6 c.C480T p.V160V . . . ZNF75D 7626 broad.mit.edu 36 X 134248780 134248780 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007131 exon6 c.G1488T p.Q496H . . . ZNF449 203523 broad.mit.edu 36 X 134322306 134322306 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152695 exon5 c.G1196T p.R399I . . . ZNF449 203523 broad.mit.edu 36 X 134322386 134322386 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152695 exon5 c.C1276T p.L426L . . . SAGE1 55511 broad.mit.edu 36 X 134820264 134820264 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018666 exon16 c.G1889A p.R630H . . . FHL1 2273 broad.mit.edu 36 X 135116398 135116398 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001159702 exon3 c.C141T p.I47I . . . MAP7D3 79649 broad.mit.edu 36 X 135154582 135154582 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001173517 exon4 c.A292G p.T98A . . . GPR112 139378 broad.mit.edu 36 X 135232754 135232754 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153834 exon5 c.C222A p.F74L . . . GPR112 139378 broad.mit.edu 36 X 135260213 135260213 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153834 exon6 c.C6682A p.L2228I . . . GPR112 139378 broad.mit.edu 36 X 135315653 135315653 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153834 exon23 c.C8791T p.R2931W . . . BRS3 680 broad.mit.edu 36 X 135398289 135398289 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001727 exon1 c.G350A p.R117K . . . BRS3 680 broad.mit.edu 36 X 135402007 135402007 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001727 exon3 c.G1007T p.S336I . . . EGFL6 25975 broad.mit.edu 36 X 13546029 13546029 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001167890 exon8 c.G1038T p.E346D . . . EGFL6 25975 broad.mit.edu 36 X 13555108 13555108 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001167890 exon11 c.G1346A p.R449Q . . . ARHGEF6 9459 broad.mit.edu 36 X 135579318 135579318 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004840 exon21 c.G2179T p.E727X . . . ARHGEF6 9459 broad.mit.edu 36 X 135584859 135584859 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004840 exon19 c.G2008A p.A670T . . . TCEANC 170082 broad.mit.edu 36 X 13591158 13591158 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152634 exon4 c.G700T p.E234X . . . GPR101 83550 broad.mit.edu 36 X 135940829 135940829 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_054021 exon1 c.C671T p.A224V . . . GPR101 83550 broad.mit.edu 36 X 135941173 135941173 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_054021 exon1 c.C327T p.S109S . . . CSF2RA 1438 broad.mit.edu 36 X 1361670 1361670 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_172245 exon3 c.C74T p.S25L . . . RAB9A 9367 broad.mit.edu 36 X 13637096 13637096 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001195328 exon2 c.G310T p.E104X . . . OFD1 8481 broad.mit.edu 36 X 13672536 13672536 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003611 exon6 c.C494T p.S165L . . . CSF2RA 1438 broad.mit.edu 36 X 1367442 1367442 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_172245 exon5 c.C250T p.R84C . . . OFD1 8481 broad.mit.edu 36 X 13679308 13679308 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003611 exon10 c.G955T p.E319X . . . FGF13 2258 broad.mit.edu 36 X 137545351 137545351 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001139501 exon7 c.G477T p.E159D . . . ATP11C 286410 broad.mit.edu 36 X 138653408 138653408 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010986 exon26 c.C3015A p.V1005V . . . CSF2RA 1438 broad.mit.edu 36 X 1388338 1388338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_172245 exon13 c.G1169A p.R390H . . . CXorf66 347487 broad.mit.edu 36 X 138866443 138866443 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013403 exon3 c.T364G p.S122A . . . MAGEC3 139081 broad.mit.edu 36 X 140813102 140813102 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138702 exon8 c.G1750T p.E584X . . . MAGEC1 9947 broad.mit.edu 36 X 140821840 140821840 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005462 exon4 c.T984C p.S328S . . . MAGEC2 51438 broad.mit.edu 36 X 141118845 141118845 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016249 exon3 c.G595T p.E199X . . . SPANXN4 441525 broad.mit.edu 36 X 141949572 141949572 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009613 exon2 c.G174T p.K58N . . . SPANXN4 441525 broad.mit.edu 36 X 141949651 141949651 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001009613 exon2 c.G253T p.D85Y . . . SPANXN3 139067 broad.mit.edu 36 X 142424583 142424583 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009609 exon2 c.A153G p.I51M . . . SLITRK4 139065 broad.mit.edu 36 X 142546354 142546354 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173078 exon2 c.C237A p.F79L . . . UBE2NL 389898 broad.mit.edu 36 X 142795125 142795125 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012989 exon1 c.G257T p.R86I . . . IL3RA 3563 broad.mit.edu 36 X 1431018 1431018 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002183 exon5 c.G324T p.E108D . . . SLITRK2 84631 broad.mit.edu 36 X 144712345 144712345 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001144006 exon3 c.T710G p.F237C . . . FMR1 2332 broad.mit.edu 36 X 146818011 146818011 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001185081 exon5 c.G413A p.R138Q . . . FMR1 2332 broad.mit.edu 36 X 146826677 146826677 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001185081 exon11 c.G991A p.E331K . . . FMR1 2332 broad.mit.edu 36 X 146834189 146834189 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001185081 exon13 c.G1246A p.A416T . . . FMR1 2332 broad.mit.edu 36 X 146834199 146834199 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001185081 exon13 c.C1256T p.T419M . . . FMR1NB 158521 broad.mit.edu 36 X 146897915 146897915 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152578 exon4 c.C624A p.F208L . . . AFF2 2334 broad.mit.edu 36 X 147551237 147551237 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002025 exon3 c.G297T p.K99N . . . AFF2 2334 broad.mit.edu 36 X 147699130 147699130 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002025 exon4 c.C1080A p.I360I . . . MAGEA8 4107 broad.mit.edu 36 X 148774065 148774065 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001166401 exon3 c.C361T p.R121C . . . MAMLD1 10046 broad.mit.edu 36 X 149388764 149388764 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001177466 exon2 c.C186A p.C62X . . . MTMR1 8776 broad.mit.edu 36 X 149646433 149646433 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003828 exon4 c.C417T p.V139V . . . MAGEA4 4103 broad.mit.edu 36 X 150842932 150842932 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_002362 exon3 c.T140C p.V47A . . . GABRE 2564 broad.mit.edu 36 X 150881712 150881712 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004961 exon4 c.C402T p.N134N . . . GABRA3 2556 broad.mit.edu 36 X 151283650 151283650 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000808 exon2 c.C49A p.L17I . . . MAGEA6 4105 broad.mit.edu 36 X 151620339 151620339 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005363 exon3 c.C373T p.R125X . . . NSDHL 50814 broad.mit.edu 36 X 151781840 151781840 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001129765 exon6 c.C459T p.V153V . . . NSDHL 50814 broad.mit.edu 36 X 151785153 151785153 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001129765 exon7 c.C678T p.F226F . . . ASB11 140456 broad.mit.edu 36 X 15243589 15243589 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080873 exon1 c.G60A p.T20T . . . ATP2B3 492 broad.mit.edu 36 X 152478548 152478548 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021949 exon16 c.C2793T p.G931G . . . SLC6A8 6535 broad.mit.edu 36 X 152612826 152612826 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005629 exon9 c.G1302A p.P434P . . . FIGF 2277 broad.mit.edu 36 X 15286145 15286145 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004469 exon3 c.C393A p.F131L . . . OPN1LW 5956 broad.mit.edu 36 X 153075110 153075110 + Missense_Mutation SNP G A A rs1065440 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020061 exon5 c.G892A p.A298T . . . TKTL1 8277 broad.mit.edu 36 X 153190977 153190977 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145933 exon3 c.C321T p.F107F . . . SLC10A3 8273 broad.mit.edu 36 X 153370120 153370120 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019848 exon2 c.G354T p.K118N . . . G6PD 2539 broad.mit.edu 36 X 153414114 153414114 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000402 exon10 c.G1239T p.Q413H . . . MPP1 4354 broad.mit.edu 36 X 153663174 153663174 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002436 exon10 c.C1044T p.F348F . . . F8 2157 broad.mit.edu 36 X 153741995 153741995 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000132 exon25 c.C6806A p.S2269Y . . . F8 2157 broad.mit.edu 36 X 153810543 153810543 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000132 exon14 c.C4716T p.S1572S . . . F8 2157 broad.mit.edu 36 X 153812586 153812586 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000132 exon14 c.G2673T p.K891N . . . TMLHE 55217 broad.mit.edu 36 X 154396905 154396905 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184797 exon4 c.G574A p.V192I . . . TMLHE 55217 broad.mit.edu 36 X 154427989 154427989 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184797 exon2 c.C143A p.S48Y . . . P2RY8 286530 broad.mit.edu 36 X 1544787 1544787 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178129 exon2 c.G665A p.R222H . . . SPRY3 10251 broad.mit.edu 36 X 154657573 154657573 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005840 exon2 c.G846T p.K282N . . . ACE2 59272 broad.mit.edu 36 X 15506250 15506250 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021804 exon10 c.A1180C p.N394H . . . ACE2 59272 broad.mit.edu 36 X 15519757 15519757 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021804 exon5 c.C583T p.H195Y . . . ACE2 59272 broad.mit.edu 36 X 15519834 15519834 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021804 exon5 c.G506T p.R169I . . . AKAP17A 8227 broad.mit.edu 36 X 1672547 1672547 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005088 exon2 c.C192A p.F64L . . . TXLNG 55787 broad.mit.edu 36 X 16767910 16767910 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018360 exon9 c.C1198T p.R400C . . . RBBP7 5931 broad.mit.edu 36 X 16780621 16780621 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198719 exon8 c.G1069A p.E357K . . . SCML2 10389 broad.mit.edu 36 X 18174717 18174717 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006089 exon13 c.C1723T p.R575X . . . CDKL5 6792 broad.mit.edu 36 X 18532743 18532743 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003159 exon12 c.C1778A p.S593Y . . . RS1 6247 broad.mit.edu 36 X 18570082 18570082 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000330 exon6 c.G638A p.R213Q . . . PPEF1 5475 broad.mit.edu 36 X 18689599 18689599 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152226 exon9 c.T542A p.F181Y . . . PHKA2 5256 broad.mit.edu 36 X 18821543 18821543 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000292 exon33 c.C3689T p.S1230L . . . GPR64 10149 broad.mit.edu 36 X 18938719 18938719 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184837 exon15 c.G1108T p.E370X . . . PDHA1 5160 broad.mit.edu 36 X 19278110 19278110 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173454 exon4 c.G366T p.Q122H . . . MAP3K15 389840 broad.mit.edu 36 X 19385047 19385047 + 5'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001671 exon6 c.G900A p.A300A . . . MAP3K15 389840 broad.mit.edu 36 X 19388144 19388144 + 5'UTR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001671 exon5 c.G768T p.E256D . . . SH3KBP1 30011 broad.mit.edu 36 X 19634938 19634938 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024666 exon3 c.C261A p.I87I . . . MAP7D2 256714 broad.mit.edu 36 X 19941125 19941125 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168465 exon14 c.A1853G p.K618R . . . MAP7D2 256714 broad.mit.edu 36 X 19944318 19944318 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168465 exon11 c.C1459T p.R487C . . . MAP7D2 256714 broad.mit.edu 36 X 19972495 19972495 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168465 exon7 c.C787T p.R263X . . . RPS6KA3 6197 broad.mit.edu 36 X 20095714 20095714 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004586 exon17 c.C1516A p.L506I . . . DHRSX 207063 broad.mit.edu 36 X 2149178 2149178 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145177 exon7 c.G897T p.E299D . . . ZNF645 158506 broad.mit.edu 36 X 22201878 22201878 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152577 exon1 c.G849A p.A283A . . . CXorf58 254158 broad.mit.edu 36 X 23863303 23863303 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152761 exon7 c.C625T p.L209F . . . ZBED1 9189 broad.mit.edu 36 X 2417653 2417653 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004729 exon2 c.G1108A p.V370I . . . Unknown 0 broad.mit.edu 36 X 24292188 24292188 + IGR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001136234 exon1 c.C1390T p.R464C . . . PDK3 5165 broad.mit.edu 36 X 24456156 24456156 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142386 exon9 c.C895T p.R299C . . . CD99 4267 broad.mit.edu 36 X 2654308 2654308 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002414 exon8 c.C369T p.A123A . . . DCAF8L1 139425 broad.mit.edu 36 X 27909125 27909125 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017930 exon1 c.G248A p.S83N . . . IL1RAPL1 11141 broad.mit.edu 36 X 29845582 29845582 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014271 exon7 c.G859A p.E287K . . . IL1RAPL1 11141 broad.mit.edu 36 X 29883657 29883657 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014271 exon11 c.C1890T p.Y630Y . . . MAGEB2 4113 broad.mit.edu 36 X 30147107 30147107 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002364 exon2 c.C489A p.V163V . . . MAGEB1 4112 broad.mit.edu 36 X 30178934 30178934 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002363 exon4 c.C403T p.L135L . . . ARSF 416 broad.mit.edu 36 X 3029148 3029148 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004042 exon8 c.G988A p.D330N . . . CXorf21 80231 broad.mit.edu 36 X 30487504 30487504 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025159 exon3 c.G890T p.S297I . . . DMD 1756 broad.mit.edu 36 X 31857698 31857698 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004011 exon19 c.T2825C p.I942T . . . DMD 1756 broad.mit.edu 36 X 32271308 32271308 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004011 exon12 c.G1580A p.R527K . . . DMD 1756 broad.mit.edu 36 X 32340217 32340217 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004011 exon1 c.C31A p.P11T . . . MXRA5 25878 broad.mit.edu 36 X 3239372 3239372 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015419 exon7 c.C6872T p.S2291L . . . MXRA5 25878 broad.mit.edu 36 X 3248514 3248514 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015419 exon5 c.C5212A p.L1738I . . . MXRA5 25878 broad.mit.edu 36 X 3249636 3249636 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015419 exon5 c.G4090T p.E1364X . . . DMD 1756 broad.mit.edu 36 X 32523806 32523806 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004006 exon13 c.G1591T p.E531X . . . MXRA5 25878 broad.mit.edu 36 X 3258147 3258147 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015419 exon4 c.G621A p.P207P . . . DMD 1756 broad.mit.edu 36 X 32744618 32744618 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004006 exon6 c.C418A p.L140I . . . FAM47A 158724 broad.mit.edu 36 X 34058319 34058319 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_203408 exon1 c.C1998T p.D666D . . . MAGEB16 139604 broad.mit.edu 36 X 35731005 35731005 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099921 exon2 c.G771T p.E257D . . . CXorf22 170063 broad.mit.edu 36 X 35903846 35903846 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152632 exon15 c.C2608T p.R870W . . . FAM47C 442444 broad.mit.edu 36 X 36937412 36937412 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013736 exon1 c.G1008T p.K336N . . . PRRG1 5638 broad.mit.edu 36 X 37170126 37170126 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001173486 exon3 c.C123A p.F41L . . . SYTL5 94122 broad.mit.edu 36 X 37798617 37798617 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138780 exon3 c.C327T p.I109I . . . ATP6AP2 10159 broad.mit.edu 36 X 40349940 40349940 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005765 exon9 c.C1042T p.R348X . . . USP9X 8239 broad.mit.edu 36 X 40969284 40969284 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039590 exon41 c.G7011T p.L2337F . . . GPR34 2857 broad.mit.edu 36 X 41440158 41440158 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005300 exon3 c.C328T p.R110X . . . EFHC2 80258 broad.mit.edu 36 X 43922642 43922642 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025184 exon12 c.G1864A p.A622T . . . ZNF674 641339 broad.mit.edu 36 X 46245425 46245425 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190417 exon6 c.C528T p.C176C . . . RP2 6102 broad.mit.edu 36 X 46598104 46598104 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006915 exon2 c.C352T p.R118C . . . PHF16 9767 broad.mit.edu 36 X 46798732 46798732 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014735 exon9 c.C1201T p.R401W . . . PHF16 9767 broad.mit.edu 36 X 46803212 46803212 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014735 exon11 c.G2261A p.R754Q . . . RBM10 8241 broad.mit.edu 36 X 46930602 46930602 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005676 exon23 c.G2539T p.D847Y . . . UBA1 7317 broad.mit.edu 36 X 46947477 46947477 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153280 exon13 c.C1339T p.R447C . . . USP11 8237 broad.mit.edu 36 X 46992159 46992159 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004651 exon21 c.C2778A p.F926L . . . ZNF157 7712 broad.mit.edu 36 X 47157560 47157560 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003446 exon4 c.G1144T p.G382X . . . ZNF41 7592 broad.mit.edu 36 X 47192420 47192420 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153380 exon5 c.C1693T p.R565C . . . SYN1 6853 broad.mit.edu 36 X 47349355 47349355 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133499 exon5 c.T740C p.I247T . . . CFP 5199 broad.mit.edu 36 X 47370728 47370728 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002621 exon8 c.C1075T p.R359X . . . ZNF81 347344 broad.mit.edu 36 X 47660146 47660146 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_007137 exon5 c.T1157G p.F386C . . . ZNF182 7569 broad.mit.edu 36 X 47721634 47721634 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006962 exon7 c.G796A p.E266K . . . ZNF630 57232 broad.mit.edu 36 X 47803171 47803171 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001190255 exon5 c.G1562T p.R521I . . . GATA1 2623 broad.mit.edu 36 X 48537369 48537369 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002049 exon6 c.G1096T p.G366C . . . HDAC6 10013 broad.mit.edu 36 X 48546262 48546262 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006044 exon3 c.C134A p.P45H . . . HDAC6 10013 broad.mit.edu 36 X 48566882 48566882 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006044 exon25 c.G3129T p.Q1043H . . . GRIPAP1 56850 broad.mit.edu 36 X 48732308 48732308 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020137 exon7 c.C616A p.L206I . . . CACNA1F 778 broad.mit.edu 36 X 48970441 48970441 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005183 exon9 c.A1211G p.Y404C . . . CLCN5 1184 broad.mit.edu 36 X 49741583 49741583 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001127899 exon13 c.C1815T p.I605I . . . AKAP4 8852 broad.mit.edu 36 X 49844028 49844028 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003886 exon5 c.G2076A p.A692A . . . CCNB3 85417 broad.mit.edu 36 X 50069124 50069124 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033031 exon5 c.G1215T p.E405D . . . CCNB3 85417 broad.mit.edu 36 X 50069483 50069483 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033031 exon5 c.C1574T p.P525L . . . DGKK 139189 broad.mit.edu 36 X 50138379 50138379 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001013742 exon21 c.C2913A p.I971I . . . TSPYL2 64061 broad.mit.edu 36 X 53131149 53131149 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022117 exon5 c.C1159A p.L387M . . . RIBC1 158787 broad.mit.edu 36 X 53474440 53474440 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031745 exon7 c.G1035A p.Q345Q . . . HUWE1 10075 broad.mit.edu 36 X 53577735 53577735 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031407 exon83 c.G12980A p.R4327Q . . . HUWE1 10075 broad.mit.edu 36 X 53591642 53591642 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031407 exon68 c.G10353T p.E3451D . . . WNK3 65267 broad.mit.edu 36 X 54280341 54280341 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001002838 exon20 c.G4242A p.E1414E . . . WNK3 65267 broad.mit.edu 36 X 54294816 54294816 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001002838 exon14 c.G2397T p.E799D . . . FGD1 2245 broad.mit.edu 36 X 54498619 54498619 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004463 exon12 c.G2002A p.E668K . . . GNL3L 54552 broad.mit.edu 36 X 54575730 54575730 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019067 exon2 c.G6T p.M2I . . . ALAS2 212 broad.mit.edu 36 X 55060697 55060697 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037967 exon6 c.C839A p.S280Y . . . USP51 158880 broad.mit.edu 36 X 55530637 55530637 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201286 exon2 c.C1461A p.I487I . . . USP51 158880 broad.mit.edu 36 X 55530699 55530699 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201286 exon2 c.G1399T p.D467Y . . . ZXDA 7789 broad.mit.edu 36 X 57952385 57952385 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_007156 exon1 c.A1195C p.T399P . . . NLGN4X 57502 broad.mit.edu 36 X 5831228 5831228 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020742 exon5 c.C1491T p.F497F . . . ARHGEF9 23229 broad.mit.edu 36 X 62802596 62802596 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001173480 exon6 c.G645A p.S215S . . . FAM123B 139285 broad.mit.edu 36 X 63328433 63328433 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152424 exon2 c.C1459T p.L487L . . . FAM123B 139285 broad.mit.edu 36 X 63328673 63328673 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152424 exon2 c.G1219T p.E407X . . . FAM123B 139285 broad.mit.edu 36 X 63329218 63329218 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152424 exon2 c.G674T p.R225I . . . MTMR8 55613 broad.mit.edu 36 X 63405404 63405404 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017677 exon14 c.G1853A p.S618N . . . MTMR8 55613 broad.mit.edu 36 X 63480312 63480312 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017677 exon8 c.A879C p.K293N . . . MTMR8 55613 broad.mit.edu 36 X 63485350 63485350 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017677 exon6 c.G647C p.C216S . . . MTMR8 55613 broad.mit.edu 36 X 63491489 63491489 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017677 exon4 c.G361T p.E121X . . . HEPH 9843 broad.mit.edu 36 X 65400245 65400245 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130860 exon20 c.G3243T p.E1081D . . . HEPH 9843 broad.mit.edu 36 X 65403071 65403071 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130860 exon21 c.G3315T p.K1105N . . . PJA1 64219 broad.mit.edu 36 X 68297918 68297918 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001032396 exon2 c.G1724A p.G575D . . . PJA1 64219 broad.mit.edu 36 X 68299487 68299487 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001032396 exon2 c.C155T p.S52L . . . EDA 1896 broad.mit.edu 36 X 68753235 68753235 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005609 exon1 c.G358T p.E120X . . . AWAT2 158835 broad.mit.edu 36 X 69178512 69178512 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002254 exon7 c.G873T p.K291N . . . AWAT2 158835 broad.mit.edu 36 X 69180071 69180071 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002254 exon4 c.G454T p.E152X . . . OTUD6A 139562 broad.mit.edu 36 X 69199621 69199621 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207320 exon1 c.C522T p.T174T . . . IGBP1 3476 broad.mit.edu 36 X 69270550 69270550 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001551 exon2 c.C28T p.P10S . . . AWAT1 158833 broad.mit.edu 36 X 69372333 69372333 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013579 exon2 c.C119A p.S40Y . . . DLG3 1741 broad.mit.edu 36 X 69586021 69586021 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021120 exon3 c.A496T p.I166F . . . DLG3 1741 broad.mit.edu 36 X 69629118 69629118 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021120 exon12 c.C1720T p.R574X . . . TEX11 56159 broad.mit.edu 36 X 69666550 69666550 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003811 exon30 c.C2590A p.L864I . . . TEX11 56159 broad.mit.edu 36 X 69877333 69877333 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003811 exon12 c.T831C p.D277D . . . TEX11 56159 broad.mit.edu 36 X 69943315 69943315 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001003811 exon10 c.G702T p.K234N . . . FOXO4 4303 broad.mit.edu 36 X 70233363 70233363 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005938 exon1 c.C260T p.A87V . . . NLGN3 54413 broad.mit.edu 36 X 70305943 70305943 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166660 exon6 c.C1698T p.I566I . . . HDHD1 8226 broad.mit.edu 36 X 7033671 7033671 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001178135 exon2 c.G270A p.A90A . . . ZMYM3 9203 broad.mit.edu 36 X 70381434 70381434 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171162 exon19 c.C3006A p.L1002L . . . TAF1 6872 broad.mit.edu 36 X 70520630 70520630 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138923 exon13 c.C2038A p.L680I . . . TAF1 6872 broad.mit.edu 36 X 70524864 70524864 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138923 exon16 c.G2477A p.R826Q . . . TAF1 6872 broad.mit.edu 36 X 70530793 70530793 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138923 exon22 c.C3376T p.R1126W . . . NHSL2 340527 broad.mit.edu 36 X 71276883 71276883 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013627 exon6 c.C2760A p.S920R . . . ERCC6L 54821 broad.mit.edu 36 X 71344298 71344298 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017669 exon2 c.G1044T p.K348N . . . PHKA1 5255 broad.mit.edu 36 X 71719015 71719015 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172436 exon29 c.A3240C p.E1080D . . . PHKA1 5255 broad.mit.edu 36 X 71739700 71739700 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172436 exon25 c.C2734T p.R912X . . . PHKA1 5255 broad.mit.edu 36 X 71741905 71741905 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172436 exon24 c.G2579A p.R860Q . . . NAP1L2 4674 broad.mit.edu 36 X 72349793 72349793 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021963 exon1 c.G1261A p.V421I . . . RLIM 51132 broad.mit.edu 36 X 73728716 73728716 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_183353 exon5 c.C1159T p.R387C . . . KIAA2022 340533 broad.mit.edu 36 X 73880153 73880153 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008537 exon3 c.C964T p.R322X . . . KIAA2022 340533 broad.mit.edu 36 X 73880450 73880450 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008537 exon3 c.C667T p.P223S . . . ABCB7 22 broad.mit.edu 36 X 74198901 74198901 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004299 exon14 c.C1925T p.S642L . . . ZDHHC15 158866 broad.mit.edu 36 X 74561279 74561279 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146256 exon7 c.T642G p.F214L . . . MAGEE2 139599 broad.mit.edu 36 X 74921417 74921417 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_138703 exon1 c.G195A p.P65P . . . MAGEE1 57692 broad.mit.edu 36 X 75565864 75565864 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020932 exon1 c.C1137T p.S379S . . . MAGEE1 57692 broad.mit.edu 36 X 75566700 75566700 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020932 exon1 c.G1973T p.R658I . . . MAGEE1 57692 broad.mit.edu 36 X 75567454 75567454 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020932 exon1 c.C2727A p.T909T . . . VCX 26609 broad.mit.edu 36 X 7771750 7771750 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013452 exon3 c.G314T p.S105I . . . LPAR4 2846 broad.mit.edu 36 X 77897456 77897456 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005296 exon2 c.G434A p.R145Q . . . FAM46D 169966 broad.mit.edu 36 X 79585173 79585173 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001170574 exon5 c.A479C p.K160T . . . FAM46D 169966 broad.mit.edu 36 X 79585738 79585738 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001170574 exon5 c.T1044G p.F348L . . . BRWD3 254065 broad.mit.edu 36 X 79886345 79886345 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153252 exon8 c.C655T p.R219C . . . HMGN5 79366 broad.mit.edu 36 X 80257238 80257238 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030763 exon7 c.G415A p.E139K . . . CYLC1 1538 broad.mit.edu 36 X 83013185 83013185 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021118 exon3 c.G128T p.R43I . . . HDX 139324 broad.mit.edu 36 X 83463648 83463648 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177479 exon11 c.G1978T p.E660X . . . HDX 139324 broad.mit.edu 36 X 83485969 83485969 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001177479 exon7 c.G1605T p.E535D . . . HDX 139324 broad.mit.edu 36 X 83610312 83610312 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177479 exon4 c.G1075T p.D359Y . . . HDX 139324 broad.mit.edu 36 X 83610483 83610483 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177479 exon4 c.G904T p.D302Y . . . CHM 1121 broad.mit.edu 36 X 85035897 85035897 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000390 exon12 c.C1462T p.R488W . . . CHM 1121 broad.mit.edu 36 X 85042810 85042810 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000390 exon10 c.C1284A p.I428I . . . DACH2 117154 broad.mit.edu 36 X 85290417 85290417 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_053281 exon1 c.T137G p.F46C . . . DACH2 117154 broad.mit.edu 36 X 85856281 85856281 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_053281 exon6 c.G1006T p.A336S . . . FAM9B 171483 broad.mit.edu 36 X 8957356 8957356 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_205849 exon5 c.G385T p.E129X . . . PABPC5 140886 broad.mit.edu 36 X 90577584 90577584 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080832 exon2 c.G352T p.D118Y . . . RPA4 29935 broad.mit.edu 36 X 96026078 96026078 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013347 exon1 c.G113T p.R38I . . . DIAPH2 1730 broad.mit.edu 36 X 96571344 96571344 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006729 exon26 c.C3185T p.A1062V . . . PCDH19 57526 broad.mit.edu 36 X 99438021 99438021 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001105243 exon5 c.G3216T p.E1072D . . . TSPAN6 7105 broad.mit.edu 36 X 99774189 99774189 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003270 exon6 c.G618T p.E206D . . . RIF1 55183 broad.mit.edu 36 2 152029073 152029073 + Frame_Shift_Del DEL A - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001177664 exon30 c.4793delA p.E1598fs . . . GRHL1 29841 broad.mit.edu 36 2 10018906 10018906 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198182 exon4 c.G559A p.D187N . . . GRHL1 29841 broad.mit.edu 36 2 10021535 10021535 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198182 exon6 c.G816A p.T272T . . . CHST10 9486 broad.mit.edu 36 2 100376642 100376642 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004854 exon7 c.G568T p.D190Y . . . MAP4K4 9448 broad.mit.edu 36 2 101808297 101808297 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145687 exon5 c.G391A p.A131T . . . MAP4K4 9448 broad.mit.edu 36 2 101869991 101869991 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145687 exon28 c.G3115T p.E1039X . . . IL1R2 7850 broad.mit.edu 36 2 101998911 101998911 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173343 exon4 c.G479A p.R160H . . . IL1R2 7850 broad.mit.edu 36 2 102005138 102005138 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173343 exon6 c.C746A p.S249Y . . . IL1R1 3554 broad.mit.edu 36 2 102159446 102159446 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000877 exon11 c.C1505T p.S502L . . . IL1RL2 8808 broad.mit.edu 36 2 102215991 102215991 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003854 exon10 c.C1272T p.F424F . . . IL1RL2 8808 broad.mit.edu 36 2 102217964 102217964 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003854 exon11 c.C1473T p.I491I . . . IL1RL1 9173 broad.mit.edu 36 2 102323057 102323057 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003856 exon4 c.C340A p.P114T . . . IL18R1 8809 broad.mit.edu 36 2 102369817 102369817 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003855 exon7 c.C874A p.L292I . . . IL18RAP 8807 broad.mit.edu 36 2 102434746 102434746 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003853 exon12 c.C1473A p.I491I . . . MFSD9 84804 broad.mit.edu 36 2 102701461 102701461 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032718 exon6 c.C1275T p.I425I . . . HPCAL1 3241 broad.mit.edu 36 2 10484311 10484311 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_134421 exon6 c.C495A p.S165S . . . ODC1 4953 broad.mit.edu 36 2 10501731 10501731 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002539 exon5 c.G390T p.M130I . . . GPR45 11250 broad.mit.edu 36 2 105224854 105224854 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007227 exon1 c.C107T p.S36F . . . GPR45 11250 broad.mit.edu 36 2 105225184 105225184 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007227 exon1 c.G437A p.R146H . . . FHL2 2274 broad.mit.edu 36 2 105344287 105344287 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201555 exon8 c.G725A p.R242Q . . . UXS1 80146 broad.mit.edu 36 2 106128155 106128155 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025076 exon6 c.G380T p.R127I . . . SLC5A7 60482 broad.mit.edu 36 2 107975870 107975870 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021815 exon4 c.C303A p.F101L . . . SNTG2 54221 broad.mit.edu 36 2 1084066 1084066 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018968 exon4 c.G295A p.V99I . . . GCC2 9648 broad.mit.edu 36 2 108453084 108453084 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181453 exon6 c.G867T p.K289N . . . GCC2 9648 broad.mit.edu 36 2 108454867 108454867 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181453 exon6 c.G2650T p.E884X . . . GCC2 9648 broad.mit.edu 36 2 108482590 108482590 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181453 exon22 c.G4932A p.T1644T . . . RANBP2 5903 broad.mit.edu 36 2 108735902 108735902 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006267 exon13 c.C1772A p.S591Y . . . RANBP2 5903 broad.mit.edu 36 2 108746181 108746181 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006267 exon20 c.G2754A p.P918P . . . RANBP2 5903 broad.mit.edu 36 2 108747118 108747118 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006267 exon20 c.C3691T p.R1231C . . . RANBP2 5903 broad.mit.edu 36 2 108747362 108747362 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006267 exon20 c.T3935C p.V1312A . . . RANBP2 5903 broad.mit.edu 36 2 108749334 108749334 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006267 exon20 c.G5907T p.K1969N . . . RANBP2 5903 broad.mit.edu 36 2 108749406 108749406 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006267 exon20 c.C5979T p.S1993S . . . RANBP2 5903 broad.mit.edu 36 2 108750559 108750559 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006267 exon20 c.T7132G p.L2378V . . . RANBP2 5903 broad.mit.edu 36 2 108750731 108750731 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006267 exon20 c.T7304G p.I2435S . . . CCDC138 165055 broad.mit.edu 36 2 108770937 108770937 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_144978 exon2 c.T111G p.F37L . . . SEPT10 151011 broad.mit.edu 36 2 109661019 109661019 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178584 exon9 c.G1177T p.E393X . . . SEPT10 151011 broad.mit.edu 36 2 109682742 109682742 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_178584 exon5 c.T632C p.V211A . . . NPHP1 4867 broad.mit.edu 36 2 110283320 110283320 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128178 exon6 c.G622T p.E208X . . . ACOXL 55289 broad.mit.edu 36 2 111272696 111272696 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001142807 exon6 c.G384T p.K128N . . . PQLC3 130814 broad.mit.edu 36 2 11221827 11221827 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152391 exon4 c.G343T p.D115Y . . . ANAPC1 64682 broad.mit.edu 36 2 112268933 112268933 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022662 exon35 c.G4306A p.E1436K . . . MERTK 10461 broad.mit.edu 36 2 112468336 112468336 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006343 exon9 c.G1334A p.R445Q . . . ROCK2 9475 broad.mit.edu 36 2 11251894 11251894 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004850 exon29 c.C3547T p.L1183F . . . ROCK2 9475 broad.mit.edu 36 2 11256291 11256291 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004850 exon24 c.G2971T p.E991X . . . ROCK2 9475 broad.mit.edu 36 2 11259649 11259649 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004850 exon21 c.G2599A p.E867K . . . FBLN7 129804 broad.mit.edu 36 2 112633748 112633748 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153214 exon2 c.C100A p.L34I . . . FBLN7 129804 broad.mit.edu 36 2 112639117 112639117 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153214 exon3 c.G304A p.E102K . . . ROCK2 9475 broad.mit.edu 36 2 11269325 11269325 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004850 exon18 c.G2136T p.K712N . . . ZC3H6 376940 broad.mit.edu 36 2 112785918 112785918 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198581 exon5 c.G680A p.R227Q . . . ZC3H6 376940 broad.mit.edu 36 2 112805850 112805850 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198581 exon12 c.G2884T p.D962Y . . . POLR1B 84172 broad.mit.edu 36 2 113049234 113049234 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001137604 exon14 c.G2697T p.E899D . . . CKAP2L 150468 broad.mit.edu 36 2 113215054 113215054 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152515 exon8 c.G1824A p.G608G . . . CKAP2L 150468 broad.mit.edu 36 2 113226449 113226449 + Nonsense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152515 exon5 c.A1468T p.R490X . . . IL1B 3553 broad.mit.edu 36 2 113307571 113307571 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000576 exon4 c.G152A p.R51Q . . . IL1F5 26525 broad.mit.edu 36 2 113534978 113534978 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012275 exon3 c.C108A p.V36V . . . FOXD4L1 200350 broad.mit.edu 36 2 113973643 113973643 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012184 exon1 c.G340A p.A114T . . . RABL2A 11159 broad.mit.edu 36 2 114115037 114115037 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007082 exon6 c.G394A p.A132T . . . SLC35F5 80255 broad.mit.edu 36 2 114199508 114199508 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025181 exon12 c.C1167T p.F389F . . . SLC35F5 80255 broad.mit.edu 36 2 114208710 114208710 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025181 exon9 c.C843A p.T281T . . . ACTR3 10096 broad.mit.edu 36 2 114431436 114431436 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005721 exon12 c.A1191C p.K397N . . . DPP10 57628 broad.mit.edu 36 2 115999980 115999980 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178036 exon6 c.G253T p.D85Y . . . DPP10 57628 broad.mit.edu 36 2 116310756 116310756 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178036 exon25 c.G1996T p.E666X . . . GREB1 9687 broad.mit.edu 36 2 11634096 11634096 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_148903 exon5 c.C621A p.I207I . . . GREB1 9687 broad.mit.edu 36 2 11650564 11650564 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014668 exon11 c.C1557T p.I519I . . . GREB1 9687 broad.mit.edu 36 2 11691714 11691714 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014668 exon29 c.C4998A p.F1666L . . . NTSR2 23620 broad.mit.edu 36 2 11719629 11719629 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012344 exon2 c.C813A p.T271T . . . DDX18 8886 broad.mit.edu 36 2 118298681 118298681 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006773 exon8 c.C1133A p.S378Y . . . CCDC93 54520 broad.mit.edu 36 2 118423387 118423387 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019044 exon14 c.G1123T p.E375X . . . LPIN1 23175 broad.mit.edu 36 2 11842497 11842497 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145693 exon9 c.G1285A p.D429N . . . MARCO 8685 broad.mit.edu 36 2 119416365 119416365 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006770 exon1 c.C19A p.L7I . . . MARCO 8685 broad.mit.edu 36 2 119467264 119467264 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006770 exon16 c.C1347T p.D449D . . . PCDP1 200373 broad.mit.edu 36 2 120079249 120079249 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029996 exon12 c.T189C p.I63I . . . PCDP1 200373 broad.mit.edu 36 2 120101718 120101718 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029996 exon17 c.C678A p.F226L . . . TMEM177 80775 broad.mit.edu 36 2 120155072 120155072 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105199 exon2 c.C173A p.P58H . . . PTPN4 5775 broad.mit.edu 36 2 120356560 120356560 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002830 exon8 c.G478T p.D160Y . . . PTPN4 5775 broad.mit.edu 36 2 120439613 120439613 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002830 exon25 c.C2480T p.S827L . . . EPB41L5 57669 broad.mit.edu 36 2 120549535 120549535 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184937 exon6 c.C421A p.L141I . . . RALB 5899 broad.mit.edu 36 2 120763634 120763634 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002881 exon4 c.T332C p.I111T . . . RALB 5899 broad.mit.edu 36 2 120767273 120767273 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002881 exon5 c.G588T p.K196N . . . CLASP1 23332 broad.mit.edu 36 2 121837337 121837337 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001142274 exon35 c.C3886T p.R1296X . . . SNTG2 54221 broad.mit.edu 36 2 1233742 1233742 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018968 exon12 c.C981A p.S327S . . . CNTNAP5 129684 broad.mit.edu 36 2 124908608 124908608 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_130773 exon5 c.G607T p.D203Y . . . CNTNAP5 129684 broad.mit.edu 36 2 124920855 124920855 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_130773 exon6 c.C789A p.L263L . . . CNTNAP5 129684 broad.mit.edu 36 2 125238179 125238179 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_130773 exon16 c.C2515T p.R839X . . . ERCC3 2071 broad.mit.edu 36 2 127760835 127760835 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000122 exon8 c.G1256T p.R419M . . . MAP3K2 10746 broad.mit.edu 36 2 127798018 127798018 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006609 exon10 c.G768T p.E256D . . . TRIB2 28951 broad.mit.edu 36 2 12781122 12781122 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021643 exon2 c.G556A p.E186K . . . TRIB2 28951 broad.mit.edu 36 2 12798284 12798284 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021643 exon3 c.G945A p.S315S . . . MYO7B 4648 broad.mit.edu 36 2 128033772 128033772 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080527 exon2 c.C5T p.S2L . . . WDR33 55339 broad.mit.edu 36 2 128182916 128182916 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018383 exon21 c.C3586T p.R1196C . . . WDR33 55339 broad.mit.edu 36 2 128187646 128187646 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018383 exon18 c.C3289T p.R1097X . . . WDR33 55339 broad.mit.edu 36 2 128244949 128244949 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018383 exon2 c.T77G p.F26C . . . SAP130 79595 broad.mit.edu 36 2 128488850 128488850 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145928 exon5 c.C694T p.R232X . . . UGGT1 56886 broad.mit.edu 36 2 128612837 128612837 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020120 exon16 c.G1660A p.A554T . . . UGGT1 56886 broad.mit.edu 36 2 128635296 128635296 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020120 exon25 c.C2809T p.R937W . . . UGGT1 56886 broad.mit.edu 36 2 128645304 128645304 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020120 exon28 c.A3080C p.K1027T . . . UGGT1 56886 broad.mit.edu 36 2 128647889 128647889 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020120 exon30 c.A3359C p.D1120A . . . POTEF 728378 broad.mit.edu 36 2 130594189 130594189 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099771 exon3 c.G370A p.D124N . . . CCDC74B 91409 broad.mit.edu 36 2 130614408 130614408 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207310 exon5 c.G690T p.E230D . . . TUBA3E 112714 broad.mit.edu 36 2 130669261 130669261 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207312 exon3 c.G236A p.R79H . . . ARHGEF4 50649 broad.mit.edu 36 2 131405227 131405227 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015320 exon3 c.G227T p.R76I . . . POTEE 445582 broad.mit.edu 36 2 131692565 131692565 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001083538 exon1 c.G120T p.K40N . . . TUBA3D 113457 broad.mit.edu 36 2 131954464 131954464 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080386 exon4 c.G728A p.R243Q . . . NCKAP5 344148 broad.mit.edu 36 2 133255122 133255122 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207363 exon15 c.C5022T p.A1674A . . . NCKAP5 344148 broad.mit.edu 36 2 133255195 133255195 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207363 exon15 c.C4949A p.S1650Y . . . NCKAP5 344148 broad.mit.edu 36 2 133256244 133256244 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207363 exon14 c.C4610T p.A1537V . . . NCKAP5 344148 broad.mit.edu 36 2 133257444 133257444 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207363 exon14 c.C3410A p.A1137D . . . NCKAP5 344148 broad.mit.edu 36 2 133258869 133258869 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207363 exon14 c.C1985A p.S662Y . . . CCNT2 905 broad.mit.edu 36 2 135426718 135426718 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058241 exon8 c.G741A p.T247T . . . CCNT2 905 broad.mit.edu 36 2 135427799 135427799 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_058241 exon9 c.C1304A p.S435Y . . . YSK4 80122 broad.mit.edu 36 2 135455324 135455324 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025052 exon9 c.A3457C p.N1153H YSK4,stomach,NS,Substitution - Missense,+1 . . YSK4 80122 broad.mit.edu 36 2 135457803 135457803 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025052 exon8 c.G3135T p.K1045N . . . YSK4 80122 broad.mit.edu 36 2 135460754 135460754 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025052 exon7 c.A2158G p.K720E . . . YSK4 80122 broad.mit.edu 36 2 135461926 135461926 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025052 exon7 c.C986A p.S329Y . . . YSK4 80122 broad.mit.edu 36 2 135462205 135462205 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025052 exon7 c.G707T p.R236I . . . RAB3GAP1 22930 broad.mit.edu 36 2 135567677 135567677 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012233 exon5 c.A306C p.Q102H . . . RAB3GAP1 22930 broad.mit.edu 36 2 135589360 135589360 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012233 exon7 c.G587T p.R196I . . . ZRANB3 84083 broad.mit.edu 36 2 135681842 135681842 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032143 exon19 c.C2641A p.L881I . . . R3HDM1 23518 broad.mit.edu 36 2 136090732 136090732 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015361 exon5 c.C238T p.R80W . . . R3HDM1 23518 broad.mit.edu 36 2 136113133 136113133 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015361 exon14 c.G1190T p.S397I . . . LCT 3938 broad.mit.edu 36 2 136262401 136262401 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002299 exon17 c.G5747A p.R1916Q . . . LCT 3938 broad.mit.edu 36 2 136282752 136282752 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002299 exon8 c.G3635T p.R1212I . . . LCT 3938 broad.mit.edu 36 2 136283972 136283972 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002299 exon8 c.C2415T p.F805F . . . LCT 3938 broad.mit.edu 36 2 136310739 136310739 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002299 exon1 c.C471T p.F157F . . . MCM6 4175 broad.mit.edu 36 2 136330803 136330803 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005915 exon11 c.G1591A p.D531N . . . THSD7B 80731 broad.mit.edu 36 2 137530797 137530797 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080427 exon2 c.C384T p.C128C . . . THSD7B 80731 broad.mit.edu 36 2 137634300 137634300 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080427 exon5 c.C1324T p.P442S . . . THSD7B 80731 broad.mit.edu 36 2 137716514 137716514 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080427 exon9 c.G2075A p.R692Q . . . LRP1B 53353 broad.mit.edu 36 2 140771950 140771950 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon84 c.C12864A p.V4288V . . . LRP1B 53353 broad.mit.edu 36 2 140797950 140797950 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018557 exon81 c.C12496T p.R4166C . . . LRP1B 53353 broad.mit.edu 36 2 140838732 140838732 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon72 c.G11099T p.G3700V . . . LRP1B 53353 broad.mit.edu 36 2 140984050 140984050 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon52 c.G8315A p.R2772H . . . LRP1B 53353 broad.mit.edu 36 2 141000316 141000316 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon48 c.G7836T p.Q2612H . . . LRP1B 53353 broad.mit.edu 36 2 141008075 141008075 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon47 c.G7747A p.E2583K . . . LRP1B 53353 broad.mit.edu 36 2 141075559 141075559 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon42 c.G6919A p.D2307N . . . LRP1B 53353 broad.mit.edu 36 2 141324360 141324360 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018557 exon29 c.A4720G p.K1574E . . . LRP1B 53353 broad.mit.edu 36 2 141357899 141357899 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon25 c.G4126A p.A1376T . . . LRP1B 53353 broad.mit.edu 36 2 141463658 141463658 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon17 c.A2683G p.N895D . . . LRP1B 53353 broad.mit.edu 36 2 141703444 141703444 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018557 exon6 c.A628C p.N210H . . . KYNU 8942 broad.mit.edu 36 2 143428877 143428877 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001032998 exon5 c.G402T p.M134I . . . ZEB2 9839 broad.mit.edu 36 2 144872345 144872345 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171653 exon7 c.G2807A p.G936E . . . ZEB2 9839 broad.mit.edu 36 2 144874267 144874267 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001171653 exon7 c.C885A p.F295L . . . TPO 7173 broad.mit.edu 36 2 1478807 1478807 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175721 exon11 c.G2046T p.Q682H . . . ACVR2A 92 broad.mit.edu 36 2 148389341 148389341 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001616 exon5 c.G640T p.E214X . . . ACVR2A 92 broad.mit.edu 36 2 148401299 148401299 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001616 exon11 c.G1528T p.E510X . . . MBD5 55777 broad.mit.edu 36 2 148963863 148963863 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018328 exon12 c.C3493T p.R1165W . . . KIF5C 3800 broad.mit.edu 36 2 149396196 149396196 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004522 exon2 c.C147T p.F49F . . . KIF5C 3800 broad.mit.edu 36 2 149511680 149511680 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004522 exon7 c.G539T p.R180I . . . KIF5C 3800 broad.mit.edu 36 2 149514635 149514635 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004522 exon8 c.G679A p.E227K . . . KIF5C 3800 broad.mit.edu 36 2 149526755 149526755 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004522 exon10 c.C921A p.V307V . . . KIF5C 3800 broad.mit.edu 36 2 149546166 149546166 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004522 exon13 c.C1342T p.R448C . . . KIF5C 3800 broad.mit.edu 36 2 149548460 149548460 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004522 exon14 c.C1578A p.I526I . . . KIF5C 3800 broad.mit.edu 36 2 149572779 149572779 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_004522 exon22 c.T2430G p.I810M . . . LYPD6 130574 broad.mit.edu 36 2 150002562 150002562 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195685 exon2 c.G94T p.D32Y . . . RND3 390 broad.mit.edu 36 2 151039699 151039699 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005168 exon4 c.C284T p.S95L . . . NMI 9111 broad.mit.edu 36 2 151835525 151835525 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004688 exon8 c.G852T p.K284N . . . RIF1 55183 broad.mit.edu 36 2 152028085 152028085 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001177664 exon30 c.G3805T p.E1269X . . . RIF1 55183 broad.mit.edu 36 2 152028386 152028386 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001177664 exon30 c.A4106C p.E1369A . . . NEB 4703 broad.mit.edu 36 2 152058127 152058127 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon176 c.G24751T p.E8251X . . . NEB 4703 broad.mit.edu 36 2 152058943 152058943 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon174 c.G24557A p.R8186H . . . NEB 4703 broad.mit.edu 36 2 152083771 152083771 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon155 c.C22649A p.S7550Y . . . NEB 4703 broad.mit.edu 36 2 152084507 152084507 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon154 c.G22501A p.D7501N . . . NEB 4703 broad.mit.edu 36 2 152089165 152089165 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon153 c.G22385T p.R7462I . . . NEB 4703 broad.mit.edu 36 2 152090019 152090019 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon151 c.G22176T p.K7392N . . . NEB 4703 broad.mit.edu 36 2 152098989 152098989 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon143 c.G21403A p.D7135N . . . NEB 4703 broad.mit.edu 36 2 152127396 152127396 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon120 c.G18866A p.R6289Q . . . NEB 4703 broad.mit.edu 36 2 152132212 152132212 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon114 c.C17872T p.Q5958X . . . NEB 4703 broad.mit.edu 36 2 152180859 152180859 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon76 c.A11192C p.K3731T . . . NEB 4703 broad.mit.edu 36 2 152209312 152209312 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon56 c.G7560T p.E2520D . . . NEB 4703 broad.mit.edu 36 2 152210993 152210993 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon55 c.G7433A p.R2478K . . . NEB 4703 broad.mit.edu 36 2 152227006 152227006 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon46 c.G5859T p.E1953D . . . NEB 4703 broad.mit.edu 36 2 152262334 152262334 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon14 c.C1227T p.L409L . . . NEB 4703 broad.mit.edu 36 2 152274455 152274455 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001164507 exon12 c.G996T p.E332D . . . ARL5A 26225 broad.mit.edu 36 2 152371681 152371681 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012097 exon5 c.G391T p.E131X . . . STAM2 10254 broad.mit.edu 36 2 152714979 152714979 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005843 exon2 c.G51A p.T17T . . . FMNL2 114793 broad.mit.edu 36 2 153113842 153113842 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052905 exon4 c.G344T p.R115I . . . FMNL2 114793 broad.mit.edu 36 2 153190312 153190312 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052905 exon16 c.G1952A p.R651Q . . . PRPF40A 55660 broad.mit.edu 36 2 153223752 153223752 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017892 exon24 c.T2524C p.S842P . . . PRPF40A 55660 broad.mit.edu 36 2 153236080 153236080 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017892 exon14 c.C1432A p.L478I . . . NBAS 51594 broad.mit.edu 36 2 15385868 15385868 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015909 exon37 c.C4367T p.A1456V . . . NR4A2 4929 broad.mit.edu 36 2 156893290 156893290 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006186 exon4 c.G866A p.R289H . . . GPD2 2820 broad.mit.edu 36 2 157134165 157134165 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001083112 exon11 c.A1345C p.N449H . . . GALNT5 11227 broad.mit.edu 36 2 157823107 157823107 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014568 exon1 c.G267T p.E89D . . . GALNT5 11227 broad.mit.edu 36 2 157823412 157823412 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014568 exon1 c.T572C p.V191A . . . GALNT5 11227 broad.mit.edu 36 2 157824132 157824132 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014568 exon1 c.C1292A p.S431Y . . . GALNT5 11227 broad.mit.edu 36 2 157865463 157865463 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014568 exon7 c.C2145A p.I715I . . . ACVR1C 130399 broad.mit.edu 36 2 158105927 158105927 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111031 exon7 c.C996A p.I332I . . . ACVR1C 130399 broad.mit.edu 36 2 158107597 158107597 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111031 exon6 c.G817T p.D273Y . . . ACVR1 90 broad.mit.edu 36 2 158330876 158330876 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111067 exon8 c.C869T p.S290L . . . PKP4 8502 broad.mit.edu 36 2 159167842 159167842 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003628 exon4 c.C260A p.S87X . . . PKP4 8502 broad.mit.edu 36 2 159245347 159245347 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003628 exon22 c.C3491T p.S1164L . . . TANC1 85461 broad.mit.edu 36 2 159784074 159784074 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033394 exon21 c.C3458T p.A1153V . . . TANC1 85461 broad.mit.edu 36 2 159793553 159793553 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033394 exon26 c.G4051A p.D1351N . . . WDSUB1 151525 broad.mit.edu 36 2 159800793 159800793 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152528 exon11 c.G1428T p.K476N . . . BAZ2B 29994 broad.mit.edu 36 2 159914644 159914644 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013450 exon28 c.C4684A p.L1562I . . . BAZ2B 29994 broad.mit.edu 36 2 159949950 159949950 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013450 exon23 c.C3648A p.F1216L . . . BAZ2B 29994 broad.mit.edu 36 2 159977176 159977176 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013450 exon14 c.C2593T p.R865W . . . MYCN 4613 broad.mit.edu 36 2 15999737 15999737 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005378 exon2 c.G100T p.D34Y . . . MYCN 4613 broad.mit.edu 36 2 16003393 16003393 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005378 exon3 c.G1118A p.R373Q . . . LY75 4065 broad.mit.edu 36 2 160369857 160369857 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002349 exon35 c.C5113T p.R1705X . . . LY75 4065 broad.mit.edu 36 2 160384550 160384550 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198760 exon29 c.C4086A p.T1362T . . . PLA2R1 22925 broad.mit.edu 36 2 160514447 160514447 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007366 exon25 c.C3627T p.C1209C . . . PLA2R1 22925 broad.mit.edu 36 2 160540851 160540851 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007366 exon17 c.G2569T p.E857X . . . PLA2R1 22925 broad.mit.edu 36 2 160609598 160609598 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007366 exon2 c.G426A p.R142R . . . TANK 10010 broad.mit.edu 36 2 161795782 161795782 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199135 exon7 c.C575T p.A192V . . . TANK 10010 broad.mit.edu 36 2 161796118 161796118 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199135 exon7 c.A911C p.K304T . . . TBR1 10716 broad.mit.edu 36 2 161982962 161982962 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006593 exon3 c.T852C p.N284N . . . SLC4A10 57282 broad.mit.edu 36 2 162404583 162404583 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001178016 exon5 c.G349A p.E117K . . . SLC4A10 57282 broad.mit.edu 36 2 162468863 162468863 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001178016 exon13 c.C1489A p.L497I . . . SLC4A10 57282 broad.mit.edu 36 2 162529052 162529052 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001178016 exon22 c.C2967A p.V989V . . . FAP 2191 broad.mit.edu 36 2 162737970 162737970 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004460 exon24 c.C2042A p.T681N . . . KCNH7 90134 broad.mit.edu 36 2 162988148 162988148 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173162 exon8 c.C2077A p.L693I . . . KCNH7 90134 broad.mit.edu 36 2 163000018 163000018 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173162 exon7 c.C1869T p.F623F . . . KCNH7 90134 broad.mit.edu 36 2 163000248 163000248 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173162 exon7 c.C1639A p.L547I . . . PXDN 7837 broad.mit.edu 36 2 1631003 1631004 + Missense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_012293 exon17 c.3555_3556TA . . . . PXDN 7837 broad.mit.edu 36 2 1632145 1632145 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012293 exon17 c.C2414T p.T805M . . . KCNH7 90134 broad.mit.edu 36 2 163401496 163401496 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173162 exon2 c.G104T p.R35I . . . KCNH7 90134 broad.mit.edu 36 2 163403209 163403209 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173162 exon1 c.T66G p.F22L . . . PXDN 7837 broad.mit.edu 36 2 1636482 1636482 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012293 exon16 c.G2029T p.E677X . . . GRB14 2888 broad.mit.edu 36 2 165062237 165062237 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004490 exon10 c.T1114C p.S372P . . . GRB14 2888 broad.mit.edu 36 2 165091829 165091829 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004490 exon4 c.G544T p.E182X . . . COBLL1 22837 broad.mit.edu 36 2 165260066 165260066 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014900 exon12 c.A2196C p.K732N . . . COBLL1 22837 broad.mit.edu 36 2 165260521 165260521 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014900 exon12 c.G1741T p.E581X . . . SLC38A11 151258 broad.mit.edu 36 2 165480684 165480684 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173512 exon6 c.T429C p.I143I . . . SCN3A 6328 broad.mit.edu 36 2 165677715 165677715 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006922 exon21 c.C3769A p.L1257I . . . SCN3A 6328 broad.mit.edu 36 2 165702865 165702865 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006922 exon15 c.G2161T p.E721X . . . SCN2A 6326 broad.mit.edu 36 2 165874166 165874166 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021007 exon6 c.C664T p.L222F . . . SCN2A 6326 broad.mit.edu 36 2 165909473 165909473 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040143 exon15 c.G2725T p.E909X . . . SCN2A 6326 broad.mit.edu 36 2 165919023 165919023 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040143 exon16 c.G2995A p.E999K . . . SCN2A 6326 broad.mit.edu 36 2 165919421 165919421 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040143 exon16 c.C3393T p.S1131S . . . SCN2A 6326 broad.mit.edu 36 2 165953385 165953385 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040143 exon26 c.G4823A p.G1608E . . . SCN2A 6326 broad.mit.edu 36 2 165953466 165953466 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040143 exon26 c.G4904A p.R1635Q . . . CSRNP3 80034 broad.mit.edu 36 2 166244023 166244023 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172173 exon7 c.G1272T p.K424N . . . TTC21B 79809 broad.mit.edu 36 2 166448616 166448616 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024753 exon26 c.T3618G p.I1206M . . . SCN1A 6323 broad.mit.edu 36 2 166600855 166600855 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165964 exon16 c.T3294A p.N1098K . . . SCN1A 6323 broad.mit.edu 36 2 166606111 166606111 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165964 exon13 c.T2207C p.V736A . . . SCN1A 6323 broad.mit.edu 36 2 166607105 166607105 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165964 exon12 c.C2035A p.P679T . . . SCN1A 6323 broad.mit.edu 36 2 166609897 166609897 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165964 exon10 c.A1564C p.K522Q . . . SCN1A 6323 broad.mit.edu 36 2 166623325 166623325 + Splice_Site SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001165964 exon2 c.A384G p.S128S . . . SCN9A 6335 broad.mit.edu 36 2 166763463 166763463 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002977 exon27 c.G5899T p.D1967Y . . . SCN9A 6335 broad.mit.edu 36 2 166768746 166768746 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_002977 exon26 c.T4706G p.I1569S . . . SCN9A 6335 broad.mit.edu 36 2 166841849 166841849 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002977 exon16 c.C2731T p.R911C . . . SCN9A 6335 broad.mit.edu 36 2 166849448 166849448 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002977 exon12 c.G1735T p.G579X . . . SCN9A 6335 broad.mit.edu 36 2 166851264 166851264 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002977 exon11 c.G1430T p.R477I . . . SCN9A 6335 broad.mit.edu 36 2 166858104 166858104 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_002977 exon9 c.T990C p.C330C . . . SCN7A 6332 broad.mit.edu 36 2 166971106 166971106 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002976 exon25 c.C4279A p.L1427I . . . SCN7A 6332 broad.mit.edu 36 2 167042228 167042228 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002976 exon2 c.G225T p.K75N . . . XIRP2 129446 broad.mit.edu 36 2 167468637 167468637 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199143 exon2 c.C399T p.Y133Y . . . XIRP2 129446 broad.mit.edu 36 2 167804700 167804700 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001199143 exon7 c.T1047G p.I349M . . . XIRP2 129446 broad.mit.edu 36 2 167808514 167808514 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.T1700G p.I567S . . . XIRP2 129446 broad.mit.edu 36 2 167810820 167810820 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.G4006T p.D1336Y . . . XIRP2 129446 broad.mit.edu 36 2 167811978 167811978 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.G5164A p.V1722I . . . XIRP2 129446 broad.mit.edu 36 2 167813170 167813170 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.T6356G p.F2119C . . . XIRP2 129446 broad.mit.edu 36 2 167814003 167814003 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.C7189T p.R2397W . . . XIRP2 129446 broad.mit.edu 36 2 167814683 167814683 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.G7869T p.K2623N . . . XIRP2 129446 broad.mit.edu 36 2 167814989 167814989 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.C8175A p.F2725L . . . XIRP2 129446 broad.mit.edu 36 2 167816444 167816444 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199144 exon7 c.G9630A p.S3210S . . . XIRP2 129446 broad.mit.edu 36 2 167823617 167823617 + 3'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001199143 exon11 c.C2414T p.S805L . . . LASS6 253782 broad.mit.edu 36 2 169259793 169259793 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203463 exon6 c.G595T p.D199Y . . . LASS6 253782 broad.mit.edu 36 2 169279761 169279761 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203463 exon7 c.T614G p.F205C . . . NOSTRIN 115677 broad.mit.edu 36 2 169429619 169429619 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001171631 exon21 c.G1585T p.E529X . . . G6PC2 57818 broad.mit.edu 36 2 169467214 169467214 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021176 exon2 c.C232A p.H78N . . . ABCB11 8647 broad.mit.edu 36 2 169509402 169509402 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003742 exon21 c.T2569G p.L857V . . . ABCB11 8647 broad.mit.edu 36 2 169558583 169558583 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003742 exon8 c.C667T p.R223C . . . LRP2 4036 broad.mit.edu 36 2 169717666 169717666 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004525 exon67 c.G12350A p.R4117H . . . LRP2 4036 broad.mit.edu 36 2 169733389 169733389 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004525 exon61 c.C11541T p.F3847F . . . LRP2 4036 broad.mit.edu 36 2 169734545 169734545 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004525 exon60 c.C11410A p.Q3804K . . . LRP2 4036 broad.mit.edu 36 2 169738768 169738768 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004525 exon56 c.C10921T p.R3641W . . . LRP2 4036 broad.mit.edu 36 2 169785256 169785256 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004525 exon34 c.C5602A p.L1868I . . . LRP2 4036 broad.mit.edu 36 2 169798308 169798308 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004525 exon30 c.G4957T p.D1653Y . . . LRP2 4036 broad.mit.edu 36 2 169858976 169858976 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004525 exon6 c.G580A p.E194K . . . KBTBD10 10324 broad.mit.edu 36 2 170074561 170074561 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006063 exon1 c.G27T p.E9D . . . KBTBD10 10324 broad.mit.edu 36 2 170074740 170074740 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006063 exon1 c.C206T p.A69V . . . KBTBD10 10324 broad.mit.edu 36 2 170075407 170075407 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006063 exon1 c.C873A p.Y291X . . . KBTBD10 10324 broad.mit.edu 36 2 170079333 170079333 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006063 exon2 c.G1114A p.D372N . . . FASTKD1 79675 broad.mit.edu 36 2 170111115 170111115 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024622 exon8 c.G1560T p.M520I . . . C2orf77 129881 broad.mit.edu 36 2 170239745 170239745 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001085447 exon3 c.G346T p.E116X . . . KLHL23 151230 broad.mit.edu 36 2 170300498 170300498 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199290 exon4 c.G728T p.R243I . . . METTL5 29081 broad.mit.edu 36 2 170377257 170377257 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014168 exon6 c.C547T p.R183X . . . METTL5 29081 broad.mit.edu 36 2 170385894 170385894 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014168 exon3 c.C360T p.F120F . . . UBR3 130507 broad.mit.edu 36 2 170566168 170566168 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_172070 exon27 c.C4027T p.R1343W . . . MYO3B 140469 broad.mit.edu 36 2 170779209 170779209 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001171642 exon4 c.G396T p.M132I . . . MYO3B 140469 broad.mit.edu 36 2 170956289 170956289 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001171642 exon15 c.T1591G p.F531V . . . MYO3B 140469 broad.mit.edu 36 2 170957206 170957206 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001171642 exon16 c.C1746T p.F582F . . . MYO3B 140469 broad.mit.edu 36 2 170966437 170966437 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001171642 exon18 c.G2119A p.E707K . . . MYO3B 140469 broad.mit.edu 36 2 170967658 170967658 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001171642 exon19 c.T2184A p.N728K . . . GAD1 2571 broad.mit.edu 36 2 171410295 171410295 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000817 exon8 c.C785T p.A262V . . . GORASP2 26003 broad.mit.edu 36 2 171519417 171519417 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015530 exon6 c.G578A p.G193D . . . TLK1 9874 broad.mit.edu 36 2 171558684 171558684 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012290 exon21 c.G2153A p.R718Q . . . TLK1 9874 broad.mit.edu 36 2 171571573 171571573 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012290 exon16 c.C1581A p.F527L . . . TLK1 9874 broad.mit.edu 36 2 171614577 171614577 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012290 exon10 c.C973T p.L325F . . . TLK1 9874 broad.mit.edu 36 2 171614831 171614831 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012290 exon9 c.C832T p.L278F . . . DCAF17 80067 broad.mit.edu 36 2 172041651 172041651 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025000 exon11 c.C1127A p.S376Y . . . CYBRD1 79901 broad.mit.edu 36 2 172106403 172106403 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024843 exon2 c.C256A p.H86N . . . DYNC1I2 1781 broad.mit.edu 36 2 172292619 172292619 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001378 exon12 c.C1039A p.L347I . . . SLC25A12 8604 broad.mit.edu 36 2 172409189 172409189 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003705 exon5 c.G401A p.R134Q . . . HAT1 8520 broad.mit.edu 36 2 172490309 172490309 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003642 exon2 c.G24T p.E8D . . . HAT1 8520 broad.mit.edu 36 2 172530212 172530212 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003642 exon5 c.C417T p.F139F . . . ITGA6 3655 broad.mit.edu 36 2 173042207 173042207 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000210 exon4 c.G496T p.D166Y . . . ITGA6 3655 broad.mit.edu 36 2 173064278 173064278 + Silent SNP G A A rs61757097 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000210 exon22 c.G2862A p.S954S . . . PDK1 5163 broad.mit.edu 36 2 173168824 173168824 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002610 exon11 c.G1192T p.E398X . . . ZAK 51776 broad.mit.edu 36 2 173742836 173742836 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016653 exon3 c.C217A p.L73I . . . ZAK 51776 broad.mit.edu 36 2 173764016 173764016 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016653 exon7 c.C447A p.I149I . . . ZAK 51776 broad.mit.edu 36 2 173794380 173794380 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133646 exon12 c.C1244A p.S415Y . . . SP3 6670 broad.mit.edu 36 2 174528669 174528669 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172712 exon4 c.G808A p.D270N . . . GPR155 151556 broad.mit.edu 36 2 175018147 175018147 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033045 exon14 c.C2017A p.L673I . . . GPR155 151556 broad.mit.edu 36 2 175041913 175041913 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001033045 exon6 c.T1155C p.D385D . . . GPR155 151556 broad.mit.edu 36 2 175046182 175046182 + Missense_Mutation SNP A C C rs61735115 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001033045 exon4 c.T617G p.I206S . . . WIPF1 7456 broad.mit.edu 36 2 175144706 175144706 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077269 exon5 c.C1073A p.P358H . . . WIPF1 7456 broad.mit.edu 36 2 175158515 175158515 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001077269 exon2 c.G33A p.P11P . . . CHRNA1 1134 broad.mit.edu 36 2 175332520 175332520 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000079 exon2 c.A131G p.D44G . . . RAD51AP2 729475 broad.mit.edu 36 2 17560607 17560607 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099218 exon1 c.G2557T p.D853Y . . . RAD51AP2 729475 broad.mit.edu 36 2 17561405 17561405 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001099218 exon1 c.T1759G p.L587V . . . RAD51AP2 729475 broad.mit.edu 36 2 17562080 17562080 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001099218 exon1 c.G1084A p.D362N . . . RAD51AP2 729475 broad.mit.edu 36 2 17562970 17562970 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001099218 exon1 c.A194G p.E65G . . . ATF2 1386 broad.mit.edu 36 2 175666172 175666172 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001880 exon12 c.G1048T p.D350Y . . . KIAA1715 80856 broad.mit.edu 36 2 176543747 176543747 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030650 exon6 c.G348T p.R116S . . . KIAA1715 80856 broad.mit.edu 36 2 176565374 176565374 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030650 exon4 c.G88T p.E30X . . . HOXD10 3236 broad.mit.edu 36 2 176690318 176690318 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002148 exon1 c.G511A p.E171K . . . HOXD9 3235 broad.mit.edu 36 2 176696993 176696993 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014213 exon2 c.G903T p.E301D . . . HOXD9 3235 broad.mit.edu 36 2 176697128 176697128 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014213 exon2 c.G1038T p.E346D . . . HOXD3 3232 broad.mit.edu 36 2 176744795 176744795 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006898 exon3 c.C846A p.Y282X . . . HOXD1 3231 broad.mit.edu 36 2 176763085 176763085 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024501 exon2 c.G956A p.G319D . . . MYT1L 23040 broad.mit.edu 36 2 1774765 1774765 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015025 exon25 c.T3436G p.F1146V . . . HNRNPA3 220988 broad.mit.edu 36 2 177789481 177789481 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_194247 exon5 c.G558T p.Q186H . . . NFE2L2 4780 broad.mit.edu 36 2 177804045 177804045 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006164 exon5 c.C1532T p.A511V . . . NFE2L2 4780 broad.mit.edu 36 2 177804439 177804439 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006164 exon5 c.G1138T p.E380X . . . NFE2L2 4780 broad.mit.edu 36 2 177806255 177806255 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006164 exon3 c.C371T p.A124V . . . AGPS 8540 broad.mit.edu 36 2 178010002 178010002 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003659 exon5 c.G611A p.R204Q . . . TTC30B 150737 broad.mit.edu 36 2 178124095 178124095 + Nonsense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152517 exon1 c.T1643A p.L548X . . . TTC30B 150737 broad.mit.edu 36 2 178124390 178124390 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152517 exon1 c.T1348G p.S450A . . . TTC30A 92104 broad.mit.edu 36 2 178190602 178190602 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152275 exon1 c.C1074T p.L358L . . . PDE11A 50940 broad.mit.edu 36 2 178389883 178389883 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077196 exon6 c.C324A p.I108I . . . PDE11A 50940 broad.mit.edu 36 2 178413338 178413338 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001077196 exon3 c.G54T p.E18D . . . PDE11A 50940 broad.mit.edu 36 2 178644841 178644841 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016953 exon1 c.C570T p.I190I . . . RBM45 129831 broad.mit.edu 36 2 178696524 178696524 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152945 exon6 c.G883A p.A295T . . . OSBPL6 114880 broad.mit.edu 36 2 178955472 178955472 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032523 exon16 c.C1613T p.S538F . . . PRKRA 8575 broad.mit.edu 36 2 179017425 179017425 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001139517 exon3 c.G333T p.K111N . . . PLEKHA3 65977 broad.mit.edu 36 2 179066938 179066938 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019091 exon4 c.G426T p.E142D . . . TTN 7273 broad.mit.edu 36 2 179106225 179106225 + Missense_Mutation SNP G A A rs72629785 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon186 c.C76167T p.N25389N . . . TTN 7273 broad.mit.edu 36 2 179108701 179108701 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon186 c.G73691A p.G24564D . . . TTN 7273 broad.mit.edu 36 2 179112186 179112186 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon181 c.G71526A p.S23842S . . . TTN 7273 broad.mit.edu 36 2 179112692 179112692 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon180 c.C71150T p.A23717V . . . TTN 7273 broad.mit.edu 36 2 179112836 179112836 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon180 c.A71006G p.Q23669R . . . TTN 7273 broad.mit.edu 36 2 179115249 179115249 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon177 c.C70284T p.V23428V . . . TTN 7273 broad.mit.edu 36 2 179117186 179117186 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon173 c.G68820A p.P22940P . . . TTN 7273 broad.mit.edu 36 2 179120505 179120505 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon167 c.G66898A p.A22300T . . . TTN 7273 broad.mit.edu 36 2 179120625 179120625 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon167 c.C66778T p.R22260C . . . TTN 7273 broad.mit.edu 36 2 179121768 179121768 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon167 c.G65635A p.A21879T . . . TTN 7273 broad.mit.edu 36 2 179125338 179125338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon163 c.C63339T p.F21113F . . . TTN 7273 broad.mit.edu 36 2 179126163 179126163 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon163 c.C62514T p.L20838L . . . TTN 7273 broad.mit.edu 36 2 179127585 179127585 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon160 c.G61539A p.A20513A . . . TTN 7273 broad.mit.edu 36 2 179131019 179131019 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon156 c.A60112C p.I20038L . . . TTN 7273 broad.mit.edu 36 2 179133127 179133127 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.A58782T p.K19594N . . . TTN 7273 broad.mit.edu 36 2 179133476 179133476 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.G58433T p.R19478M . . . TTN 7273 broad.mit.edu 36 2 179134080 179134080 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.C57829T p.P19277S . . . TTN 7273 broad.mit.edu 36 2 179135043 179135043 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.C56866A p.L18956I . . . TTN 7273 broad.mit.edu 36 2 179136003 179136003 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.G55906C p.V18636L . . . TTN 7273 broad.mit.edu 36 2 179137222 179137222 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.C54687A p.F18229L . . . TTN 7273 broad.mit.edu 36 2 179138600 179138600 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.C53309A p.S17770Y . . . TTN 7273 broad.mit.edu 36 2 179139551 179139551 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.G52358T p.R17453I . . . TTN 7273 broad.mit.edu 36 2 179139769 179139769 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.C52140A p.V17380V . . . TTN 7273 broad.mit.edu 36 2 179140147 179140147 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.T51762C p.F17254F . . . TTN 7273 broad.mit.edu 36 2 179140258 179140258 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.G51651T p.K17217N . . . TTN 7273 broad.mit.edu 36 2 179141014 179141014 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.G50895T p.K16965N . . . TTN 7273 broad.mit.edu 36 2 179141733 179141733 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon154 c.C50176T p.P16726S . . . TTN 7273 broad.mit.edu 36 2 179153315 179153315 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon145 c.C39841T p.P13281S . . . TTN 7273 broad.mit.edu 36 2 179157337 179157337 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon139 c.G37991A p.S12664N . . . TTN 7273 broad.mit.edu 36 2 179162821 179162821 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon132 c.G34681A p.D11561N . . . TTN 7273 broad.mit.edu 36 2 179163565 179163565 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon132 c.C33937T p.L11313L . . . TTN 7273 broad.mit.edu 36 2 179165483 179165483 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon129 c.G32299A p.E10767K . . . TTN 7273 broad.mit.edu 36 2 179166001 179166001 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon128 c.C31895T p.S10632L . . . TTN 7273 broad.mit.edu 36 2 179166790 179166790 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon126 c.G31287T p.K10429N . . . TTN 7273 broad.mit.edu 36 2 179171009 179171009 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon121 c.G29938T p.G9980X . . . TTN 7273 broad.mit.edu 36 2 179171884 179171884 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon119 c.G29603T p.R9868I . . . TTN 7273 broad.mit.edu 36 2 179178229 179178229 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon108 c.G26725T p.D8909Y . . . TTN 7273 broad.mit.edu 36 2 179180054 179180054 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon106 c.G26325T p.K8775N . . . TTN 7273 broad.mit.edu 36 2 179180238 179180238 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon106 c.A26141C p.K8714T . . . TTN 7273 broad.mit.edu 36 2 179182521 179182521 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon101 c.G24566T p.R8189I . . . TTN 7273 broad.mit.edu 36 2 179185108 179185108 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon95 c.G23080A p.A7694T . . . TTN 7273 broad.mit.edu 36 2 179187126 179187126 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon90 c.T22048A p.L7350I . . . TTN 7273 broad.mit.edu 36 2 179190126 179190126 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon83 c.A20646T p.E6882D . . . TTN 7273 broad.mit.edu 36 2 179190811 179190811 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon81 c.C20317T p.R6773X . . . TTN 7273 broad.mit.edu 36 2 179192980 179192980 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon77 c.G19214A p.R6405H . . . TTN 7273 broad.mit.edu 36 2 179224475 179224475 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon161 c.A32195C p.K10732T . . . TTN 7273 broad.mit.edu 36 2 179224672 179224672 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon160 c.C32127T p.V10709V . . . TTN 7273 broad.mit.edu 36 2 179244126 179244126 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon151 c.G31341T p.E10447D . . . TTN 7273 broad.mit.edu 36 2 179250818 179250818 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon143 c.G30334T p.E10112X . . . TTN 7273 broad.mit.edu 36 2 179255718 179255718 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon132 c.C29313T p.Y9771Y . . . TTN 7273 broad.mit.edu 36 2 179258519 179258519 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon125 c.C28631A p.S9544Y . . . TTN 7273 broad.mit.edu 36 2 179279582 179279582 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon99 c.A25532C p.K8511T . . . TTN 7273 broad.mit.edu 36 2 179279878 179279878 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon98 c.G25358T p.R8453I . . . TTN 7273 broad.mit.edu 36 2 179283749 179283749 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon95 c.C24588T p.G8196G . . . TTN 7273 broad.mit.edu 36 2 179285408 179285408 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon92 c.G23754A p.T7918T . . . TTN 7273 broad.mit.edu 36 2 179287385 179287385 + Nonsense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon88 c.T22629G p.Y7543X . . . TTN 7273 broad.mit.edu 36 2 179287502 179287502 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon88 c.C22512T p.V7504V . . . TTN 7273 broad.mit.edu 36 2 179292705 179292705 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon79 c.C20027T p.A6676V . . . TTN 7273 broad.mit.edu 36 2 179293562 179293562 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon77 c.A19440G p.E6480E . . . TTN 7273 broad.mit.edu 36 2 179296275 179296275 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon72 c.G17972T p.R5991I . . . TTN 7273 broad.mit.edu 36 2 179301570 179301570 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon63 c.G15596T p.R5199I . . . TTN 7273 broad.mit.edu 36 2 179304798 179304798 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon55 c.T13317C p.Y4439Y . . . TTN 7273 broad.mit.edu 36 2 179305483 179305483 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon53 c.C12818T p.S4273L . . . TTN 7273 broad.mit.edu 36 2 179305577 179305577 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133378 exon53 c.G12724A p.G4242S . . . TTN 7273 broad.mit.edu 36 2 179311179 179311179 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon46 c.G13157A p.R4386Q . . . TTN 7273 broad.mit.edu 36 2 179312724 179312724 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon45 c.G12392T p.R4131I . . . TTN 7273 broad.mit.edu 36 2 179313618 179313618 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon45 c.C11498A p.S3833X . . . TTN 7273 broad.mit.edu 36 2 179314315 179314315 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003319 exon45 c.G10801T p.E3601X . . . TTN 7273 broad.mit.edu 36 2 179320562 179320562 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon46 c.C14810T p.S4937L . . . TTN 7273 broad.mit.edu 36 2 179320989 179320989 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon46 c.C14383T p.P4795S . . . TTN 7273 broad.mit.edu 36 2 179321566 179321566 + Intron SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon46 c.T13806C p.Y4602Y . . . TTN 7273 broad.mit.edu 36 2 179322206 179322206 + Intron SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon46 c.T13166C p.V4389A . . . TTN 7273 broad.mit.edu 36 2 179323089 179323089 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon46 c.G12283T p.D4095Y . . . TTN 7273 broad.mit.edu 36 2 179323512 179323512 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133379 exon46 c.G11860T p.E3954X . . . TTN 7273 broad.mit.edu 36 2 179323911 179323911 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133379 exon46 c.G11461T p.D3821Y . . . TTN 7273 broad.mit.edu 36 2 179324214 179324214 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133379 exon46 c.C11158A p.L3720I . . . TTN 7273 broad.mit.edu 36 2 179329510 179329510 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133437 exon44 c.G10425A p.E3475E . . . TTN 7273 broad.mit.edu 36 2 179340890 179340890 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon40 c.G9312T p.K3104N . . . TTN 7273 broad.mit.edu 36 2 179344302 179344302 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon34 c.G7997A p.R2666K . . . TTN 7273 broad.mit.edu 36 2 179349470 179349470 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon28 c.C5366A p.S1789Y . . . TTN 7273 broad.mit.edu 36 2 179349985 179349985 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133379 exon28 c.C4851T p.I1617I . . . TTN 7273 broad.mit.edu 36 2 179350684 179350684 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon25 c.T4472G p.F1491C . . . TTN 7273 broad.mit.edu 36 2 179352257 179352257 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133379 exon23 c.C3907A p.L1303I . . . TTN 7273 broad.mit.edu 36 2 179353102 179353102 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon22 c.C3599A p.P1200H . . . TTN 7273 broad.mit.edu 36 2 179359080 179359080 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_133379 exon14 c.A2110C p.T704P . . . TTN 7273 broad.mit.edu 36 2 179373632 179373632 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133379 exon4 c.C318T p.F106F . . . CCDC141 285025 broad.mit.edu 36 2 179410152 179410152 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173648 exon23 c.G4039T p.E1347X . . . CCDC141 285025 broad.mit.edu 36 2 179418679 179418679 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173648 exon22 c.A3393C p.E1131D . . . CCDC141 285025 broad.mit.edu 36 2 179426487 179426487 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173648 exon20 c.A3170C p.K1057T . . . CCDC141 285025 broad.mit.edu 36 2 179429353 179429353 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173648 exon18 c.A2741C p.K914T . . . CCDC141 285025 broad.mit.edu 36 2 179441130 179441130 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173648 exon16 c.G2442A p.P814P . . . CCDC141 285025 broad.mit.edu 36 2 179442143 179442143 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173648 exon15 c.G2340T p.Q780H . . . SESTD1 91404 broad.mit.edu 36 2 179682996 179682996 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178123 exon18 c.G1966A p.E656K . . . SESTD1 91404 broad.mit.edu 36 2 179756110 179756110 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178123 exon3 c.G106A p.E36K . . . ZNF385B 151126 broad.mit.edu 36 2 180117903 180117903 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001113397 exon2 c.C64T p.R22C . . . ITGA4 3676 broad.mit.edu 36 2 182068875 182068875 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000885 exon14 c.C1506A p.F502L . . . ITGA4 3676 broad.mit.edu 36 2 182104664 182104664 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000885 exon25 c.C2700A p.F900L . . . MYT1L 23040 broad.mit.edu 36 2 1822018 1822018 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015025 exon21 c.G2984T p.W995L . . . NEUROD1 4760 broad.mit.edu 36 2 182251649 182251649 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002500 exon2 c.G184A p.E62K . . . SSFA2 6744 broad.mit.edu 36 2 182482930 182482930 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006751 exon9 c.G1473A p.T491T . . . PPP1R1C 151242 broad.mit.edu 36 2 182560863 182560863 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001080545 exon2 c.A134G p.N45S . . . PDE1A 5136 broad.mit.edu 36 2 182813125 182813125 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005019 exon3 c.C355T p.R119W . . . MYT1L 23040 broad.mit.edu 36 2 1834441 1834441 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015025 exon19 c.G2747A p.G916D . . . NCKAP1 10787 broad.mit.edu 36 2 183575219 183575219 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013436 exon5 c.G393T p.K131N . . . DUSP19 142679 broad.mit.edu 36 2 183660078 183660078 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080876 exon3 c.G339T p.K113N . . . DUSP19 142679 broad.mit.edu 36 2 183668508 183668508 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080876 exon4 c.T531G p.F177L . . . ZNF804A 91752 broad.mit.edu 36 2 185171986 185171986 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194250 exon1 c.C55T p.R19C . . . ZNF804A 91752 broad.mit.edu 36 2 185509452 185509452 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194250 exon4 c.G1084T p.V362F . . . ZNF804A 91752 broad.mit.edu 36 2 185510268 185510268 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194250 exon4 c.C1900A p.L634I . . . ZNF804A 91752 broad.mit.edu 36 2 185511595 185511595 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194250 exon4 c.C3227T p.P1076L . . . NT5C1B 93034 broad.mit.edu 36 2 18629330 18629330 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033253 exon4 c.C654T p.Y218Y . . . FSIP2 401024 broad.mit.edu 36 2 186379073 186379073 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173651 exon17 c.G17062A p.V5688I . . . FSIP2 401024 broad.mit.edu 36 2 186381042 186381042 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173651 exon17 c.C19031A p.S6344Y . . . FSIP2 401024 broad.mit.edu 36 2 186381738 186381738 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173651 exon17 c.G19727T p.R6576I . . . ITGAV 3685 broad.mit.edu 36 2 187229269 187229269 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144999 exon17 c.C1477T p.R493X . . . ITGAV 3685 broad.mit.edu 36 2 187240699 187240699 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144999 exon24 c.A2246G p.N749S . . . ITGAV 3685 broad.mit.edu 36 2 187248817 187248817 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144999 exon28 c.C2708A p.S903Y . . . FAM171B 165215 broad.mit.edu 36 2 187334689 187334689 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_177454 exon8 c.G1375A p.D459N . . . FAM171B 165215 broad.mit.edu 36 2 187335385 187335385 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177454 exon8 c.G2071T p.D691Y . . . ZSWIM2 151112 broad.mit.edu 36 2 187401464 187401464 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182521 exon9 c.C1394A p.T465K . . . ZSWIM2 151112 broad.mit.edu 36 2 187410333 187410333 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182521 exon5 c.C688A p.L230I . . . TFPI 7035 broad.mit.edu 36 2 188051723 188051723 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001032281 exon7 c.A681C p.Q227H . . . TFPI 7035 broad.mit.edu 36 2 188076729 188076729 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006287 exon2 c.A12C p.T4T . . . GULP1 51454 broad.mit.edu 36 2 189102134 189102134 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016315 exon6 c.T228G p.I76M . . . COL3A1 1281 broad.mit.edu 36 2 189557832 189557832 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000090 exon2 c.C181A p.L61I . . . COL5A2 1290 broad.mit.edu 36 2 189631821 189631821 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000393 exon32 c.G2129T p.R710I . . . ANKAR 150709 broad.mit.edu 36 2 190292706 190292706 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144708 exon11 c.G2388A p.E796E . . . ANKAR 150709 broad.mit.edu 36 2 190301037 190301037 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144708 exon13 c.C2846T p.S949L . . . ANKAR 150709 broad.mit.edu 36 2 190311646 190311646 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144708 exon19 c.C3693A p.V1231V . . . PMS1 5378 broad.mit.edu 36 2 190368812 190368812 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000534 exon3 c.A205C p.M69L . . . STAT4 6775 broad.mit.edu 36 2 191627488 191627488 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003151 exon14 c.G1224C p.K408N . . . STAT4 6775 broad.mit.edu 36 2 191721131 191721131 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003151 exon2 c.T44G p.L15W . . . MYO1B 4430 broad.mit.edu 36 2 191936804 191936804 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012223 exon10 c.C871T p.R291X . . . MYO1B 4430 broad.mit.edu 36 2 191966143 191966143 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012223 exon20 c.C2176A p.L726I . . . MYO1B 4430 broad.mit.edu 36 2 191973356 191973356 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012223 exon22 c.C2299T p.R767X . . . TMEFF2 23671 broad.mit.edu 36 2 192526738 192526738 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016192 exon9 c.C940T p.P314S . . . TMEFF2 23671 broad.mit.edu 36 2 192572115 192572115 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016192 exon6 c.T601C p.S201P . . . SLC39A10 57181 broad.mit.edu 36 2 196253927 196253927 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001127257 exon2 c.C916T p.R306X . . . DNAH7 56171 broad.mit.edu 36 2 196344770 196344770 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon61 c.C11292T p.F3764F . . . DNAH7 56171 broad.mit.edu 36 2 196430389 196430389 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon44 c.G8371A p.E2791K . . . DNAH7 56171 broad.mit.edu 36 2 196445303 196445303 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon40 c.C6549T p.F2183F . . . DNAH7 56171 broad.mit.edu 36 2 196483008 196483008 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon25 c.A4092G p.G1364G . . . DNAH7 56171 broad.mit.edu 36 2 196499452 196499452 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon22 c.T3555C p.C1185C . . . DNAH7 56171 broad.mit.edu 36 2 196573804 196573804 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon12 c.C1222A p.L408I . . . DNAH7 56171 broad.mit.edu 36 2 196597430 196597430 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon8 c.G711T p.K237N . . . DNAH7 56171 broad.mit.edu 36 2 196620358 196620358 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018897 exon5 c.C361T p.R121X . . . HECW2 57520 broad.mit.edu 36 2 196844196 196844196 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020760 exon17 c.C3301T p.R1101C . . . CCDC150 284992 broad.mit.edu 36 2 197219370 197219370 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080539 exon2 c.G73A p.A25T . . . CCDC150 284992 broad.mit.edu 36 2 197229733 197229733 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080539 exon3 c.G308A p.R103Q . . . GTF3C3 9330 broad.mit.edu 36 2 197339575 197339575 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012086 exon17 c.T2497G p.Y833D . . . GTF3C3 9330 broad.mit.edu 36 2 197358538 197358538 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012086 exon7 c.G913T p.D305Y . . . PGAP1 80055 broad.mit.edu 36 2 197458842 197458842 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024989 exon11 c.A1181C p.N394T . . . PGAP1 80055 broad.mit.edu 36 2 197489473 197489473 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024989 exon3 c.G391T p.E131X . . . ANKRD44 91526 broad.mit.edu 36 2 197656454 197656454 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195144 exon14 c.G1341A p.A447A . . . COQ10B 80219 broad.mit.edu 36 2 198033038 198033038 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025147 exon2 c.G242T p.R81I . . . HSPD1 3329 broad.mit.edu 36 2 198061340 198061340 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002156 exon10 c.C1336T p.R446X . . . MOBKL3 25843 broad.mit.edu 36 2 198123290 198123290 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199482 exon7 c.C385T p.R129C . . . RFTN2 130132 broad.mit.edu 36 2 198248418 198248418 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144629 exon1 c.G10A p.G4R . . . PLCL1 5334 broad.mit.edu 36 2 198656979 198656979 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006226 exon2 c.G493T p.E165X . . . PLCL1 5334 broad.mit.edu 36 2 198657892 198657892 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006226 exon2 c.G1406A p.R469Q . . . PLCL1 5334 broad.mit.edu 36 2 198658433 198658433 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006226 exon2 c.C1947T p.I649I . . . PLCL1 5334 broad.mit.edu 36 2 198658752 198658752 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006226 exon2 c.G2266A p.G756R . . . SATB2 23314 broad.mit.edu 36 2 199901760 199901760 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172509 exon8 c.G1292A p.R431H . . . C2orf60 129450 broad.mit.edu 36 2 200506084 200506084 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001039693 exon8 c.G899A p.R300Q . . . KCTD18 130535 broad.mit.edu 36 2 201066216 201066216 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152387 exon6 c.G688T p.E230X . . . SGOL2 151246 broad.mit.edu 36 2 201144849 201144849 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001160046 exon7 c.A1535C p.K512T . . . SGOL2 151246 broad.mit.edu 36 2 201146515 201146515 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001160046 exon7 c.T3201G p.C1067W . . . AOX1 316 broad.mit.edu 36 2 201232241 201232241 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159 exon28 c.C3280A p.L1094I . . . AOX1 316 broad.mit.edu 36 2 201241641 201241641 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001159 exon33 c.C3668A p.S1223Y . . . CLK1 1195 broad.mit.edu 36 2 201430942 201430942 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001162407 exon6 c.T790G p.F264V . . . FAM126B 285172 broad.mit.edu 36 2 201565302 201565302 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173822 exon10 c.C778A p.L260I . . . CFLAR 8837 broad.mit.edu 36 2 201718392 201718392 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127183 exon6 c.G653A p.G218D . . . CASP10 843 broad.mit.edu 36 2 201782099 201782099 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032974 exon9 c.G984A p.T328T . . . ALS2CR12 130540 broad.mit.edu 36 2 201880568 201880568 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127391 exon11 c.C798T p.F266F . . . TRAK2 66008 broad.mit.edu 36 2 201960715 201960715 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015049 exon13 c.G1652A p.R551Q . . . STRADB 55437 broad.mit.edu 36 2 202051564 202051564 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018571 exon10 c.G1065T p.E355D . . . ALS2CR11 151254 broad.mit.edu 36 2 202060705 202060705 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152525 exon15 c.G1747T p.E583X . . . ALS2CR11 151254 broad.mit.edu 36 2 202144985 202144985 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152525 exon8 c.A757C p.K253Q . . . ALS2CR11 151254 broad.mit.edu 36 2 202174734 202174734 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152525 exon4 c.C489T p.F163F . . . ALS2CR4 65062 broad.mit.edu 36 2 202202815 202202815 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001044385 exon7 c.T559G p.F187V . . . MPP4 58538 broad.mit.edu 36 2 202223044 202223044 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_033066 exon19 c.C1471A p.H491N . . . MPP4 58538 broad.mit.edu 36 2 202258917 202258917 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033066 exon6 c.T462C p.I154I . . . ALS2 57679 broad.mit.edu 36 2 202297270 202297270 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020919 exon21 c.A3505G p.I1169V . . . SDC1 6382 broad.mit.edu 36 2 20268601 20268601 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002997 exon2 c.C132A p.F44L . . . BMPR2 659 broad.mit.edu 36 2 203087909 203087909 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001204 exon5 c.G583A p.E195K . . . BMPR2 659 broad.mit.edu 36 2 203129010 203129010 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001204 exon12 c.A2377G p.T793A . . . BMPR2 659 broad.mit.edu 36 2 203129452 203129452 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001204 exon12 c.C2819A p.S940Y . . . PUM2 23369 broad.mit.edu 36 2 20317232 20317232 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015317 exon19 c.T2895C p.T965T . . . ICA1L 130026 broad.mit.edu 36 2 203390401 203390401 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138468 exon7 c.G669A p.S223S . . . ICA1L 130026 broad.mit.edu 36 2 203390464 203390464 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138468 exon7 c.G606T p.K202N . . . PUM2 23369 broad.mit.edu 36 2 20353956 20353956 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015317 exon9 c.C1229T p.A410V . . . PUM2 23369 broad.mit.edu 36 2 20371723 20371723 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015317 exon5 c.G622T p.A208S . . . NBEAL1 65065 broad.mit.edu 36 2 203782250 203782250 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001114132 exon52 c.T7658C p.I2553T . . . PUM2 23369 broad.mit.edu 36 2 20390600 20390600 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015317 exon1 c.G3T p.M1I . . . ABI2 10152 broad.mit.edu 36 2 203953326 203953326 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005759 exon3 c.C436A p.L146I . . . RAPH1 65059 broad.mit.edu 36 2 204062939 204062939 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203365 exon4 c.G345A p.T115T . . . CD28 940 broad.mit.edu 36 2 204307857 204307857 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006139 exon4 c.G640A p.D214N . . . CTLA4 1493 broad.mit.edu 36 2 204445681 204445681 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037631 exon3 c.G463T p.E155X . . . NRP2 8828 broad.mit.edu 36 2 206256269 206256269 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201266 exon1 c.T10C p.F4L . . . NRP2 8828 broad.mit.edu 36 2 206295509 206295509 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201266 exon4 c.C496A p.P166T . . . NRP2 8828 broad.mit.edu 36 2 206316458 206316458 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201266 exon9 c.C1578T p.V526V . . . NRP2 8828 broad.mit.edu 36 2 206325845 206325845 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201266 exon12 c.G1945A p.D649N . . . NRP2 8828 broad.mit.edu 36 2 206367799 206367799 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_201266 exon17 c.G2568T p.K856N . . . NDUFS1 4719 broad.mit.edu 36 2 206699751 206699751 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005006 exon17 c.C1947A p.V649V . . . GPR1 2825 broad.mit.edu 36 2 206749169 206749169 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098199 exon3 c.C1048A p.L350I . . . ZDBF2 57683 broad.mit.edu 36 2 206870249 206870249 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon4 c.G95T p.R32I . . . ZDBF2 57683 broad.mit.edu 36 2 206878263 206878263 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G766T p.E256X . . . ZDBF2 57683 broad.mit.edu 36 2 206878908 206878908 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G1411T p.E471X . . . ZDBF2 57683 broad.mit.edu 36 2 206879432 206879432 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G1935T p.K645N . . . ZDBF2 57683 broad.mit.edu 36 2 206880684 206880684 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G3187T p.E1063X . . . ZDBF2 57683 broad.mit.edu 36 2 206881433 206881433 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G3936T p.E1312D . . . ZDBF2 57683 broad.mit.edu 36 2 206881656 206881656 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G4159A p.E1387K . . . ZDBF2 57683 broad.mit.edu 36 2 206881771 206881771 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.C4274A p.S1425Y . . . ZDBF2 57683 broad.mit.edu 36 2 206882819 206882819 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G5322T p.K1774N . . . ZDBF2 57683 broad.mit.edu 36 2 206884201 206884201 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020923 exon5 c.G6704A p.R2235H . . . DYTN 391475 broad.mit.edu 36 2 207224807 207224807 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001093730 exon12 c.G1717T p.A573S . . . DYTN 391475 broad.mit.edu 36 2 207280394 207280394 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001093730 exon3 c.C173A p.S58Y . . . MDH1B 130752 broad.mit.edu 36 2 207319379 207319379 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039845 exon8 c.G1233A p.P411P . . . MDH1B 130752 broad.mit.edu 36 2 207328449 207328449 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039845 exon5 c.C439A p.L147I . . . MDH1B 130752 broad.mit.edu 36 2 207333884 207333884 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039845 exon2 c.C121A p.P41T . . . FASTKD2 22868 broad.mit.edu 36 2 207339862 207339862 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136193 exon2 c.G200T p.R67I . . . FASTKD2 22868 broad.mit.edu 36 2 207347233 207347233 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136193 exon7 c.C1294T p.R432X . . . FASTKD2 22868 broad.mit.edu 36 2 207361862 207361862 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001136193 exon10 c.G1888T p.D630Y . . . C2orf43 60526 broad.mit.edu 36 2 20803356 20803356 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021925 exon5 c.C559T p.R187X . . . FAM119A 151194 broad.mit.edu 36 2 208186037 208186037 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127395 exon4 c.G635T p.R212I . . . PIKFYVE 200576 broad.mit.edu 36 2 208899014 208899014 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015040 exon20 c.A3234G p.R1078R . . . PIKFYVE 200576 broad.mit.edu 36 2 208899262 208899262 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015040 exon20 c.G3482T p.R1161I . . . PIKFYVE 200576 broad.mit.edu 36 2 208918141 208918141 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015040 exon33 c.G5089A p.E1697K . . . PIKFYVE 200576 broad.mit.edu 36 2 208923021 208923021 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015040 exon36 c.G5403T p.K1801N . . . PTH2R 5746 broad.mit.edu 36 2 209063611 209063611 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005048 exon12 c.T1218C p.G406G . . . PTH2R 5746 broad.mit.edu 36 2 209066316 209066316 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005048 exon13 c.G1340T p.R447I . . . MAP2 4133 broad.mit.edu 36 2 210268955 210268955 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002374 exon7 c.C3816A p.T1272T . . . MAP2 4133 broad.mit.edu 36 2 210269995 210269995 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002374 exon9 c.C4497A p.L1499L . . . C2orf67 151050 broad.mit.edu 36 2 210597119 210597119 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152519 exon14 c.T2616G p.P872P . . . C2orf67 151050 broad.mit.edu 36 2 210726819 210726819 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152519 exon2 c.T733G p.L245V . . . ACADL 33 broad.mit.edu 36 2 210793700 210793700 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001608 exon2 c.G149A p.R50Q . . . APOB 338 broad.mit.edu 36 2 21081767 21081767 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000384 exon26 c.G11478A p.T3826T . . . APOB 338 broad.mit.edu 36 2 21082732 21082732 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000384 exon26 c.C10513A p.L3505I . . . APOB 338 broad.mit.edu 36 2 21084138 21084138 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000384 exon26 c.C9107A p.S3036Y . . . APOB 338 broad.mit.edu 36 2 21087110 21087110 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000384 exon26 c.C6135A p.A2045A . . . APOB 338 broad.mit.edu 36 2 21087629 21087629 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000384 exon26 c.C5616T p.I1872I . . . APOB 338 broad.mit.edu 36 2 21089756 21089756 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000384 exon25 c.C3997T p.R1333X . . . APOB 338 broad.mit.edu 36 2 21104861 21104861 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000384 exon13 c.C1672T p.R558X . . . CPS1 1373 broad.mit.edu 36 2 211129717 211129717 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001875 exon1 c.G15T p.L5F . . . CPS1 1373 broad.mit.edu 36 2 211175275 211175275 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122634 exon6 c.G459T p.E153D . . . CPS1 1373 broad.mit.edu 36 2 211181497 211181497 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122634 exon9 c.G1007A p.R336Q . . . APOB 338 broad.mit.edu 36 2 21118847 21118847 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000384 exon3 c.C128T p.A43V . . . CPS1 1373 broad.mit.edu 36 2 211227036 211227036 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122634 exon19 c.G2170T p.E724X . . . CPS1 1373 broad.mit.edu 36 2 211233526 211233526 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122634 exon22 c.G2476T p.D826Y . . . ERBB4 2066 broad.mit.edu 36 2 211959994 211959994 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005235 exon27 c.G3310T p.D1104Y . . . ERBB4 2066 broad.mit.edu 36 2 211960082 211960082 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005235 exon27 c.A3222G p.E1074E . . . ERBB4 2066 broad.mit.edu 36 2 211997209 211997209 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005235 exon23 c.G2782T p.E928X . . . SPAG16 79582 broad.mit.edu 36 2 213870300 213870300 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025436 exon3 c.G253T p.E85X . . . SPAG16 79582 broad.mit.edu 36 2 213913181 213913181 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024532 exon6 c.C586T p.R196X . . . VWC2L 402117 broad.mit.edu 36 2 214987507 214987507 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080500 exon2 c.C345A p.F115L . . . BARD1 580 broad.mit.edu 36 2 215353984 215353984 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000465 exon4 c.G859T p.E287X . . . ABCA12 26154 broad.mit.edu 36 2 215510548 215510548 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon51 c.G7473T p.K2491N . . . ABCA12 26154 broad.mit.edu 36 2 215518047 215518047 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon49 c.G7266A p.P2422P . . . ABCA12 26154 broad.mit.edu 36 2 215529703 215529703 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon42 c.G6162A p.A2054A . . . ABCA12 26154 broad.mit.edu 36 2 215531407 215531407 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon41 c.G5956A p.D1986N . . . ABCA12 26154 broad.mit.edu 36 2 215532022 215532022 + Nonsense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon40 c.T5910G p.Y1970X . . . ABCA12 26154 broad.mit.edu 36 2 215547811 215547811 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon35 c.G5404A p.A1802T . . . ABCA12 26154 broad.mit.edu 36 2 215555191 215555191 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon30 c.G4544A p.R1515Q . . . ABCA12 26154 broad.mit.edu 36 2 215555342 215555342 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon30 c.G4393T p.D1465Y . . . ABCA12 26154 broad.mit.edu 36 2 215574687 215574687 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon21 c.A2703C p.L901F . . . ABCA12 26154 broad.mit.edu 36 2 215583411 215583411 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173076 exon18 c.C2361T p.D787D . . . FN1 2335 broad.mit.edu 36 2 215946362 215946362 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212476 exon37 c.G5632A p.E1878K . . . FN1 2335 broad.mit.edu 36 2 215948291 215948291 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212476 exon36 c.G5505A p.P1835P . . . FN1 2335 broad.mit.edu 36 2 215980146 215980146 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212476 exon18 c.G2662T p.E888X . . . SMARCAL1 50485 broad.mit.edu 36 2 217048282 217048282 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014140 exon15 c.C2290T p.R764W . . . TNS1 7145 broad.mit.edu 36 2 218383271 218383271 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022648 exon29 c.G4737A p.S1579S . . . TNS1 7145 broad.mit.edu 36 2 218386184 218386184 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022648 exon27 c.C4641T p.F1547F . . . TNS1 7145 broad.mit.edu 36 2 218387896 218387896 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022648 exon25 c.G4401T p.E1467D . . . TNS1 7145 broad.mit.edu 36 2 218390878 218390878 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022648 exon24 c.G4110A p.P1370P . . . TNS1 7145 broad.mit.edu 36 2 218453902 218453902 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022648 exon16 c.G1018A p.D340N . . . CXCR2 3579 broad.mit.edu 36 2 218707827 218707827 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001557 exon3 c.C58A p.L20I . . . ARPC2 10109 broad.mit.edu 36 2 218811797 218811797 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_005731 exon5 c.A434G p.H145R . . . C2orf62 375307 broad.mit.edu 36 2 218935724 218935724 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198559 exon6 c.C485A p.S162Y . . . TTLL4 9654 broad.mit.edu 36 2 219320106 219320106 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014640 exon9 c.A2111C p.K704T . . . TTLL4 9654 broad.mit.edu 36 2 219327104 219327104 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014640 exon20 c.A3348G p.K1116K . . . PRKAG3 53632 broad.mit.edu 36 2 219402995 219402995 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017431 exon4 c.G583A p.D195N . . . CCDC108 255101 broad.mit.edu 36 2 219600759 219600759 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194302 exon13 c.C2068T p.R690X . . . CCDC108 255101 broad.mit.edu 36 2 219602452 219602452 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194302 exon11 c.G1567A p.A523T . . . NHEJ1 79840 broad.mit.edu 36 2 219720626 219720626 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024782 exon4 c.C526T p.R176X . . . SLC23A3 151295 broad.mit.edu 36 2 219734965 219734965 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001144890 exon12 c.C1767A p.S589S . . . ABCB6 10058 broad.mit.edu 36 2 219787361 219787361 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005689 exon7 c.C1380T p.F460F . . . ABCB6 10058 broad.mit.edu 36 2 219791104 219791104 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005689 exon1 c.A536C p.D179A . . . ATG9A 79065 broad.mit.edu 36 2 219795629 219795629 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024085 exon10 c.C1830A p.S610S . . . STK16 8576 broad.mit.edu 36 2 219819685 219819685 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008910 exon3 c.G149A p.R50Q . . . TUBA4A 7277 broad.mit.edu 36 2 219824614 219824614 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006000 exon3 c.G292A p.D98N . . . OBSL1 23363 broad.mit.edu 36 2 220140899 220140899 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001173431 exon3 c.T1319G p.V440G . . . SLC4A3 6508 broad.mit.edu 36 2 220206260 220206260 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005070 exon10 c.A1298G p.D433G . . . SLC4A3 6508 broad.mit.edu 36 2 220214646 220214646 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005070 exon23 c.C3651T p.F1217F . . . EPHA4 2043 broad.mit.edu 36 2 222029706 222029706 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004438 exon7 c.C1474T p.R492W . . . SGPP2 130367 broad.mit.edu 36 2 223094787 223094787 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152386 exon3 c.T436C p.S146P . . . SGPP2 130367 broad.mit.edu 36 2 223131676 223131676 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152386 exon5 c.C1015T p.R339C . . . FARSB 10056 broad.mit.edu 36 2 223215960 223215960 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005687 exon3 c.G123T p.E41D . . . SCG2 7857 broad.mit.edu 36 2 224171435 224171435 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003469 exon2 c.G810T p.E270D . . . SCG2 7857 broad.mit.edu 36 2 224171743 224171743 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003469 exon2 c.C502T p.P168S . . . SCG2 7857 broad.mit.edu 36 2 224171910 224171910 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003469 exon2 c.G335T p.R112I . . . WDFY1 57590 broad.mit.edu 36 2 224468584 224468584 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020830 exon7 c.C606T p.V202V . . . MRPL44 65080 broad.mit.edu 36 2 224532857 224532857 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022915 exon2 c.G542A p.S181N . . . DOCK10 55619 broad.mit.edu 36 2 225351240 225351240 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014689 exon51 c.T5661G p.F1887L . . . DOCK10 55619 broad.mit.edu 36 2 225378172 225378172 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014689 exon36 c.C4046T p.S1349L . . . DOCK10 55619 broad.mit.edu 36 2 225504626 225504626 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014689 exon2 c.G127T p.E43X . . . KIAA1486 57624 broad.mit.edu 36 2 226086362 226086362 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020864 exon3 c.G253T p.G85X . . . KIAA1486 57624 broad.mit.edu 36 2 226155238 226155238 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020864 exon4 c.C861T p.F287F . . . IRS1 3667 broad.mit.edu 36 2 227368023 227368023 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_005544 exon1 c.T3676G p.L1226V . . . IRS1 3667 broad.mit.edu 36 2 227369172 227369172 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005544 exon1 c.C2527T p.R843X . . . RHBDD1 84236 broad.mit.edu 36 2 227437943 227437943 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167608 exon4 c.G290T p.R97I . . . COL4A4 1286 broad.mit.edu 36 2 227616091 227616091 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000092 exon36 c.G3343T p.G1115X . . . COL4A4 1286 broad.mit.edu 36 2 227650985 227650985 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000092 exon25 c.G1856A p.G619D . . . COL4A3 1285 broad.mit.edu 36 2 227855340 227855340 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000091 exon32 c.C2504T p.T835M . . . MFF 56947 broad.mit.edu 36 2 227913306 227913306 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020194 exon6 c.C484T p.R162C . . . WDR69 164781 broad.mit.edu 36 2 228458340 228458340 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178821 exon2 c.G70T p.E24X . . . WDR69 164781 broad.mit.edu 36 2 228462878 228462878 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178821 exon3 c.G176A p.R59Q . . . WDR69 164781 broad.mit.edu 36 2 228466766 228466766 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178821 exon5 c.G329T p.G110V . . . SPHKAP 80309 broad.mit.edu 36 2 228554704 228554704 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142644 exon12 c.C5076A p.L1692L . . . SPHKAP 80309 broad.mit.edu 36 2 228589435 228589435 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142644 exon7 c.C4379T p.S1460L . . . SPHKAP 80309 broad.mit.edu 36 2 228590244 228590244 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142644 exon7 c.C3570A p.I1190I . . . SPHKAP 80309 broad.mit.edu 36 2 228591828 228591828 + Silent SNP G A A rs61752224 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142644 exon7 c.C1986T p.V662V . . . SPHKAP 80309 broad.mit.edu 36 2 228594738 228594738 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142644 exon6 c.C630T p.I210I . . . SPHKAP 80309 broad.mit.edu 36 2 228598368 228598368 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142644 exon5 c.T427G p.F143V . . . SPHKAP 80309 broad.mit.edu 36 2 228681893 228681893 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001142644 exon3 c.C145T p.R49C . . . DNER 92737 broad.mit.edu 36 2 229939948 229939948 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139072 exon12 c.C1987T p.R663C . . . DNER 92737 broad.mit.edu 36 2 230164585 230164585 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139072 exon2 c.G540A p.P180P . . . TRIP12 9320 broad.mit.edu 36 2 230380799 230380799 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004238 exon16 c.G2221T p.E741X . . . TRIP12 9320 broad.mit.edu 36 2 230388105 230388105 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004238 exon10 c.G1541A p.R514Q . . . SLC16A14 151473 broad.mit.edu 36 2 230618853 230618853 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152527 exon4 c.C1233A p.I411I . . . SLC16A14 151473 broad.mit.edu 36 2 230619146 230619146 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152527 exon4 c.C940T p.R314X . . . SP140 11262 broad.mit.edu 36 2 230810054 230810054 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007237 exon2 c.G72T p.E24D . . . SP140 11262 broad.mit.edu 36 2 230810165 230810165 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007237 exon2 c.T183C p.F61F . . . SP140 11262 broad.mit.edu 36 2 230821848 230821848 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007237 exon9 c.C897A p.T299T . . . SP140 11262 broad.mit.edu 36 2 230882939 230882939 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007237 exon23 c.C2115T p.C705C . . . SP140L 93349 broad.mit.edu 36 2 230901735 230901735 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_138402 exon2 c.T52G p.S18A . . . SP140L 93349 broad.mit.edu 36 2 230932058 230932058 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_138402 exon4 c.G406A p.D136N . . . CAB39 51719 broad.mit.edu 36 2 231363884 231363884 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130850 exon3 c.C168T p.G56G . . . PSMD1 5707 broad.mit.edu 36 2 231635477 231635477 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002807 exon4 c.G148A p.E50K . . . PSMD1 5707 broad.mit.edu 36 2 231643052 231643052 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002807 exon6 c.C580T p.R194W . . . PSMD1 5707 broad.mit.edu 36 2 231653122 231653122 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002807 exon12 c.G1263T p.Q421H . . . ARMC9 80210 broad.mit.edu 36 2 231779208 231779208 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025139 exon2 c.C13A p.L5M . . . ARMC9 80210 broad.mit.edu 36 2 231799736 231799736 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025139 exon7 c.G603T p.E201D . . . B3GNT7 93010 broad.mit.edu 36 2 231971071 231971071 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145236 exon2 c.G397A p.D133N . . . B3GNT7 93010 broad.mit.edu 36 2 231971492 231971492 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_145236 exon2 c.G818T p.R273L . . . NCL 4691 broad.mit.edu 36 2 232032008 232032008 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005381 exon7 c.C1113A p.V371V . . . DIS3L2 129563 broad.mit.edu 36 2 232602973 232602973 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152383 exon5 c.G305A p.R102H . . . DIS3L2 129563 broad.mit.edu 36 2 232660455 232660455 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152383 exon6 c.G381T p.E127D . . . DIS3L2 129563 broad.mit.edu 36 2 232709642 232709642 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152383 exon8 c.G919T p.D307Y . . . ALPPL2 251 broad.mit.edu 36 2 232980117 232980117 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031313 exon2 c.C174A p.F58L . . . ECEL1 9427 broad.mit.edu 36 2 233057476 233057476 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004826 exon6 c.G1134A p.A378A . . . CHRNG 1146 broad.mit.edu 36 2 233117430 233117430 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005199 exon10 c.C1145T p.S382L . . . EIF4E2 9470 broad.mit.edu 36 2 233137273 233137273 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004846 exon4 c.C343A p.L115I . . . GIGYF2 26058 broad.mit.edu 36 2 233333472 233333472 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001103148 exon6 c.T418G p.F140V . . . KCNJ13 3769 broad.mit.edu 36 2 233341731 233341731 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002242 exon3 c.G497A p.R166Q . . . GIGYF2 26058 broad.mit.edu 36 2 233405859 233405859 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001103148 exon21 c.C2560T p.R854X . . . DGKD 8527 broad.mit.edu 36 2 234033232 234033232 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152879 exon23 c.C2785T p.R929W . . . UGT1A9 54600 broad.mit.edu 36 2 234245984 234245984 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021027 exon1 c.G665A p.R222H . . . UGT1A6 54578 broad.mit.edu 36 2 234267246 234267246 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001072 exon1 c.C857T p.S286F . . . UGT1A3 54659 broad.mit.edu 36 2 234302970 234302970 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019093 exon1 c.C459T p.P153P . . . HJURP 55355 broad.mit.edu 36 2 234414381 234414381 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018410 exon8 c.C1784A p.S595Y . . . HJURP 55355 broad.mit.edu 36 2 234415087 234415087 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018410 exon8 c.C1078A p.L360I . . . TRPM8 79054 broad.mit.edu 36 2 234510845 234510845 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024080 exon4 c.G301A p.D101N . . . TRPM8 79054 broad.mit.edu 36 2 234512521 234512521 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024080 exon5 c.G489T p.K163N . . . TRPM8 79054 broad.mit.edu 36 2 234523394 234523394 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024080 exon9 c.C1005T p.I335I . . . TRPM8 79054 broad.mit.edu 36 2 234556551 234556551 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024080 exon20 c.C2705T p.S902L . . . TRPM8 79054 broad.mit.edu 36 2 234581464 234581464 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024080 exon24 c.G3242A p.R1081Q . . . SPP2 6694 broad.mit.edu 36 2 234624431 234624431 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006944 exon2 c.T163C p.S55P . . . AGAP1 116987 broad.mit.edu 36 2 236372834 236372834 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037131 exon8 c.G886A p.D296N . . . ASB18 401036 broad.mit.edu 36 2 236814769 236814769 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_212556 exon2 c.T221C p.L74P . . . IQCA1 79781 broad.mit.edu 36 2 236937191 236937191 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024726 exon15 c.C1840T p.L614F . . . IQCA1 79781 broad.mit.edu 36 2 237067251 237067251 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024726 exon3 c.A355G p.I119V . . . CXCR7 57007 broad.mit.edu 36 2 237154187 237154187 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020311 exon2 c.G340A p.E114K . . . CXCR7 57007 broad.mit.edu 36 2 237154329 237154329 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020311 exon2 c.G482A p.R161H . . . COL6A3 1293 broad.mit.edu 36 2 237908224 237908224 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057166 exon38 c.G7192A p.A2398T . . . COL6A3 1293 broad.mit.edu 36 2 237909656 237909656 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_057166 exon37 c.G7005A p.A2335A . . . COL6A3 1293 broad.mit.edu 36 2 237909842 237909842 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057166 exon37 c.G6819A p.T2273T . . . COL6A3 1293 broad.mit.edu 36 2 237913924 237913924 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057166 exon35 c.G6553A p.D2185N . . . COL6A3 1293 broad.mit.edu 36 2 237914443 237914443 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057166 exon35 c.G6034A p.D2012N . . . COL6A3 1293 broad.mit.edu 36 2 237939381 237939381 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057166 exon9 c.C3716A p.S1239Y . . . COL6A3 1293 broad.mit.edu 36 2 237950717 237950717 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_057166 exon4 c.G686A p.R229Q . . . COL6A3 1293 broad.mit.edu 36 2 237954402 237954402 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057166 exon3 c.G571A p.D191N . . . COL6A3 1293 broad.mit.edu 36 2 237961411 237961411 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057167 exon3 c.G247T p.E83X . . . COL6A3 1293 broad.mit.edu 36 2 237961489 237961489 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_057167 exon3 c.G169A p.D57N . . . ATAD2B 54454 broad.mit.edu 36 2 23831101 23831101 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_017552 exon26 c.A4126C p.K1376Q . . . LRRFIP1 9208 broad.mit.edu 36 2 238336019 238336019 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001137552 exon11 c.C924T p.I308I . . . RBM44 375316 broad.mit.edu 36 2 238391168 238391168 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080504 exon3 c.G870T p.M290I . . . RBM44 375316 broad.mit.edu 36 2 238391776 238391776 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080504 exon3 c.C1478A p.S493Y . . . SCLY 51540 broad.mit.edu 36 2 238655577 238655577 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016510 exon6 c.C765T p.I255I . . . ILKAP 80895 broad.mit.edu 36 2 238744048 238744048 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030768 exon12 c.G1047T p.K349N . . . ILKAP 80895 broad.mit.edu 36 2 238758662 238758662 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030768 exon6 c.G431A p.R144Q . . . ILKAP 80895 broad.mit.edu 36 2 238761539 238761539 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030768 exon5 c.G397A p.E133K . . . ATAD2B 54454 broad.mit.edu 36 2 23899635 23899635 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017552 exon16 c.G2128T p.E710X . . . ATAD2B 54454 broad.mit.edu 36 2 23905309 23905309 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017552 exon15 c.G1733T p.R578I . . . ATAD2B 54454 broad.mit.edu 36 2 23957033 23957033 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017552 exon7 c.G881A p.R294Q . . . ATAD2B 54454 broad.mit.edu 36 2 23964254 23964254 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017552 exon4 c.G524T p.R175I . . . HDAC4 9759 broad.mit.edu 36 2 239726413 239726413 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006037 exon9 c.C882T p.S294S . . . OR6B3 150681 broad.mit.edu 36 2 240634104 240634104 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173351 exon1 c.C59T p.A20V . . . OTOS 150677 broad.mit.edu 36 2 240727327 240727327 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_148961 exon4 c.G203A p.R68Q . . . C2orf44 80304 broad.mit.edu 36 2 24114784 24114784 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025203 exon2 c.A1085C p.N362T . . . CAPN10 11132 broad.mit.edu 36 2 241177528 241177528 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_023085 exon2 c.C237T p.C79C . . . SF3B14 51639 broad.mit.edu 36 2 24144729 24144729 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016047 exon3 c.G254T p.R85I . . . SNED1 25992 broad.mit.edu 36 2 241637149 241637149 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080437 exon11 c.C1542T p.C514C . . . SNED1 25992 broad.mit.edu 36 2 241675542 241675542 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080437 exon30 c.G4184A p.S1395N . . . MTERFD2 130916 broad.mit.edu 36 2 241687824 241687824 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182501 exon2 c.C180T p.S60S . . . PASK 23178 broad.mit.edu 36 2 241703236 241703236 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015148 exon14 c.C3228A p.F1076L . . . PPP1R7 5510 broad.mit.edu 36 2 241741628 241741628 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002712 exon2 c.C117T p.I39I . . . PPP1R7 5510 broad.mit.edu 36 2 241748456 241748456 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002712 exon6 c.C471T p.I157I . . . PPP1R7 5510 broad.mit.edu 36 2 241751416 241751416 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002712 exon7 c.T641G p.F214C . . . PPP1R7 5510 broad.mit.edu 36 2 241770887 241770887 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002712 exon10 c.C1059T p.I353I . . . ANO7 50636 broad.mit.edu 36 2 241789440 241789440 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001001891 exon7 c.A771C p.Q257H . . . ANO7 50636 broad.mit.edu 36 2 241811326 241811326 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001891 exon22 c.C2536A p.L846I . . . HDLBP 3069 broad.mit.edu 36 2 241818348 241818348 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005336 exon26 c.C3484T p.R1162C . . . FARP2 9855 broad.mit.edu 36 2 242056263 242056263 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014808 exon18 c.C1929T p.V643V . . . C2orf85 285093 broad.mit.edu 36 2 242463818 242463818 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173821 exon2 c.G1438A p.D480N . . . C2orf84 653140 broad.mit.edu 36 2 24266843 24266843 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001040710 exon6 c.G460A p.D154N . . . ITSN2 50618 broad.mit.edu 36 2 24352213 24352213 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019595 exon17 c.G1873T p.E625X . . . ITSN2 50618 broad.mit.edu 36 2 24375094 24375094 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019595 exon13 c.G1438T p.E480X . . . ITSN2 50618 broad.mit.edu 36 2 24380223 24380223 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019595 exon9 c.G806T p.R269I . . . NCOA1 8648 broad.mit.edu 36 2 24815820 24815820 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003743 exon16 c.C3217T p.R1073W . . . C2orf79 391356 broad.mit.edu 36 2 24869624 24869624 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001013663 exon1 c.C127T p.P43S . . . CENPO 79172 broad.mit.edu 36 2 24893031 24893031 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199803 exon5 c.G589T p.A197S . . . DNMT3A 1788 broad.mit.edu 36 2 25312172 25312172 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175629 exon22 c.G2505A p.T835T . . . DNMT3A 1788 broad.mit.edu 36 2 25315561 25315561 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175629 exon20 c.G2350T p.E784X . . . DTNB 1838 broad.mit.edu 36 2 25715443 25715443 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_183360 exon3 c.G92A p.R31Q . . . ASXL2 55252 broad.mit.edu 36 2 25819045 25819045 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018263 exon12 c.C3665T p.T1222I . . . HADHA 3030 broad.mit.edu 36 2 26286235 26286235 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000182 exon11 c.G1003T p.E335X . . . EPT1 85465 broad.mit.edu 36 2 26461339 26461339 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033505 exon8 c.A740T p.K247I . . . OTOF 9381 broad.mit.edu 36 2 26537301 26537301 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194323 exon27 c.T3334C p.S1112P . . . KCNK3 3777 broad.mit.edu 36 2 26804430 26804430 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002246 exon2 c.C675T p.F225F . . . TMEM214 54867 broad.mit.edu 36 2 27114025 27114025 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001083590 exon8 c.C968A p.S323Y . . . C2orf28 51374 broad.mit.edu 36 2 27292968 27292968 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080592 exon6 c.C726A p.F242L . . . CAD 790 broad.mit.edu 36 2 27319252 27319252 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004341 exon42 c.C6387T p.F2129F . . . GTF3C2 2976 broad.mit.edu 36 2 27419384 27419384 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001035521 exon3 c.C382A p.L128I . . . SNX17 9784 broad.mit.edu 36 2 27450298 27450298 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014748 exon5 c.C388A p.L130M . . . C2orf16 84226 broad.mit.edu 36 2 27653272 27653272 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032266 exon1 c.G329A p.R110K . . . C2orf16 84226 broad.mit.edu 36 2 27653598 27653598 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032266 exon1 c.A655C p.K219Q . . . C2orf16 84226 broad.mit.edu 36 2 27654062 27654062 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032266 exon1 c.G1119T p.E373D . . . C2orf16 84226 broad.mit.edu 36 2 27654831 27654831 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032266 exon1 c.A1888C p.N630H . . . C2orf16 84226 broad.mit.edu 36 2 27655971 27655971 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032266 exon1 c.G3028A p.E1010K . . . C2orf16 84226 broad.mit.edu 36 2 27656836 27656836 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032266 exon1 c.G3893T p.R1298I . . . C2orf16 84226 broad.mit.edu 36 2 27658186 27658186 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032266 exon1 c.G5243T p.R1748I . . . ZNF512 84450 broad.mit.edu 36 2 27697532 27697532 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032434 exon14 c.C1404T p.F468F . . . SLC4A1AP 22950 broad.mit.edu 36 2 27740800 27740800 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018158 exon1 c.G677A p.S226N . . . BRE 9577 broad.mit.edu 36 2 28414868 28414868 + 3'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199194 exon13 c.C1136T p.A379V . . . FOSL2 2355 broad.mit.edu 36 2 28480623 28480623 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005253 exon2 c.G248T p.S83I . . . SPDYA 245711 broad.mit.edu 36 2 28892472 28892472 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182756 exon3 c.A88C p.K30Q . . . FAM179A 165186 broad.mit.edu 36 2 29079017 29079017 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199280 exon5 c.G539T p.S180I . . . C2orf71 388939 broad.mit.edu 36 2 29147493 29147493 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001029883 exon1 c.C3139T p.R1047X . . . C2orf71 388939 broad.mit.edu 36 2 29150030 29150030 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001029883 exon1 c.T602G p.I201S . . . C2orf71 388939 broad.mit.edu 36 2 29150375 29150375 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001029883 exon1 c.G257A p.R86K . . . ALK 238 broad.mit.edu 36 2 29269705 29269705 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004304 exon29 c.C4752T p.Y1584Y . . . ALK 238 broad.mit.edu 36 2 29397232 29397232 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004304 exon7 c.T1435G p.Y479D . . . ALK 238 broad.mit.edu 36 2 29460109 29460109 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004304 exon5 c.C1275T p.C425C . . . ALK 238 broad.mit.edu 36 2 29460183 29460183 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004304 exon5 c.C1201T p.R401X ALK,ovary,NS,Substitution - Nonsense,0 . . LCLAT1 253558 broad.mit.edu 36 2 30716884 30716884 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182551 exon7 c.C1140A p.I380I . . . CAPN13 92291 broad.mit.edu 36 2 30808866 30808866 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144575 exon20 c.C1869T p.V623V . . . EHD3 30845 broad.mit.edu 36 2 31337263 31337263 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014600 exon4 c.G886A p.D296N . . . SRD5A2 6716 broad.mit.edu 36 2 31607945 31607945 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000348 exon4 c.C633A p.S211S . . . MEMO1 51072 broad.mit.edu 36 2 31947028 31947028 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015955 exon9 c.G800A p.S267N . . . MEMO1 51072 broad.mit.edu 36 2 31948472 31948472 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015955 exon8 c.G711T p.K237N . . . SPAST 6683 broad.mit.edu 36 2 32232959 32232959 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199436 exon16 c.C1645T p.R549X . . . SLC30A6 55676 broad.mit.edu 36 2 32298810 32298810 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193513 exon15 c.C1030T p.R344X . . . NLRC4 58484 broad.mit.edu 36 2 32328377 32328377 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021209 exon4 c.C2060T p.A687V . . . NLRC4 58484 broad.mit.edu 36 2 32329212 32329212 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021209 exon4 c.G1225A p.E409K . . . BIRC6 57448 broad.mit.edu 36 2 32493868 32493868 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016252 exon10 c.G2005T p.E669X . . . BIRC6 57448 broad.mit.edu 36 2 32520934 32520934 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016252 exon19 c.G4145A p.R1382Q . . . BIRC6 57448 broad.mit.edu 36 2 32580315 32580315 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_016252 exon47 c.A9063C p.E3021D . . . BIRC6 57448 broad.mit.edu 36 2 32603533 32603533 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016252 exon58 c.G11698T p.E3900X . . . BIRC6 57448 broad.mit.edu 36 2 32624401 32624401 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_016252 exon63 c.A12780G p.R4260R . . . TTC27 55622 broad.mit.edu 36 2 32836993 32836993 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193509 exon13 c.G1433A p.R478H . . . TTC27 55622 broad.mit.edu 36 2 32891075 32891075 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193509 exon18 c.G2047A p.A683T . . . TTC27 55622 broad.mit.edu 36 2 32896085 32896085 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001193509 exon19 c.C2216A p.S739Y . . . LTBP1 4052 broad.mit.edu 36 2 33380101 33380101 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000627 exon18 c.G2389T p.E797X . . . RASGRP3 25780 broad.mit.edu 36 2 33598568 33598568 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_170672 exon6 c.G219T p.K73N . . . RASGRP3 25780 broad.mit.edu 36 2 33600559 33600559 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_170672 exon8 c.G402T p.Q134H . . . RASGRP3 25780 broad.mit.edu 36 2 33628316 33628316 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_170672 exon15 c.G1536A p.A512A . . . TTC15 51112 broad.mit.edu 36 2 3384582 3384582 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016030 exon3 c.C1075T p.R359C . . . CRIM1 51232 broad.mit.edu 36 2 36594294 36594294 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016441 exon11 c.T1872C p.D624D . . . CRIM1 51232 broad.mit.edu 36 2 36602887 36602887 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016441 exon13 c.C2355A p.F785L . . . CRIM1 51232 broad.mit.edu 36 2 36627785 36627785 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016441 exon16 c.A2901G p.I967M . . . FEZ2 9637 broad.mit.edu 36 2 36659294 36659294 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005102 exon5 c.A853C p.N285H . . . VIT 5212 broad.mit.edu 36 2 36823890 36823890 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177972 exon4 c.G262A p.A88T . . . VIT 5212 broad.mit.edu 36 2 36894845 36894845 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177969 exon15 c.C1874T p.A625V . . . VIT 5212 broad.mit.edu 36 2 36894907 36894907 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177969 exon15 c.G1936T p.D646Y . . . HEATR5B 54497 broad.mit.edu 36 2 37062235 37062235 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019024 exon36 c.C6118T p.R2040X . . . HEATR5B 54497 broad.mit.edu 36 2 37121926 37121926 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019024 exon19 c.C2710T p.R904X . . . ALLC 55821 broad.mit.edu 36 2 3721250 3721250 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018436 exon8 c.G580T p.E194X . . . SULT6B1 391365 broad.mit.edu 36 2 37260215 37260216 + Nonsense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_001032377 exon4 c.304_305TA . . . . CEBPZ 10153 broad.mit.edu 36 2 37301049 37301049 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005760 exon5 c.C2137A p.L713I . . . PRKD3 23683 broad.mit.edu 36 2 37371565 37371565 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005813 exon3 c.A509G p.Y170C . . . QPCT 25797 broad.mit.edu 36 2 37450417 37450417 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012413 exon5 c.G809T p.R270I . . . FAM82A1 151393 broad.mit.edu 36 2 38070224 38070224 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170793 exon5 c.G393T p.E131D . . . FAM82A1 151393 broad.mit.edu 36 2 38078124 38078124 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001170793 exon7 c.C572A p.S191Y . . . CYP1B1 1545 broad.mit.edu 36 2 38151581 38151581 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000104 exon3 c.G1420T p.E474X . . . SRSF7 6432 broad.mit.edu 36 2 38830298 38830298 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001031684 exon3 c.G263A p.R88K . . . DHX57 90957 broad.mit.edu 36 2 38879064 38879064 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198963 exon24 c.C4042T p.R1348C . . . DHX57 90957 broad.mit.edu 36 2 38887317 38887317 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198963 exon22 c.T3704G p.F1235C . . . DHX57 90957 broad.mit.edu 36 2 38941845 38941845 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198963 exon5 c.C1211T p.S404L . . . SOS1 6654 broad.mit.edu 36 2 39066774 39066774 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005633 exon23 c.C3697A p.L1233I . . . MAP4K3 8491 broad.mit.edu 36 2 39406181 39406181 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003618 exon12 c.C900T p.F300F . . . TMEM178 130733 broad.mit.edu 36 2 39784820 39784820 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152390 exon2 c.G496T p.D166Y . . . TMEM178 130733 broad.mit.edu 36 2 39797856 39797856 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152390 exon4 c.G855T p.K285N . . . THUMPD2 80745 broad.mit.edu 36 2 39850649 39850649 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025264 exon3 c.C377A p.S126Y . . . SLC8A1 6546 broad.mit.edu 36 2 40510016 40510016 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001112800 exon1 c.C909A p.F303L . . . MTA3 57504 broad.mit.edu 36 2 42784851 42784851 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020744 exon12 c.C1039T p.P347S . . . THADA 63892 broad.mit.edu 36 2 43652496 43652496 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001083953 exon13 c.G1918T p.D640Y . . . THADA 63892 broad.mit.edu 36 2 43657861 43657861 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001083953 exon10 c.G841A p.V281M . . . THADA 63892 broad.mit.edu 36 2 43671580 43671580 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001083953 exon4 c.G189T p.E63D . . . PLEKHH2 130271 broad.mit.edu 36 2 43773248 43773248 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172069 exon4 c.C278T p.S93L . . . ABCG5 64240 broad.mit.edu 36 2 43893828 43893828 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022436 exon13 c.A1887C p.S629S . . . LRPPRC 10128 broad.mit.edu 36 2 43969250 43969250 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133259 exon38 c.C4178A p.S1393Y . . . LRPPRC 10128 broad.mit.edu 36 2 44024496 44024496 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133259 exon23 c.C2338T p.L780F . . . PPM1B 5495 broad.mit.edu 36 2 44298629 44298629 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177969 exon3 c.C123T p.G41G . . . PREPL 9581 broad.mit.edu 36 2 44419131 44419131 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171613 exon7 c.T751G p.F251V . . . PREPL 9581 broad.mit.edu 36 2 44440157 44440157 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042385 exon1 c.C202T p.R68W . . . SIX2 10736 broad.mit.edu 36 2 45089348 45089348 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016932 exon1 c.C406T p.R136C . . . SRBD1 55133 broad.mit.edu 36 2 45628221 45628221 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018079 exon13 c.T1710G p.H570Q . . . SRBD1 55133 broad.mit.edu 36 2 45686062 45686062 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018079 exon2 c.C23T p.A8V . . . PRKCE 5581 broad.mit.edu 36 2 45732786 45732786 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005400 exon1 c.G43A p.A15T . . . PRKCE 5581 broad.mit.edu 36 2 46060949 46060949 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005400 exon5 c.C618T p.C206C . . . MSH2 4436 broad.mit.edu 36 2 47493060 47493060 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000251 exon4 c.A649C p.I217L . . . MSH2 4436 broad.mit.edu 36 2 47510443 47510443 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000251 exon7 c.G1135T p.D379Y . . . MSH2 4436 broad.mit.edu 36 2 47510525 47510525 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000251 exon7 c.G1217A p.R406Q MSH2,large_intestine,NS,Substitution - Nonsense,+1 . . MSH6 2956 broad.mit.edu 36 2 47880436 47880436 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000179 exon4 c.G1810T p.E604X . . . MSH6 2956 broad.mit.edu 36 2 47881494 47881494 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000179 exon4 c.G2868T p.E956D . . . FOXN2 3344 broad.mit.edu 36 2 48443291 48443291 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002158 exon5 c.C644A p.S215Y . . . KLRAQ1 129285 broad.mit.edu 36 2 48546146 48546146 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135629 exon9 c.G758A p.R253Q . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48662032 48662032 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198594 exon1 c.T756C p.C252C . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48672363 48672363 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198594 exon2 c.T1998C p.D666D . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48701584 48701584 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006872 exon2 c.G112T p.D38Y . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48727261 48727261 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006872 exon6 c.A554G p.E185G . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48750599 48750599 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006872 exon7 c.G1213T p.D405Y . . . FSHR 2492 broad.mit.edu 36 2 49044609 49044609 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181446 exon9 c.C777T p.I259I . . . NRXN1 9378 broad.mit.edu 36 2 50633362 50633362 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001135659 exon10 c.T1746C p.A582A . . . ASB3 51130 broad.mit.edu 36 2 53795214 53795214 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016115 exon7 c.A791C p.D264A . . . ERLEC1 27248 broad.mit.edu 36 2 53898597 53898597 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015701 exon14 c.C1439A p.S480Y . . . PSME4 23198 broad.mit.edu 36 2 53968022 53968022 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014614 exon40 c.G4607A p.R1536Q . . . PSME4 23198 broad.mit.edu 36 2 53974334 53974334 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014614 exon35 c.G4019A p.R1340Q . . . PSME4 23198 broad.mit.edu 36 2 53980575 53980575 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014614 exon29 c.A3369C p.E1123D . . . PSME4 23198 broad.mit.edu 36 2 53984708 53984708 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014614 exon27 c.C3033A p.F1011L . . . PSME4 23198 broad.mit.edu 36 2 53989004 53989004 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014614 exon24 c.G2741A p.R914Q . . . SPTBN1 6711 broad.mit.edu 36 2 54726847 54726847 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003128 exon23 c.G4597T p.E1533X . . . RTN4 57142 broad.mit.edu 36 2 55106261 55106261 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020532 exon3 c.G2478T p.E826D . . . RTN4 57142 broad.mit.edu 36 2 55106339 55106339 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020532 exon3 c.G2400T p.L800F . . . RTN4 57142 broad.mit.edu 36 2 55108005 55108005 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020532 exon3 c.C734A p.S245Y . . . C2orf63 130162 broad.mit.edu 36 2 55298470 55298470 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_152385 exon4 c.A346G p.T116A . . . CCDC88A 55704 broad.mit.edu 36 2 55389826 55389826 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135597 exon24 c.T4145G p.F1382C . . . CCDC88A 55704 broad.mit.edu 36 2 55398277 55398277 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135597 exon20 c.C3526A p.L1176I . . . CCDC104 112942 broad.mit.edu 36 2 55609612 55609612 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080667 exon4 c.G377A p.R126Q . . . SMEK2 57223 broad.mit.edu 36 2 55697888 55697888 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122964 exon1 c.T38C p.L13P . . . PNPT1 87178 broad.mit.edu 36 2 55726003 55726003 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033109 exon22 c.A1807C p.N603H . . . PNPT1 87178 broad.mit.edu 36 2 55753696 55753696 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033109 exon9 c.G702T p.E234D . . . PNPT1 87178 broad.mit.edu 36 2 55760371 55760371 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033109 exon8 c.C629A p.S210Y . . . VRK2 7444 broad.mit.edu 36 2 58165550 58165550 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130483 exon4 c.G217T p.E73X . . . FANCL 55120 broad.mit.edu 36 2 58242170 58242170 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018062 exon12 c.C1011T p.C337C . . . BCL11A 53335 broad.mit.edu 36 2 60533233 60533233 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138559 exon5 c.C703T p.R235X . . . PAPOLG 64895 broad.mit.edu 36 2 60849524 60849524 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_022894 exon5 c.T433G p.L145V . . . PAPOLG 64895 broad.mit.edu 36 2 60877779 60877779 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022894 exon22 c.C2191T p.R731X . . . PUS10 150962 broad.mit.edu 36 2 61041084 61041084 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144709 exon11 c.C947A p.S316Y . . . PUS10 150962 broad.mit.edu 36 2 61043481 61043481 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144709 exon9 c.G772T p.E258X . . . PUS10 150962 broad.mit.edu 36 2 61089435 61089435 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144709 exon3 c.C346A p.L116I . . . PEX13 5194 broad.mit.edu 36 2 61129128 61129128 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002618 exon4 c.C931T p.R311C . . . USP34 9736 broad.mit.edu 36 2 61268783 61268783 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon80 c.C10599T p.V3533V . . . USP34 9736 broad.mit.edu 36 2 61295032 61295032 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon68 c.C8349T p.F2783F . . . USP34 9736 broad.mit.edu 36 2 61307715 61307715 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon62 c.G7586A p.R2529Q . . . USP34 9736 broad.mit.edu 36 2 61325850 61325850 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon51 c.C6626T p.T2209M . . . USP34 9736 broad.mit.edu 36 2 61359030 61359030 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon40 c.G5309A p.R1770Q . . . USP34 9736 broad.mit.edu 36 2 61392522 61392522 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon26 c.A3570C p.Q1190H . . . USP34 9736 broad.mit.edu 36 2 61399871 61399871 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon22 c.C3109T p.R1037X . . . USP34 9736 broad.mit.edu 36 2 61420111 61420111 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014709 exon18 c.C2623A p.L875I . . . XPO1 7514 broad.mit.edu 36 2 61574683 61574683 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003400 exon12 c.C1095A p.I365I . . . FAM161A 84140 broad.mit.edu 36 2 61916659 61916659 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032180 exon4 c.G1673T p.R558I . . . FAM161A 84140 broad.mit.edu 36 2 61920303 61920303 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032180 exon3 c.C1340T p.S447F . . . FAM161A 84140 broad.mit.edu 36 2 61920857 61920857 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032180 exon3 c.C786T p.I262I . . . EHBP1 23301 broad.mit.edu 36 2 62911731 62911731 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142614 exon6 c.G568A p.E190K . . . OTX1 5013 broad.mit.edu 36 2 63136533 63136533 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199770 exon5 c.G643A p.A215T . . . C2orf86 51057 broad.mit.edu 36 2 63255385 63255385 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015910 exon15 c.C2002T p.P668S . . . C2orf86 51057 broad.mit.edu 36 2 63485097 63485097 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015910 exon10 c.G1025A p.S342N . . . C2orf86 51057 broad.mit.edu 36 2 63518119 63518119 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015910 exon8 c.G573A p.K191K . . . UGP2 7360 broad.mit.edu 36 2 63964708 63964708 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001521 exon5 c.A519C p.K173N . . . UGP2 7360 broad.mit.edu 36 2 63966414 63966414 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001521 exon6 c.C730A p.L244M . . . VPS54 51542 broad.mit.edu 36 2 64029677 64029677 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016516 exon8 c.G1135T p.E379X . . . PELI1 57162 broad.mit.edu 36 2 64175778 64175778 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020651 exon7 c.G819A p.Q273Q . . . AFTPH 54812 broad.mit.edu 36 2 64632132 64632132 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017657 exon2 c.G20A p.R7Q . . . CEP68 23177 broad.mit.edu 36 2 65163236 65163236 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015147 exon6 c.C2167T p.R723C . . . CEP68 23177 broad.mit.edu 36 2 65163318 65163318 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015147 exon6 c.T2249C p.M750T . . . ACTR2 10097 broad.mit.edu 36 2 65320592 65320592 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001005386 exon2 c.G151T p.E51X . . . SPRED2 200734 broad.mit.edu 36 2 65394506 65394506 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181784 exon6 c.C890T p.S297L . . . SPRED2 200734 broad.mit.edu 36 2 65394754 65394754 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181784 exon6 c.C642T p.I214I . . . TMEM18 129787 broad.mit.edu 36 2 659830 659830 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152834 exon4 c.A254G p.Y85C . . . ETAA1 54465 broad.mit.edu 36 2 67484451 67484451 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019002 exon5 c.A1133T p.D378V . . . ETAA1 54465 broad.mit.edu 36 2 67485082 67485082 + Missense_Mutation SNP A C C rs61737411 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019002 exon5 c.A1764C p.E588D . . . ETAA1 54465 broad.mit.edu 36 2 67485235 67485235 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_019002 exon5 c.C1917A p.I639I . . . FBXO48 554251 broad.mit.edu 36 2 68545625 68545625 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024680 exon3 c.C157T p.R53W . . . APLF 200558 broad.mit.edu 36 2 68570887 68570887 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173545 exon2 c.G158A p.R53Q . . . APLF 200558 broad.mit.edu 36 2 68648015 68648015 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173545 exon9 c.C1325T p.T442M . . . PROKR1 10887 broad.mit.edu 36 2 68735945 68735945 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138964 exon2 c.C915T p.I305I . . . ARHGAP25 9938 broad.mit.edu 36 2 68894042 68894042 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166276 exon5 c.C773T p.A258V . . . ARHGAP25 9938 broad.mit.edu 36 2 68898588 68898588 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166276 exon7 c.C940A p.L314I . . . ARHGAP25 9938 broad.mit.edu 36 2 68903185 68903185 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166276 exon9 c.C1389T p.F463F . . . GKN1 56287 broad.mit.edu 36 2 69055302 69055302 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019617 exon1 c.C31T p.R11C . . . CMPK2 129607 broad.mit.edu 36 2 6918847 6918847 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207315 exon3 c.G911T p.R304I . . . GFPT1 2673 broad.mit.edu 36 2 69439941 69439941 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002056 exon5 c.G371A p.G124E . . . AAK1 22848 broad.mit.edu 36 2 69586298 69586298 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014911 exon16 c.G2176A p.E726K . . . AAK1 22848 broad.mit.edu 36 2 69623270 69623270 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014911 exon5 c.C423T p.R141R . . . GMCL1 64395 broad.mit.edu 36 2 69930364 69930364 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178439 exon8 c.C920A p.S307Y . . . MXD1 4084 broad.mit.edu 36 2 70016054 70016054 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002357 exon4 c.C271T p.R91X . . . PCBP1 5093 broad.mit.edu 36 2 70168426 70168426 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_006196 exon1 c.T47A p.I16N . . . TIA1 7072 broad.mit.edu 36 2 70296845 70296845 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022037 exon9 c.C730T p.R244W . . . RNF144A 9781 broad.mit.edu 36 2 7072345 7072345 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014746 exon5 c.T292A p.F98I . . . CD207 50489 broad.mit.edu 36 2 70913669 70913669 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015717 exon4 c.C587A p.S196Y . . . VAX2 25806 broad.mit.edu 36 2 71013470 71013470 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012476 exon3 c.G501A p.K167K . . . ANKRD53 79998 broad.mit.edu 36 2 71064837 71064837 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024933 exon6 c.C980A p.S327Y . . . MCEE 84693 broad.mit.edu 36 2 71205100 71205100 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032601 exon2 c.C122A p.S41Y . . . ZNF638 27332 broad.mit.edu 36 2 71503564 71503564 + Nonsense_Mutation SNP G T T rs4130106 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014497 exon22 c.G3412T p.E1138X . . . ZNF638 27332 broad.mit.edu 36 2 71504009 71504009 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014497 exon22 c.G3857A p.G1286E . . . ZNF638 27332 broad.mit.edu 36 2 71507562 71507562 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014497 exon24 c.A5055G p.E1685E . . . DYSF 8291 broad.mit.edu 36 2 71736814 71736814 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130982 exon43 c.G4620T p.Q1540H . . . DYSF 8291 broad.mit.edu 36 2 71750293 71750293 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130982 exon51 c.G5672A p.R1891H . . . EXOC6B 23233 broad.mit.edu 36 2 72595732 72595732 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015189 exon9 c.G947A p.R316Q . . . SFXN5 94097 broad.mit.edu 36 2 73068900 73068900 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144579 exon10 c.C620A p.A207D . . . SMYD5 10322 broad.mit.edu 36 2 73305525 73305525 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006062 exon11 c.G964T p.A322S . . . SMYD5 10322 broad.mit.edu 36 2 73306313 73306313 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006062 exon12 c.G1082A p.R361H . . . ALMS1 7840 broad.mit.edu 36 2 73532682 73532682 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015120 exon8 c.G5517A p.K1839K . . . ALMS1 7840 broad.mit.edu 36 2 73533701 73533701 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015120 exon8 c.G6536T p.G2179V . . . ALMS1 7840 broad.mit.edu 36 2 73570390 73570390 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015120 exon10 c.G7793T p.R2598I . . . ALMS1 7840 broad.mit.edu 36 2 73571928 73571928 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015120 exon10 c.G9331T p.E3111X . . . ALMS1 7840 broad.mit.edu 36 2 73682868 73682868 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015120 exon20 c.C12160T p.R4054W . . . DUSP11 8446 broad.mit.edu 36 2 73847229 73847229 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003584 exon8 c.G759T p.K253N . . . DUSP11 8446 broad.mit.edu 36 2 73849954 73849954 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003584 exon5 c.T581G p.L194R . . . DUSP11 8446 broad.mit.edu 36 2 73854493 73854493 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003584 exon4 c.G516T p.E172D . . . C2orf78 388960 broad.mit.edu 36 2 73896791 73896791 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080474 exon3 c.G1933A p.D645N . . . TET3 200424 broad.mit.edu 36 2 74181905 74181905 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144993 exon9 c.C4077T p.P1359P . . . BOLA3 388962 broad.mit.edu 36 2 74216281 74216281 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_212552 exon4 c.G271T p.E91X . . . MOBKL1B 55233 broad.mit.edu 36 2 74247732 74247732 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018221 exon3 c.C192A p.F64L . . . DCTN1 1639 broad.mit.edu 36 2 74442751 74442751 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023019 exon26 c.C3233A p.S1078Y . . . DCTN1 1639 broad.mit.edu 36 2 74448737 74448737 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_023019 exon12 c.G1482T p.E494D . . . RTKN 6242 broad.mit.edu 36 2 74509334 74509334 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001015056 exon8 c.T739C p.C247R . . . RTKN 6242 broad.mit.edu 36 2 74509486 74509486 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001015056 exon7 c.C697A p.H233N . . . RTKN 6242 broad.mit.edu 36 2 74520209 74520209 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033046 exon2 c.C49T p.R17W . . . WBP1 23559 broad.mit.edu 36 2 74540672 74540672 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012477 exon3 c.C337T p.L113L . . . MRPL53 116540 broad.mit.edu 36 2 74553236 74553236 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_053050 exon1 c.C60A p.F20L . . . TTC31 64427 broad.mit.edu 36 2 74571338 74571338 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022492 exon5 c.G510T p.M170I . . . AUP1 550 broad.mit.edu 36 2 74608634 74608634 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181575 exon7 c.C679T p.R227C . . . LOXL3 84695 broad.mit.edu 36 2 74614740 74614740 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032603 exon12 c.C2071A p.L691I . . . LOXL3 84695 broad.mit.edu 36 2 74633239 74633239 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032603 exon2 c.C31T p.P11S . . . DOK1 1796 broad.mit.edu 36 2 74636275 74636275 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001381 exon3 c.G426T p.E142D . . . SEMA4F 10505 broad.mit.edu 36 2 74754377 74754377 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004263 exon7 c.G736A p.E246K . . . C2orf3 6936 broad.mit.edu 36 2 75746603 75746603 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003203 exon16 c.T2188G p.L730V . . . LRRTM4 80059 broad.mit.edu 36 2 76829386 76829386 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001134745 exon4 c.C1716T p.I572I . . . LRRTM4 80059 broad.mit.edu 36 2 77600395 77600395 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024993 exon3 c.G108T p.K36N . . . REG1A 5967 broad.mit.edu 36 2 79202644 79202644 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002909 exon4 c.C206T p.S69L . . . LRRTM1 347730 broad.mit.edu 36 2 80383155 80383155 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178839 exon2 c.C1301T p.A434V . . . LRRTM1 347730 broad.mit.edu 36 2 80383652 80383652 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_178839 exon2 c.C804T p.I268I . . . SUCLG1 8802 broad.mit.edu 36 2 84512149 84512149 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003849 exon7 c.T819C p.H273H . . . SUCLG1 8802 broad.mit.edu 36 2 84512220 84512220 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003849 exon7 c.G748T p.E250X . . . DNAH6 1768 broad.mit.edu 36 2 84654204 84654204 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001370 exon12 c.C1906A p.L636I . . . TGOLN2 10618 broad.mit.edu 36 2 85407436 85407436 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006464 exon2 c.G930A p.E310E . . . ELMOD3 84173 broad.mit.edu 36 2 85470995 85470995 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032213 exon11 c.C1039A p.L347I . . . GGCX 2677 broad.mit.edu 36 2 85631675 85631675 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000821 exon13 c.C1772T p.T591M . . . GGCX 2677 broad.mit.edu 36 2 85633874 85633874 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000821 exon8 c.C1147A p.L383I . . . SFTPB 6439 broad.mit.edu 36 2 85746278 85746278 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198843 exon6 c.C580T p.P194S . . . ST3GAL5 8869 broad.mit.edu 36 2 85925141 85925141 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001042437 exon6 c.C828T p.I276I . . . POLR1A 25885 broad.mit.edu 36 2 86180652 86180652 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015425 exon2 c.C232A p.L78M . . . PTCD3 55037 broad.mit.edu 36 2 86215513 86215513 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017952 exon21 c.C1670A p.S557Y . . . IMMT 10989 broad.mit.edu 36 2 86225231 86225231 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100169 exon15 c.G1945T p.E649X . . . IMMT 10989 broad.mit.edu 36 2 86226717 86226717 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001100169 exon14 c.G1645A p.E549K . . . MRPL35 51318 broad.mit.edu 36 2 86287916 86287916 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016622 exon3 c.C333T p.I111I . . . KDM3A 55818 broad.mit.edu 36 2 86547430 86547430 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146688 exon10 c.G1432T p.A478S . . . RNF103 7844 broad.mit.edu 36 2 86685441 86685441 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198951 exon5 c.C1082A p.S361Y . . . KIDINS220 57498 broad.mit.edu 36 2 8789135 8789135 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020738 exon30 c.G4482T p.K1494N . . . KRCC1 51315 broad.mit.edu 36 2 88109183 88109183 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016618 exon4 c.G15T p.K5N . . . SMYD1 150572 broad.mit.edu 36 2 88168616 88168616 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198274 exon3 c.G435T p.K145N . . . SMYD1 150572 broad.mit.edu 36 2 88168703 88168703 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198274 exon3 c.C522T p.F174F . . . EIF2AK3 9451 broad.mit.edu 36 2 88694484 88694484 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004836 exon2 c.C311T p.S104L . . . RPIA 22934 broad.mit.edu 36 2 88780679 88780679 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_144563 exon3 c.T384C p.C128C . . . MBOAT2 129642 broad.mit.edu 36 2 8918334 8918334 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138799 exon12 c.C1197A p.N399K . . . MBOAT2 129642 broad.mit.edu 36 2 9016170 9016170 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138799 exon2 c.G128A p.R43Q . . . CPSF3 51692 broad.mit.edu 36 2 9510545 9510545 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016207 exon12 c.G1448T p.G483V . . . ADAM17 6868 broad.mit.edu 36 2 9583813 9583813 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003183 exon6 c.C631T p.R211X . . . ADRA2B 151 broad.mit.edu 36 2 96144866 96144866 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000682 exon1 c.G750A p.S250S . . . ASTL 431705 broad.mit.edu 36 2 96153345 96153345 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002036 exon9 c.A1267C p.N423H . . . ASTL 431705 broad.mit.edu 36 2 96159565 96159565 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002036 exon7 c.G684A p.T228T . . . ASTL 431705 broad.mit.edu 36 2 96162136 96162136 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001002036 exon6 c.G507A p.A169A . . . ASTL 431705 broad.mit.edu 36 2 96162944 96162944 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002036 exon5 c.G402A p.R134R . . . SNRNP200 23020 broad.mit.edu 36 2 96307375 96307375 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014014 exon40 c.T5651G p.F1884C . . . SNRNP200 23020 broad.mit.edu 36 2 96326428 96326428 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014014 exon12 c.G1485A p.T495T . . . ITPRIPL1 150771 broad.mit.edu 36 2 96356286 96356286 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001163523 exon2 c.C166T p.R56X . . . KIAA1310 55683 broad.mit.edu 36 2 96639008 96639008 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001115016 exon12 c.G1338T p.K446N . . . ANKRD36B 57730 broad.mit.edu 36 2 97534358 97534358 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_025190 exon17 c.C1291A p.P431T . . . VWA3B 200403 broad.mit.edu 36 2 98098631 98098631 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144992 exon3 c.G281T p.R94I . . . VWA3B 200403 broad.mit.edu 36 2 98200779 98200779 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144992 exon14 c.G1875T p.Q625H . . . VWA3B 200403 broad.mit.edu 36 2 98213076 98213076 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_144992 exon16 c.T2282C p.V761A . . . VWA3B 200403 broad.mit.edu 36 2 98219483 98219483 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144992 exon19 c.C2531A p.S844Y . . . CNGA3 1261 broad.mit.edu 36 2 98352949 98352949 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001298 exon2 c.C79T p.R27C . . . INPP4A 3631 broad.mit.edu 36 2 98535846 98535846 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001134225 exon14 c.C1329T p.L443L . . . INPP4A 3631 broad.mit.edu 36 2 98570414 98570414 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001134225 exon25 c.C2830T p.R944C . . . C2orf15 150590 broad.mit.edu 36 2 99133588 99133588 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144706 exon4 c.G237T p.K79N . . . LIPT1 51601 broad.mit.edu 36 2 99145229 99145229 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145197 exon4 c.G377T p.R126I . . . LIPT1 51601 broad.mit.edu 36 2 99145947 99145947 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145197 exon4 c.C1095T p.L365L . . . EIF5B 9669 broad.mit.edu 36 2 99372726 99372726 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015904 exon15 c.T2385C p.I795I . . . REV1 51455 broad.mit.edu 36 2 99389379 99389379 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016316 exon16 c.G2454T p.G818G . . . REV1 51455 broad.mit.edu 36 2 99393635 99393635 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016316 exon14 c.G2299T p.E767X . . . REV1 51455 broad.mit.edu 36 2 99404441 99404441 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016316 exon11 c.C1783T p.R595C . . . AFF3 3899 broad.mit.edu 36 2 99709979 99709979 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025108 exon10 c.G1158A p.S386S . . . AFF3 3899 broad.mit.edu 36 2 99989640 99989640 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001025108 exon6 c.G834A p.S278S . . . SUSD1 64420 broad.mit.edu 36 9 113951380 113951382 + In_Frame_Del DEL TTG - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_022486 exon3 c.336_338del p.112_113del . . . JAK2 3717 broad.mit.edu 36 9 5079745 5079745 + Frame_Shift_Del DEL A - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_004972 exon20 c.2643delA p.V881fs . . . GOLM1 51280 broad.mit.edu 36 9 87838104 87838106 + In_Frame_Del DEL CTC - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_177937 exon9 c.1040_1042del p.347_348del . . . TBC1D2 55357 broad.mit.edu 36 9 100001636 100001636 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018421 exon13 c.C2602T p.R868W . . . TBC1D2 55357 broad.mit.edu 36 9 100005506 100005506 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018421 exon10 c.C2156T p.A719V . . . TBC1D2 55357 broad.mit.edu 36 9 100046164 100046164 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018421 exon3 c.G580A p.A194T . . . GABBR2 9568 broad.mit.edu 36 9 100095897 100095897 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005458 exon18 c.C2651A p.S884Y . . . GABBR2 9568 broad.mit.edu 36 9 100108443 100108443 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005458 exon15 c.C2010T p.F670F . . . GABBR2 9568 broad.mit.edu 36 9 100187799 100187799 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005458 exon11 c.C1606A p.L536I . . . ANKS6 203286 broad.mit.edu 36 9 100538687 100538687 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_173551 exon15 c.T2551G p.F851V . . . ANKS6 203286 broad.mit.edu 36 9 100576179 100576179 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_173551 exon9 c.G1622A p.R541Q . . . GALNT12 79695 broad.mit.edu 36 9 100648192 100648192 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024642 exon9 c.C1571A p.T524N . . . COL15A1 1306 broad.mit.edu 36 9 100787966 100787966 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001855 exon3 c.G399A p.R133R . . . COL15A1 1306 broad.mit.edu 36 9 100799075 100799075 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001855 exon6 c.A843G p.P281P . . . COL15A1 1306 broad.mit.edu 36 9 100842630 100842630 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001855 exon23 c.G2482A p.D828N . . . COL15A1 1306 broad.mit.edu 36 9 100844207 100844207 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001855 exon24 c.A2571G p.E857E . . . COL15A1 1306 broad.mit.edu 36 9 100871782 100871782 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001855 exon42 c.G3960T p.Q1320H . . . COL15A1 1306 broad.mit.edu 36 9 100871957 100871957 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001855 exon42 c.G4135A p.E1379K . . . NR4A3 8013 broad.mit.edu 36 9 101634883 101634883 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173199 exon4 c.G1043A p.R348Q . . . NR4A3 8013 broad.mit.edu 36 9 101635483 101635483 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173199 exon5 c.C1180A p.P394T . . . STX17 55014 broad.mit.edu 36 9 101770627 101770627 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017919 exon8 c.A760G p.K254E . . . ERP44 23071 broad.mit.edu 36 9 101900899 101900899 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015051 exon1 c.C45A p.S15S . . . TEX10 54881 broad.mit.edu 36 9 102151373 102151373 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017746 exon2 c.A94C p.N32H . . . TMEFF1 8577 broad.mit.edu 36 9 102311191 102311191 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003692 exon3 c.G390T p.K130N . . . TMEFF1 8577 broad.mit.edu 36 9 102374661 102374661 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003692 exon9 c.G940T p.D314Y . . . MURC 347273 broad.mit.edu 36 9 102387955 102387955 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018116 exon2 c.G496A p.D166N . . . ZNF189 7743 broad.mit.edu 36 9 103211456 103211456 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_197977 exon4 c.C1459T p.R487X . . . RNF20 56254 broad.mit.edu 36 9 103363326 103363326 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019592 exon18 c.G2642A p.R881Q . . . GRIN3A 116443 broad.mit.edu 36 9 103381437 103381437 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133445 exon7 c.C2793A p.F931L . . . GRIN3A 116443 broad.mit.edu 36 9 103472365 103472365 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133445 exon3 c.C2150A p.S717Y . . . DMRT2 10655 broad.mit.edu 36 9 1046474 1046474 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181872 exon4 c.G887T p.S296I . . . SMC2 10592 broad.mit.edu 36 9 105922208 105922208 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006444 exon16 c.G2076T p.E692D . . . SMC2 10592 broad.mit.edu 36 9 105925307 105925307 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006444 exon17 c.G2230T p.E744X . . . SMC2 10592 broad.mit.edu 36 9 105940241 105940241 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006444 exon24 c.C3391T p.L1131L . . . OR13C4 138804 broad.mit.edu 36 9 106328894 106328894 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001919 exon1 c.G418A p.V140M . . . OR13C8 138802 broad.mit.edu 36 9 106371427 106371427 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004483 exon1 c.C158A p.S53Y . . . OR13C5 138799 broad.mit.edu 36 9 106400685 106400685 + Missense_Mutation SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G C G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004482 exon1 c.C831G p.D277E . . . OR13C2 392376 broad.mit.edu 36 9 106406792 106406792 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004481 exon1 c.G938T p.R313I . . . OR13C2 392376 broad.mit.edu 36 9 106407460 106407460 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004481 exon1 c.G270T p.K90N . . . OR13C2 392376 broad.mit.edu 36 9 106407665 106407665 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004481 exon1 c.G65T p.R22I . . . OR13C9 286362 broad.mit.edu 36 9 106419478 106419478 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001956 exon1 c.G829T p.D277Y . . . NIPSNAP3A 25934 broad.mit.edu 36 9 106556745 106556745 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015469 exon4 c.C523A p.L175I . . . NIPSNAP3A 25934 broad.mit.edu 36 9 106561366 106561366 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015469 exon6 c.C670T p.R224W . . . ABCA1 19 broad.mit.edu 36 9 106593128 106593128 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005502 exon44 c.C5823T p.C1941C . . . ABCA1 19 broad.mit.edu 36 9 106623490 106623490 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005502 exon20 c.G2947A p.V983M . . . ABCA1 19 broad.mit.edu 36 9 106624700 106624700 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005502 exon19 c.G2726A p.R909Q . . . ABCA1 19 broad.mit.edu 36 9 106705726 106705726 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005502 exon2 c.G56T p.R19I . . . SLC44A1 23446 broad.mit.edu 36 9 107111869 107111869 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080546 exon3 c.G170T p.R57I . . . FKTN 2218 broad.mit.edu 36 9 107403263 107403263 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079802 exon5 c.T182G p.F61C . . . TMEM38B 55151 broad.mit.edu 36 9 107550274 107550274 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018112 exon5 c.C642A p.I214I . . . ZNF462 58499 broad.mit.edu 36 9 108729121 108729121 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021224 exon3 c.C3107T p.S1036L . . . ZNF462 58499 broad.mit.edu 36 9 108730802 108730802 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021224 exon3 c.C4788T p.Y1596Y . . . ZNF462 58499 broad.mit.edu 36 9 108731175 108731175 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021224 exon3 c.G5161A p.D1721N . . . ZNF462 58499 broad.mit.edu 36 9 108786293 108786293 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021224 exon10 c.C6838T p.R2280C . . . ACTL7B 10880 broad.mit.edu 36 9 110657888 110657888 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006686 exon1 c.G144T p.K48N . . . CTNNAL1 8727 broad.mit.edu 36 9 110744877 110744877 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003798 exon19 c.A2198C p.K733T . . . CTNNAL1 8727 broad.mit.edu 36 9 110781564 110781564 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003798 exon7 c.C919T p.R307W . . . CTNNAL1 8727 broad.mit.edu 36 9 110801333 110801333 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003798 exon2 c.G166T p.D56Y . . . SVEP1 79987 broad.mit.edu 36 9 112210174 112210174 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153366 exon38 c.C7527A p.F2509L . . . SVEP1 79987 broad.mit.edu 36 9 112210312 112210312 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153366 exon38 c.C7389A p.L2463L . . . SVEP1 79987 broad.mit.edu 36 9 112210582 112210582 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153366 exon38 c.C7119T p.F2373F . . . SVEP1 79987 broad.mit.edu 36 9 112213831 112213831 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153366 exon37 c.C5981A p.T1994N . . . SVEP1 79987 broad.mit.edu 36 9 112237362 112237362 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153366 exon29 c.C4868A p.S1623Y . . . SVEP1 79987 broad.mit.edu 36 9 112252300 112252300 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153366 exon24 c.C3963A p.V1321V . . . MUSK 4593 broad.mit.edu 36 9 112578744 112578744 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005592 exon10 c.G1372T p.E458X . . . LPAR1 1902 broad.mit.edu 36 9 112677738 112677738 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001401 exon4 c.G879T p.E293D . . . LPAR1 1902 broad.mit.edu 36 9 112743882 112743882 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001401 exon3 c.G433A p.E145K . . . OR2K2 26248 broad.mit.edu 36 9 113129589 113129589 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_205859 exon1 c.C946T p.L316F . . . KIAA0368 23392 broad.mit.edu 36 9 113191745 113191745 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080398 exon32 c.G3893A p.R1298Q . . . ZNF483 158399 broad.mit.edu 36 9 113344148 113344148 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133464 exon6 c.C1112A p.S371Y . . . PTGR1 22949 broad.mit.edu 36 9 113372297 113372297 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146109 exon9 c.G774T p.E258D . . . DNAJC25 548645 broad.mit.edu 36 9 113451617 113451617 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001015882 exon3 c.C553T p.R185C . . . C9orf84 158401 broad.mit.edu 36 9 113493864 113493864 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173521 exon25 c.C4022T p.S1341F . . . C9orf84 158401 broad.mit.edu 36 9 113502055 113502055 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173521 exon22 c.G2991T p.K997N . . . UGCG 7357 broad.mit.edu 36 9 113731636 113731636 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003358 exon6 c.C594A p.I198I . . . SUSD1 64420 broad.mit.edu 36 9 113844058 113844058 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022486 exon16 c.C2153T p.S718L . . . SUSD1 64420 broad.mit.edu 36 9 113904372 113904372 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022486 exon9 c.G1186T p.E396X . . . C9orf80 58493 broad.mit.edu 36 9 114489670 114489670 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_021218 exon5 c.T284G p.L95R . . . C9orf80 58493 broad.mit.edu 36 9 114491714 114491714 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021218 exon4 c.G133A p.A45T . . . ZNF883 169834 broad.mit.edu 36 9 114799433 114799433 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001101338 exon5 c.C928T p.R310X . . . ZNF883 169834 broad.mit.edu 36 9 114800011 114800011 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001101338 exon5 c.G350T p.R117I . . . ZNF883 169834 broad.mit.edu 36 9 114800331 114800331 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001101338 exon5 c.G30A p.A10A . . . ZFP37 7539 broad.mit.edu 36 9 114845025 114845025 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003408 exon4 c.G1694T p.R565I . . . ZFP37 7539 broad.mit.edu 36 9 114845762 114845762 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003408 exon4 c.A957G p.K319K . . . ZFP37 7539 broad.mit.edu 36 9 114845975 114845975 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003408 exon4 c.A744G p.K248K . . . ZFP37 7539 broad.mit.edu 36 9 114858762 114858762 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003408 exon1 c.C28A p.L10M . . . SLC31A1 1317 broad.mit.edu 36 9 115060896 115060896 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001859 exon4 c.C304T p.R102C . . . C9orf43 257169 broad.mit.edu 36 9 115230317 115230317 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152786 exon12 c.C1100T p.S367L . . . RGS3 5998 broad.mit.edu 36 9 115397863 115397863 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144488 exon25 c.G3408T p.K1136N . . . ZNF618 114991 broad.mit.edu 36 9 115834815 115834815 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133374 exon11 c.C875T p.S292L . . . ZNF618 114991 broad.mit.edu 36 9 115851221 115851221 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133374 exon14 c.C1539T p.F513F . . . COL27A1 85301 broad.mit.edu 36 9 115996547 115996547 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032888 exon6 c.G2059A p.D687N . . . COL27A1 85301 broad.mit.edu 36 9 116052764 116052764 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032888 exon25 c.G3028T p.E1010X . . . COL27A1 85301 broad.mit.edu 36 9 116067183 116067183 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032888 exon31 c.G3311A p.R1104Q . . . ORM1 5004 broad.mit.edu 36 9 116126911 116126911 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000607 exon4 c.G349A p.A117T . . . AKNA 80709 broad.mit.edu 36 9 116178570 116178570 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030767 exon3 c.C1338T p.L446L . . . AKNA 80709 broad.mit.edu 36 9 116179061 116179061 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030767 exon3 c.G847T p.E283X . . . DFNB31 25861 broad.mit.edu 36 9 116228460 116228460 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015404 exon4 c.G1018A p.D340N . . . TNFSF8 944 broad.mit.edu 36 9 116706188 116706188 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001244 exon4 c.G549A p.T183T . . . TNC 3371 broad.mit.edu 36 9 116833684 116833684 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002160 exon23 c.G5889A p.R1963R . . . TNC 3371 broad.mit.edu 36 9 116886436 116886436 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002160 exon4 c.C2004T p.F668F . . . PAPPA 5069 broad.mit.edu 36 9 118029638 118029638 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002581 exon6 c.C2219A p.P740H . . . PAPPA 5069 broad.mit.edu 36 9 118133455 118133455 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002581 exon11 c.C3259T p.R1087W . . . ASTN2 23245 broad.mit.edu 36 9 118665766 118665766 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014010 exon10 c.C1804T p.R602C . . . ASTN2 23245 broad.mit.edu 36 9 118810204 118810204 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014010 exon6 c.G1426A p.D476N . . . ASTN2 23245 broad.mit.edu 36 9 119016667 119016667 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014010 exon3 c.G806A p.R269H . . . TLR4 7099 broad.mit.edu 36 9 119515569 119515569 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138554 exon3 c.A1342C p.N448H . . . TLR4 7099 broad.mit.edu 36 9 119516044 119516044 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138554 exon3 c.G1817A p.R606Q . . . TLR4 7099 broad.mit.edu 36 9 119516358 119516358 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138554 exon3 c.G2131T p.D711Y . . . DBC1 1620 broad.mit.edu 36 9 120970097 120970097 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014618 exon8 c.C1372T p.R458X . . . CDK5RAP2 55755 broad.mit.edu 36 9 122205106 122205106 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018249 exon34 c.G5106A p.S1702S . . . CDK5RAP2 55755 broad.mit.edu 36 9 122209269 122209269 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018249 exon32 c.G4805A p.R1602H . . . PSMD5 5711 broad.mit.edu 36 9 122628933 122628933 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005047 exon6 c.G745T p.V249L . . . TRAF1 7185 broad.mit.edu 36 9 122725817 122725817 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190945 exon4 c.G215A p.R72Q . . . C5 727 broad.mit.edu 36 9 122793364 122793364 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001735 exon23 c.G2867A p.R956Q . . . C5 727 broad.mit.edu 36 9 122832508 122832508 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001735 exon7 c.C746A p.T249N . . . CEP110 11064 broad.mit.edu 36 9 122959930 122959930 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007018 exon27 c.G4588T p.D1530Y . . . CEP110 11064 broad.mit.edu 36 9 122964244 122964244 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007018 exon32 c.G5297A p.R1766Q . . . CEP110 11064 broad.mit.edu 36 9 122970246 122970246 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007018 exon36 c.A5896G p.T1966A . . . STOM 2040 broad.mit.edu 36 9 123143495 123143495 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004099 exon7 c.G673A p.E225K . . . OR1J2 26740 broad.mit.edu 36 9 124312913 124312913 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_054107 exon1 c.G12T p.E4D . . . OR1J2 26740 broad.mit.edu 36 9 124313177 124313177 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_054107 exon1 c.C276A p.I92I . . . OR1N2 138882 broad.mit.edu 36 9 124356081 124356081 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004457 exon1 c.C812T p.S271F . . . OR1B1 347169 broad.mit.edu 36 9 124430915 124430915 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004450 exon1 c.C721T p.R241C . . . OR1L6 392390 broad.mit.edu 36 9 124552363 124552363 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004453 exon1 c.C416A p.P139Q . . . OR1L6 392390 broad.mit.edu 36 9 124552724 124552724 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001004453 exon1 c.C777T p.V259V . . . OR1K1 392392 broad.mit.edu 36 9 124602537 124602537 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080859 exon1 c.C315A p.F105L . . . OR1K1 392392 broad.mit.edu 36 9 124602870 124602870 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_080859 exon1 c.C648T p.L216L . . . RC3H2 54542 broad.mit.edu 36 9 124695010 124695010 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018835 exon3 c.A348C p.K116N . . . RC3H2 54542 broad.mit.edu 36 9 124699470 124699470 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018835 exon2 c.G140A p.R47Q . . . ZBTB6 10773 broad.mit.edu 36 9 124713931 124713931 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006626 exon2 c.G242A p.G81D . . . RABGAP1 23637 broad.mit.edu 36 9 124812562 124812562 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012197 exon11 c.C1483T p.R495C . . . GPR21 2844 broad.mit.edu 36 9 124836816 124836816 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005294 exon1 c.T150G p.I50M . . . GPR21 2844 broad.mit.edu 36 9 124837084 124837084 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005294 exon1 c.C418A p.L140M . . . STRBP 55342 broad.mit.edu 36 9 124938494 124938494 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171137 exon15 c.G1577A p.R526H . . . STRBP 55342 broad.mit.edu 36 9 124981144 124981144 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171137 exon4 c.G145T p.E49X . . . DENND1A 57706 broad.mit.edu 36 9 125259496 125259496 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024820 exon15 c.G1138T p.G380C . . . DENND1A 57706 broad.mit.edu 36 9 125259965 125259965 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024820 exon14 c.C1026T p.F342F . . . NR6A1 2649 broad.mit.edu 36 9 126342270 126342270 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033334 exon5 c.C459T p.I153I . . . SCAI 286205 broad.mit.edu 36 9 126797056 126797056 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173690 exon15 c.C1373T p.S458L . . . TYRP1 7306 broad.mit.edu 36 9 12694674 12694674 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000550 exon6 c.C1230A p.V410V . . . PPP6C 5537 broad.mit.edu 36 9 126955764 126955764 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001123369 exon5 c.G472A p.E158K . . . HSPA5 3309 broad.mit.edu 36 9 127041208 127041208 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005347 exon5 c.G829T p.D277Y . . . GAPVD1 26130 broad.mit.edu 36 9 127104495 127104495 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015635 exon3 c.T598C p.L200L . . . GAPVD1 26130 broad.mit.edu 36 9 127128671 127128671 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015635 exon10 c.C2014T p.R672C . . . GAPVD1 26130 broad.mit.edu 36 9 127137322 127137322 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015635 exon14 c.G2479T p.E827X . . . FAM125B 89853 broad.mit.edu 36 9 128197722 128197722 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001011703 exon6 c.G587T p.R196I . . . ZBTB43 23099 broad.mit.edu 36 9 128635707 128635707 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135776 exon2 c.C1098A p.F366L . . . ZBTB34 403341 broad.mit.edu 36 9 128682406 128682406 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001099270 exon2 c.T895G p.F299V . . . RALGPS1 9649 broad.mit.edu 36 9 128871362 128871362 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014636 exon8 c.G516T p.E172D . . . ZNF79 7633 broad.mit.edu 36 9 129246340 129246340 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007135 exon5 c.G540T p.K180N . . . SH2D3C 10044 broad.mit.edu 36 9 129549252 129549252 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142532 exon5 c.G197T p.S66I . . . ST6GALNAC4 27090 broad.mit.edu 36 9 129714373 129714373 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_175039 exon4 c.G606T p.K202N . . . CIZ1 25792 broad.mit.edu 36 9 129971601 129971601 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001131015 exon14 c.C1882T p.R628X . . . DNM1 1759 broad.mit.edu 36 9 130041580 130041580 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001005336 exon12 c.G1458T p.M486I . . . ODF2 4957 broad.mit.edu 36 9 130273518 130273518 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153439 exon5 c.G606A p.T202T . . . SPTAN1 6709 broad.mit.edu 36 9 130369011 130369011 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001195532 exon2 c.G171T p.E57D . . . SPTAN1 6709 broad.mit.edu 36 9 130414284 130414284 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195532 exon37 c.G4906T p.E1636X . . . SPTAN1 6709 broad.mit.edu 36 9 130419792 130419792 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195532 exon40 c.G5335A p.V1779M . . . NUP188 23511 broad.mit.edu 36 9 130807295 130807295 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015354 exon39 c.C4483T p.R1495X . . . MPDZ 8777 broad.mit.edu 36 9 13097075 13097075 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003829 exon45 c.C6015T p.G2005G . . . MPDZ 8777 broad.mit.edu 36 9 13116572 13116572 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003829 exon33 c.C4575T p.V1525V . . . ASB6 140459 broad.mit.edu 36 9 131440118 131440118 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017873 exon6 c.C1038T p.F346F . . . TOR1A 1861 broad.mit.edu 36 9 131620999 131620999 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000113 exon3 c.C466T p.R156X . . . USP20 10868 broad.mit.edu 36 9 131660177 131660177 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001008563 exon5 c.G163T p.E55X . . . USP20 10868 broad.mit.edu 36 9 131670123 131670123 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001008563 exon11 c.C709T p.R237C . . . FNBP1 23048 broad.mit.edu 36 9 131760615 131760615 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015033 exon5 c.G384T p.E128D . . . MPDZ 8777 broad.mit.edu 36 9 13176340 13176340 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003829 exon17 c.C2410A p.L804I . . . ASS1 445 broad.mit.edu 36 9 132344952 132344952 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000050 exon11 c.G717T p.K239N . . . PRDM12 59335 broad.mit.edu 36 9 132533459 132533459 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021619 exon3 c.G508A p.E170K . . . EXOSC2 23404 broad.mit.edu 36 9 132568300 132568300 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014285 exon8 c.C712T p.R238W . . . ABL1 25 broad.mit.edu 36 9 132719390 132719390 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005157 exon2 c.C198T p.F66F . . . LAMC3 10319 broad.mit.edu 36 9 132910856 132910856 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006059 exon8 c.G1507A p.D503N . . . LAMC3 10319 broad.mit.edu 36 9 132936805 132936805 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006059 exon18 c.C3183T p.D1061D . . . NUP214 8021 broad.mit.edu 36 9 133015583 133015583 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005085 exon15 c.G2092T p.D698Y . . . NUP214 8021 broad.mit.edu 36 9 133066857 133066857 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005085 exon30 c.T5524A p.F1842I . . . FAM78A 286336 broad.mit.edu 36 9 133126147 133126147 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033387 exon2 c.G735T p.K245N . . . BAT2L1 84726 broad.mit.edu 36 9 133311804 133311804 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013318 exon6 c.G809A p.G270E . . . BAT2L1 84726 broad.mit.edu 36 9 133340797 133340797 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013318 exon15 c.G3460A p.E1154K . . . BAT2L1 84726 broad.mit.edu 36 9 133343781 133343781 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013318 exon17 c.G4712A p.R1571H . . . UCK1 83549 broad.mit.edu 36 9 133394749 133394749 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031432 exon3 c.C312T p.I104I . . . RAPGEF1 2889 broad.mit.edu 36 9 133455123 133455123 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198679 exon16 c.C2334T p.F778F . . . RAPGEF1 2889 broad.mit.edu 36 9 133491192 133491192 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198679 exon10 c.C1643T p.A548V . . . RAPGEF1 2889 broad.mit.edu 36 9 133516072 133516072 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198679 exon2 c.G150T p.K50N . . . MED27 9442 broad.mit.edu 36 9 133944917 133944917 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004269 exon1 c.G136A p.E46K . . . SETX 23064 broad.mit.edu 36 9 134162217 134162217 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015046 exon14 c.G5827T p.E1943X . . . SETX 23064 broad.mit.edu 36 9 134193056 134193056 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015046 exon10 c.A3750C p.K1250N . . . SETX 23064 broad.mit.edu 36 9 134193852 134193852 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015046 exon10 c.C2954T p.S985L . . . TTF1 7270 broad.mit.edu 36 9 134261664 134261664 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007344 exon5 c.C1833T p.F611F . . . TTF1 7270 broad.mit.edu 36 9 134267477 134267477 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007344 exon2 c.G553A p.D185N . . . DDX31 64794 broad.mit.edu 36 9 134511144 134511144 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022779 exon13 c.C1654T p.R552X . . . GTF3C4 9329 broad.mit.edu 36 9 134543226 134543226 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012204 exon2 c.C399T p.F133F . . . GTF3C4 9329 broad.mit.edu 36 9 134548862 134548862 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012204 exon3 c.G2276A p.R759H . . . TSC1 7248 broad.mit.edu 36 9 134761754 134761754 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001162426 exon23 c.C3181T p.R1061W . . . GFI1B 8328 broad.mit.edu 36 9 134854274 134854274 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004188 exon5 c.C516A p.F172L . . . GFI1B 8328 broad.mit.edu 36 9 134856243 134856243 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001135031 exon6 c.G840T p.Q280H . . . GTF3C5 9328 broad.mit.edu 36 9 134916053 134916053 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122823 exon4 c.G635A p.R212H . . . SARDH 1757 broad.mit.edu 36 9 135572367 135572367 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_007101 exon8 c.A1052G p.D351G . . . VAV2 7410 broad.mit.edu 36 9 135623467 135623467 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134398 exon29 c.C2507T p.S836L . . . COL5A1 1289 broad.mit.edu 36 9 136763306 136763306 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000093 exon8 c.G1308A p.A436A . . . FCN2 2220 broad.mit.edu 36 9 136918117 136918117 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004108 exon7 c.G580T p.D194Y . . . FCN1 2219 broad.mit.edu 36 9 136944776 136944776 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002003 exon6 c.G375T p.G125G . . . FCN1 2219 broad.mit.edu 36 9 136946060 136946060 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002003 exon4 c.G299A p.G100E . . . OLFM1 10439 broad.mit.edu 36 9 137129958 137129958 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_014279 exon4 c.A408G p.I136M . . . OBP2A 29991 broad.mit.edu 36 9 137578546 137578546 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014582 exon2 c.C174T p.G58G . . . GLT6D1 360203 broad.mit.edu 36 9 137655874 137655874 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_182974 exon5 c.G721T p.D241Y . . . CAMSAP1 157922 broad.mit.edu 36 9 137843138 137843138 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015447 exon17 c.G4647T p.K1549N . . . CAMSAP1 157922 broad.mit.edu 36 9 137852972 137852972 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015447 exon11 c.G3356A p.R1119Q . . . UBAC1 10422 broad.mit.edu 36 9 137977988 137977988 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016172 exon5 c.G492T p.Q164H . . . LCN10 414332 broad.mit.edu 36 9 138755604 138755604 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001712 exon3 c.C288A p.I96I . . . LCN8 138307 broad.mit.edu 36 9 138770841 138770841 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178469 exon3 c.G180T p.K60N . . . CACNA1B 774 broad.mit.edu 36 9 139897077 139897077 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000718 exon3 c.G451A p.A151T . . . CACNA1B 774 broad.mit.edu 36 9 139931576 139931576 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000718 exon6 c.G838A p.D280N . . . NFIB 4781 broad.mit.edu 36 9 14297498 14297498 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001190738 exon2 c.G130A p.E44K . . . ZDHHC21 340481 broad.mit.edu 36 9 14609085 14609085 + Missense_Mutation SNP C T T rs61752940 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178566 exon10 c.G677A p.R226Q . . . ZDHHC21 340481 broad.mit.edu 36 9 14652297 14652297 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178566 exon6 c.A281C p.K94T . . . FREM1 158326 broad.mit.edu 36 9 14746379 14746379 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_144966 exon30 c.T5400C p.F1800F . . . FREM1 158326 broad.mit.edu 36 9 14749770 14749770 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144966 exon29 c.G5334T p.K1778N . . . FREM1 158326 broad.mit.edu 36 9 14791729 14791729 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144966 exon21 c.C3615A p.F1205L . . . FREM1 158326 broad.mit.edu 36 9 14806814 14806814 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144966 exon16 c.G2602A p.D868N . . . FREM1 158326 broad.mit.edu 36 9 14841562 14841562 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144966 exon7 c.C872T p.P291L . . . FREM1 158326 broad.mit.edu 36 9 14853874 14853874 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144966 exon4 c.G262A p.E88K . . . TTC39B 158219 broad.mit.edu 36 9 15178039 15178039 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168340 exon13 c.T1286C p.V429A . . . SNAPC3 6619 broad.mit.edu 36 9 15413915 15413915 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039697 exon2 c.A323C p.K108T . . . SNAPC3 6619 broad.mit.edu 36 9 15434628 15434628 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039697 exon4 c.A506C p.E169A . . . C9orf93 203238 broad.mit.edu 36 9 15714841 15714841 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173550 exon14 c.G1559A p.R520Q . . . C9orf93 203238 broad.mit.edu 36 9 15774546 15774546 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173550 exon21 c.G3121T p.E1041X . . . CNTLN 54875 broad.mit.edu 36 9 17133295 17133295 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017738 exon2 c.G370A p.E124K . . . CNTLN 54875 broad.mit.edu 36 9 17225695 17225695 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017738 exon4 c.A574C p.K192Q . . . CNTLN 54875 broad.mit.edu 36 9 17320716 17320716 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017738 exon9 c.G1428T p.K476N . . . CNTLN 54875 broad.mit.edu 36 9 17384581 17384581 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017738 exon15 c.A2129C p.K710T . . . FAM154A 158297 broad.mit.edu 36 9 18918824 18918824 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153707 exon4 c.G651T p.E217D . . . PLIN2 123 broad.mit.edu 36 9 19108436 19108436 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122 exon7 c.G795T p.K265N . . . DENND4C 55667 broad.mit.edu 36 9 19336864 19336864 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017925 exon18 c.G3242A p.R1081Q . . . SMARCA2 6595 broad.mit.edu 36 9 2022957 2022957 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139045 exon3 c.C231T p.I77I . . . MLLT3 4300 broad.mit.edu 36 9 20353483 20353483 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004529 exon7 c.G1322A p.R441Q . . . SMARCA2 6595 broad.mit.edu 36 9 2050894 2050894 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139045 exon9 c.G1600A p.D534N . . . SMARCA2 6595 broad.mit.edu 36 9 2076832 2076832 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139045 exon18 c.C2530T p.R844W . . . KIAA1797 54914 broad.mit.edu 36 9 20810345 20810345 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017794 exon15 c.G1583A p.R528Q . . . IFNA10 3446 broad.mit.edu 36 9 21197035 21197035 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002171 exon1 c.C62A p.S21Y . . . IFNA14 3448 broad.mit.edu 36 9 21229629 21229629 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002172 exon1 c.G306A p.E102E . . . KLHL9 55958 broad.mit.edu 36 9 21323736 21323736 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018847 exon1 c.C1123T p.R375W . . . IFNA2 3440 broad.mit.edu 36 9 21374886 21374886 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000605 exon1 c.G443T p.R148I . . . IFNE 338376 broad.mit.edu 36 9 21471453 21471453 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176891 exon1 c.C241A p.L81I . . . ELAVL2 1993 broad.mit.edu 36 9 23752156 23752156 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171197 exon2 c.C77T p.S26L . . . VLDLR 7436 broad.mit.edu 36 9 2638774 2638774 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018056 exon14 c.G2068T p.D690Y . . . KCNV2 169522 broad.mit.edu 36 9 2719545 2719545 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133497 exon2 c.G1456A p.G486R . . . IFNK 56832 broad.mit.edu 36 9 27514857 27514857 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020124 exon1 c.G523T p.E175X . . . LINGO2 158038 broad.mit.edu 36 9 27940633 27940633 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152570 exon7 c.C37A p.L13M . . . KIAA0020 9933 broad.mit.edu 36 9 2827247 2827247 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014878 exon3 c.G237T p.K79N . . . DDX58 23586 broad.mit.edu 36 9 32456353 32456353 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014314 exon16 c.G2272T p.E758X . . . DDX58 23586 broad.mit.edu 36 9 32483818 32483818 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014314 exon3 c.G364A p.D122N . . . TOPORS 10210 broad.mit.edu 36 9 32532594 32532594 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195622 exon2 c.A1734C p.K578N . . . TAF1L 138474 broad.mit.edu 36 9 32621214 32621214 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153809 exon1 c.A4364C p.K1455T . . . TAF1L 138474 broad.mit.edu 36 9 32622006 32622006 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153809 exon1 c.G3572A p.R1191Q . . . TAF1L 138474 broad.mit.edu 36 9 32624895 32624895 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153809 exon1 c.C683T p.T228I . . . TAF1L 138474 broad.mit.edu 36 9 32624963 32624963 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153809 exon1 c.C615A p.Y205X . . . DNAJA1 3301 broad.mit.edu 36 9 33016823 33016823 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001539 exon3 c.T145G p.S49A . . . CHMP5 51510 broad.mit.edu 36 9 33256076 33256076 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001195536 exon2 c.G138T p.K46N . . . NFX1 4799 broad.mit.edu 36 9 33284529 33284529 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147134 exon2 c.G137T p.R46I . . . NFX1 4799 broad.mit.edu 36 9 33285406 33285406 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_147134 exon2 c.G1014T p.K338N . . . AQP3 360 broad.mit.edu 36 9 33433768 33433768 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004925 exon2 c.C231A p.V77V . . . UBAP2 55833 broad.mit.edu 36 9 33912582 33912582 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018449 exon29 c.C3280T p.R1094C . . . UBAP2 55833 broad.mit.edu 36 9 33946100 33946100 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018449 exon11 c.G843T p.E281D . . . UBAP2 55833 broad.mit.edu 36 9 34007093 34007093 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018449 exon2 c.G54T p.Q18H . . . DCAF12 25853 broad.mit.edu 36 9 34115241 34115241 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015397 exon2 c.G113T p.R38I . . . KIF24 347240 broad.mit.edu 36 9 34280240 34280240 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_194313 exon5 c.C1059T p.L353L . . . C9orf25 203259 broad.mit.edu 36 9 34395953 34395953 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147202 exon2 c.G70A p.A24T . . . DNAI1 27019 broad.mit.edu 36 9 34480025 34480025 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012144 exon6 c.T404C p.V135A . . . CNTFR 1271 broad.mit.edu 36 9 34542808 34542808 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147164 exon8 c.C813T p.Y271Y . . . ARID3C 138715 broad.mit.edu 36 9 34612066 34612066 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017363 exon6 c.C1089T p.G363G . . . KIAA1045 23349 broad.mit.edu 36 9 34961626 34961626 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015297 exon2 c.C331A p.L111M . . . VCP 7415 broad.mit.edu 36 9 35056724 35056724 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007126 exon4 c.C393T p.F131F . . . FANCG 2189 broad.mit.edu 36 9 35064137 35064137 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004629 exon14 c.C1837T p.R613W . . . FANCG 2189 broad.mit.edu 36 9 35065282 35065282 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004629 exon11 c.G1474T p.E492X . . . PIGO 84720 broad.mit.edu 36 9 35083113 35083113 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032634 exon6 c.G1033A p.A345T . . . STOML2 30968 broad.mit.edu 36 9 35090048 35090048 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013442 exon10 c.G1055A p.R352Q . . . STOML2 30968 broad.mit.edu 36 9 35091799 35091799 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013442 exon5 c.G352A p.G118S . . . KIAA1539 80256 broad.mit.edu 36 9 35095274 35095274 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025182 exon9 c.G1561A p.E521K . . . UNC13B 10497 broad.mit.edu 36 9 35226517 35226517 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006377 exon4 c.A204G p.G68G . . . UNC13B 10497 broad.mit.edu 36 9 35285718 35285718 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006377 exon8 c.C552T p.V184V . . . UNC13B 10497 broad.mit.edu 36 9 35393824 35393824 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006377 exon39 c.C4570T p.R1524C . . . RUSC2 9853 broad.mit.edu 36 9 35550483 35550483 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014806 exon10 c.C3846T p.I1282I . . . CD72 971 broad.mit.edu 36 9 35606244 35606244 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001782 exon5 c.G384A p.T128T . . . TLN1 7094 broad.mit.edu 36 9 35707171 35707171 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006289 exon19 c.G2430T p.E810D . . . RGP1 9827 broad.mit.edu 36 9 35740881 35740881 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080496 exon5 c.C382T p.R128W . . . NPR2 4882 broad.mit.edu 36 9 35783932 35783932 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003995 exon2 c.G705T p.E235D . . . C9orf128 392307 broad.mit.edu 36 9 35815819 35815819 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001012446 exon2 c.G340T p.D114Y . . . OR2S2 56656 broad.mit.edu 36 9 35947487 35947487 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019897 exon1 c.G609A p.T203T . . . RECK 8434 broad.mit.edu 36 9 36090335 36090335 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021111 exon11 c.G1093T p.E365X . . . CLTA 1211 broad.mit.edu 36 9 36194074 36194074 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184760 exon4 c.C383A p.S128Y . . . MELK 9833 broad.mit.edu 36 9 36623110 36623110 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014791 exon10 c.G747T p.K249N . . . MELK 9833 broad.mit.edu 36 9 36655465 36655465 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014791 exon14 c.C1295T p.A432V . . . FRMPD1 22844 broad.mit.edu 36 9 37722310 37722310 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014907 exon10 c.G868A p.D290N . . . FRMPD1 22844 broad.mit.edu 36 9 37725605 37725605 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014907 exon13 c.C1275T p.S425S . . . FRMPD1 22844 broad.mit.edu 36 9 37730134 37730134 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014907 exon15 c.G1609A p.E537K . . . FRMPD1 22844 broad.mit.edu 36 9 37730686 37730686 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014907 exon15 c.G2161T p.D721Y . . . FRMPD1 22844 broad.mit.edu 36 9 37735265 37735265 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014907 exon16 c.G3236T p.R1079I . . . FRMPD1 22844 broad.mit.edu 36 9 37736027 37736027 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014907 exon16 c.A3998C p.Q1333P . . . ALDH1B1 219 broad.mit.edu 36 9 38386266 38386266 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000692 exon2 c.A521C p.E174A . . . GLIS3 169792 broad.mit.edu 36 9 3846069 3846069 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152629 exon8 c.C1948T p.L650L . . . CNTNAP3 79937 broad.mit.edu 36 9 39167400 39167400 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_033655 exon6 c.A842G p.D281G . . . DOCK8 81704 broad.mit.edu 36 9 396981 396981 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190458 exon26 c.G3142A p.D1048N . . . ZNF658 26149 broad.mit.edu 36 9 40762822 40762822 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033160 exon5 c.G2453T p.R818I . . . GLIS3 169792 broad.mit.edu 36 9 4108183 4108183 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152629 exon3 c.G830A p.R277H . . . DOCK8 81704 broad.mit.edu 36 9 429338 429338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001190458 exon38 c.G4873A p.E1625K . . . DOCK8 81704 broad.mit.edu 36 9 431899 431899 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001190458 exon40 c.T5080C p.Y1694H . . . PPAPDC2 403313 broad.mit.edu 36 9 4652720 4652720 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_203453 exon1 c.G345T p.K115N . . . JAK2 3717 broad.mit.edu 36 9 5054899 5054899 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004972 exon9 c.C1073A p.S358X . . . JAK2 3717 broad.mit.edu 36 9 5059145 5059145 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004972 exon11 c.G1450A p.E484K . . . RLN1 6013 broad.mit.edu 36 9 5325270 5325270 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006911 exon2 c.C539A p.S180Y . . . CD274 29126 broad.mit.edu 36 9 5456805 5456805 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014143 exon6 c.G826T p.D276Y . . . KIAA1432 57589 broad.mit.edu 36 9 5762740 5762740 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020829 exon23 c.C3556T p.R1186W . . . ERMP1 79956 broad.mit.edu 36 9 5802130 5802130 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024896 exon6 c.G1109T p.R370I . . . MLANA 2315 broad.mit.edu 36 9 5887569 5887569 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005511 exon3 c.C90T p.I30I . . . MLANA 2315 broad.mit.edu 36 9 5887631 5887631 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005511 exon3 c.G152A p.R51Q . . . KIAA2026 158358 broad.mit.edu 36 9 5910353 5910353 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001017969 exon8 c.T5643C p.S1881S . . . KIAA2026 158358 broad.mit.edu 36 9 5911062 5911062 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017969 exon8 c.C4934A p.S1645Y . . . KIAA2026 158358 broad.mit.edu 36 9 5912155 5912155 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017969 exon8 c.C3841T p.L1281F . . . KIAA2026 158358 broad.mit.edu 36 9 5912336 5912336 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017969 exon8 c.C3660A p.F1220L . . . RANBP6 26953 broad.mit.edu 36 9 6002674 6002674 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012416 exon1 c.G2934T p.E978D . . . RANBP6 26953 broad.mit.edu 36 9 6005324 6005324 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012416 exon1 c.G284T p.R95I . . . TPD52L3 89882 broad.mit.edu 36 9 6320998 6320998 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001874 exon2 c.G390A p.T130T . . . GLDC 2731 broad.mit.edu 36 9 6594606 6594606 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000170 exon7 c.G1040T p.R347I . . . ANKRD20A3 441425 broad.mit.edu 36 9 67528456 67528456 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001012419 exon6 c.G771T p.K257N . . . KDM4C 23081 broad.mit.edu 36 9 6870041 6870041 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146696 exon6 c.G725A p.R242Q . . . KDM4C 23081 broad.mit.edu 36 9 7003848 7003848 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146696 exon14 c.A2095G p.T699A . . . KANK1 23189 broad.mit.edu 36 9 701610 701610 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_153186 exon2 c.C370T p.R124X . . . PIP5K1B 8395 broad.mit.edu 36 9 70699138 70699138 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003558 exon8 c.G535T p.G179X . . . PRKACG 5568 broad.mit.edu 36 9 70818697 70818697 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002732 exon1 c.C132T p.F44F . . . APBA1 320 broad.mit.edu 36 9 71245843 71245843 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001163 exon11 c.G2190T p.K730N . . . APBA1 320 broad.mit.edu 36 9 71256956 71256956 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001163 exon9 c.G1870A p.E624K . . . APBA1 320 broad.mit.edu 36 9 71321182 71321182 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001163 exon2 c.C765T p.F255F . . . SMC5 23137 broad.mit.edu 36 9 72083358 72083358 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015110 exon5 c.C675T p.L225L . . . SMC5 23137 broad.mit.edu 36 9 72151884 72151884 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015110 exon20 c.G2651A p.G884E . . . TRPM3 80036 broad.mit.edu 36 9 72341800 72341800 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007471 exon25 c.C4013A p.S1338Y . . . TRPM3 80036 broad.mit.edu 36 9 72430014 72430014 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007471 exon13 c.C1686T p.I562I . . . TRPM3 80036 broad.mit.edu 36 9 72430227 72430227 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024971 exon13 c.C1200A p.I400I . . . TMEM2 23670 broad.mit.edu 36 9 73505547 73505547 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_013390 exon19 c.C3208T p.R1070X . . . TMEM2 23670 broad.mit.edu 36 9 73544836 73544836 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013390 exon5 c.G1167T p.Q389H . . . TMEM2 23670 broad.mit.edu 36 9 73550005 73550005 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013390 exon4 c.G783T p.K261N . . . TMEM2 23670 broad.mit.edu 36 9 73550210 73550210 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013390 exon4 c.A578C p.K193T . . . GDA 9615 broad.mit.edu 36 9 74032729 74032729 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004293 exon9 c.C873T p.F291F . . . ALDH1A1 216 broad.mit.edu 36 9 74714421 74714421 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000689 exon11 c.C1275A p.F425L . . . RORB 6096 broad.mit.edu 36 9 76447397 76447397 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006914 exon4 c.T483C p.G161G . . . TRPM6 140803 broad.mit.edu 36 9 76529473 76529473 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177310 exon39 c.G5930T p.R1977I . . . TRPM6 140803 broad.mit.edu 36 9 76587475 76587475 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177310 exon22 c.G3019T p.D1007Y . . . GCNT1 2650 broad.mit.edu 36 9 78307362 78307362 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001097635 exon3 c.T245G p.F82C . . . PRUNE2 158471 broad.mit.edu 36 9 78511091 78511091 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015225 exon8 c.C5919A p.A1973A . . . PRUNE2 158471 broad.mit.edu 36 9 78511832 78511832 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015225 exon8 c.C5178A p.F1726L . . . PRUNE2 158471 broad.mit.edu 36 9 78512012 78512012 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_015225 exon8 c.A4998G p.E1666E . . . VPS13A 23230 broad.mit.edu 36 9 79010714 79010714 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001018037 exon5 c.G284T p.R95I . . . VPS13A 23230 broad.mit.edu 36 9 79014219 79014219 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018037 exon6 c.A446C p.K149T . . . VPS13A 23230 broad.mit.edu 36 9 79024735 79024735 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018037 exon11 c.G800A p.R267Q . . . VPS13A 23230 broad.mit.edu 36 9 79086914 79086914 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018037 exon29 c.A3022C p.N1008H . . . VPS13A 23230 broad.mit.edu 36 9 79098223 79098223 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018037 exon31 c.G3369A p.T1123T . . . VPS13A 23230 broad.mit.edu 36 9 79208000 79208000 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001018037 exon68 c.A9101G p.Y3034C . . . GNA14 9630 broad.mit.edu 36 9 79333918 79333918 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004297 exon2 c.G196A p.E66K . . . GNAQ 2776 broad.mit.edu 36 9 79526220 79526220 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002072 exon7 c.G919T p.E307X . . . CEP78 84131 broad.mit.edu 36 9 80053033 80053033 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001098802 exon7 c.C899A p.S300Y . . . PSAT1 29968 broad.mit.edu 36 9 80106739 80106739 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058179 exon3 c.G171T p.E57D . . . TLE4 7091 broad.mit.edu 36 9 81526539 81526539 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007005 exon17 c.C1902A p.L634L . . . FAM75D1 389763 broad.mit.edu 36 9 83798455 83798455 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001670 exon4 c.G3250A p.D1084N . . . FAM75D1 389763 broad.mit.edu 36 9 83799475 83799475 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001001670 exon4 c.G4270T p.D1424Y . . . RASEF 158158 broad.mit.edu 36 9 84805759 84805759 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152573 exon10 c.G1309A p.D437N . . . PTPRD 5789 broad.mit.edu 36 9 8508036 8508036 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040712 exon9 c.G1346T p.R449I . . . FRMD3 257019 broad.mit.edu 36 9 85140262 85140262 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_174938 exon6 c.A585G p.K195K . . . FRMD3 257019 broad.mit.edu 36 9 85148002 85148002 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_174938 exon5 c.T395G p.I132S . . . KIF27 55582 broad.mit.edu 36 9 85642019 85642019 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017576 exon18 c.C3923A p.S1308Y . . . KIF27 55582 broad.mit.edu 36 9 85646996 85646996 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017576 exon17 c.C3697T p.R1233W . . . KIF27 55582 broad.mit.edu 36 9 85704518 85704518 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017576 exon5 c.G1480T p.V494L . . . RMI1 80010 broad.mit.edu 36 9 85806496 85806496 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024945 exon3 c.G775A p.A259T . . . RMI1 80010 broad.mit.edu 36 9 85806978 85806978 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024945 exon3 c.G1257T p.K419N . . . AGTPBP1 23287 broad.mit.edu 36 9 87351891 87351891 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015239 exon26 c.G3514T p.E1172X . . . AGTPBP1 23287 broad.mit.edu 36 9 87451094 87451094 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015239 exon12 c.G1027A p.E343K . . . AGTPBP1 23287 broad.mit.edu 36 9 87482182 87482182 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015239 exon6 c.T425A p.I142N . . . AGTPBP1 23287 broad.mit.edu 36 9 87497449 87497449 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015239 exon3 c.A132C p.K44N . . . NAA35 60560 broad.mit.edu 36 9 87747006 87747006 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024635 exon2 c.G112T p.E38X . . . NAA35 60560 broad.mit.edu 36 9 87783010 87783010 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024635 exon11 c.T771C p.A257A . . . GOLM1 51280 broad.mit.edu 36 9 87841099 87841099 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_177937 exon7 c.G741T p.K247N . . . ZCCHC6 79670 broad.mit.edu 36 9 88113275 88113275 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024617 exon22 c.C3727T p.R1243C . . . ZCCHC6 79670 broad.mit.edu 36 9 88150447 88150447 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024617 exon4 c.C776T p.A259V . . . C9orf170 401535 broad.mit.edu 36 9 88953573 88953573 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001709 exon1 c.C108T p.L36L . . . C9orf170 401535 broad.mit.edu 36 9 88961397 88961397 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001709 exon2 c.C258T p.S86S . . . DAPK1 1612 broad.mit.edu 36 9 89504934 89504934 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004938 exon24 c.C2833T p.R945X . . . CTSL1 1514 broad.mit.edu 36 9 89534460 89534460 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145918 exon6 c.C774A p.F258L . . . C9orf79 286234 broad.mit.edu 36 9 89690921 89690921 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178828 exon4 c.C1699A p.L567I . . . S1PR3 1903 broad.mit.edu 36 9 90806442 90806442 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005226 exon2 c.C507T p.G169G . . . S1PR3 1903 broad.mit.edu 36 9 90806784 90806784 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005226 exon2 c.C849A p.F283L . . . SEMA4D 10507 broad.mit.edu 36 9 91192299 91192299 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142287 exon14 c.G1152T p.L384F . . . DIRAS2 54769 broad.mit.edu 36 9 92415626 92415626 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017594 exon2 c.G304A p.E102K . . . SYK 6850 broad.mit.edu 36 9 92689990 92689990 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001174168 exon11 c.C1651T p.R551X . . . NFIL3 4783 broad.mit.edu 36 9 93211634 93211634 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005384 exon2 c.G1204T p.E402X . . . ROR2 4920 broad.mit.edu 36 9 93526583 93526583 + Missense_Mutation SNP C T T rs55651110 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004560 exon9 c.G2014A p.D672N . . . ROR2 4920 broad.mit.edu 36 9 93558180 93558180 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004560 exon4 c.A488C p.N163T . . . NOL8 55035 broad.mit.edu 36 9 94099983 94099983 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017948 exon17 c.C3460T p.R1154X . . . OGN 4969 broad.mit.edu 36 9 94192142 94192142 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014057 exon5 c.G445A p.D149N . . . OMD 4958 broad.mit.edu 36 9 94217515 94217515 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005014 exon3 c.C1006T p.R336C . . . ZNF484 83744 broad.mit.edu 36 9 94649538 94649538 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007101 exon4 c.A1244C p.K415T . . . ZNF484 83744 broad.mit.edu 36 9 94650603 94650603 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007101 exon4 c.C179A p.S60Y . . . FAM120A 23196 broad.mit.edu 36 9 95300927 95300927 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014612 exon5 c.G968T p.R323I . . . FAM120A 23196 broad.mit.edu 36 9 95331680 95331680 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014612 exon9 c.G1731A p.T577T . . . PTPDC1 138639 broad.mit.edu 36 9 95899502 95899502 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152422 exon6 c.G827A p.R276Q . . . PTPDC1 138639 broad.mit.edu 36 9 95899957 95899957 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152422 exon6 c.C1282T p.R428W . . . FAM22F 54754 broad.mit.edu 36 9 96121756 96121756 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017561 exon6 c.G1445T p.S482I . . . FBP2 8789 broad.mit.edu 36 9 96373659 96373659 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003837 exon4 c.G473A p.R158H . . . PTCH1 5727 broad.mit.edu 36 9 97278154 97278154 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001083605 exon12 c.C1258T p.R420W . . . C9orf102 375748 broad.mit.edu 36 9 97723299 97723299 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010895 exon7 c.G1213T p.D405Y . . . DMRT3 58524 broad.mit.edu 36 9 980838 980838 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021240 exon2 c.G1252A p.V418I . . . SLC35D2 11046 broad.mit.edu 36 9 98146084 98146084 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007001 exon8 c.G607A p.G203R . . . HABP4 22927 broad.mit.edu 36 9 98267513 98267513 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014282 exon3 c.G586T p.G196C . . . CDC14B 8555 broad.mit.edu 36 9 98325486 98325486 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077181 exon11 c.C1012T p.R338C . . . ZNF510 22869 broad.mit.edu 36 9 98561142 98561142 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014930 exon6 c.G1791T p.E597D . . . ZNF782 158431 broad.mit.edu 36 9 98621207 98621207 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001662 exon6 c.C919A p.H307N . . . ZNF782 158431 broad.mit.edu 36 9 98621386 98621386 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001662 exon6 c.A740C p.K247T . . . CTSL2 1515 broad.mit.edu 36 9 98837770 98837770 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001333 exon6 c.G648T p.E216D . . . ZNF322B 387328 broad.mit.edu 36 9 99001237 99001237 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199005 exon1 c.C378A p.F126L . . . LOC57653 57653 broad.mit.edu 36 9 99132440 99132440 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020893 exon18 c.C1976A p.P659H . . . LOC57653 57653 broad.mit.edu 36 9 99132856 99132856 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_020893 exon18 c.T2392G p.L798V . . . LOC57653 57653 broad.mit.edu 36 9 99177582 99177582 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020893 exon36 c.G4864A p.E1622K . . . TDRD7 23424 broad.mit.edu 36 9 99275617 99275617 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014290 exon11 c.T1967G p.V656G . . . TDRD7 23424 broad.mit.edu 36 9 99285430 99285430 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014290 exon15 c.T2891C p.V964A . . . TMOD1 7111 broad.mit.edu 36 9 99368054 99368054 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166116 exon7 c.C722T p.A241V . . . TSTD2 158427 broad.mit.edu 36 9 99413799 99413799 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139246 exon5 c.C607T p.R203X . . . NCBP1 4686 broad.mit.edu 36 9 99471013 99471013 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002486 exon21 c.G2081A p.R694Q . . . C9orf156 51531 broad.mit.edu 36 9 99712283 99712283 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016481 exon4 c.G846T p.E282D . . . C9orf156 51531 broad.mit.edu 36 9 99712606 99712606 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016481 exon4 c.G523T p.D175Y . . . HEMGN 55363 broad.mit.edu 36 9 99729519 99729519 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_197978 exon4 c.G1423T p.E475X . . . HEMGN 55363 broad.mit.edu 36 9 99733280 99733280 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_197978 exon3 c.G218A p.R73Q . . . NANS 54187 broad.mit.edu 36 9 99885144 99885144 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018946 exon6 c.A1066C p.K356Q . . . CORO2A 7464 broad.mit.edu 36 9 99930779 99930779 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003389 exon9 c.C1011A p.I337I . . . NALCN 259232 broad.mit.edu 36 13 100558102 100558102 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052867 exon21 c.G2404T p.D802Y . . . NALCN 259232 broad.mit.edu 36 13 100827340 100827340 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052867 exon5 c.G444T p.L148L . . . ITGBL1 9358 broad.mit.edu 36 13 101029703 101029703 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004791 exon5 c.A651C p.E217D . . . FGF14 2259 broad.mit.edu 36 13 101366819 101366819 + Intron SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_004115 exon1 c.A178G p.R60G . . . FGF14 2259 broad.mit.edu 36 13 101851934 101851934 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175929 exon1 c.G96T p.L32L . . . TPP2 7174 broad.mit.edu 36 13 102078246 102078246 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003291 exon8 c.C987T p.Y329Y . . . TPP2 7174 broad.mit.edu 36 13 102086612 102086612 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003291 exon13 c.C1547A p.S516X . . . TPP2 7174 broad.mit.edu 36 13 102115231 102115231 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_003291 exon26 c.T3287G p.I1096S . . . C13orf27 93081 broad.mit.edu 36 13 102217755 102217755 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138779 exon5 c.C373T p.R125W . . . KDELC1 79070 broad.mit.edu 36 13 102238229 102238229 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024089 exon8 c.C1339A p.L447I . . . KDELC1 79070 broad.mit.edu 36 13 102241321 102241321 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024089 exon6 c.C1014T p.F338F . . . ERCC5 2073 broad.mit.edu 36 13 102257699 102257699 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017693 exon3 c.G81T p.E27D . . . ERCC5 2073 broad.mit.edu 36 13 102322736 102322736 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000123 exon13 c.G2866A p.D956N . . . EFNB2 1948 broad.mit.edu 36 13 105945257 105945257 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004093 exon4 c.A586G p.T196A . . . LIG4 3981 broad.mit.edu 36 13 107659528 107659528 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002312 exon2 c.C2090T p.T697M . . . ABHD13 84945 broad.mit.edu 36 13 107679743 107679743 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032859 exon2 c.A176C p.K59T . . . TNFSF13B 10673 broad.mit.edu 36 13 107757225 107757225 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145645 exon5 c.G739T p.E247X . . . MYO16 23026 broad.mit.edu 36 13 108502803 108502803 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001198950 exon25 c.G3027T p.K1009N . . . MYO16 23026 broad.mit.edu 36 13 108505771 108505771 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198950 exon27 c.G3162T p.Q1054H . . . MYO16 23026 broad.mit.edu 36 13 108570792 108570792 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198950 exon29 c.G3512T p.R1171I . . . MYO16 23026 broad.mit.edu 36 13 108575578 108575578 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198950 exon30 c.A3653G p.Y1218C . . . COL4A1 1282 broad.mit.edu 36 13 109645386 109645386 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001845 exon22 c.G1366A p.E456K . . . C13orf16 121793 broad.mit.edu 36 13 110778556 110778556 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152324 exon3 c.T84G p.I28M . . . C13orf28 122258 broad.mit.edu 36 13 112134766 112134766 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145248 exon6 c.T453G p.N151K . . . TUBGCP3 10426 broad.mit.edu 36 13 112267481 112267481 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006322 exon3 c.G197A p.R66Q . . . ATP11A 23250 broad.mit.edu 36 13 112575935 112575935 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015205 exon27 c.C3105T p.I1035I . . . F10 2159 broad.mit.edu 36 13 112851328 112851328 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000504 exon8 c.C963T p.F321F . . . PCID2 55795 broad.mit.edu 36 13 112883493 112883493 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018386 exon10 c.G738T p.K246N . . . CUL4A 8451 broad.mit.edu 36 13 112945300 112945300 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008895 exon11 c.C1053T p.I351I . . . LAMP1 3916 broad.mit.edu 36 13 113022717 113022717 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005561 exon6 c.C807T p.C269C . . . LAMP1 3916 broad.mit.edu 36 13 113023970 113023970 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005561 exon8 c.G1041A p.T347T . . . ATP4B 496 broad.mit.edu 36 13 113355234 113355234 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000705 exon4 c.C510T p.F170F . . . RASA3 22821 broad.mit.edu 36 13 113807864 113807864 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007368 exon8 c.G673A p.E225K . . . CDC16 8881 broad.mit.edu 36 13 114042937 114042937 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001078645 exon14 c.C1276A p.L426I . . . ZNF828 283489 broad.mit.edu 36 13 114107441 114107441 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164145 exon3 c.C22T p.R8C . . . ZNF828 283489 broad.mit.edu 36 13 114108774 114108774 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164145 exon3 c.C1355A p.S452Y . . . TPTE2 93492 broad.mit.edu 36 13 18923334 18923334 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001141968 exon10 c.G440A p.R147Q . . . PSPC1 55269 broad.mit.edu 36 13 19231550 19231550 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042414 exon3 c.G683A p.R228H . . . PSPC1 55269 broad.mit.edu 36 13 19244427 19244427 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042414 exon2 c.G629A p.R210Q . . . ZMYM5 9205 broad.mit.edu 36 13 19297217 19297217 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142684 exon8 c.G1410T p.Q470H . . . ZMYM5 9205 broad.mit.edu 36 13 19310858 19310858 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039650 exon5 c.G854A p.R285Q . . . ZMYM5 9205 broad.mit.edu 36 13 19310933 19310933 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001039650 exon5 c.G779A p.R260Q . . . GJB6 10804 broad.mit.edu 36 13 19695482 19695482 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006783 exon3 c.C138T p.D46D . . . IFT88 8100 broad.mit.edu 36 13 20163282 20163282 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175605 exon28 c.G2470T p.E824X . . . XPO4 64328 broad.mit.edu 36 13 20279614 20279614 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022459 exon13 c.G1799A p.R600K . . . LATS2 26524 broad.mit.edu 36 13 20460238 20460238 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014572 exon4 c.G1681A p.A561T . . . LATS2 26524 broad.mit.edu 36 13 20518068 20518068 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014572 exon2 c.C98T p.S33L . . . SKA3 221150 broad.mit.edu 36 13 20640259 20640259 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166017 exon4 c.C611A p.P204Q . . . ZDHHC20 253832 broad.mit.edu 36 13 20853619 20853619 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_153251 exon11 c.A1011C p.E337D . . . ZDHHC20 253832 broad.mit.edu 36 13 20872523 20872523 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_153251 exon7 c.A583C p.K195Q . . . SGCG 6445 broad.mit.edu 36 13 22675840 22675840 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000231 exon2 c.C7T p.R3C . . . SGCG 6445 broad.mit.edu 36 13 22706842 22706842 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000231 exon3 c.C288A p.H96Q . . . SGCG 6445 broad.mit.edu 36 13 22792856 22792856 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000231 exon7 c.C659T p.A220V . . . SACS 26278 broad.mit.edu 36 13 22803110 22803110 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014363 exon10 c.C12905A p.S4302Y . . . SACS 26278 broad.mit.edu 36 13 22803348 22803348 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014363 exon10 c.A12667C p.K4223Q . . . SACS 26278 broad.mit.edu 36 13 22805021 22805021 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014363 exon10 c.G10994T p.R3665I . . . SACS 26278 broad.mit.edu 36 13 22805090 22805090 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon10 c.G10925T p.G3642V . . . SACS 26278 broad.mit.edu 36 13 22805566 22805566 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014363 exon10 c.A10449C p.P3483P . . . SACS 26278 broad.mit.edu 36 13 22806736 22806736 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon10 c.G9279T p.V3093V . . . SACS 26278 broad.mit.edu 36 13 22806898 22806898 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon10 c.A9117C p.K3039N . . . SACS 26278 broad.mit.edu 36 13 22807113 22807113 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon10 c.C8902A p.L2968I . . . SACS 26278 broad.mit.edu 36 13 22807694 22807694 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon10 c.G8321T p.R2774I . . . SACS 26278 broad.mit.edu 36 13 22809196 22809196 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014363 exon10 c.A6819C p.S2273S . . . SACS 26278 broad.mit.edu 36 13 22811102 22811102 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014363 exon10 c.G4913A p.S1638N . . . SACS 26278 broad.mit.edu 36 13 22811434 22811434 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon10 c.T4581C p.N1527N . . . SACS 26278 broad.mit.edu 36 13 22812615 22812615 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014363 exon10 c.G3400A p.V1134I . . . SACS 26278 broad.mit.edu 36 13 22813071 22813071 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon10 c.A2944C p.K982Q . . . SACS 26278 broad.mit.edu 36 13 22827770 22827770 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014363 exon8 c.G981T p.E327D . . . MIPEP 4285 broad.mit.edu 36 13 23232343 23232343 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005932 exon17 c.G1862A p.R621Q . . . MIPEP 4285 broad.mit.edu 36 13 23341524 23341524 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005932 exon7 c.G850T p.E284X . . . PARP4 143 broad.mit.edu 36 13 23958323 23958323 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006437 exon11 c.C1335T p.I445I . . . ATP12A 479 broad.mit.edu 36 13 24161463 24161463 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185085 exon5 c.G496T p.E166X . . . ATP12A 479 broad.mit.edu 36 13 24164635 24164635 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185085 exon9 c.G1155T p.V385V . . . ATP12A 479 broad.mit.edu 36 13 24166621 24166621 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185085 exon11 c.A1435C p.K479Q . . . ATP12A 479 broad.mit.edu 36 13 24170866 24170866 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185085 exon12 c.G1601A p.R534H . . . ATP12A 479 broad.mit.edu 36 13 24173049 24173049 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001185085 exon13 c.G1888A p.A630T . . . RNF17 56163 broad.mit.edu 36 13 24260132 24260132 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184993 exon7 c.G618T p.K206N . . . RNF17 56163 broad.mit.edu 36 13 24265367 24265367 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184993 exon10 c.A1123C p.N375H . . . RNF17 56163 broad.mit.edu 36 13 24297853 24297853 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184993 exon16 c.G2188T p.D730Y . . . RNF17 56163 broad.mit.edu 36 13 24316008 24316008 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001184993 exon20 c.T2730G p.F910L . . . CENPJ 55835 broad.mit.edu 36 13 24355389 24355389 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018451 exon17 c.G3943T p.E1315X . . . CENPJ 55835 broad.mit.edu 36 13 24371704 24371704 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018451 exon9 c.C2844T p.F948F . . . ATP8A2 51761 broad.mit.edu 36 13 25027171 25027171 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016529 exon13 c.G1228A p.A410T . . . ATP8A2 51761 broad.mit.edu 36 13 25053966 25053966 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016529 exon23 c.C2017A p.L673I . . . ATP8A2 51761 broad.mit.edu 36 13 25433765 25433765 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016529 exon34 c.C3236A p.P1079H . . . CDK8 1024 broad.mit.edu 36 13 25865555 25865555 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001260 exon7 c.T698G p.I233R . . . USP12 219333 broad.mit.edu 36 13 26588731 26588731 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182488 exon2 c.C51T p.G17G . . . LNX2 222484 broad.mit.edu 36 13 27025379 27025379 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153371 exon8 c.T1744C p.S582P . . . FLT3 2322 broad.mit.edu 36 13 27499234 27499234 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004119 exon17 c.C2198A p.P733Q . . . FLT3 2322 broad.mit.edu 36 13 27534159 27534160 + Missense_Mutation DNP GC TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_004119 exon3 c.212_213TA . . . . PAN3 255967 broad.mit.edu 36 13 27739485 27739485 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175854 exon12 c.G1739A p.S580N . . . PAN3 255967 broad.mit.edu 36 13 27749448 27749448 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175854 exon15 c.G2124T p.E708D . . . PAN3 255967 broad.mit.edu 36 13 27760202 27760202 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_175854 exon18 c.G2466T p.V822V . . . FLT1 2321 broad.mit.edu 36 13 27799613 27799613 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002019 exon20 c.T2782G p.F928V . . . FLT1 2321 broad.mit.edu 36 13 27857097 27857097 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002019 exon14 c.G2041T p.D681Y . . . SLC46A3 283537 broad.mit.edu 36 13 28185375 28185375 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181785 exon3 c.C502T p.R168X . . . MTUS2 23281 broad.mit.edu 36 13 28496891 28496891 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033602 exon1 c.G86T p.R29I . . . MTUS2 23281 broad.mit.edu 36 13 28497124 28497124 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033602 exon1 c.G319A p.D107N . . . MTUS2 23281 broad.mit.edu 36 13 28498045 28498045 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033602 exon1 c.G1240T p.G414X . . . MTUS2 23281 broad.mit.edu 36 13 28498576 28498576 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001033602 exon1 c.T1771C p.L591L . . . MTUS2 23281 broad.mit.edu 36 13 28506168 28506168 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001033602 exon2 c.G2382T p.R794S . . . SLC7A1 6541 broad.mit.edu 36 13 29005082 29005082 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003045 exon4 c.C408T p.F136F . . . UBL3 5412 broad.mit.edu 36 13 29249348 29249348 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007106 exon2 c.C80A p.S27Y . . . UBL3 5412 broad.mit.edu 36 13 29321672 29321672 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007106 exon1 c.T4C p.S2P . . . HMGB1 3146 broad.mit.edu 36 13 29934768 29934768 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002128 exon4 c.G378A p.A126A . . . USPL1 10208 broad.mit.edu 36 13 30114867 30114867 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005800 exon6 c.C1085T p.S362L . . . C13orf33 84935 broad.mit.edu 36 13 30393952 30393952 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032849 exon4 c.C756A p.F252L . . . RXFP2 122042 broad.mit.edu 36 13 31263998 31263998 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166058 exon14 c.C1129T p.P377S . . . FRY 10129 broad.mit.edu 36 13 31589505 31589505 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023037 exon4 c.G359A p.C120Y . . . FRY 10129 broad.mit.edu 36 13 31603932 31603932 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023037 exon8 c.G840T p.K280N . . . FRY 10129 broad.mit.edu 36 13 31619488 31619488 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_023037 exon12 c.C1249T p.R417X . . . FRY 10129 broad.mit.edu 36 13 31643149 31643149 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023037 exon18 c.G1893A p.R631R . . . FRY 10129 broad.mit.edu 36 13 31658504 31658504 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_023037 exon27 c.C3427T p.R1143C . . . FRY 10129 broad.mit.edu 36 13 31709625 31709625 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023037 exon44 c.G5920A p.E1974K . . . FRY 10129 broad.mit.edu 36 13 31711960 31711960 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_023037 exon46 c.G6629A p.R2210Q . . . BRCA2 675 broad.mit.edu 36 13 31791291 31791291 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000059 exon3 c.G145T p.E49X . . . BRCA2 675 broad.mit.edu 36 13 31804983 31804983 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000059 exon10 c.G1368T p.E456D . . . BRCA2 675 broad.mit.edu 36 13 31812129 31812129 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000059 exon11 c.G5637T p.E1879D . . . BRCA2 675 broad.mit.edu 36 13 31812542 31812542 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_000059 exon11 c.A6050C p.K2017T . . . BRCA2 675 broad.mit.edu 36 13 31813144 31813144 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000059 exon11 c.G6652T p.D2218Y . . . BRCA2 675 broad.mit.edu 36 13 31813220 31813220 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000059 exon11 c.C6728A p.S2243Y . . . BRCA2 675 broad.mit.edu 36 13 31851980 31851980 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_000059 exon23 c.C9047A p.S3016Y . . . N4BP2L2 10443 broad.mit.edu 36 13 31915983 31915983 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033111 exon7 c.G691T p.D231Y . . . N4BP2L2 10443 broad.mit.edu 36 13 31990079 31990079 + Missense_Mutation SNP G T T rs11556385 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014887 exon6 c.C1612A p.Q538K . . . PDS5B 23047 broad.mit.edu 36 13 32214753 32214753 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015032 exon23 c.C2500T p.R834X . . . PDS5B 23047 broad.mit.edu 36 13 32242644 32242644 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015032 exon32 c.C4010T p.T1337M . . . KL 9365 broad.mit.edu 36 13 32533145 32533145 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004795 exon4 c.G1929A p.P643P . . . KL 9365 broad.mit.edu 36 13 32533558 32533558 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004795 exon4 c.G2342T p.R781I . . . KL 9365 broad.mit.edu 36 13 32536124 32536124 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004795 exon5 c.T2840G p.I947S . . . KL 9365 broad.mit.edu 36 13 32536278 32536278 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004795 exon5 c.C2994A p.S998S . . . NBEA 26960 broad.mit.edu 36 13 34632058 34632058 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015678 exon22 c.A3750C p.K1250N . . . NBEA 26960 broad.mit.edu 36 13 34656155 34656155 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015678 exon30 c.G4874T p.G1625V . . . NBEA 26960 broad.mit.edu 36 13 34668201 34668201 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015678 exon31 c.G5128A p.E1710K . . . NBEA 26960 broad.mit.edu 36 13 34904473 34904473 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015678 exon39 c.C6247T p.R2083C . . . MAB21L1 4081 broad.mit.edu 36 13 34948171 34948171 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005584 exon1 c.C105A p.C35X . . . DCLK1 9201 broad.mit.edu 36 13 35265513 35265513 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195416 exon12 c.C1127A p.S376Y . . . DCLK1 9201 broad.mit.edu 36 13 35294965 35294965 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001195416 exon7 c.G534T p.E178D . . . SPG20 23111 broad.mit.edu 36 13 35776765 35776765 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142295 exon9 c.G1738A p.G580R . . . CCNA1 8900 broad.mit.edu 36 13 35904787 35904787 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003914 exon1 c.A29G p.Y10C . . . CCNA1 8900 broad.mit.edu 36 13 35905242 35905242 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001111047 exon2 c.C49T p.R17X . . . C13orf36 400120 broad.mit.edu 36 13 36167376 36167376 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203451 exon2 c.T161G p.F54C . . . C13orf36 400120 broad.mit.edu 36 13 36167535 36167535 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_203451 exon2 c.C320A p.S107Y . . . SMAD9 4093 broad.mit.edu 36 13 36344795 36344795 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005905 exon3 c.G670T p.D224Y . . . ALG5 29880 broad.mit.edu 36 13 36422129 36422129 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142364 exon9 c.C835T p.R279X . . . FAM48A 55578 broad.mit.edu 36 13 36496207 36496207 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017569 exon19 c.C1559A p.S520Y . . . FAM48A 55578 broad.mit.edu 36 13 36497555 36497555 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017569 exon17 c.G1234T p.E412X . . . CSNK1A1L 122011 broad.mit.edu 36 13 36576626 36576626 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145203 exon1 c.C768T p.F256F . . . TRPC4 7223 broad.mit.edu 36 13 37109066 37109066 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135957 exon11 c.G2485A p.E829K . . . TRPC4 7223 broad.mit.edu 36 13 37109466 37109466 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016179 exon11 c.G2508T p.V836V . . . FREM2 341640 broad.mit.edu 36 13 38163478 38163478 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207361 exon1 c.G3997T p.D1333Y . . . FREM2 341640 broad.mit.edu 36 13 38163545 38163545 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207361 exon1 c.G4064A p.R1355Q . . . FREM2 341640 broad.mit.edu 36 13 38348481 38348481 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207361 exon20 c.G8506T p.E2836X . . . FREM2 341640 broad.mit.edu 36 13 38351093 38351093 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207361 exon23 c.C8985T p.V2995V . . . FREM2 341640 broad.mit.edu 36 13 38352470 38352470 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207361 exon24 c.C9056T p.S3019L . . . STOML3 161003 broad.mit.edu 36 13 38440553 38440553 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144033 exon7 c.G608A p.R203Q . . . COG6 57511 broad.mit.edu 36 13 39191445 39191445 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145079 exon14 c.T1357G p.L453V . . . SLC25A15 10166 broad.mit.edu 36 13 40279512 40279512 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014252 exon5 c.C535T p.R179X . . . ELF1 1997 broad.mit.edu 36 13 40413075 40413075 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_172373 exon8 c.C1238A p.S413Y . . . KBTBD6 89890 broad.mit.edu 36 13 40602633 40602633 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152903 exon1 c.C2015T p.A672V . . . KBTBD6 89890 broad.mit.edu 36 13 40603091 40603091 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152903 exon1 c.C1557T p.C519C . . . KBTBD7 84078 broad.mit.edu 36 13 40664758 40664758 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032138 exon1 c.C1636T p.R546W . . . KBTBD7 84078 broad.mit.edu 36 13 40665132 40665132 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032138 exon1 c.G1262A p.R421H . . . MTRF1 9617 broad.mit.edu 36 13 40724864 40724864 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004294 exon5 c.G614A p.R205Q . . . NAA16 79612 broad.mit.edu 36 13 40797936 40797936 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024561 exon6 c.G640T p.E214X . . . NAA16 79612 broad.mit.edu 36 13 40831037 40831037 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_024561 exon12 c.A1349C p.K450T . . . KIAA0564 23078 broad.mit.edu 36 13 41173564 41173564 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015058 exon28 c.G3328T p.E1110X . . . KIAA0564 23078 broad.mit.edu 36 13 41191873 41191873 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015058 exon26 c.T2970C p.F990F . . . KIAA0564 23078 broad.mit.edu 36 13 41233334 41233334 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015058 exon21 c.G2356T p.G786X . . . KIAA0564 23078 broad.mit.edu 36 13 41359370 41359370 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015058 exon6 c.G779A p.R260Q . . . KIAA0564 23078 broad.mit.edu 36 13 41422079 41422079 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015058 exon2 c.G234A p.Q78Q . . . DGKH 160851 broad.mit.edu 36 13 41638747 41638747 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178009 exon9 c.G1055A p.R352H . . . DGKH 160851 broad.mit.edu 36 13 41671954 41671954 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178009 exon20 c.G2402A p.R801Q . . . AKAP11 11215 broad.mit.edu 36 13 41772681 41772681 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016248 exon8 c.G1799T p.R600I . . . AKAP11 11215 broad.mit.edu 36 13 41773403 41773403 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016248 exon8 c.G2521A p.E841K . . . ENOX1 55068 broad.mit.edu 36 13 42708869 42708869 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127615 exon15 c.C1617A p.I539I . . . CCDC122 160857 broad.mit.edu 36 13 43332060 43332060 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144974 exon5 c.T303C p.H101H . . . TSC22D1 8848 broad.mit.edu 36 13 44047345 44047345 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183422 exon1 c.T866C p.V289A . . . KIAA1704 55425 broad.mit.edu 36 13 44500086 44500086 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018559 exon8 c.C971A p.S324Y . . . KCTD4 386618 broad.mit.edu 36 13 44666399 44666399 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198404 exon2 c.G304A p.E102K . . . GTF2F2 2963 broad.mit.edu 36 13 44679630 44679630 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004128 exon5 c.C376T p.R126X . . . SLC25A30 253512 broad.mit.edu 36 13 44869415 44869415 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010875 exon9 c.G812T p.R271I . . . COG3 83548 broad.mit.edu 36 13 44948390 44948390 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031431 exon2 c.G228T p.L76L . . . SPERT 220082 broad.mit.edu 36 13 45185330 45185330 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152719 exon3 c.G169A p.E57K . . . SIAH3 283514 broad.mit.edu 36 13 45323655 45323655 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198849 exon1 c.C111T p.V37V . . . ZC3H13 23091 broad.mit.edu 36 13 45440125 45440125 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015070 exon15 c.C3836A p.S1279Y . . . ZC3H13 23091 broad.mit.edu 36 13 45440899 45440899 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015070 exon14 c.C3781T p.R1261X . . . ZC3H13 23091 broad.mit.edu 36 13 45441094 45441094 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015070 exon14 c.C3586T p.R1196W . . . ZC3H13 23091 broad.mit.edu 36 13 45460971 45460971 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015070 exon9 c.C1207A p.H403N . . . CPB2 1361 broad.mit.edu 36 13 45530343 45530343 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016413 exon8 c.G860A p.R287Q . . . C13orf18 80183 broad.mit.edu 36 13 45815592 45815592 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_025113 exon15 c.G1918A p.E640K . . . LRCH1 23143 broad.mit.edu 36 13 46141168 46141168 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164211 exon3 c.G455A p.R152Q . . . HTR2A 3356 broad.mit.edu 36 13 46367875 46367875 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000621 exon2 c.C168A p.S56S . . . HTR2A 3356 broad.mit.edu 36 13 46368014 46368014 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000621 exon2 c.C29A p.S10Y . . . SUCLA2 8803 broad.mit.edu 36 13 47426638 47426638 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003850 exon7 c.G858T p.K286N . . . NUDT15 55270 broad.mit.edu 36 13 47513146 47513146 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018283 exon2 c.C248A p.S83Y . . . ITM2B 9445 broad.mit.edu 36 13 47728430 47728430 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021999 exon3 c.C363A p.I121I . . . ITM2B 9445 broad.mit.edu 36 13 47733314 47733314 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021999 exon6 c.C754T p.R252W . . . RB1 5925 broad.mit.edu 36 13 47835071 47835071 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000321 exon8 c.G838T p.E280X . . . RB1 5925 broad.mit.edu 36 13 47851749 47851749 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000321 exon14 c.C1351T p.R451C . . . LPAR6 10161 broad.mit.edu 36 13 47883560 47883560 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005767 exon7 c.A1001C p.K334T . . . LPAR6 10161 broad.mit.edu 36 13 47883677 47883677 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005767 exon7 c.C884T p.S295L . . . LPAR6 10161 broad.mit.edu 36 13 47884519 47884519 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005767 exon7 c.C42A p.S14S . . . FNDC3A 22862 broad.mit.edu 36 13 48640801 48640801 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079673 exon10 c.C1089A p.I363I . . . FNDC3A 22862 broad.mit.edu 36 13 48670672 48670672 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001079673 exon23 c.C2948A p.S983Y . . . CDADC1 81602 broad.mit.edu 36 13 48739639 48739639 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030911 exon5 c.G443A p.R148Q . . . CAB39L 81617 broad.mit.edu 36 13 48855002 48855002 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_030925 exon2 c.G46T p.E16X . . . SETDB2 83852 broad.mit.edu 36 13 48948779 48948779 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160308 exon5 c.A472C p.K158Q . . . TRIM13 10206 broad.mit.edu 36 13 49484952 49484952 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005798 exon3 c.T875C p.V292A . . . TRIM13 10206 broad.mit.edu 36 13 49485238 49485238 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005798 exon3 c.G1161T p.K387N . . . FAM124A 220108 broad.mit.edu 36 13 50723728 50723728 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_145019 exon4 c.A332G p.D111G . . . INTS6 26512 broad.mit.edu 36 13 50848188 50848188 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012141 exon13 c.G1726A p.E576K . . . INTS6 26512 broad.mit.edu 36 13 50859532 50859532 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012141 exon7 c.G885A p.S295S . . . CCDC70 83446 broad.mit.edu 36 13 51337853 51337853 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031290 exon2 c.C338A p.S113Y . . . ATP7B 540 broad.mit.edu 36 13 51447228 51447228 + Silent SNP G C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000053 exon2 c.C129G p.G43G . . . UTP14C 9724 broad.mit.edu 36 13 51501502 51501502 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_021645 exon2 c.T561G p.I187M . . . UTP14C 9724 broad.mit.edu 36 13 51501943 51501943 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021645 exon2 c.G1002T p.Q334H . . . UTP14C 9724 broad.mit.edu 36 13 51502656 51502656 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021645 exon2 c.C1715A p.S572Y . . . UTP14C 9724 broad.mit.edu 36 13 51502762 51502762 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021645 exon2 c.C1821T p.F607F . . . NEK5 341676 broad.mit.edu 36 13 51580525 51580525 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199289 exon8 c.C484T p.R162X . . . NEK3 4752 broad.mit.edu 36 13 51623365 51623365 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001146099 exon7 c.G465A p.P155P . . . PCDH8 5100 broad.mit.edu 36 13 52316723 52316723 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032949 exon3 c.G2895A p.P965P . . . PCDH17 27253 broad.mit.edu 36 13 57105198 57105198 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001040429 exon1 c.C517T p.R173C . . . PCDH17 27253 broad.mit.edu 36 13 57197276 57197276 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040429 exon4 c.G3327T p.R1109R . . . TDRD3 81550 broad.mit.edu 36 13 59958051 59958051 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146071 exon7 c.G406A p.A136T . . . TDRD3 81550 broad.mit.edu 36 13 60039678 60039678 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146071 exon13 c.G1858A p.D620N . . . PCDH9 5101 broad.mit.edu 36 13 66698974 66698974 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020403 exon2 c.G1600A p.E534K . . . PCDH9 5101 broad.mit.edu 36 13 66699369 66699369 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020403 exon2 c.T1205G p.F402C . . . C13orf34 79866 broad.mit.edu 36 13 72203524 72203524 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024808 exon3 c.T258C p.S86S . . . DIS3 22894 broad.mit.edu 36 13 72245917 72245917 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128226 exon8 c.G1055A p.R352Q . . . TBC1D4 9882 broad.mit.edu 36 13 74759109 74759109 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014832 exon21 c.G3717A p.T1239T . . . TBC1D4 9882 broad.mit.edu 36 13 74796522 74796522 + Nonsense_Mutation SNP G A A rs61736969 by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014832 exon11 c.C2050T p.R684X . . . TBC1D4 9882 broad.mit.edu 36 13 74831936 74831936 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014832 exon3 c.G1140T p.K380N . . . UCHL3 7347 broad.mit.edu 36 13 75039440 75039440 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006002 exon5 c.G417T p.E139D . . . LMO7 4008 broad.mit.edu 36 13 75272930 75272930 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005358 exon8 c.G728T p.R243I . . . LMO7 4008 broad.mit.edu 36 13 75277724 75277724 + Intron SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015842 exon6 c.A324G p.I108M . . . KCTD12 115207 broad.mit.edu 36 13 76357447 76357447 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138444 exon1 c.G838A p.A280T . . . FBXL3 26224 broad.mit.edu 36 13 76479688 76479688 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012158 exon5 c.T880G p.F294V . . . FBXL3 26224 broad.mit.edu 36 13 76487660 76487660 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012158 exon4 c.G528A p.S176S . . . MYCBP2 23077 broad.mit.edu 36 13 76555241 76555241 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015057 exon63 c.C10963T p.R3655C . . . MYCBP2 23077 broad.mit.edu 36 13 76616582 76616582 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015057 exon49 c.C7302T p.I2434I . . . MYCBP2 23077 broad.mit.edu 36 13 76736067 76736067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015057 exon9 c.G1429T p.D477Y . . . SCEL 8796 broad.mit.edu 36 13 77109283 77109283 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001160706 exon28 c.G1665T p.E555D . . . EDNRB 1910 broad.mit.edu 36 13 77372010 77372010 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122659 exon6 c.C1179T p.F393F . . . EDNRB 1910 broad.mit.edu 36 13 77372697 77372697 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122659 exon5 c.C1045A p.L349I . . . EDNRB 1910 broad.mit.edu 36 13 77373269 77373269 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001122659 exon4 c.T876G p.F292L . . . RNF219 79596 broad.mit.edu 36 13 78088572 78088572 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024546 exon6 c.C1325A p.S442Y . . . RNF219 79596 broad.mit.edu 36 13 78088858 78088858 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024546 exon6 c.G1039T p.E347X . . . RNF219 79596 broad.mit.edu 36 13 78089021 78089021 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024546 exon6 c.G876T p.K292N . . . RBM26 64062 broad.mit.edu 36 13 78830565 78830565 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022118 exon11 c.A1534C p.N512H . . . SPRY2 10253 broad.mit.edu 36 13 79809715 79809715 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005842 exon2 c.C127T p.L43L . . . SLITRK1 114798 broad.mit.edu 36 13 83352469 83352469 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052910 exon1 c.A1175C p.K392T . . . SLITRK1 114798 broad.mit.edu 36 13 83353191 83353191 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052910 exon1 c.G453T p.Q151H . . . SLITRK6 84189 broad.mit.edu 36 13 85268074 85268074 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032229 exon2 c.C571T p.R191C . . . GPC5 2262 broad.mit.edu 36 13 91206586 91206586 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004466 exon5 c.C1191A p.F397L . . . DCT 1638 broad.mit.edu 36 13 93890218 93890218 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001922 exon8 c.C1495T p.R499X . . . DCT 1638 broad.mit.edu 36 13 93910437 93910437 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001922 exon6 c.C1088A p.S363Y . . . DCT 1638 broad.mit.edu 36 13 93916821 93916821 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001922 exon3 c.G688A p.D230N . . . TGDS 23483 broad.mit.edu 36 13 94041151 94041151 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014305 exon4 c.G270T p.E90D . . . SOX21 11166 broad.mit.edu 36 13 94162053 94162053 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007084 exon1 c.G252A p.K84K . . . CLDN10 9071 broad.mit.edu 36 13 95010692 95010692 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006984 exon3 c.C438A p.F146L . . . DZIP1 22873 broad.mit.edu 36 13 95037900 95037900 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014934 exon19 c.G2055A p.P685P . . . DZIP1 22873 broad.mit.edu 36 13 95059762 95059762 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198968 exon13 c.C1370A p.P457H . . . DZIP1 22873 broad.mit.edu 36 13 95062408 95062408 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014934 exon11 c.C1198T p.R400X . . . DZIP1 22873 broad.mit.edu 36 13 95080325 95080325 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014934 exon7 c.C729T p.I243I . . . UGGT2 55757 broad.mit.edu 36 13 95304695 95304695 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020121 exon35 c.C4044T p.F1348F . . . UGGT2 55757 broad.mit.edu 36 13 95328018 95328018 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020121 exon28 c.C3322A p.L1108M . . . UGGT2 55757 broad.mit.edu 36 13 95440327 95440327 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020121 exon8 c.G832T p.E278X . . . UGGT2 55757 broad.mit.edu 36 13 95463597 95463597 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020121 exon5 c.G625T p.E209X . . . MBNL2 10150 broad.mit.edu 36 13 96797259 96797259 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207304 exon5 c.G741A p.A247A . . . IPO5 3843 broad.mit.edu 36 13 97467039 97467039 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002271 exon25 c.T2603G p.F868C . . . RNF113B 140432 broad.mit.edu 36 13 97626771 97626771 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178861 exon1 c.G721A p.E241K . . . FARP1 10160 broad.mit.edu 36 13 97897067 97897067 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005766 exon26 c.C3051T p.F1017F . . . SLC15A1 6564 broad.mit.edu 36 13 98136533 98136533 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005073 exon22 c.C1847T p.S616L . . . SLC15A1 6564 broad.mit.edu 36 13 98138755 98138755 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005073 exon19 c.C1544T p.A515V . . . SLC15A1 6564 broad.mit.edu 36 13 98176639 98176639 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005073 exon3 c.C87A p.S29S . . . DOCK9 23348 broad.mit.edu 36 13 98313754 98313754 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001130050 exon31 c.C3336A p.F1112L . . . DOCK9 23348 broad.mit.edu 36 13 98333322 98333322 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001130050 exon23 c.G2534A p.G845E . . . GPR18 2841 broad.mit.edu 36 13 98705896 98705896 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005292 exon3 c.C232T p.R78X . . . TM9SF2 9375 broad.mit.edu 36 13 99009650 99009650 + Silent SNP G A A rs7330734 by-cluster,by-frequency,by-2hit-2allele,by-hapmap,by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004800 exon16 c.G1785A p.T595T . . . PCCA 5095 broad.mit.edu 36 13 99607578 99607578 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178004 exon6 c.G451T p.E151X . . . PCCA 5095 broad.mit.edu 36 13 99760161 99760161 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178004 exon16 c.G1427A p.R476Q . . . PCCA 5095 broad.mit.edu 36 13 99977950 99977950 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178004 exon22 c.T1920G p.I640M . . . PCGF5 84333 broad.mit.edu 36 10 93011117 93011117 + Frame_Shift_Del DEL A - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032373 exon7 c.529delA p.K177fs . . . PYROXD2 84795 broad.mit.edu 36 10 100134773 100134773 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032709 exon15 c.C1596T p.F532F . . . HPSE2 60495 broad.mit.edu 36 10 100894137 100894137 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166246 exon3 c.G458A p.R153Q . . . HPSE2 60495 broad.mit.edu 36 10 100985376 100985376 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166246 exon1 c.G174T p.K58N . . . CNNM1 26507 broad.mit.edu 36 10 101110614 101110614 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020348 exon3 c.C1750T p.R584W . . . CNNM1 26507 broad.mit.edu 36 10 101112135 101112135 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020348 exon4 c.C2020A p.L674I . . . GOT1 2805 broad.mit.edu 36 10 101153346 101153346 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002079 exon7 c.G829T p.E277X . . . COX15 1355 broad.mit.edu 36 10 101477289 101477289 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004376 exon3 c.G294A p.S98S . . . COX15 1355 broad.mit.edu 36 10 101479316 101479316 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004376 exon2 c.C256A p.L86I . . . COX15 1355 broad.mit.edu 36 10 101479465 101479465 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004376 exon2 c.G107A p.R36H . . . ABCC2 1244 broad.mit.edu 36 10 101534517 101534517 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000392 exon2 c.C196A p.L66I . . . DNMBP 23268 broad.mit.edu 36 10 101657783 101657783 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015221 exon6 c.C2513T p.S838L . . . CPN1 1369 broad.mit.edu 36 10 101792216 101792216 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001308 exon9 c.G1335A p.K445K . . . CPN1 1369 broad.mit.edu 36 10 101804126 101804126 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001308 exon7 c.C1079A p.S360Y . . . CPN1 1369 broad.mit.edu 36 10 101825684 101825684 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001308 exon2 c.G394A p.D132N . . . CHUK 1147 broad.mit.edu 36 10 101954313 101954313 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001278 exon13 c.T1447G p.F483V . . . CHUK 1147 broad.mit.edu 36 10 101956977 101956977 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001278 exon11 c.G1231T p.V411L . . . BLOC1S2 282991 broad.mit.edu 36 10 102025213 102025213 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173809 exon5 c.G425A p.R142Q . . . PKD2L1 9033 broad.mit.edu 36 10 102045935 102045935 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016112 exon7 c.C1290T p.F430F . . . SEC31B 25956 broad.mit.edu 36 10 102252132 102252132 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015490 exon11 c.G1279T p.E427X . . . HIF1AN 55662 broad.mit.edu 36 10 102286261 102286261 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017902 exon2 c.G281A p.S94N . . . PAX2 5076 broad.mit.edu 36 10 102556233 102556233 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003987 exon7 c.C742T p.R248W . . . FAM178A 55719 broad.mit.edu 36 10 102688448 102688448 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018121 exon11 c.G2619T p.E873D . . . C10orf2 56652 broad.mit.edu 36 10 102738283 102738283 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001163812 exon1 c.G326A p.G109D . . . LBX1 10660 broad.mit.edu 36 10 102977337 102977337 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006562 exon2 c.C526T p.R176W . . . BTRC 8945 broad.mit.edu 36 10 103275762 103275762 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003939 exon5 c.C451T p.R151W . . . BTRC 8945 broad.mit.edu 36 10 103300467 103300467 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003939 exon13 c.C1570T p.R524X . . . KCNIP2 30819 broad.mit.edu 36 10 103577107 103577107 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173192 exon9 c.T752C p.V251A . . . HPS6 79803 broad.mit.edu 36 10 103817481 103817481 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024747 exon1 c.C2260A p.L754I . . . LDB1 8861 broad.mit.edu 36 10 103859700 103859700 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001113407 exon7 c.G616T p.E206X . . . GBF1 8729 broad.mit.edu 36 10 104109968 104109968 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199378 exon12 c.C1218T p.R406R . . . GBF1 8729 broad.mit.edu 36 10 104126698 104126698 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199378 exon33 c.G4305T p.E1435D . . . NFKB2 4791 broad.mit.edu 36 10 104146482 104146482 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001077493 exon5 c.G155A p.R52Q . . . ARL3 403 broad.mit.edu 36 10 104426647 104426647 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004311 exon6 c.G543T p.K181N . . . CNNM2 54805 broad.mit.edu 36 10 104669482 104669482 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199077 exon1 c.C1255T p.R419W . . . CNNM2 54805 broad.mit.edu 36 10 104677113 104677113 + Intron SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199077 exon2 c.A1643C p.K548T . . . CNNM2 54805 broad.mit.edu 36 10 104799526 104799526 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199076 exon2 c.G1694A p.G565E . . . TAF5 6877 broad.mit.edu 36 10 105137376 105137376 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006951 exon10 c.G2116T p.E706X . . . SLK 9748 broad.mit.edu 36 10 105742796 105742796 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014720 exon4 c.G429T p.L143F . . . SLK 9748 broad.mit.edu 36 10 105752394 105752394 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014720 exon9 c.G1468T p.E490X . . . SLK 9748 broad.mit.edu 36 10 105752790 105752790 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014720 exon9 c.A1864C p.N622H . . . C10orf78 119392 broad.mit.edu 36 10 105873558 105873558 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002759 exon3 c.G232T p.E78X . . . C10orf79 80217 broad.mit.edu 36 10 105975297 105975297 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025145 exon3 c.C328T p.L110F . . . GSTO2 119391 broad.mit.edu 36 10 106048949 106048949 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001191013 exon6 c.C547A p.L183I . . . CCDC147 159686 broad.mit.edu 36 10 106120666 106120666 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008723 exon7 c.A954C p.Q318H . . . CCDC147 159686 broad.mit.edu 36 10 106149127 106149127 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008723 exon12 c.G1694T p.R565I . . . CCDC147 159686 broad.mit.edu 36 10 106204183 106204183 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008723 exon18 c.G2524A p.A842T . . . SORCS3 22986 broad.mit.edu 36 10 106592557 106592557 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014978 exon2 c.G645A p.T215T . . . SORCS3 22986 broad.mit.edu 36 10 106897461 106897461 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014978 exon9 c.C1399T p.R467C . . . SORCS1 114815 broad.mit.edu 36 10 108367907 108367907 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052918 exon21 c.C2910T p.I970I . . . SORCS1 114815 broad.mit.edu 36 10 108402292 108402292 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052918 exon18 c.G2313A p.K771K . . . XPNPEP1 7511 broad.mit.edu 36 10 111619760 111619760 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167604 exon18 c.G1642T p.D548Y . . . XPNPEP1 7511 broad.mit.edu 36 10 111657483 111657483 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001167604 exon3 c.G202A p.E68K . . . DUSP5 1847 broad.mit.edu 36 10 112256831 112256831 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004419 exon3 c.A677C p.K226T . . . SMC3 9126 broad.mit.edu 36 10 112327585 112327585 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005445 exon6 c.C273T p.I91I . . . SMC3 9126 broad.mit.edu 36 10 112340292 112340292 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005445 exon16 c.A1642G p.T548A . . . PDCD4 27250 broad.mit.edu 36 10 112645819 112645819 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145341 exon12 c.G1300T p.D434Y . . . SHOC2 8036 broad.mit.edu 36 10 112714653 112714653 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007373 exon2 c.G547T p.E183X . . . SHOC2 8036 broad.mit.edu 36 10 112759469 112759469 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_007373 exon8 c.C1431A p.V477V . . . SHOC2 8036 broad.mit.edu 36 10 112761457 112761457 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007373 exon9 c.G1640T p.S547I . . . GPAM 57678 broad.mit.edu 36 10 113910409 113910409 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020918 exon16 c.G1702A p.E568K . . . TECTB 6975 broad.mit.edu 36 10 114034291 114034291 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_058222 exon2 c.C85A p.L29I . . . ZDHHC6 64429 broad.mit.edu 36 10 114182009 114182009 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022494 exon10 c.C1117A p.L373I . . . TCF7L2 6934 broad.mit.edu 36 10 114902111 114902111 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001146284 exon10 c.G1110A p.A370A . . . NRAP 4892 broad.mit.edu 36 10 115354603 115354603 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198060 exon35 c.G3982A p.D1328N . . . NRAP 4892 broad.mit.edu 36 10 115383882 115383882 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198060 exon15 c.C1506A p.I502I . . . NRAP 4892 broad.mit.edu 36 10 115396686 115396686 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198060 exon10 c.G979A p.E327K . . . NRAP 4892 broad.mit.edu 36 10 115401563 115401563 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198060 exon7 c.C664A p.L222I . . . NRAP 4892 broad.mit.edu 36 10 115413137 115413137 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198060 exon2 c.A131G p.N44S . . . DCLRE1A 9937 broad.mit.edu 36 10 115599258 115599258 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014881 exon2 c.G1596A p.P532P . . . DCLRE1A 9937 broad.mit.edu 36 10 115599688 115599688 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014881 exon2 c.C1166A p.S389Y . . . TDRD1 56165 broad.mit.edu 36 10 115953236 115953236 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198795 exon8 c.G901T p.E301X . . . ABLIM1 3983 broad.mit.edu 36 10 116222806 116222806 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006720 exon6 c.G331T p.E111X . . . ABLIM1 3983 broad.mit.edu 36 10 116294793 116294793 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002313 exon6 c.T855C p.C285C . . . FAM160B1 57700 broad.mit.edu 36 10 116592882 116592882 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020940 exon6 c.C723T p.N241N . . . FAM160B1 57700 broad.mit.edu 36 10 116605000 116605000 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020940 exon14 c.G1858T p.A620S . . . ATRNL1 26033 broad.mit.edu 36 10 116920810 116920810 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207303 exon8 c.G1118T p.R373I . . . GFRA1 2674 broad.mit.edu 36 10 117813913 117813913 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145453 exon10 c.A1369T p.T457S . . . C10orf96 374355 broad.mit.edu 36 10 118090338 118090338 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198515 exon4 c.C268T p.L90F . . . PNLIPRP3 119548 broad.mit.edu 36 10 118218817 118218817 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001011709 exon9 c.C1058T p.A353V . . . PNLIPRP3 119548 broad.mit.edu 36 10 118226193 118226193 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001011709 exon11 c.C1212T p.I404I . . . PNLIPRP2 5408 broad.mit.edu 36 10 118394554 118394554 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005396 exon13 c.G1368A p.A456A . . . KIAA1598 57698 broad.mit.edu 36 10 118679420 118679420 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018330 exon10 c.G942T p.E314D . . . KCNK18 338567 broad.mit.edu 36 10 118959138 118959138 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181840 exon3 c.C493T p.R165W . . . KCNK18 338567 broad.mit.edu 36 10 118959394 118959394 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181840 exon3 c.G749A p.S250N . . . KCNK18 338567 broad.mit.edu 36 10 118959587 118959587 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181840 exon3 c.C942A p.F314L . . . SLC18A2 6571 broad.mit.edu 36 10 118993740 118993740 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003054 exon3 c.A390G p.Q130Q . . . SLC18A2 6571 broad.mit.edu 36 10 119019908 119019908 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003054 exon15 c.C1384A p.L462I . . . PDZD8 118987 broad.mit.edu 36 10 119034216 119034216 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173791 exon5 c.C2018T p.S673L . . . PDZD8 118987 broad.mit.edu 36 10 119039705 119039705 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173791 exon4 c.C1243T p.R415X . . . EMX2 2018 broad.mit.edu 36 10 119295152 119295152 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004098 exon2 c.G426T p.E142D . . . EMX2 2018 broad.mit.edu 36 10 119295273 119295273 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004098 exon2 c.G547A p.E183K . . . C10orf84 63877 broad.mit.edu 36 10 120060398 120060398 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134672 exon8 c.G663T p.K221N . . . UPF2 26019 broad.mit.edu 36 10 12011892 12011892 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080599 exon21 c.C3787A p.L1263I . . . UPF2 26019 broad.mit.edu 36 10 12038338 12038338 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080599 exon13 c.G2561A p.R854Q . . . EIF3A 8661 broad.mit.edu 36 10 120786656 120786656 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003750 exon21 c.G3884A p.R1295Q . . . EIF3A 8661 broad.mit.edu 36 10 120791933 120791933 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003750 exon19 c.G3089A p.R1030Q . . . EIF3A 8661 broad.mit.edu 36 10 120800087 120800087 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003750 exon16 c.G2409A p.R803R . . . UPF2 26019 broad.mit.edu 36 10 12083693 12083693 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080599 exon6 c.C1642A p.L548I . . . FAM45A 404636 broad.mit.edu 36 10 120885994 120885994 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207009 exon9 c.G919A p.E307K . . . GRK5 2869 broad.mit.edu 36 10 121130345 121130345 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005308 exon3 c.G177A p.K59K . . . UPF2 26019 broad.mit.edu 36 10 12117386 12117386 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080599 exon2 c.G43T p.D15Y . . . GRK5 2869 broad.mit.edu 36 10 121193186 121193186 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005308 exon12 c.C1198T p.R400W . . . INPP5F 22876 broad.mit.edu 36 10 121541669 121541669 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014937 exon6 c.G623A p.R208Q . . . INPP5F 22876 broad.mit.edu 36 10 121559687 121559687 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014937 exon14 c.G1655A p.R552Q . . . SEC23IP 11196 broad.mit.edu 36 10 121679922 121679922 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007190 exon15 c.G2561T p.R854I . . . DHTKD1 55526 broad.mit.edu 36 10 12176147 12176147 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018706 exon7 c.G1229A p.R410Q . . . DHTKD1 55526 broad.mit.edu 36 10 12190001 12190001 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018706 exon12 c.G2135A p.R712Q . . . WDR11 55717 broad.mit.edu 36 10 122638606 122638606 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018117 exon17 c.C2148T p.I716I . . . WDR11 55717 broad.mit.edu 36 10 122658201 122658201 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018117 exon29 c.C3661T p.P1221S . . . FGFR2 2263 broad.mit.edu 36 10 123229498 123229498 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144916 exon15 c.G1984A p.E662K . . . FGFR2 2263 broad.mit.edu 36 10 123236925 123236925 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144916 exon12 c.C1645T p.R549W . . . FGFR2 2263 broad.mit.edu 36 10 123248020 123248020 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144916 exon9 c.C1306A p.L436I . . . FGFR2 2263 broad.mit.edu 36 10 123288215 123288215 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001144916 exon3 c.G284A p.R95Q . . . CDC123 8872 broad.mit.edu 36 10 12332320 12332320 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006023 exon13 c.G989T p.R330I . . . ATE1 11101 broad.mit.edu 36 10 123586321 123586321 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001976 exon10 c.G1159A p.E387K . . . TACC2 10579 broad.mit.edu 36 10 123834596 123834596 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_206862 exon4 c.G2591A p.G864D . . . TACC2 10579 broad.mit.edu 36 10 123882127 123882127 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_206861 exon4 c.G160T p.D54Y . . . BTBD16 118663 broad.mit.edu 36 10 124039502 124039502 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_144587 exon6 c.C474T p.V158V . . . BTBD16 118663 broad.mit.edu 36 10 124056766 124056766 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144587 exon10 c.G864T p.K288N . . . BTBD16 118663 broad.mit.edu 36 10 124084408 124084408 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144587 exon14 c.C1187T p.T396M . . . PLEKHA1 59338 broad.mit.edu 36 10 124142823 124142823 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001001974 exon2 c.C117T p.F39F . . . DMBT1 1755 broad.mit.edu 36 10 124374793 124374793 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_007329 exon42 c.A5232C p.I1744I . . . C10orf120 399814 broad.mit.edu 36 10 124447994 124447994 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001010912 exon3 c.C253T p.R85C . . . CUZD1 50624 broad.mit.edu 36 10 124583351 124583351 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022034 exon8 c.C1478A p.S493Y . . . CUZD1 50624 broad.mit.edu 36 10 124586935 124586935 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022034 exon4 c.A574G p.I192V . . . PSTK 118672 broad.mit.edu 36 10 124732793 124732793 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153336 exon3 c.G524A p.C175Y . . . CPXM2 119587 broad.mit.edu 36 10 125496357 125496357 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198148 exon14 c.G2184T p.E728D . . . CPXM2 119587 broad.mit.edu 36 10 125511384 125511384 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198148 exon11 c.G1771A p.A591T . . . OAT 4942 broad.mit.edu 36 10 126079536 126079536 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001171814 exon8 c.A608G p.E203G . . . CAMK1D 57118 broad.mit.edu 36 10 12635261 12635261 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020397 exon2 c.G124T p.E42X . . . FAM175B 23172 broad.mit.edu 36 10 126485399 126485399 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032182 exon2 c.T82G p.L28V . . . MMP21 118856 broad.mit.edu 36 10 127445408 127445408 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147191 exon7 c.C1523T p.S508F . . . MMP21 118856 broad.mit.edu 36 10 127449039 127449039 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_147191 exon5 c.A1091G p.Y364C . . . DHX32 55760 broad.mit.edu 36 10 127519540 127519540 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018180 exon8 c.C1559T p.S520L . . . DHX32 55760 broad.mit.edu 36 10 127530936 127530936 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018180 exon6 c.G1267T p.E423X . . . DHX32 55760 broad.mit.edu 36 10 127545581 127545581 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018180 exon2 c.C444T p.F148F . . . FANK1 92565 broad.mit.edu 36 10 127667122 127667122 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145235 exon3 c.G204A p.T68T . . . ADAM12 8038 broad.mit.edu 36 10 127750088 127750088 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_021641 exon12 c.G1280A p.C427Y . . . C10orf90 118611 broad.mit.edu 36 10 128104564 128104564 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004298 exon8 c.G2047A p.E683K . . . C10orf90 118611 broad.mit.edu 36 10 128143262 128143262 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001004298 exon4 c.C1527T p.F509F . . . C10orf90 118611 broad.mit.edu 36 10 128143514 128143514 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004298 exon4 c.G1275T p.K425N . . . C10orf90 118611 broad.mit.edu 36 10 128183579 128183579 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004298 exon3 c.G180T p.E60D . . . DOCK1 1793 broad.mit.edu 36 10 128725993 128725993 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001380 exon19 c.A1870G p.K624E . . . DOCK1 1793 broad.mit.edu 36 10 128798575 128798575 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001380 exon25 c.G2527A p.E843K . . . FAM196A 642938 broad.mit.edu 36 10 128863603 128863603 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001039762 exon4 c.C1047T p.I349I . . . DOCK1 1793 broad.mit.edu 36 10 129132436 129132436 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001380 exon50 c.C5253T p.S1751S . . . FOXI2 399823 broad.mit.edu 36 10 129427074 129427074 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_207426 exon2 c.C812A p.S271Y . . . PTPRE 5791 broad.mit.edu 36 10 129759077 129759077 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130435 exon12 c.C1135T p.R379W . . . PTPRE 5791 broad.mit.edu 36 10 129771100 129771100 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130435 exon18 c.C1869T p.F623F . . . MKI67 4288 broad.mit.edu 36 10 129793076 129793076 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145966 exon12 c.A5938T p.I1980L . . . MKI67 4288 broad.mit.edu 36 10 129793367 129793367 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145966 exon12 c.C5647A p.L1883I . . . MKI67 4288 broad.mit.edu 36 10 129793461 129793461 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145966 exon12 c.G5553A p.T1851T . . . MKI67 4288 broad.mit.edu 36 10 129795967 129795967 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145966 exon12 c.C3047A p.S1016Y . . . MKI67 4288 broad.mit.edu 36 10 129796614 129796614 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145966 exon12 c.C2400A p.F800L . . . ADARB2 105 broad.mit.edu 36 10 1303259 1303259 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018702 exon4 c.C1083T p.F361F . . . CCDC3 83643 broad.mit.edu 36 10 13080446 13080446 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031455 exon2 c.G447T p.E149D . . . MGMT 4255 broad.mit.edu 36 10 131447509 131447509 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002412 exon4 c.G421T p.E141X . . . OPTN 10133 broad.mit.edu 36 10 13200946 13200946 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021980 exon6 c.G679A p.E227K . . . JAKMIP3 282973 broad.mit.edu 36 10 133780947 133780947 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001105521 exon2 c.C512T p.A171V . . . DPYSL4 10570 broad.mit.edu 36 10 133856158 133856158 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_006426 exon3 c.C135T p.I45I . . . C10orf93 255352 broad.mit.edu 36 10 134598282 134598282 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173572 exon8 c.A830G p.Y277C . . . KNDC1 85442 broad.mit.edu 36 10 134870435 134870435 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152643 exon19 c.G3567T p.K1189N . . . VENTX 27287 broad.mit.edu 36 10 134903447 134903447 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014468 exon3 c.C424T p.R142C . . . PAOX 196743 broad.mit.edu 36 10 135047506 135047506 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152911 exon4 c.G921A p.E307E . . . CYP2E1 1571 broad.mit.edu 36 10 135200571 135200571 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000773 exon7 c.G982T p.E328X . . . SYCE1 93426 broad.mit.edu 36 10 135223624 135223624 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001143764 exon2 c.A97G p.I33V . . . PRPF18 8559 broad.mit.edu 36 10 13682291 13682291 + Silent SNP G A A rs11540073 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003675 exon3 c.G186A p.S62S . . . FRMD4A 55691 broad.mit.edu 36 10 13742497 13742497 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018027 exon20 c.C1723T p.R575W . . . FRMD4A 55691 broad.mit.edu 36 10 13822238 13822238 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018027 exon11 c.T634A p.S212T . . . FAM107B 83641 broad.mit.edu 36 10 14603232 14603232 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031453 exon5 c.G884T p.R295I . . . HSPA14 51182 broad.mit.edu 36 10 14934402 14934402 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016299 exon8 c.A600G p.G200G . . . ITGA8 8516 broad.mit.edu 36 10 15686228 15686228 + Silent SNP G A A rs45604340 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003638 exon20 c.C2103T p.I701I . . . ITGA8 8516 broad.mit.edu 36 10 15689782 15689782 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003638 exon17 c.G1664A p.R555Q . . . FAM188A 80013 broad.mit.edu 36 10 15878110 15878110 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024948 exon11 c.C950T p.P317L . . . PTER 9317 broad.mit.edu 36 10 16566743 16566744 + Missense_Mutation DNP CG TA TA novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Capture Illumina NM_001001484 exon3 c.354_355TA . . . . CUBN 8029 broad.mit.edu 36 10 16951745 16951745 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001081 exon59 c.G9350A p.R3117H . . . CUBN 8029 broad.mit.edu 36 10 16986045 16986045 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001081 exon51 c.C7988A p.S2663Y . . . CUBN 8029 broad.mit.edu 36 10 17030524 17030524 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001081 exon35 c.G5168A p.S1723N . . . CUBN 8029 broad.mit.edu 36 10 17192971 17192971 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001081 exon9 c.A968G p.E323G . . . TRDMT1 1787 broad.mit.edu 36 10 17250886 17250886 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_004412 exon3 c.G211A p.D71N . . . ST8SIA6 338596 broad.mit.edu 36 10 17402957 17402957 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004470 exon8 c.G1123T p.E375X . . . STAM 8027 broad.mit.edu 36 10 17782206 17782206 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_003473 exon9 c.G834T p.E278D . . . NSUN6 221078 broad.mit.edu 36 10 18980110 18980110 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182543 exon1 c.G29A p.R10K . . . PLXDC2 84898 broad.mit.edu 36 10 20472306 20472306 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032812 exon5 c.C618T p.F206F . . . NEBL 10529 broad.mit.edu 36 10 21138795 21138795 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006393 exon25 c.G2557A p.D853N . . . NEBL 10529 broad.mit.edu 36 10 21179432 21179432 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006393 exon11 c.A1014C p.K338N . . . NEBL 10529 broad.mit.edu 36 10 21217034 21217034 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006393 exon4 c.G367T p.E123X . . . C10orf140 387640 broad.mit.edu 36 10 21844495 21844495 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207371 exon4 c.C2263A p.Q755K . . . MLLT10 8028 broad.mit.edu 36 10 21885669 21885669 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001195630 exon4 c.G332A p.R111Q . . . SPAG6 9576 broad.mit.edu 36 10 22716877 22716877 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012443 exon6 c.C798A p.Y266X . . . ARMC3 219681 broad.mit.edu 36 10 23290831 23290831 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173081 exon7 c.C550T p.R184X . . . ARMC3 219681 broad.mit.edu 36 10 23332200 23332200 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173081 exon13 c.G1582T p.E528X . . . MSRB2 22921 broad.mit.edu 36 10 23433128 23433128 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012228 exon2 c.G168T p.K56N . . . KIAA1217 56243 broad.mit.edu 36 10 24802479 24802479 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019590 exon6 c.G1163T p.R388I . . . ARHGAP21 57584 broad.mit.edu 36 10 24926899 24926899 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020824 exon15 c.G3178T p.E1060X . . . ARHGAP21 57584 broad.mit.edu 36 10 24929586 24929586 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020824 exon14 c.G3127A p.E1043K . . . ARHGAP21 57584 broad.mit.edu 36 10 24948910 24948910 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020824 exon9 c.G1920T p.Q640H . . . ARHGAP21 57584 broad.mit.edu 36 10 24949355 24949355 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020824 exon9 c.G1475T p.R492I . . . PRTFDC1 56952 broad.mit.edu 36 10 25266165 25266165 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020200 exon3 c.G293A p.R98Q . . . ENKUR 219670 broad.mit.edu 36 10 25319472 25319472 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145010 exon4 c.C520A p.R174S . . . THNSL1 79896 broad.mit.edu 36 10 25353620 25353620 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024838 exon3 c.C1462A p.L488I . . . GPR158 57512 broad.mit.edu 36 10 25901765 25901765 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020752 exon7 c.G1696A p.D566N . . . GPR158 57512 broad.mit.edu 36 10 25925623 25925623 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020752 exon10 c.G2044T p.A682S . . . GPR158 57512 broad.mit.edu 36 10 25926750 25926750 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020752 exon11 c.G2189T p.R730I . . . MYO3A 53904 broad.mit.edu 36 10 26355394 26355394 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017433 exon10 c.G880T p.D294Y . . . MYO3A 53904 broad.mit.edu 36 10 26397742 26397742 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017433 exon12 c.G1093T p.D365Y . . . MYO3A 53904 broad.mit.edu 36 10 26417277 26417277 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017433 exon15 c.C1499T p.A500V . . . MYO3A 53904 broad.mit.edu 36 10 26454419 26454419 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017433 exon19 c.C1990T p.R664X . . . MYO3A 53904 broad.mit.edu 36 10 26486401 26486401 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017433 exon26 c.C2950T p.R984X . . . MYO3A 53904 broad.mit.edu 36 10 26497742 26497742 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017433 exon28 c.C3207A p.F1069L . . . MYO3A 53904 broad.mit.edu 36 10 26505720 26505720 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017433 exon31 c.C4378A p.L1460M . . . GAD2 2572 broad.mit.edu 36 10 26609990 26609990 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134366 exon12 c.T1204C p.L402L . . . APBB1IP 54518 broad.mit.edu 36 10 26829776 26829776 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019043 exon5 c.C183T p.D61D . . . PDSS1 23590 broad.mit.edu 36 10 27049251 27049251 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014317 exon6 c.G566A p.R189Q . . . ABI1 10006 broad.mit.edu 36 10 27088117 27088117 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012751 exon8 c.C877T p.R293X . . . ANKRD26 22852 broad.mit.edu 36 10 27366136 27366136 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014915 exon23 c.G2682T p.K894N . . . ANKRD26 22852 broad.mit.edu 36 10 27366962 27366962 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014915 exon22 c.G2403T p.K801N . . . ANKRD26 22852 broad.mit.edu 36 10 27368961 27368961 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014915 exon21 c.G2314T p.E772X . . . YME1L1 10730 broad.mit.edu 36 10 27446555 27446555 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014263 exon15 c.A1675G p.I559V . . . MASTL 84930 broad.mit.edu 36 10 27499073 27499073 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172303 exon8 c.C1179A p.F393L . . . MASTL 84930 broad.mit.edu 36 10 27499713 27499713 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001172303 exon8 c.C1819T p.P607S . . . ZMYND11 10771 broad.mit.edu 36 10 276020 276020 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_212479 exon8 c.C719T p.A240V . . . ARMC4 55130 broad.mit.edu 36 10 28191428 28191428 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018076 exon18 c.A2740C p.N914H . . . MPP7 143098 broad.mit.edu 36 10 28388660 28388660 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173496 exon16 c.G1223T p.R408I . . . BAMBI 25805 broad.mit.edu 36 10 29010250 29010250 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012342 exon2 c.A134C p.K45T . . . BAMBI 25805 broad.mit.edu 36 10 29011082 29011082 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012342 exon3 c.C529T p.R177X . . . LYZL1 84569 broad.mit.edu 36 10 29621554 29621554 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032517 exon3 c.C378T p.F126F . . . SVIL 6840 broad.mit.edu 36 10 29787383 29787383 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003174 exon35 c.G5266A p.D1756N . . . SVIL 6840 broad.mit.edu 36 10 29802816 29802816 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003174 exon28 c.C4208T p.S1403L . . . SVIL 6840 broad.mit.edu 36 10 29822178 29822178 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003174 exon19 c.C2712T p.F904F . . . SVIL 6840 broad.mit.edu 36 10 29852601 29852601 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003174 exon13 c.G1670A p.R557K . . . SVIL 6840 broad.mit.edu 36 10 29852766 29852766 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003174 exon13 c.C1505T p.S502L . . . SVIL 6840 broad.mit.edu 36 10 29852957 29852957 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003174 exon13 c.G1314T p.Q438H . . . SVIL 6840 broad.mit.edu 36 10 29880033 29880033 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003174 exon8 c.A326C p.K109T . . . KIAA1462 57608 broad.mit.edu 36 10 30355057 30355057 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_020848 exon3 c.T4026G p.D1342E . . . KIAA1462 57608 broad.mit.edu 36 10 30356888 30356888 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020848 exon3 c.C2195T p.T732M . . . KIAA1462 57608 broad.mit.edu 36 10 30358509 30358509 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020848 exon3 c.C574A p.P192T . . . MTPAP 55149 broad.mit.edu 36 10 30651416 30651416 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018109 exon6 c.A1129C p.N377H . . . ZNF438 220929 broad.mit.edu 36 10 31177544 31177544 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143771 exon7 c.C1766T p.A589V . . . ARHGAP12 94134 broad.mit.edu 36 10 32146804 32146804 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018287 exon13 c.G1649T p.G550V . . . ARHGAP12 94134 broad.mit.edu 36 10 32149333 32149333 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018287 exon12 c.G1620T p.K540N . . . ARHGAP12 94134 broad.mit.edu 36 10 32172493 32172493 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018287 exon7 c.G1198T p.E400X . . . ARHGAP12 94134 broad.mit.edu 36 10 32190558 32190558 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018287 exon4 c.C719A p.S240Y . . . KIF5B 3799 broad.mit.edu 36 10 32347315 32347315 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004521 exon22 c.G2374T p.E792X . . . KIF5B 3799 broad.mit.edu 36 10 32350032 32350032 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004521 exon19 c.G2128A p.E710K . . . KIF5B 3799 broad.mit.edu 36 10 32351793 32351793 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004521 exon16 c.C1903T p.R635C . . . KIF5B 3799 broad.mit.edu 36 10 32363690 32363690 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004521 exon11 c.G1045T p.E349X . . . KIF5B 3799 broad.mit.edu 36 10 32364585 32364585 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004521 exon10 c.G833A p.R278Q . . . KIF5B 3799 broad.mit.edu 36 10 32366508 32366508 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004521 exon7 c.G532A p.E178K . . . C10orf68 79741 broad.mit.edu 36 10 33205305 33205305 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024688 exon22 c.C1865A p.S622Y . . . NRP1 8829 broad.mit.edu 36 10 33514644 33514644 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003873 exon15 c.C2349T p.G783G . . . PARD3 56288 broad.mit.edu 36 10 34660165 34660165 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184787 exon19 c.C2728T p.R910C . . . PARD3 56288 broad.mit.edu 36 10 34713124 34713124 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001184787 exon8 c.C955T p.R319C . . . CUL2 8453 broad.mit.edu 36 10 35367985 35367985 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198777 exon9 c.G746A p.R249Q . . . ANKRD30A 91074 broad.mit.edu 36 10 37459204 37459204 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052997 exon3 c.C234T p.L78L . . . ANKRD30A 91074 broad.mit.edu 36 10 37470694 37470694 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052997 exon7 c.C695T p.A232V . . . ANKRD30A 91074 broad.mit.edu 36 10 37471197 37471197 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_052997 exon7 c.G1198T p.E400X . . . ZNF248 57209 broad.mit.edu 36 10 38160586 38160586 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021045 exon6 c.G1703T p.R568I . . . ZNF248 57209 broad.mit.edu 36 10 38161947 38161947 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021045 exon6 c.A342C p.E114D . . . ZNF25 219749 broad.mit.edu 36 10 38281179 38281179 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145011 exon6 c.G1253A p.R418K . . . ZNF25 219749 broad.mit.edu 36 10 38281890 38281890 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145011 exon6 c.A542C p.K181T . . . ZNF37A 7587 broad.mit.edu 36 10 38447293 38447293 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007094 exon8 c.G1208T p.R403I . . . ZNF37A 7587 broad.mit.edu 36 10 38447477 38447477 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001007094 exon8 c.G1392T p.E464D . . . ZNF33B 7582 broad.mit.edu 36 10 42408078 42408078 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006955 exon5 c.C2326A p.P776T . . . ZNF33B 7582 broad.mit.edu 36 10 42409174 42409174 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006955 exon5 c.G1230T p.E410D . . . BMS1 9790 broad.mit.edu 36 10 42599906 42599906 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014753 exon2 c.A58C p.K20Q . . . BMS1 9790 broad.mit.edu 36 10 42612152 42612152 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014753 exon10 c.G1454A p.R485Q . . . BMS1 9790 broad.mit.edu 36 10 42638623 42638623 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014753 exon20 c.C3184T p.R1062X . . . RET 5979 broad.mit.edu 36 10 42930166 42930166 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020975 exon11 c.C2112A p.V704V . . . CSGALNACT2 55454 broad.mit.edu 36 10 42971257 42971257 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018590 exon2 c.C654T p.F218F . . . RASGEF1A 221002 broad.mit.edu 36 10 43011991 43011991 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145313 exon12 c.G1360A p.A454T . . . HNRNPF 3185 broad.mit.edu 36 10 43202993 43202993 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001098208 exon3 c.C346T p.R116X . . . ZNF239 8187 broad.mit.edu 36 10 43372385 43372385 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001099283 exon2 c.T1149G p.G383G . . . ZNF239 8187 broad.mit.edu 36 10 43373369 43373369 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099283 exon2 c.C165T p.F55F . . . ZNF32 7580 broad.mit.edu 36 10 43460141 43460141 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006973 exon3 c.C185T p.S62L . . . TMEM72 643236 broad.mit.edu 36 10 44743382 44743382 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001123376 exon2 c.C78T p.I26I . . . MARCH8 220972 broad.mit.edu 36 10 45273755 45273755 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002266 exon7 c.G814A p.D272N . . . ANUBL1 93550 broad.mit.edu 36 10 45441873 45441873 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128324 exon7 c.G1404T p.K468N . . . ANUBL1 93550 broad.mit.edu 36 10 45442409 45442409 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001128324 exon7 c.G868A p.E290K . . . PPYR1 5540 broad.mit.edu 36 10 46506874 46506874 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005972 exon3 c.A85G p.N29D . . . PPYR1 5540 broad.mit.edu 36 10 46507508 46507508 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005972 exon3 c.G719A p.R240H . . . FAM21B 55747 broad.mit.edu 36 10 47442321 47442321 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018232 exon17 c.C1554T p.S518S . . . RBP3 5949 broad.mit.edu 36 10 48008072 48008072 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_002900 exon1 c.C2812T p.P938S . . . GDF2 2658 broad.mit.edu 36 10 48033866 48033866 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016204 exon2 c.C1008T p.F336F . . . FRMPD2 143162 broad.mit.edu 36 10 49063625 49063625 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018071 exon18 c.A2336G p.K779R . . . MAPK8 5599 broad.mit.edu 36 10 49287982 49287982 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002750 exon3 c.G307T p.D103Y . . . MAPK8 5599 broad.mit.edu 36 10 49302634 49302634 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_139046 exon6 c.C688A p.H230N . . . MAPK8 5599 broad.mit.edu 36 10 49304516 49304516 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002750 exon8 c.A959G p.Y320C . . . C10orf72 196740 broad.mit.edu 36 10 49985823 49985823 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144984 exon2 c.C279T p.S93S . . . ERCC6 2074 broad.mit.edu 36 10 50336888 50336888 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000124 exon21 c.A4461G p.K1487K . . . ERCC6 2074 broad.mit.edu 36 10 50337139 50337139 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000124 exon21 c.C4210T p.R1404C . . . AKR1C2 1646 broad.mit.edu 36 10 5035953 5035953 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_205845 exon2 c.G75A p.A25A . . . PGBD3 267004 broad.mit.edu 36 10 50393693 50393693 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_170753 exon2 c.G1474A p.E492K . . . PGBD3 267004 broad.mit.edu 36 10 50394316 50394316 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_170753 exon2 c.A851C p.Q284P . . . ERCC6 2074 broad.mit.edu 36 10 50406564 50406564 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000124 exon4 c.A557G p.K186R . . . CHAT 1103 broad.mit.edu 36 10 50543021 50543021 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142929 exon15 c.C1816T p.L606L . . . OGDHL 55753 broad.mit.edu 36 10 50622746 50622746 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143996 exon12 c.A1517C p.K506T . . . OGDHL 55753 broad.mit.edu 36 10 50624900 50624900 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143996 exon9 c.G1027A p.A343T . . . NCOA4 8031 broad.mit.edu 36 10 51255592 51255592 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001145261 exon9 c.G1733A p.R578Q . . . AKR1C3 8644 broad.mit.edu 36 10 5126668 5126668 + Intron SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003739 exon1 c.A32C p.N11T . . . A1CF 29974 broad.mit.edu 36 10 52280445 52280445 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001198820 exon4 c.A109C p.T37P . . . PRKG1 5592 broad.mit.edu 36 10 52897601 52897601 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006258 exon3 c.G591T p.K197N . . . CSTF2T 23283 broad.mit.edu 36 10 53128691 53128691 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015235 exon1 c.T625C p.S209P . . . PRKG1 5592 broad.mit.edu 36 10 53563627 53563627 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006258 exon8 c.C957T p.N319N . . . PRKG1 5592 broad.mit.edu 36 10 53702237 53702237 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006258 exon12 c.C1393A p.L465I . . . PRKG1 5592 broad.mit.edu 36 10 53718740 53718740 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006258 exon16 c.A1876C p.K626Q . . . TUBAL3 79861 broad.mit.edu 36 10 5426009 5426009 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024803 exon4 c.G812T p.R271I . . . NET1 10276 broad.mit.edu 36 10 5486339 5486339 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005863 exon7 c.C718A p.L240I . . . NET1 10276 broad.mit.edu 36 10 5488571 5488571 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005863 exon10 c.C1243T p.R415C . . . Unknown 0 broad.mit.edu 36 10 55238828 55238828 + IGR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001142769 exon36 c.G5003T p.R1668I . . . PCDH15 65217 broad.mit.edu 36 10 55252858 55252858 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon31 c.G4514T p.R1505I . . . PCDH15 65217 broad.mit.edu 36 10 55253195 55253195 + Intron SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001142765 exon31 c.A4160G p.N1387S . . . PCDH15 65217 broad.mit.edu 36 10 55261107 55261107 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon29 c.C4065A p.I1355I . . . PCDH15 65217 broad.mit.edu 36 10 55270105 55270105 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon28 c.G3853T p.D1285Y . . . PCDH15 65217 broad.mit.edu 36 10 55368599 55368599 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon24 c.C3244A p.L1082I . . . PCDH15 65217 broad.mit.edu 36 10 55389542 55389542 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon22 c.C2967A p.V989V . . . PCDH15 65217 broad.mit.edu 36 10 55583048 55583048 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon13 c.C1491T p.V497V . . . PCDH15 65217 broad.mit.edu 36 10 55614901 55614901 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon11 c.C1328T p.S443L . . . PCDH15 65217 broad.mit.edu 36 10 55747180 55747180 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon7 c.C622T p.R208X . . . PCDH15 65217 broad.mit.edu 36 10 55776216 55776216 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142767 exon6 c.T509A p.F170Y . . . ZWINT 11130 broad.mit.edu 36 10 57789494 57789494 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007057 exon4 c.G383A p.R128Q . . . C10orf18 54906 broad.mit.edu 36 10 5812564 5812564 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017782 exon11 c.G596T p.R199I . . . C10orf18 54906 broad.mit.edu 36 10 5812892 5812892 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017782 exon11 c.A924C p.E308D . . . C10orf18 54906 broad.mit.edu 36 10 5829276 5829276 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017782 exon15 c.G3886T p.E1296X . . . C10orf18 54906 broad.mit.edu 36 10 5838650 5838650 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_017782 exon16 c.G6675T p.E2225D . . . ANKRD16 54522 broad.mit.edu 36 10 5962273 5962273 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009941 exon6 c.C922T p.R308X . . . BICC1 80114 broad.mit.edu 36 10 60216745 60216745 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080512 exon5 c.C444T p.I148I . . . BICC1 80114 broad.mit.edu 36 10 60219599 60219599 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080512 exon8 c.C947T p.A316V . . . FAM13C 220965 broad.mit.edu 36 10 60682581 60682581 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143773 exon13 c.T1267G p.L423V . . . FAM13C 220965 broad.mit.edu 36 10 60782044 60782044 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143773 exon4 c.G67A p.E23K . . . IL2RA 3559 broad.mit.edu 36 10 6103604 6103604 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000417 exon4 c.C426T p.F142F . . . SLC16A9 220963 broad.mit.edu 36 10 61084091 61084091 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194298 exon5 c.T699A p.S233R . . . SLC16A9 220963 broad.mit.edu 36 10 61114044 61114044 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194298 exon2 c.A12C p.K4N . . . ANK3 288 broad.mit.edu 36 10 61500434 61500434 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020987 exon37 c.C10211A p.S3404Y . . . ANK3 288 broad.mit.edu 36 10 61819267 61819267 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020987 exon1 c.G36T p.R12S . . . CDK1 983 broad.mit.edu 36 10 62223669 62223669 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001786 exon8 c.G824A p.R275Q . . . RTKN2 219790 broad.mit.edu 36 10 63634734 63634734 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145307 exon10 c.C1074T p.F358F . . . ZNF365 22891 broad.mit.edu 36 10 63806412 63806412 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_199451 exon2 c.G454T p.D152Y . . . ZNF365 22891 broad.mit.edu 36 10 63818209 63818209 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199451 exon3 c.G792A p.E264E . . . ZNF365 22891 broad.mit.edu 36 10 63829464 63829464 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014951 exon5 c.G1134T p.K378N . . . ZNF365 22891 broad.mit.edu 36 10 64084622 64084622 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_199452 exon3 c.G52A p.E18K . . . EGR2 1959 broad.mit.edu 36 10 64243890 64243890 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000399 exon2 c.C514T p.P172S . . . NRBF2 29982 broad.mit.edu 36 10 64563240 64563240 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_030759 exon1 c.G4A p.E2K . . . CTNNA3 29119 broad.mit.edu 36 10 67418516 67418516 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013266 exon16 c.G2205T p.A735A . . . LRRTM3 347731 broad.mit.edu 36 10 68357514 68357514 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178011 exon2 c.G834A p.P278P . . . SIRT1 23411 broad.mit.edu 36 10 69317194 69317194 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012238 exon2 c.C444T p.F148F . . . SIRT1 23411 broad.mit.edu 36 10 69336553 69336553 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142498 exon4 c.G58T p.E20X . . . HERC4 26091 broad.mit.edu 36 10 69365917 69365917 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022079 exon23 c.C2677T p.R893W . . . MYPN 84665 broad.mit.edu 36 10 69591497 69591497 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032578 exon8 c.C1465T p.R489X . . . MYPN 84665 broad.mit.edu 36 10 69604136 69604136 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032578 exon11 c.G2281T p.E761X . . . DNA2 1763 broad.mit.edu 36 10 69901663 69901663 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001080449 exon1 c.C223A p.L75I . . . SLC25A16 8034 broad.mit.edu 36 10 69913305 69913305 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152707 exon9 c.C889T p.R297X . . . TET1 80312 broad.mit.edu 36 10 70002937 70002937 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030625 exon2 c.C836A p.S279Y . . . TET1 80312 broad.mit.edu 36 10 70003390 70003390 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030625 exon2 c.C1289A p.P430H . . . TET1 80312 broad.mit.edu 36 10 70076727 70076727 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030625 exon4 c.C4235A p.S1412Y . . . CCAR1 55749 broad.mit.edu 36 10 70179025 70179025 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018237 exon9 c.G953A p.R318Q . . . STOX1 219736 broad.mit.edu 36 10 70314372 70314372 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152709 exon3 c.C814A p.L272I . . . DDX21 9188 broad.mit.edu 36 10 70389773 70389773 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004728 exon2 c.A293C p.K98T . . . DDX21 9188 broad.mit.edu 36 10 70408718 70408718 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004728 exon13 c.G2017T p.V673F . . . VPS26A 9559 broad.mit.edu 36 10 70562666 70562666 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001035260 exon2 c.C10A p.L4I . . . VPS26A 9559 broad.mit.edu 36 10 70586905 70586905 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001035260 exon4 c.C366T p.I122I . . . SUPV3L1 6832 broad.mit.edu 36 10 70632276 70632276 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003171 exon12 c.C1594T p.L532F . . . HKDC1 80201 broad.mit.edu 36 10 70687161 70687161 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025130 exon14 c.C2005T p.P669S . . . HKDC1 80201 broad.mit.edu 36 10 70691028 70691028 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025130 exon16 c.G2344A p.E782K . . . H2AFY2 55506 broad.mit.edu 36 10 71505422 71505422 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018649 exon2 c.T2C p.M1T . . . SAR1A 56681 broad.mit.edu 36 10 71582269 71582269 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020150 exon7 c.G566A p.G189D . . . EIF4EBP2 1979 broad.mit.edu 36 10 71849807 71849807 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004096 exon2 c.G277T p.V93L . . . ADAMTS14 140766 broad.mit.edu 36 10 72165051 72165051 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_080722 exon9 c.G1473T p.Q491H . . . SGPL1 8879 broad.mit.edu 36 10 72287378 72287378 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003901 exon6 c.C411T p.D137D . . . CDH23 64072 broad.mit.edu 36 10 72876118 72876118 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052836 exon3 c.C105A p.F35L . . . CDH23 64072 broad.mit.edu 36 10 72996606 72996606 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052836 exon7 c.C531A p.F177L . . . CDH23 64072 broad.mit.edu 36 10 73228964 73228964 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001171933 exon4 c.G425A p.R142Q . . . PSAP 5660 broad.mit.edu 36 10 73257802 73257802 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001042465 exon6 c.G695A p.R232H . . . DNAJB12 54788 broad.mit.edu 36 10 73770771 73770771 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001002762 exon4 c.C723A p.F241L . . . CCDC109A 90550 broad.mit.edu 36 10 74301340 74301340 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138357 exon6 c.G857A p.R286H . . . OIT3 170392 broad.mit.edu 36 10 74328802 74328802 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152635 exon2 c.C436T p.H146Y . . . OIT3 170392 broad.mit.edu 36 10 74354110 74354110 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152635 exon7 c.G1069A p.E357K . . . SFMBT2 57713 broad.mit.edu 36 10 7463843 7463843 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001029880 exon2 c.C24A p.S8S . . . DNAJC9 23234 broad.mit.edu 36 10 74673272 74673272 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015190 exon5 c.G675T p.K225N . . . TTC18 118491 broad.mit.edu 36 10 74707116 74707116 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145170 exon22 c.A2618C p.K873T . . . TTC18 118491 broad.mit.edu 36 10 74752777 74752777 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145170 exon10 c.C1072T p.R358W . . . ZMYND17 118490 broad.mit.edu 36 10 74854454 74854454 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001024593 exon7 c.T1246C p.S416P . . . PPP3CB 5532 broad.mit.edu 36 10 74876295 74876295 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142353 exon11 c.G1232A p.R411Q . . . USP54 159195 broad.mit.edu 36 10 74947241 74947241 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152586 exon18 c.G2949T p.K983N . . . USP54 159195 broad.mit.edu 36 10 74959670 74959670 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152586 exon13 c.G1834T p.E612X . . . SEC24C 9632 broad.mit.edu 36 10 75199205 75199205 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198597 exon18 c.G2519A p.R840Q . . . FUT11 170384 broad.mit.edu 36 10 75203263 75203263 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173540 exon2 c.C1018A p.L340M . . . KIAA0913 23053 broad.mit.edu 36 10 75220030 75220030 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015037 exon7 c.C915A p.F305L . . . PLAU 5328 broad.mit.edu 36 10 75343389 75343389 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002658 exon7 c.G547T p.E183X . . . VCL 7414 broad.mit.edu 36 10 75547878 75547878 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014000 exon22 c.G3350A p.R1117Q . . . ADK 132 broad.mit.edu 36 10 75744461 75744461 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001123 exon4 c.C174T p.V58V . . . MYST4 23522 broad.mit.edu 36 10 76402388 76402388 + Nonsense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012330 exon7 c.T1046G p.L349X . . . MYST4 23522 broad.mit.edu 36 10 76414873 76414873 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012330 exon12 c.C2403G p.C801W . . . ITIH5 80760 broad.mit.edu 36 10 7651714 7651714 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030569 exon12 c.G2072T p.S691I . . . DUSP13 51207 broad.mit.edu 36 10 76524638 76524638 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016364 exon4 c.C399T p.R133R . . . ITIH5 80760 broad.mit.edu 36 10 7697995 7697995 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030569 exon7 c.G895A p.V299M . . . C10orf11 83938 broad.mit.edu 36 10 77476949 77476949 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032024 exon3 c.C196A p.L66M . . . ITIH2 3698 broad.mit.edu 36 10 7802896 7802896 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002216 exon7 c.C702T p.F234F . . . ITIH2 3698 broad.mit.edu 36 10 7813906 7813906 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002216 exon13 c.G1588A p.A530T . . . ITIH2 3698 broad.mit.edu 36 10 7816920 7816920 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002216 exon15 c.G1817T p.R606I . . . KCNMA1 3778 broad.mit.edu 36 10 78614631 78614631 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161353 exon4 c.G652A p.D218N . . . ATP5C1 509 broad.mit.edu 36 10 7878109 7878109 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001973 exon2 c.G76A p.A26T . . . ATP5C1 509 broad.mit.edu 36 10 7881775 7881775 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001001973 exon5 c.G463T p.E155X . . . DLG5 9231 broad.mit.edu 36 10 79241803 79241803 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_004747 exon22 c.C4207T p.R1403W . . . POLR3A 11128 broad.mit.edu 36 10 79414974 79414974 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007055 exon24 c.C3202A p.P1068T . . . POLR3A 11128 broad.mit.edu 36 10 79415923 79415923 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007055 exon22 c.G2902A p.E968K . . . POLR3A 11128 broad.mit.edu 36 10 79434639 79434639 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007055 exon16 c.C2088A p.F696L . . . POLR3A 11128 broad.mit.edu 36 10 79455519 79455519 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007055 exon3 c.C185T p.T62M . . . TAF3 83860 broad.mit.edu 36 10 8046610 8046610 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031923 exon3 c.G1131A p.P377P . . . ZMIZ1 57178 broad.mit.edu 36 10 80720786 80720786 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020338 exon10 c.C605T p.S202L . . . GATA3 2625 broad.mit.edu 36 10 8155908 8155908 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002051 exon6 c.G1248A p.L416L . . . C10orf58 84293 broad.mit.edu 36 10 82181749 82181749 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032333 exon6 c.G604T p.E202X . . . SH2D4B 387694 broad.mit.edu 36 10 82353322 82353322 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_207372 exon5 c.G651A p.R217R . . . SH2D4B 387694 broad.mit.edu 36 10 82393734 82393734 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207372 exon7 c.A991C p.N331H . . . NRG3 10718 broad.mit.edu 36 10 83625899 83625899 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001010848 exon1 c.C823T p.H275Y . . . TUBB8 347688 broad.mit.edu 36 10 84559 84559 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164154 exon3 c.C57A p.I19I . . . NRG3 10718 broad.mit.edu 36 10 84735101 84735101 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001165973 exon11 c.C1260A p.S420R . . . LARP4B 23185 broad.mit.edu 36 10 850951 850951 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015155 exon15 c.G1755A p.S585S . . . LARP4B 23185 broad.mit.edu 36 10 853670 853670 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015155 exon14 c.G1690T p.E564X . . . GHITM 27069 broad.mit.edu 36 10 85893832 85893832 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014394 exon4 c.G331T p.E111X . . . LRIT2 340745 broad.mit.edu 36 10 85974189 85974189 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017924 exon2 c.C772T p.P258S . . . LRIT1 26103 broad.mit.edu 36 10 85982286 85982286 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015613 exon4 c.G1249T p.E417X . . . FAM190B 54462 broad.mit.edu 36 10 86121768 86121768 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018999 exon2 c.G980A p.R327Q . . . LARP4B 23185 broad.mit.edu 36 10 865487 865487 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015155 exon10 c.G963T p.K321N . . . GRID1 2894 broad.mit.edu 36 10 87369681 87369681 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017551 exon14 c.C2283T p.I761I . . . GRID1 2894 broad.mit.edu 36 10 87472845 87472845 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017551 exon12 c.G1892A p.R631H . . . WAPAL 23063 broad.mit.edu 36 10 88217195 88217195 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015045 exon9 c.C2191T p.R731C . . . WAPAL 23063 broad.mit.edu 36 10 88250078 88250078 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015045 exon3 c.A902C p.K301T . . . OPN4 94233 broad.mit.edu 36 10 88409141 88409141 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001030015 exon6 c.C769T p.L257F . . . AGAP11 119385 broad.mit.edu 36 10 88758112 88758112 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133447 exon12 c.G123A p.T41T . . . AGAP11 119385 broad.mit.edu 36 10 88758666 88758666 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133447 exon12 c.G677T p.S226I . . . AGAP11 119385 broad.mit.edu 36 10 88758806 88758806 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133447 exon12 c.G817T p.E273X . . . AGAP11 119385 broad.mit.edu 36 10 88758952 88758952 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133447 exon12 c.G963T p.Q321H . . . FAM35A 54537 broad.mit.edu 36 10 88901866 88901866 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019054 exon3 c.G775T p.D259Y . . . MINPP1 9562 broad.mit.edu 36 10 89301998 89301998 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178118 exon5 c.T644G p.I215R . . . PAPSS2 9060 broad.mit.edu 36 10 89462814 89462814 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001015880 exon3 c.C148A p.L50I . . . PAPSS2 9060 broad.mit.edu 36 10 89491085 89491085 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001015880 exon10 c.G1200T p.Q400H . . . ATAD1 84896 broad.mit.edu 36 10 89504484 89504484 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032810 exon10 c.G1026T p.K342N . . . ATAD1 84896 broad.mit.edu 36 10 89540116 89540116 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032810 exon4 c.G313T p.D105Y . . . PTEN 5728 broad.mit.edu 36 10 89682885 89682885 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000314 exon5 c.G389A p.R130Q PTEN,central_nervous_system,brain,Substitution - Nonsense,+1 . . PTEN 5728 broad.mit.edu 36 10 89701856 89701856 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000314 exon6 c.G494A p.G165E PTEN,central_nervous_system,brain,Substitution - Missense,0 . . LIPJ 142910 broad.mit.edu 36 10 90355380 90355380 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010939 exon10 c.C806A p.S269Y . . . LIPJ 142910 broad.mit.edu 36 10 90356551 90356551 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010939 exon11 c.T1008G p.I336M . . . LIPF 8513 broad.mit.edu 36 10 90418397 90418397 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004190 exon4 c.C326T p.A109V . . . LIPK 643414 broad.mit.edu 36 10 90480784 90480784 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001080518 exon3 c.C288T p.N96N . . . STAMBPL1 57559 broad.mit.edu 36 10 90666426 90666426 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020799 exon8 c.G913T p.E305X . . . ACTA2 59 broad.mit.edu 36 10 90690976 90690976 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001141945 exon6 c.C606T p.F202F . . . IFIT2 3433 broad.mit.edu 36 10 91051863 91051863 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001547 exon1 c.G3T p.M1I . . . IFIT2 3433 broad.mit.edu 36 10 91056203 91056203 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001547 exon2 c.G510T p.K170N . . . IFIT2 3433 broad.mit.edu 36 10 91056517 91056517 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001547 exon2 c.A824G p.E275G . . . IFIT2 3433 broad.mit.edu 36 10 91056622 91056622 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001547 exon2 c.G929T p.R310I . . . IFIT3 3437 broad.mit.edu 36 10 91089026 91089026 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001549 exon2 c.C634A p.L212I . . . IFIT1B 439996 broad.mit.edu 36 10 91133288 91133288 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001010987 exon2 c.G238A p.D80N . . . IFIT1 3434 broad.mit.edu 36 10 91153095 91153095 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001548 exon2 c.G1083T p.E361D . . . IFIT5 24138 broad.mit.edu 36 10 91167018 91167018 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012420 exon2 c.G82T p.D28Y . . . SLC16A12 387700 broad.mit.edu 36 10 91182874 91182874 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_213606 exon8 c.C1478A p.S493Y . . . SLC16A12 387700 broad.mit.edu 36 10 91183007 91183007 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_213606 exon8 c.T1345C p.S449P . . . KIF20B 9585 broad.mit.edu 36 10 91458916 91458916 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016195 exon3 c.G160A p.E54K . . . KIF20B 9585 broad.mit.edu 36 10 91487549 91487549 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016195 exon20 c.G2851A p.E951K . . . KIF20B 9585 broad.mit.edu 36 10 91487954 91487954 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016195 exon20 c.G3256T p.E1086X . . . KIF20B 9585 broad.mit.edu 36 10 91488257 91488257 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016195 exon20 c.G3559T p.E1187X . . . HTR7 3363 broad.mit.edu 36 10 92493423 92493423 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019859 exon3 c.G1300A p.A434T . . . HTR7 3363 broad.mit.edu 36 10 92498812 92498812 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_019859 exon2 c.C1059A p.I353I . . . ANKRD1 27063 broad.mit.edu 36 10 92667511 92667511 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014391 exon5 c.G510T p.E170D . . . HECTD2 143279 broad.mit.edu 36 10 93234297 93234297 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182765 exon9 c.C875T p.S292F . . . PPP1R3C 5507 broad.mit.edu 36 10 93380238 93380238 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005398 exon2 c.A380T p.K127I . . . TNKS2 80351 broad.mit.edu 36 10 93578076 93578076 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_025235 exon9 c.G1037A p.R346Q . . . BTAF1 9044 broad.mit.edu 36 10 93709816 93709816 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003972 exon11 c.A1188C p.K396N . . . BTAF1 9044 broad.mit.edu 36 10 93733940 93733940 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003972 exon19 c.G2226T p.E742D . . . BTAF1 9044 broad.mit.edu 36 10 93743569 93743569 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003972 exon22 c.G3184A p.D1062N . . . BTAF1 9044 broad.mit.edu 36 10 93776914 93776914 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003972 exon37 c.A5283G p.E1761E . . . IDE 3416 broad.mit.edu 36 10 94284449 94284449 + Missense_Mutation SNP C A A rs61078556 unknown TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004969 exon3 c.G357T p.K119N . . . IDE 3416 broad.mit.edu 36 10 94287193 94287193 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004969 exon2 c.C193T p.R65X . . . KIF11 3832 broad.mit.edu 36 10 94358799 94358799 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_004523 exon5 c.T430A p.F144I . . . HHEX 3087 broad.mit.edu 36 10 94444484 94444484 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002729 exon4 c.A792C p.K264N . . . CYP26A1 1592 broad.mit.edu 36 10 94827048 94827048 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_057157 exon7 c.C1284A p.I428I . . . MYOF 26509 broad.mit.edu 36 10 95085708 95085708 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_133337 exon40 c.C4484T p.S1495L . . . MYOF 26509 broad.mit.edu 36 10 95109664 95109664 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133337 exon28 c.G2997T p.E999D . . . CEP55 55165 broad.mit.edu 36 10 95252892 95252892 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018131 exon3 c.G216T p.K72N . . . CEP55 55165 broad.mit.edu 36 10 95269467 95269467 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018131 exon8 c.C1104T p.L368L . . . PDE6C 5146 broad.mit.edu 36 10 95389856 95389856 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006204 exon12 c.G1522A p.E508K . . . PDE6C 5146 broad.mit.edu 36 10 95389942 95389942 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006204 exon12 c.G1608T p.E536D . . . FRA10AC1 118924 broad.mit.edu 36 10 95441822 95441822 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145246 exon7 c.G399T p.K133N . . . FRA10AC1 118924 broad.mit.edu 36 10 95442427 95442427 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_145246 exon6 c.C346A p.L116I . . . LGI1 9211 broad.mit.edu 36 10 95547474 95547474 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005097 exon8 c.G1598A p.R533H . . . PLCE1 51196 broad.mit.edu 36 10 96054303 96054303 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001165979 exon24 c.C4609A p.L1537M . . . PLCE1 51196 broad.mit.edu 36 10 96054385 96054385 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001165979 exon24 c.C4691A p.S1564Y . . . NOC3L 64318 broad.mit.edu 36 10 96099964 96099964 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022451 exon9 c.G1024A p.A342T . . . NOC3L 64318 broad.mit.edu 36 10 96102655 96102655 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022451 exon7 c.A846C p.E282D . . . NOC3L 64318 broad.mit.edu 36 10 96102789 96102789 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022451 exon7 c.G712T p.E238X . . . NOC3L 64318 broad.mit.edu 36 10 96104779 96104779 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022451 exon6 c.G627T p.K209N . . . NOC3L 64318 broad.mit.edu 36 10 96107861 96107861 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022451 exon3 c.G319T p.V107L . . . HELLS 3070 broad.mit.edu 36 10 96326539 96326539 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018063 exon10 c.G1019A p.R340Q . . . CYP2C18 1562 broad.mit.edu 36 10 96456559 96456559 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000772 exon5 c.A671G p.D224G . . . CYP2C9 1559 broad.mit.edu 36 10 96697598 96697598 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000771 exon4 c.A554C p.K185T . . . CYP2C9 1559 broad.mit.edu 36 10 96738599 96738599 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000771 exon9 c.C1297T p.R433W . . . CYP2C9 1559 broad.mit.edu 36 10 96738664 96738664 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000771 exon9 c.G1362T p.Q454H . . . CYP2C8 1558 broad.mit.edu 36 10 96808108 96808108 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000770 exon5 c.G793A p.D265N . . . CYP2C8 1558 broad.mit.edu 36 10 96814632 96814632 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000770 exon4 c.G557A p.R186Q . . . PDLIM1 9124 broad.mit.edu 36 10 96997017 96997017 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020992 exon5 c.G630A p.P210P . . . SORBS1 10580 broad.mit.edu 36 10 97101101 97101101 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001034957 exon15 c.G1355A p.R452Q . . . SORBS1 10580 broad.mit.edu 36 10 97104651 97104651 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001034957 exon14 c.G1310A p.R437Q . . . SORBS1 10580 broad.mit.edu 36 10 97125800 97125800 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001034954 exon17 c.C1657T p.R553W . . . TCTN3 26123 broad.mit.edu 36 10 97413928 97413928 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001143973 exon10 c.C1266A p.F422L . . . CC2D2B 387707 broad.mit.edu 36 10 97781703 97781703 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001001732 exon9 c.A917G p.N306S . . . CCNJ 54619 broad.mit.edu 36 10 97800164 97800164 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019084 exon3 c.C231T p.I77I . . . ZNF518A 9849 broad.mit.edu 36 10 97910122 97910122 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014803 exon6 c.C4053A p.I1351I . . . OPALIN 93377 broad.mit.edu 36 10 98105010 98105010 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033207 exon2 c.G31A p.A11T . . . TLL2 7093 broad.mit.edu 36 10 98123390 98123390 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012465 exon19 c.C2615T p.S872L . . . TLL2 7093 broad.mit.edu 36 10 98126523 98126523 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012465 exon18 c.G2364A p.A788A . . . PIK3AP1 118788 broad.mit.edu 36 10 98406620 98406620 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152309 exon3 c.G492A p.S164S . . . SLIT1 6585 broad.mit.edu 36 10 98780571 98780571 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003061 exon25 c.C2515A p.L839I . . . SLIT1 6585 broad.mit.edu 36 10 98796499 98796499 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003061 exon18 c.C1755T p.F585F . . . ARHGAP19 84986 broad.mit.edu 36 10 99013331 99013331 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032900 exon4 c.G449A p.R150Q . . . GOLGA7B 401647 broad.mit.edu 36 10 99609230 99609230 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001010917 exon2 c.G38A p.R13Q . . . CRTAC1 55118 broad.mit.edu 36 10 99630049 99630049 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018058 exon14 c.A1766G p.N589S . . . CRTAC1 55118 broad.mit.edu 36 10 99630111 99630111 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018058 exon14 c.C1704T p.F568F . . . C10orf28 27291 broad.mit.edu 36 10 99957923 99957923 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014472 exon4 c.T62C p.V21A . . . ERAP1 51752 broad.mit.edu 36 5 96145416 96145417 + Frame_Shift_Del DEL TT - - novel TCGA-AG-A002-01 TCGA-AG-A002-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001040458 exon14 c.2067_2068del p.689_690del . . . SLCO4C1 353189 broad.mit.edu 36 5 101659835 101659835 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_180991 exon1 c.G31A p.A11T . . . PAM 5066 broad.mit.edu 36 5 102371247 102371247 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138822 exon19 c.T2202G p.I734M . . . GIN1 54826 broad.mit.edu 36 5 102460330 102460330 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017676 exon7 c.G1108A p.V370I . . . GIN1 54826 broad.mit.edu 36 5 102470450 102470450 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_017676 exon3 c.G202T p.E68X . . . PPIP5K2 23262 broad.mit.edu 36 5 102530899 102530899 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015216 exon17 c.C2038T p.R680X . . . FAM173B 134145 broad.mit.edu 36 5 10280742 10280742 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199133 exon5 c.G513T p.K171N . . . FAM173B 134145 broad.mit.edu 36 5 10292294 10292294 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_199133 exon2 c.G191A p.R64Q . . . CCT5 22948 broad.mit.edu 36 5 10315652 10315652 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012073 exon9 c.C1239T p.I413I . . . MARCH6 10299 broad.mit.edu 36 5 10443608 10443608 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005885 exon6 c.A572G p.N191S . . . MARCH6 10299 broad.mit.edu 36 5 10486737 10486737 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005885 exon26 c.G2674A p.E892K . . . EFNA5 1946 broad.mit.edu 36 5 106750883 106750883 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001962 exon4 c.C517T p.R173C . . . EFNA5 1946 broad.mit.edu 36 5 106790861 106790861 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001962 exon2 c.C374T p.S125F . . . EFNA5 1946 broad.mit.edu 36 5 106790964 106790964 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001962 exon2 c.G271A p.D91N . . . FBXL17 64839 broad.mit.edu 36 5 107549760 107549760 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001163315 exon6 c.C1702A p.L568I . . . DAP 1611 broad.mit.edu 36 5 10801365 10801365 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004394 exon2 c.G74A p.R25Q . . . FER 2241 broad.mit.edu 36 5 108196495 108196495 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005246 exon4 c.G333T p.K111N . . . FER 2241 broad.mit.edu 36 5 108247074 108247074 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005246 exon9 c.G1002T p.E334D . . . FER 2241 broad.mit.edu 36 5 108410752 108410752 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005246 exon16 c.T1878C p.V626V . . . MAN2A1 4124 broad.mit.edu 36 5 109183461 109183461 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002372 exon14 c.C2302T p.R768W . . . MAN2A1 4124 broad.mit.edu 36 5 109183916 109183916 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002372 exon15 c.C2425A p.L809I . . . SLC25A46 91137 broad.mit.edu 36 5 110119081 110119081 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138773 exon6 c.G581T p.W194L . . . SLC25A46 91137 broad.mit.edu 36 5 110125344 110125344 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138773 exon8 c.A1220C p.K407T . . . CAMK4 814 broad.mit.edu 36 5 110738489 110738489 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001744 exon3 c.C283T p.R95C . . . STARD4 134429 broad.mit.edu 36 5 110865678 110865678 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139164 exon4 c.G163T p.A55S . . . EPB41L4A 64097 broad.mit.edu 36 5 111547612 111547612 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022140 exon18 c.C1622T p.S541L . . . EPB41L4A 64097 broad.mit.edu 36 5 111558168 111558168 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_022140 exon17 c.A1498C p.N500H . . . EPB41L4A 64097 broad.mit.edu 36 5 111628532 111628532 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022140 exon6 c.G514T p.E172X . . . APC 324 broad.mit.edu 36 5 112130970 112130970 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127511 exon3 c.G436A p.E146K . . . APC 324 broad.mit.edu 36 5 112201511 112201511 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127511 exon14 c.A2267G p.D756G . . . APC 324 broad.mit.edu 36 5 112203389 112203389 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127511 exon14 c.C4145T p.S1382L APC,large_intestine,colon,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112203538 112203538 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127511 exon14 c.C4294T p.R1432X APC,large_intestine,rectum,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112203796 112203796 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127511 exon14 c.G4552T p.E1518X APC,large_intestine,right,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112207472 112207472 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127511 exon14 c.C8228T p.P2743L . . . MCC 4163 broad.mit.edu 36 5 112392556 112392556 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001085377 exon18 c.C2853T p.F951F . . . TSSK1B 83942 broad.mit.edu 36 5 112798411 112798411 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032028 exon1 c.C25T p.R9X . . . YTHDC2 64848 broad.mit.edu 36 5 112890259 112890259 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022828 exon4 c.G553A p.E185K . . . YTHDC2 64848 broad.mit.edu 36 5 112956944 112956944 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022828 exon29 c.C4258T p.R1420C . . . KCNN2 3781 broad.mit.edu 36 5 113859547 113859547 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021614 exon8 c.C1509T p.F503F . . . PGGT1B 5229 broad.mit.edu 36 5 114585551 114585551 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005023 exon7 c.G712T p.E238X . . . CTNND2 1501 broad.mit.edu 36 5 11464651 11464651 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001332 exon5 c.G436T p.E146X . . . CTNND2 1501 broad.mit.edu 36 5 11465150 11465150 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001332 exon4 c.C319T p.Q107X . . . SLC12A7 10723 broad.mit.edu 36 5 1147320 1147320 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006598 exon2 c.C168T p.V56V . . . AP3S1 1176 broad.mit.edu 36 5 115230321 115230321 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001284 exon2 c.G125T p.R42I . . . AQPEP 206338 broad.mit.edu 36 5 115363363 115363363 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173800 exon7 c.G1380T p.E460D . . . COMMD10 51397 broad.mit.edu 36 5 115456219 115456219 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016144 exon4 c.G322T p.A108S . . . DMXL1 1657 broad.mit.edu 36 5 118497104 118497104 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005509 exon12 c.G1586T p.R529I . . . DMXL1 1657 broad.mit.edu 36 5 118497556 118497556 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005509 exon12 c.G2038T p.E680X . . . DMXL1 1657 broad.mit.edu 36 5 118513074 118513074 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005509 exon18 c.C3653A p.S1218Y . . . DMXL1 1657 broad.mit.edu 36 5 118513182 118513182 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005509 exon18 c.C3761T p.S1254L . . . PRR16 51334 broad.mit.edu 36 5 120049741 120049741 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016644 exon3 c.G284A p.R95K . . . SRFBP1 153443 broad.mit.edu 36 5 121383884 121383884 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152546 exon6 c.G555T p.K185N . . . SRFBP1 153443 broad.mit.edu 36 5 121384387 121384387 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_152546 exon6 c.G1058T p.S353I . . . SRFBP1 153443 broad.mit.edu 36 5 121390658 121390658 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152546 exon8 c.C1228T p.R410X . . . ZNF474 133923 broad.mit.edu 36 5 121515709 121515709 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_207317 exon2 c.C125T p.S42F . . . SNCAIP 9627 broad.mit.edu 36 5 121795648 121795648 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005460 exon6 c.T1268G p.L423R . . . SNCAIP 9627 broad.mit.edu 36 5 121804313 121804313 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005460 exon7 c.G1387A p.V463I . . . SNX2 6643 broad.mit.edu 36 5 122191188 122191188 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003100 exon14 c.T1457G p.F486C . . . CEP120 153241 broad.mit.edu 36 5 122741985 122741985 + Nonsense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166226 exon15 c.A2062T p.K688X . . . CSNK1G3 1456 broad.mit.edu 36 5 122939381 122939381 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001044723 exon6 c.G498T p.E166D . . . ZNF608 57507 broad.mit.edu 36 5 124064732 124064732 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020747 exon2 c.C1036T p.R346W . . . ZNF608 57507 broad.mit.edu 36 5 124064826 124064826 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020747 exon2 c.G942A p.P314P . . . ALDH7A1 501 broad.mit.edu 36 5 125909921 125909921 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001182 exon17 c.C1559T p.S520F . . . LMNB1 4001 broad.mit.edu 36 5 126182583 126182583 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005573 exon6 c.G1010A p.R337H . . . SLC12A2 6558 broad.mit.edu 36 5 127476499 127476499 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001046 exon2 c.A851C p.K284T . . . SLC12A2 6558 broad.mit.edu 36 5 127497796 127497796 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001046 exon6 c.G1229A p.R410Q . . . FBN2 2201 broad.mit.edu 36 5 127664460 127664460 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001999 exon48 c.C6114A p.S2038S . . . FBN2 2201 broad.mit.edu 36 5 127668671 127668671 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001999 exon45 c.C5677T p.R1893C . . . FBN2 2201 broad.mit.edu 36 5 127696591 127696591 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001999 exon32 c.C4134T p.C1378C . . . FBN2 2201 broad.mit.edu 36 5 127702566 127702566 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001999 exon26 c.G3430A p.E1144K . . . FBN2 2201 broad.mit.edu 36 5 127882915 127882915 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001999 exon5 c.C578A p.P193H . . . SLC27A6 28965 broad.mit.edu 36 5 128330013 128330013 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017372 exon1 c.T284C p.V95A . . . SLC27A6 28965 broad.mit.edu 36 5 128396866 128396866 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017372 exon10 c.A1852C p.K618Q . . . ADAMTS19 171019 broad.mit.edu 36 5 128984346 128984346 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_133638 exon9 c.C1597T p.L533F . . . ADAMTS19 171019 broad.mit.edu 36 5 128985840 128985840 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133638 exon10 c.C1652A p.S551Y . . . ADAMTS19 171019 broad.mit.edu 36 5 129058416 129058416 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133638 exon19 c.C2905T p.R969X . . . CDC42SE2 56990 broad.mit.edu 36 5 130754635 130754635 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001038702 exon4 c.A207C p.G69G . . . RAPGEF6 51735 broad.mit.edu 36 5 130794660 130794660 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164387 exon28 c.G4295T p.R1432I . . . RAPGEF6 51735 broad.mit.edu 36 5 130816704 130816704 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164387 exon22 c.C3157T p.R1053C . . . FNIP1 96459 broad.mit.edu 36 5 131036298 131036298 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133372 exon14 c.G1738A p.E580K . . . ACSL6 23305 broad.mit.edu 36 5 131333732 131333732 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001009185 exon15 c.G1495T p.D499Y . . . SLC22A5 6584 broad.mit.edu 36 5 131756196 131756196 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003060 exon8 c.C1440T p.F480F . . . RAD50 10111 broad.mit.edu 36 5 131920976 131920976 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005732 exon1 c.G61T p.D21Y . . . RAD50 10111 broad.mit.edu 36 5 131943027 131943027 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005732 exon4 c.C485A p.S162Y . . . RAD50 10111 broad.mit.edu 36 5 131943478 131943478 + Missense_Mutation SNP C T T rs28903087 by-cluster TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005732 exon5 c.C577T p.R193W . . . RAD50 10111 broad.mit.edu 36 5 131953413 131953413 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005732 exon9 c.G1437T p.Q479H . . . KIF3A 11127 broad.mit.edu 36 5 132066560 132066560 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007054 exon11 c.G1482T p.E494D . . . SHROOM1 134549 broad.mit.edu 36 5 132188918 132188918 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133456 exon1 c.G814A p.E272K . . . AFF4 27125 broad.mit.edu 36 5 132259917 132259917 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A T A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014423 exon11 c.T2304A p.H768Q . . . AFF4 27125 broad.mit.edu 36 5 132260736 132260736 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014423 exon11 c.C1485T p.N495N . . . AFF4 27125 broad.mit.edu 36 5 132266066 132266066 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014423 exon7 c.C1100A p.P367H . . . HSPA4 3308 broad.mit.edu 36 5 132440403 132440403 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002154 exon7 c.G822T p.K274N . . . HSPA4 3308 broad.mit.edu 36 5 132452076 132452076 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002154 exon9 c.A1067C p.K356T . . . HSPA4 3308 broad.mit.edu 36 5 132467558 132467558 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002154 exon18 c.A2260G p.K754E . . . TCF7 6932 broad.mit.edu 36 5 133501697 133501697 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003202 exon4 c.G490A p.E164K . . . TCF7 6932 broad.mit.edu 36 5 133506365 133506365 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003202 exon7 c.G810T p.K270N . . . CDKL3 51265 broad.mit.edu 36 5 133668078 133668078 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001113575 exon11 c.A1538G p.N513S . . . PHF15 23338 broad.mit.edu 36 5 133901585 133901585 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015288 exon3 c.G66A p.A22A . . . SEC24A 10802 broad.mit.edu 36 5 134081661 134081661 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_021982 exon20 c.G2869A p.A957T . . . DDX46 9879 broad.mit.edu 36 5 134145530 134145530 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014829 exon8 c.A900C p.E300D . . . DDX46 9879 broad.mit.edu 36 5 134175305 134175305 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014829 exon18 c.G2307T p.K769N . . . DDX46 9879 broad.mit.edu 36 5 134182551 134182551 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014829 exon21 c.G2932T p.E978X . . . TXNDC15 79770 broad.mit.edu 36 5 134263219 134263219 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024715 exon5 c.G1028A p.R343Q . . . H2AFY 9555 broad.mit.edu 36 5 134714424 134714424 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138609 exon6 c.G667A p.G223S . . . H2AFY 9555 broad.mit.edu 36 5 134752584 134752584 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004893 exon2 c.G99T p.K33N . . . CXCL14 9547 broad.mit.edu 36 5 134935450 134935450 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004887 exon4 c.G328A p.E110K . . . SLC25A48 153328 broad.mit.edu 36 5 135216403 135216403 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_145282 exon4 c.C415T p.R139W . . . IL9 3578 broad.mit.edu 36 5 135256062 135256062 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000590 exon5 c.G352A p.A118T . . . FBXL21 26223 broad.mit.edu 36 5 135300411 135300411 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012159 exon5 c.C229A p.H77N . . . FBXL21 26223 broad.mit.edu 36 5 135304179 135304179 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012159 exon7 c.C592A p.L198I . . . FBXL21 26223 broad.mit.edu 36 5 135304891 135304891 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012159 exon8 c.G937A p.E313K . . . LECT2 3950 broad.mit.edu 36 5 135314884 135314884 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002302 exon3 c.A216G p.G72G . . . SMAD5 4090 broad.mit.edu 36 5 135517425 135517425 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001001419 exon4 c.A77G p.E26G . . . TRPC7 57113 broad.mit.edu 36 5 135629971 135629971 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020389 exon5 c.C1181A p.S394Y . . . TRPC7 57113 broad.mit.edu 36 5 135679347 135679347 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020389 exon3 c.C800A p.S267Y . . . SPOCK1 6695 broad.mit.edu 36 5 136476104 136476104 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004598 exon5 c.G393A p.S131S . . . KLHL3 26249 broad.mit.edu 36 5 137025584 137025584 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017415 exon7 c.G672T p.E224D . . . MYOT 9499 broad.mit.edu 36 5 137234252 137234252 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006790 exon2 c.G13A p.E5K . . . MYOT 9499 broad.mit.edu 36 5 137234418 137234418 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006790 exon2 c.C179T p.S60F . . . MYOT 9499 broad.mit.edu 36 5 137245616 137245616 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006790 exon6 c.T739G p.F247V . . . MYOT 9499 broad.mit.edu 36 5 137250898 137250898 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006790 exon10 c.A1422G p.K474K . . . FAM13B 51306 broad.mit.edu 36 5 137303829 137303829 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016603 exon23 c.C2732A p.S911Y . . . FAM13B 51306 broad.mit.edu 36 5 137370587 137370587 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016603 exon7 c.C839T p.T280M . . . FAM13B 51306 broad.mit.edu 36 5 137381950 137381950 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016603 exon4 c.G310T p.E104X . . . WNT8A 7478 broad.mit.edu 36 5 137454318 137454318 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_058244 exon6 c.C713T p.A238V . . . BRD8 10902 broad.mit.edu 36 5 137516300 137516300 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139199 exon21 c.G2626T p.D876Y . . . CDC25C 995 broad.mit.edu 36 5 137655663 137655663 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001790 exon8 c.G657T p.E219D . . . FAM53C 51307 broad.mit.edu 36 5 137708422 137708422 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135647 exon4 c.C146T p.S49F . . . FAM53C 51307 broad.mit.edu 36 5 137709197 137709197 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001135647 exon4 c.G921T p.Q307H . . . DNAH5 1767 broad.mit.edu 36 5 13774199 13774199 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon71 c.G12189T p.G4063G . . . KDM3B 51780 broad.mit.edu 36 5 137754829 137754829 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016604 exon8 c.A1609C p.S537R . . . KDM3B 51780 broad.mit.edu 36 5 137793918 137793918 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016604 exon22 c.C4975T p.R1659C . . . REEP2 51308 broad.mit.edu 36 5 137804642 137804642 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016606 exon2 c.A71G p.Y24C . . . ETF1 2107 broad.mit.edu 36 5 137875073 137875073 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004730 exon7 c.G852T p.K284N . . . CTNNA1 1495 broad.mit.edu 36 5 138145561 138145561 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001903 exon2 c.A49C p.S17R . . . DNAH5 1767 broad.mit.edu 36 5 13822110 13822110 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon58 c.G9856A p.A3286T . . . LRRTM2 26045 broad.mit.edu 36 5 138237344 138237344 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015564 exon2 c.G805T p.D269Y . . . LRRTM2 26045 broad.mit.edu 36 5 138237680 138237680 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015564 exon2 c.C469T p.R157W . . . LRRTM2 26045 broad.mit.edu 36 5 138237921 138237921 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015564 exon2 c.C228T p.L76L . . . DNAH5 1767 broad.mit.edu 36 5 13830394 13830394 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon54 c.G9022T p.G3008X . . . SIL1 64374 broad.mit.edu 36 5 138315444 138315444 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001037633 exon9 c.G796A p.E266K . . . DNAH5 1767 broad.mit.edu 36 5 13845162 13845162 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon50 c.C8389T p.L2797F . . . DNAH5 1767 broad.mit.edu 36 5 13846683 13846683 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon49 c.G8165T p.R2722M . . . DNAH5 1767 broad.mit.edu 36 5 13860783 13860783 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon47 c.G7804T p.G2602X . . . MATR3 9782 broad.mit.edu 36 5 138689119 138689119 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001194955 exon13 c.C2240A p.S747Y . . . CLPTM1L 81037 broad.mit.edu 36 5 1387416 1387416 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030782 exon7 c.C879T p.V293V . . . SLC23A1 9963 broad.mit.edu 36 5 138746170 138746170 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005847 exon2 c.G60A p.S20S . . . DNAJC18 202052 broad.mit.edu 36 5 138783705 138783705 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152686 exon7 c.G888A p.E296E . . . DNAH5 1767 broad.mit.edu 36 5 13883838 13883838 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon36 c.G5929T p.A1977S . . . DNAH5 1767 broad.mit.edu 36 5 13892610 13892610 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon35 c.G5737T p.D1913Y . . . PSD2 84249 broad.mit.edu 36 5 139197422 139197422 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032289 exon12 c.C1694T p.S565L . . . DNAH5 1767 broad.mit.edu 36 5 13921025 13921025 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon25 c.A3911G p.Y1304C . . . DNAH5 1767 broad.mit.edu 36 5 13924031 13924031 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon24 c.A3679G p.S1227G . . . DNAH5 1767 broad.mit.edu 36 5 13924755 13924755 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon23 c.G3516T p.Q1172H . . . DNAH5 1767 broad.mit.edu 36 5 13929877 13929877 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon22 c.G3312T p.K1104N . . . DNAH5 1767 broad.mit.edu 36 5 13938136 13938136 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon19 c.G2945A p.R982H . . . PFDN1 5201 broad.mit.edu 36 5 139641220 139641220 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002622 exon3 c.G283T p.E95X . . . SLC4A9 83697 broad.mit.edu 36 5 139732064 139732064 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031467 exon20 c.G2724T p.Q908H . . . DNAH5 1767 broad.mit.edu 36 5 13973716 13973716 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001369 exon6 c.G671A p.R224Q . . . DNAH5 1767 broad.mit.edu 36 5 13976496 13976496 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon4 c.C331A p.P111T . . . DNAH5 1767 broad.mit.edu 36 5 13981280 13981280 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001369 exon3 c.G200T p.R67I . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139886185 139886185 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017747 exon26 c.G4913T p.S1638I . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139889201 139889201 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017747 exon29 c.G6486A p.T2162T . . . HARS2 23438 broad.mit.edu 36 5 140057440 140057440 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012208 exon11 c.G1300A p.D434N . . . PCDHA1 56147 broad.mit.edu 36 5 140147466 140147466 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031410 exon1 c.G1407A p.P469P . . . PCDHA3 56145 broad.mit.edu 36 5 140161299 140161299 + Missense_Mutation SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031497 exon1 c.C333G p.D111E . . . PCDHA3 56145 broad.mit.edu 36 5 140161768 140161768 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031497 exon1 c.G802A p.D268N . . . PCDHA4 56144 broad.mit.edu 36 5 140167338 140167338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031500 exon1 c.G382A p.D128N . . . PCDHA4 56144 broad.mit.edu 36 5 140167906 140167906 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031500 exon1 c.A950C p.E317A . . . PCDHA4 56144 broad.mit.edu 36 5 140168774 140168774 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031500 exon1 c.G1818A p.W606X . . . PCDHA5 56143 broad.mit.edu 36 5 140183648 140183648 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018908 exon1 c.G2104A p.A702T . . . PCDHA6 56142 broad.mit.edu 36 5 140188451 140188451 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018909 exon1 c.G591T p.K197N . . . PCDHA6 56142 broad.mit.edu 36 5 140188810 140188810 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_018909 exon1 c.A950G p.K317R . . . PCDHA6 56142 broad.mit.edu 36 5 140189156 140189156 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018909 exon1 c.G1296A p.S432S . . . PCDHA8 56140 broad.mit.edu 36 5 140201417 140201417 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_031856 exon1 c.C327T p.I109I . . . PCDHA9 9752 broad.mit.edu 36 5 140209893 140209893 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014005 exon1 c.G1629A p.P543P . . . PCDHA9 9752 broad.mit.edu 36 5 140210023 140210023 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014005 exon1 c.G1759A p.A587T . . . PCDHA9 9752 broad.mit.edu 36 5 140210193 140210193 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_014005 exon1 c.G1929A p.P643P . . . PCDHA9 9752 broad.mit.edu 36 5 140210681 140210681 + Intron SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014005 exon1 c.T2417A p.F806Y . . . PCDHA10 56139 broad.mit.edu 36 5 140215889 140215889 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031860 exon1 c.G72T p.E24D . . . PCDHA10 56139 broad.mit.edu 36 5 140216186 140216186 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031860 exon1 c.G369T p.K123N . . . PCDHA10 56139 broad.mit.edu 36 5 140216703 140216703 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031860 exon1 c.G886A p.E296K . . . PCDHA11 56138 broad.mit.edu 36 5 140229674 140229674 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031861 exon1 c.G802T p.D268Y . . . PCDHA12 56137 broad.mit.edu 36 5 140235481 140235481 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031864 exon1 c.G240T p.Q80H . . . PCDHA12 56137 broad.mit.edu 36 5 140236081 140236081 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_031864 exon1 c.G840A p.G280G . . . PCDHA13 56136 broad.mit.edu 36 5 140242828 140242828 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031865 exon1 c.T791G p.L264R . . . PCDHA13 56136 broad.mit.edu 36 5 140242923 140242923 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_031865 exon1 c.A886C p.N296H . . . PCDHA13 56136 broad.mit.edu 36 5 140244432 140244432 + Splice_Site SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031865 exon1 c.G2395A p.V799I . . . PCDHAC1 56135 broad.mit.edu 36 5 140287699 140287699 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031882 exon1 c.G1038A p.S346S . . . PCDHAC1 56135 broad.mit.edu 36 5 140288543 140288543 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031882 exon1 c.G1882A p.D628N . . . PCDHAC2 56134 broad.mit.edu 36 5 140327261 140327261 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018899 exon1 c.G726T p.Q242H . . . PCDHB1 29930 broad.mit.edu 36 5 140411503 140411503 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013340 exon1 c.G264T p.E88D . . . PCDHB1 29930 broad.mit.edu 36 5 140412296 140412296 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013340 exon1 c.T1057C p.S353P . . . PCDHB2 56133 broad.mit.edu 36 5 140454716 140454716 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018936 exon1 c.A158G p.D53G . . . PCDHB2 56133 broad.mit.edu 36 5 140456255 140456255 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018936 exon1 c.C1697T p.P566L . . . PCDHB3 56132 broad.mit.edu 36 5 140460715 140460715 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018937 exon1 c.G298T p.E100X . . . PCDHB3 56132 broad.mit.edu 36 5 140461276 140461276 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018937 exon1 c.G859T p.E287X . . . PCDHB3 56132 broad.mit.edu 36 5 140462541 140462541 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018937 exon1 c.C2124T p.F708F . . . PCDHB5 26167 broad.mit.edu 36 5 140497134 140497134 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_015669 exon1 c.A1934G p.D645G . . . PCDHB5 26167 broad.mit.edu 36 5 140497321 140497321 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015669 exon1 c.C2121T p.F707F . . . PCDHB6 56130 broad.mit.edu 36 5 140511646 140511646 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018939 exon1 c.G1624A p.E542K . . . PCDHB6 56130 broad.mit.edu 36 5 140512126 140512126 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018939 exon1 c.T2104G p.S702A . . . PCDHB7 56129 broad.mit.edu 36 5 140533000 140533000 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018940 exon1 c.C400A p.L134I . . . PCDHB7 56129 broad.mit.edu 36 5 140533075 140533075 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018940 exon1 c.G475A p.D159N . . . PCDHB7 56129 broad.mit.edu 36 5 140533357 140533357 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018940 exon1 c.G757A p.E253K . . . PCDHB16 57717 broad.mit.edu 36 5 140544442 140544442 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_020957 exon1 c.C2124T p.F708F . . . PCDHB10 56126 broad.mit.edu 36 5 140553584 140553584 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018930 exon1 c.C1275A p.D425E . . . PCDHB10 56126 broad.mit.edu 36 5 140553927 140553927 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018930 exon1 c.G1618A p.A540T . . . PCDHB11 56125 broad.mit.edu 36 5 140559985 140559985 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018931 exon1 c.T454C p.F152L . . . PCDHB12 56124 broad.mit.edu 36 5 140569687 140569687 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018932 exon1 c.G1024A p.D342N . . . PCDHB12 56124 broad.mit.edu 36 5 140569837 140569837 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018932 exon1 c.G1174A p.V392M . . . PCDHB13 56123 broad.mit.edu 36 5 140574809 140574809 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018933 exon1 c.C930T p.F310F . . . PCDHB13 56123 broad.mit.edu 36 5 140575990 140575990 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018933 exon1 c.C2111T p.S704L . . . PCDHB15 56121 broad.mit.edu 36 5 140606228 140606228 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018935 exon1 c.G898T p.E300X . . . TAF7 6879 broad.mit.edu 36 5 140679046 140679046 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005642 exon1 c.G750T p.E250D . . . PCDHGA1 56114 broad.mit.edu 36 5 140690891 140690891 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031993 exon1 c.C456A p.V152V . . . PCDHGA1 56114 broad.mit.edu 36 5 140691514 140691514 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031993 exon1 c.T1079G p.F360C . . . PCDHGA1 56114 broad.mit.edu 36 5 140692822 140692822 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031993 exon1 c.C2387A p.S796Y . . . PCDHGA2 56113 broad.mit.edu 36 5 140700362 140700362 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032009 exon1 c.C1640A p.S547X . . . PCDHGA3 56112 broad.mit.edu 36 5 140704157 140704157 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018916 exon1 c.G373T p.D125Y . . . PCDHGA3 56112 broad.mit.edu 36 5 140705506 140705506 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018916 exon1 c.C1722T p.G574G . . . PCDHGB1 56104 broad.mit.edu 36 5 140711113 140711113 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018922 exon1 c.C1102T p.R368X . . . PCDHGB2 56103 broad.mit.edu 36 5 140720046 140720046 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018923 exon1 c.C160A p.L54M . . . PCDHGA5 56110 broad.mit.edu 36 5 140724984 140724984 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032054 exon1 c.C903A p.I301I . . . PCDHGB3 56102 broad.mit.edu 36 5 140730213 140730213 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018924 exon1 c.C68A p.S23Y . . . PCDHGB3 56102 broad.mit.edu 36 5 140731560 140731560 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018924 exon1 c.C1415T p.A472V . . . PCDHGB3 56102 broad.mit.edu 36 5 140731814 140731814 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018924 exon1 c.G1669A p.D557N . . . PCDHGA6 56109 broad.mit.edu 36 5 140734032 140734032 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032086 exon1 c.C198T p.I66I . . . PCDHGA6 56109 broad.mit.edu 36 5 140736073 140736073 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032086 exon1 c.C2239T p.R747W . . . PCDHGA7 56108 broad.mit.edu 36 5 140743049 140743049 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032087 exon1 c.C399A p.F133L . . . PCDHGA7 56108 broad.mit.edu 36 5 140744696 140744696 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032087 exon1 c.C2046T p.D682D . . . PCDHGA7 56108 broad.mit.edu 36 5 140744788 140744788 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032087 exon1 c.C2138T p.A713V . . . PCDHGB4 8641 broad.mit.edu 36 5 140749213 140749213 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032098 exon1 c.C1578T p.F526F . . . PCDHGB4 8641 broad.mit.edu 36 5 140749305 140749305 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032098 exon1 c.C1670T p.A557V . . . PCDHGA8 9708 broad.mit.edu 36 5 140754572 140754572 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032088 exon1 c.G2008A p.E670K . . . PCDHGB5 56101 broad.mit.edu 36 5 140758503 140758503 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032099 exon1 c.C625T p.R209C . . . PCDHGB5 56101 broad.mit.edu 36 5 140758943 140758943 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032099 exon1 c.C1065T p.N355N . . . PCDHGB5 56101 broad.mit.edu 36 5 140759530 140759530 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032099 exon1 c.G1652A p.R551Q . . . PCDHGA9 56107 broad.mit.edu 36 5 140763298 140763298 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018921 exon1 c.G595A p.A199T . . . PCDHGA9 56107 broad.mit.edu 36 5 140763867 140763867 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018921 exon1 c.G1164T p.E388D . . . PCDHGB6 56100 broad.mit.edu 36 5 140769135 140769135 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018926 exon1 c.T1182G p.I394M . . . PCDHGB6 56100 broad.mit.edu 36 5 140769458 140769458 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018926 exon1 c.C1505T p.S502L . . . PCDHGA10 56106 broad.mit.edu 36 5 140773637 140773637 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032090 exon1 c.C711T p.F237F . . . PCDHGA10 56106 broad.mit.edu 36 5 140773749 140773749 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032090 exon1 c.G823A p.E275K . . . PCDHGA10 56106 broad.mit.edu 36 5 140774654 140774654 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032090 exon1 c.C1728A p.S576S . . . PCDHGB7 56099 broad.mit.edu 36 5 140777685 140777685 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032101 exon1 c.C75A p.F25L . . . PCDHGB7 56099 broad.mit.edu 36 5 140778578 140778578 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032101 exon1 c.A968G p.D323G . . . PCDHGB7 56099 broad.mit.edu 36 5 140778654 140778654 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032101 exon1 c.C1044A p.I348I . . . PCDHGA11 56105 broad.mit.edu 36 5 140782127 140782127 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018914 exon1 c.C1149A p.V383V . . . PCDHGA11 56105 broad.mit.edu 36 5 140782634 140782634 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018914 exon1 c.C1656T p.F552F . . . PCDHGA12 26025 broad.mit.edu 36 5 140791574 140791574 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032094 exon1 c.C1064T p.S355L . . . PCDHGA12 26025 broad.mit.edu 36 5 140791637 140791637 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032094 exon1 c.C1127A p.S376Y . . . PCDHGA12 26025 broad.mit.edu 36 5 140791737 140791737 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032094 exon1 c.C1227A p.V409V . . . PCDHGA12 26025 broad.mit.edu 36 5 140792196 140792196 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032094 exon1 c.C1686A p.I562I . . . PCDHGC3 5098 broad.mit.edu 36 5 140837240 140837240 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032402 exon1 c.C1373A p.S458Y . . . PCDHGC4 56098 broad.mit.edu 36 5 140845558 140845558 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032406 exon1 c.C634A p.L212M . . . PCDHGC4 56098 broad.mit.edu 36 5 140845781 140845781 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032406 exon1 c.C857A p.P286H . . . RELL2 285613 broad.mit.edu 36 5 140998034 140998034 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001130029 exon2 c.C58A p.L20M . . . FCHSD1 89848 broad.mit.edu 36 5 141008998 141008998 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033449 exon6 c.G437A p.R146Q . . . FCHSD1 89848 broad.mit.edu 36 5 141010136 141010136 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_033449 exon3 c.G139T p.A47S . . . ARAP3 64411 broad.mit.edu 36 5 141019638 141019638 + Silent SNP C G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C G C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022481 exon22 c.G3159C p.R1053R . . . ARAP3 64411 broad.mit.edu 36 5 141031085 141031085 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022481 exon13 c.G1921T p.A641S . . . KIAA0141 9812 broad.mit.edu 36 5 141298421 141298421 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001142603 exon12 c.C1461T p.L487L . . . PCDH12 51294 broad.mit.edu 36 5 141317077 141317077 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016580 exon1 c.C524A p.S175Y . . . PCDH12 51294 broad.mit.edu 36 5 141317463 141317463 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016580 exon1 c.C138T p.I46I . . . ARHGAP26 23092 broad.mit.edu 36 5 142573817 142573817 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015071 exon22 c.C2327T p.S776L . . . NR3C1 2908 broad.mit.edu 36 5 142660462 142660462 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018074 exon5 c.G1528T p.E510X . . . NR3C1 2908 broad.mit.edu 36 5 142759746 142759746 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001018074 exon2 c.C852T p.I284I . . . TRIO 7204 broad.mit.edu 36 5 14344124 14344124 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_007118 exon5 c.G840A p.Q280Q . . . KCTD16 57528 broad.mit.edu 36 5 143567042 143567042 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020768 exon3 c.G572A p.R191Q . . . TRIO 7204 broad.mit.edu 36 5 14389771 14389771 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007118 exon11 c.C1981T p.R661W . . . GRXCR2 643226 broad.mit.edu 36 5 145226403 145226403 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001080516 exon2 c.G418T p.D140Y . . . LARS 51520 broad.mit.edu 36 5 145482300 145482300 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020117 exon30 c.A3140C p.K1047T . . . RBM27 54439 broad.mit.edu 36 5 145593321 145593321 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018989 exon7 c.G966A p.G322G . . . POU4F3 5459 broad.mit.edu 36 5 145700170 145700170 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002700 exon2 c.G987T p.Q329H . . . TCERG1 10915 broad.mit.edu 36 5 145816940 145816940 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040006 exon3 c.G287T p.R96I . . . TCERG1 10915 broad.mit.edu 36 5 145819079 145819079 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040006 exon4 c.C878T p.A293V . . . TCERG1 10915 broad.mit.edu 36 5 145863185 145863185 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040006 exon16 c.C2374T p.R792X . . . TCERG1 10915 broad.mit.edu 36 5 145863724 145863724 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040006 exon17 c.G2629T p.E877X . . . TCERG1 10915 broad.mit.edu 36 5 145870268 145870268 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040006 exon21 c.G3104A p.R1035Q . . . STK32A 202374 broad.mit.edu 36 5 146639098 146639098 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001112724 exon4 c.C204A p.V68V . . . DPYSL3 1809 broad.mit.edu 36 5 146775502 146775502 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001387 exon4 c.C441T p.S147S . . . JAKMIP2 9832 broad.mit.edu 36 5 146996000 146996000 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014790 exon12 c.G1655T p.R552I . . . JAKMIP2 9832 broad.mit.edu 36 5 147021001 147021001 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014790 exon3 c.G330T p.E110D . . . SPINK5 11005 broad.mit.edu 36 5 147461166 147461166 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001127699 exon14 c.C1276T p.Q426X . . . SPINK5 11005 broad.mit.edu 36 5 147485291 147485291 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001127698 exon29 c.A2751T p.R917S . . . ANKH 56172 broad.mit.edu 36 5 14766763 14766763 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_054027 exon10 c.G1155A p.A385A . . . HTR4 3360 broad.mit.edu 36 5 147869777 147869777 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000870 exon6 c.G511T p.E171X . . . SH3TC2 79628 broad.mit.edu 36 5 148387541 148387541 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024577 exon11 c.C1947T p.H649H . . . AFAP1L1 134265 broad.mit.edu 36 5 148699780 148699780 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152406 exon19 c.G2301T p.K767N . . . SLC26A2 1836 broad.mit.edu 36 5 149337888 149337888 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000112 exon2 c.C480A p.I160I . . . TIGD6 81789 broad.mit.edu 36 5 149356051 149356051 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030953 exon2 c.G54T p.M18I . . . PDGFRB 5159 broad.mit.edu 36 5 149495386 149495386 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002609 exon3 c.G289T p.E97X . . . ARSI 340075 broad.mit.edu 36 5 149657673 149657673 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001012301 exon2 c.G1007A p.R336Q . . . TCOF1 6949 broad.mit.edu 36 5 149747685 149747685 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001135243 exon18 c.G2887A p.D963N . . . TCOF1 6949 broad.mit.edu 36 5 149753143 149753143 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001135243 exon23 c.T3616G p.Y1206D . . . TCOF1 6949 broad.mit.edu 36 5 149756476 149756476 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001135243 exon24 c.C4220T p.S1407F . . . RBM22 55696 broad.mit.edu 36 5 150051568 150051568 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018047 exon11 c.C1201A p.H401N . . . ANXA6 309 broad.mit.edu 36 5 150465022 150465022 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001155 exon24 c.G1816A p.D606N . . . CCDC69 26112 broad.mit.edu 36 5 150558811 150558811 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015621 exon4 c.C259T p.R87X . . . FAT2 2196 broad.mit.edu 36 5 150865613 150865613 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon23 c.G12756A p.M4252I . . . FAT2 2196 broad.mit.edu 36 5 150891669 150891669 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001447 exon13 c.C9483A p.S3161S . . . FAT2 2196 broad.mit.edu 36 5 150902189 150902189 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon9 c.G8692T p.D2898Y . . . FAT2 2196 broad.mit.edu 36 5 150903486 150903486 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon9 c.G7395T p.V2465V . . . FAT2 2196 broad.mit.edu 36 5 150903600 150903600 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon9 c.C7281A p.F2427L . . . FAT2 2196 broad.mit.edu 36 5 150903749 150903749 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon9 c.G7132T p.E2378X . . . FAT2 2196 broad.mit.edu 36 5 150904583 150904583 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon9 c.G6298A p.G2100R . . . FAT2 2196 broad.mit.edu 36 5 150914335 150914335 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon4 c.C3726A p.F1242L . . . FAT2 2196 broad.mit.edu 36 5 150925874 150925874 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon1 c.C2812A p.L938M . . . FAT2 2196 broad.mit.edu 36 5 150928128 150928128 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon1 c.C558A p.A186A . . . FAT2 2196 broad.mit.edu 36 5 150928574 150928574 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001447 exon1 c.T112C p.Y38H . . . SPARC 6678 broad.mit.edu 36 5 151031407 151031407 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003118 exon5 c.G250A p.E84K . . . G3BP1 10146 broad.mit.edu 36 5 151159719 151159719 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005754 exon9 c.G920A p.R307Q . . . LPCAT1 79888 broad.mit.edu 36 5 1516877 1516877 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024830 exon14 c.C1494T p.F498F . . . NMUR2 56923 broad.mit.edu 36 5 151764217 151764217 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020167 exon1 c.C651A p.I217I . . . FAM114A2 10827 broad.mit.edu 36 5 153394601 153394601 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018691 exon2 c.G106T p.G36C . . . LARP1 23367 broad.mit.edu 36 5 154152506 154152506 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015315 exon4 c.G465A p.K155K . . . LARP1 23367 broad.mit.edu 36 5 154153636 154153636 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015315 exon6 c.G721A p.D241N . . . LARP1 23367 broad.mit.edu 36 5 154159744 154159744 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015315 exon10 c.G1434T p.E478D . . . C5orf4 10826 broad.mit.edu 36 5 154190579 154190579 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032385 exon5 c.G341A p.R114Q . . . GEMIN5 25929 broad.mit.edu 36 5 154267380 154267380 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015465 exon16 c.C2359T p.R787W . . . GEMIN5 25929 broad.mit.edu 36 5 154287200 154287200 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015465 exon7 c.T1018G p.L340V . . . KIF4B 285643 broad.mit.edu 36 5 154375004 154375004 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099293 exon1 c.G1392T p.E464D . . . KIF4B 285643 broad.mit.edu 36 5 154375645 154375645 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001099293 exon1 c.G2033A p.R678Q . . . HAVCR1 26762 broad.mit.edu 36 5 156412189 156412189 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012206 exon3 c.G434A p.R145Q . . . MED7 9443 broad.mit.edu 36 5 156498700 156498700 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001100816 exon2 c.G321T p.E107D . . . FAM71B 153745 broad.mit.edu 36 5 156522777 156522777 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_130899 exon2 c.G1077A p.S359S . . . FAM71B 153745 broad.mit.edu 36 5 156525477 156525477 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_130899 exon1 c.A281C p.K94T . . . ITK 3702 broad.mit.edu 36 5 156540575 156540575 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005546 exon1 c.C9T p.N3N . . . ITK 3702 broad.mit.edu 36 5 156568515 156568515 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005546 exon2 c.G176A p.R59Q . . . ITK 3702 broad.mit.edu 36 5 156570942 156570942 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005546 exon3 c.C310T p.L104L . . . ITK 3702 broad.mit.edu 36 5 156601275 156601275 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005546 exon11 c.C1027T p.Q343X . . . CYFIP2 26999 broad.mit.edu 36 5 156698717 156698717 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037333 exon22 c.C2460T p.F820F . . . CYFIP2 26999 broad.mit.edu 36 5 156718638 156718638 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037333 exon24 c.C2721T p.F907F . . . CYFIP2 26999 broad.mit.edu 36 5 156748972 156748972 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001037333 exon29 c.C3405T p.F1135F . . . SOX30 11063 broad.mit.edu 36 5 157008395 157008395 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_007017 exon2 c.G1055A p.R352Q . . . LSM11 134353 broad.mit.edu 36 5 157111065 157111065 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173491 exon2 c.C538T p.R180W . . . CLINT1 9685 broad.mit.edu 36 5 157173816 157173816 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014666 exon4 c.G307T p.E103X . . . RNF145 153830 broad.mit.edu 36 5 158518336 158518336 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199382 exon11 c.G1954A p.D652N . . . RNF145 153830 broad.mit.edu 36 5 158518482 158518482 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001199382 exon11 c.C1808T p.T603I . . . IL12B 3593 broad.mit.edu 36 5 158682800 158682800 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002187 exon3 c.C204A p.V68V . . . ADRA1B 147 broad.mit.edu 36 5 159276719 159276719 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000679 exon1 c.C229T p.R77W . . . ADRA1B 147 broad.mit.edu 36 5 159277051 159277051 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000679 exon1 c.G561A p.P187P . . . TTC1 7265 broad.mit.edu 36 5 159424623 159424623 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_003314 exon8 c.C852A p.F284L . . . PWWP2A 114825 broad.mit.edu 36 5 159437747 159437747 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_052927 exon4 c.G1676T p.R559I . . . PWWP2A 114825 broad.mit.edu 36 5 159452853 159452853 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001130864 exon2 c.G1382A p.R461Q . . . C5orf54 63920 broad.mit.edu 36 5 159754016 159754016 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022090 exon2 c.C1060A p.L354I . . . C5orf54 63920 broad.mit.edu 36 5 159754290 159754290 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022090 exon2 c.G786T p.E262D . . . C5orf54 63920 broad.mit.edu 36 5 159754476 159754476 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022090 exon2 c.C600T p.I200I . . . FBXL7 23194 broad.mit.edu 36 5 15981004 15981004 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012304 exon3 c.G133A p.D45N . . . FBXL7 23194 broad.mit.edu 36 5 15989632 15989632 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012304 exon4 c.G813T p.Q271H . . . GABRB2 2561 broad.mit.edu 36 5 160819427 160819427 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000813 exon5 c.A239G p.D80G . . . MARCH11 441061 broad.mit.edu 36 5 16120624 16120624 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001102562 exon4 c.G1165T p.D389Y . . . GABRA1 2554 broad.mit.edu 36 5 161250623 161250623 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127646 exon8 c.G845A p.R282K . . . GABRA1 2554 broad.mit.edu 36 5 161256709 161256709 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127646 exon10 c.G1074T p.K358N . . . GABRG2 2566 broad.mit.edu 36 5 161463490 161463490 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198904 exon6 c.G649T p.E217X . . . GABRG2 2566 broad.mit.edu 36 5 161463589 161463589 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198904 exon6 c.G748A p.E250K . . . CCNG1 900 broad.mit.edu 36 5 162798981 162798981 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004060 exon2 c.G141T p.M47I . . . MAT2B 27430 broad.mit.edu 36 5 162877814 162877814 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013283 exon7 c.G872T p.R291I . . . ZNF622 90441 broad.mit.edu 36 5 16511672 16511672 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033414 exon4 c.G1116T p.K372N . . . FAM134B 54463 broad.mit.edu 36 5 16528211 16528211 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001034850 exon9 c.A1133G p.E378G . . . MYO10 4651 broad.mit.edu 36 5 16723653 16723653 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012334 exon39 c.G5865A p.S1955S . . . MYO10 4651 broad.mit.edu 36 5 16733091 16733091 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012334 exon33 c.G4507A p.D1503N . . . MYO10 4651 broad.mit.edu 36 5 16754512 16754512 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012334 exon25 c.G2992A p.E998K . . . ODZ2 57451 broad.mit.edu 36 5 167554767 167554767 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001122679 exon15 c.C2762A p.S921Y . . . MYO10 4651 broad.mit.edu 36 5 16756249 16756249 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_012334 exon23 c.C2295T p.V765V . . . ODZ2 57451 broad.mit.edu 36 5 167563348 167563348 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001122679 exon18 c.C3480T p.F1160F . . . ODZ2 57451 broad.mit.edu 36 5 167578385 167578385 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001122679 exon23 c.G4884T p.K1628N . . . ODZ2 57451 broad.mit.edu 36 5 167622313 167622313 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001122679 exon29 c.C8218T p.P2740S . . . WWC1 23286 broad.mit.edu 36 5 167788352 167788352 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161661 exon13 c.G1982T p.R661L . . . WWC1 23286 broad.mit.edu 36 5 167790986 167790986 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001161661 exon15 c.G2239A p.D747N . . . RARS 5917 broad.mit.edu 36 5 167848314 167848314 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002887 exon2 c.C175T p.R59X . . . PANK3 79646 broad.mit.edu 36 5 167923505 167923505 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024594 exon4 c.G779T p.R260I . . . SLIT3 6586 broad.mit.edu 36 5 168112622 168112622 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003062 exon18 c.C1889T p.S630L . . . MYO10 4651 broad.mit.edu 36 5 16847905 16847905 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_012334 exon4 c.A317G p.Y106C . . . CCDC99 54908 broad.mit.edu 36 5 168950793 168950793 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017785 exon3 c.A323G p.E108G . . . CCDC99 54908 broad.mit.edu 36 5 168958078 168958078 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_017785 exon9 c.A1053C p.E351D . . . CCDC99 54908 broad.mit.edu 36 5 168960871 168960871 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017785 exon11 c.A1334G p.E445G . . . DOCK2 1794 broad.mit.edu 36 5 169055507 169055507 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004946 exon10 c.C966A p.P322P . . . DOCK2 1794 broad.mit.edu 36 5 169073617 169073617 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004946 exon18 c.G1667A p.S556N . . . DOCK2 1794 broad.mit.edu 36 5 169409858 169409858 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004946 exon41 c.C4092T p.R1364R . . . LCP2 3937 broad.mit.edu 36 5 169626445 169626445 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005565 exon10 c.G717A p.T239T . . . KCNIP1 30820 broad.mit.edu 36 5 170072440 170072440 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001034837 exon2 c.C66T p.I22I . . . KCNIP1 30820 broad.mit.edu 36 5 170081452 170081452 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001034838 exon4 c.C321T p.F107F . . . RANBP17 64901 broad.mit.edu 36 5 170327948 170327948 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022897 exon14 c.A1672C p.K558Q . . . RANBP17 64901 broad.mit.edu 36 5 170542978 170542978 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022897 exon18 c.C1977T p.S659S . . . RANBP17 64901 broad.mit.edu 36 5 170559371 170559371 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022897 exon19 c.G2131T p.E711X . . . RANBP17 64901 broad.mit.edu 36 5 170565163 170565163 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022897 exon20 c.C2173T p.R725X . . . NPM1 4869 broad.mit.edu 36 5 170760472 170760472 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002520 exon8 c.A607C p.N203H . . . STK10 6793 broad.mit.edu 36 5 171449966 171449966 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005990 exon10 c.G1560A p.P520P . . . SH3PXD2B 285590 broad.mit.edu 36 5 171698388 171698388 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001017995 exon13 c.C2326A p.P776T . . . SH3PXD2B 285590 broad.mit.edu 36 5 171706912 171706912 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017995 exon11 c.C1042A p.P348T . . . C5orf41 153222 broad.mit.edu 36 5 172450260 172450260 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168393 exon4 c.G472A p.D158N . . . C5orf41 153222 broad.mit.edu 36 5 172470256 172470256 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153607 exon6 c.G1543T p.V515F . . . STC2 8614 broad.mit.edu 36 5 172685483 172685483 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_003714 exon2 c.T288C p.D96D . . . CPEB4 80315 broad.mit.edu 36 5 173309137 173309137 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030627 exon6 c.C1477T p.R493C . . . THOC3 84321 broad.mit.edu 36 5 175319630 175319630 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032361 exon6 c.G1004T p.S335I . . . FAM153B 202134 broad.mit.edu 36 5 175461187 175461187 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001079529 exon12 c.G661A p.E221K . . . HK3 3101 broad.mit.edu 36 5 176250696 176250696 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002115 exon4 c.G362A p.R121K . . . UIMC1 51720 broad.mit.edu 36 5 176328308 176328308 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001199298 exon6 c.G1054T p.D352Y . . . ZNF346 23567 broad.mit.edu 36 5 176410390 176410390 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012279 exon5 c.G550T p.D184Y . . . NSD1 64324 broad.mit.edu 36 5 176598109 176598109 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022455 exon7 c.C4187T p.T1396M . . . NSD1 64324 broad.mit.edu 36 5 176603865 176603865 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_022455 exon9 c.G4366T p.D1456Y . . . LMAN2 10960 broad.mit.edu 36 5 176697073 176697073 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006816 exon5 c.G572A p.S191N . . . DBN1 1627 broad.mit.edu 36 5 176820115 176820115 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_080881 exon11 c.C885A p.F295L . . . N4BP3 23138 broad.mit.edu 36 5 177481160 177481160 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015111 exon5 c.C1187T p.A396V . . . HNRNPAB 3182 broad.mit.edu 36 5 177569873 177569873 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_031266 exon7 c.G922A p.D308N . . . COL23A1 91522 broad.mit.edu 36 5 177601968 177601968 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173465 exon26 c.C1474T p.R492W . . . ZNF354A 6940 broad.mit.edu 36 5 178071786 178071786 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005649 exon5 c.G1699A p.A567T . . . ZNF354B 117608 broad.mit.edu 36 5 178242596 178242596 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_058230 exon5 c.T537C p.F179F . . . ZNF354B 117608 broad.mit.edu 36 5 178242844 178242844 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_058230 exon5 c.G785T p.R262I . . . ZFP2 80108 broad.mit.edu 36 5 178291369 178291369 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030613 exon5 c.G449T p.R150I . . . ZNF454 285676 broad.mit.edu 36 5 178324569 178324569 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182594 exon5 c.C558A p.V186V . . . ZNF454 285676 broad.mit.edu 36 5 178324934 178324934 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182594 exon5 c.C923T p.A308V . . . ZNF354C 30832 broad.mit.edu 36 5 178438292 178438292 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_014594 exon5 c.T253G p.F85V . . . ZNF354C 30832 broad.mit.edu 36 5 178439266 178439266 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014594 exon5 c.A1227C p.Q409H . . . MAML1 9794 broad.mit.edu 36 5 179125989 179125989 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014757 exon2 c.G1372T p.D458Y . . . RASGEF1C 255426 broad.mit.edu 36 5 179474114 179474114 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_175062 exon11 c.G1117T p.D373Y . . . MAPK9 5601 broad.mit.edu 36 5 179602194 179602194 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139070 exon8 c.C856T p.R286X . . . GFPT2 9945 broad.mit.edu 36 5 179662170 179662170 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005110 exon18 c.C1863T p.C621C . . . CNOT6 57472 broad.mit.edu 36 5 179928754 179928754 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015455 exon10 c.C1066A p.L356I . . . MGAT1 4245 broad.mit.edu 36 5 180151631 180151631 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_002406 exon2 c.G947A p.R316H . . . BTNL3 10917 broad.mit.edu 36 5 180365012 180365012 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_197975 exon8 c.G935T p.R312I . . . TRIM41 90933 broad.mit.edu 36 5 180584320 180584320 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033549 exon1 c.G715A p.E239K . . . TRIM41 90933 broad.mit.edu 36 5 180593913 180593913 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033549 exon6 c.A1425G p.V475V . . . CDH18 1016 broad.mit.edu 36 5 19519339 19519339 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004934 exon12 c.C1710A p.I570I . . . CDH18 1016 broad.mit.edu 36 5 19607629 19607629 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004934 exon8 c.C1069T p.R357C . . . CDH18 1016 broad.mit.edu 36 5 19626926 19626926 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004934 exon7 c.G996T p.K332N . . . PLEKHG4B 153478 broad.mit.edu 36 5 209195 209195 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052909 exon8 c.G1150A p.E384K . . . CDH12 1010 broad.mit.edu 36 5 21852897 21852897 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004061 exon9 c.T916C p.Y306H . . . CDH12 1010 broad.mit.edu 36 5 21878138 21878138 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_004061 exon8 c.G703T p.V235L . . . PLEKHG4B 153478 broad.mit.edu 36 5 222510 222510 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_052909 exon12 c.C2464A p.R822R . . . PRDM9 56979 broad.mit.edu 36 5 23562319 23562319 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020227 exon11 c.G1365T p.E455D . . . CDH10 1008 broad.mit.edu 36 5 24523567 24523567 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006727 exon12 c.G2329T p.E777X . . . CDH10 1008 broad.mit.edu 36 5 24545679 24545679 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006727 exon7 c.G1009A p.D337N . . . CDH9 1007 broad.mit.edu 36 5 26921893 26921893 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016279 exon10 c.C1569A p.F523L . . . CDH9 1007 broad.mit.edu 36 5 26925743 26925743 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016279 exon9 c.T1471C p.Y491H . . . DROSHA 29102 broad.mit.edu 36 5 31550901 31550901 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_013235 exon7 c.G1241A p.R414Q . . . PDZD2 23037 broad.mit.edu 36 5 32019070 32019070 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178140 exon2 c.C529T p.R177C . . . PDZD2 23037 broad.mit.edu 36 5 32019170 32019170 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178140 exon2 c.C629T p.A210V . . . PDZD2 23037 broad.mit.edu 36 5 32096965 32096965 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178140 exon13 c.C2419T p.R807C . . . PDZD2 23037 broad.mit.edu 36 5 32110479 32110479 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178140 exon17 c.C3510T p.G1170G . . . PDZD2 23037 broad.mit.edu 36 5 32124690 32124690 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_178140 exon19 c.C5379T p.I1793I . . . MTMR12 54545 broad.mit.edu 36 5 32274899 32274899 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040446 exon13 c.C1309T p.R437C . . . MTMR12 54545 broad.mit.edu 36 5 32309862 32309862 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040446 exon3 c.A266C p.E89A . . . ZFR 51663 broad.mit.edu 36 5 32400101 32400101 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_016107 exon18 c.C2873T p.A958V . . . ZFR 51663 broad.mit.edu 36 5 32415030 32415030 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016107 exon17 c.T2783C p.I928T . . . ZFR 51663 broad.mit.edu 36 5 32426182 32426182 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016107 exon12 c.C2098A p.L700M . . . C5orf23 79614 broad.mit.edu 36 5 32825411 32825411 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024563 exon1 c.G147T p.G49G . . . TARS 6897 broad.mit.edu 36 5 33502807 33502807 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152295 exon18 c.G1983T p.K661N . . . TARS 6897 broad.mit.edu 36 5 33503559 33503559 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152295 exon19 c.G2161T p.E721X . . . ADAMTS12 81792 broad.mit.edu 36 5 33612951 33612951 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030955 exon19 c.C2937T p.C979C ADAMTS12,kidney,NS,Substitution - coding silent,0 . . ADAMTS12 81792 broad.mit.edu 36 5 33651917 33651917 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030955 exon15 c.C2161T p.L721F . . . ADAMTS12 81792 broad.mit.edu 36 5 33697843 33697843 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_030955 exon6 c.G975A p.Q325Q . . . RXFP3 51289 broad.mit.edu 36 5 33973052 33973052 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_016568 exon1 c.C450T p.F150F . . . SLC45A2 51151 broad.mit.edu 36 5 33999607 33999607 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012509 exon3 c.C834T p.Y278Y . . . SLC45A2 51151 broad.mit.edu 36 5 34018191 34018191 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012509 exon2 c.G469A p.D157N . . . SLC45A2 51151 broad.mit.edu 36 5 34020226 34020226 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001012509 exon1 c.T220C p.W74R . . . AMACR 23600 broad.mit.edu 36 5 34025015 34025015 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014324 exon5 c.G1089T p.E363D . . . AMACR 23600 broad.mit.edu 36 5 34025273 34025273 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014324 exon5 c.G831T p.E277D . . . RAI14 26064 broad.mit.edu 36 5 34844484 34844484 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145522 exon7 c.G418A p.E140K . . . RAI14 26064 broad.mit.edu 36 5 34859468 34859468 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145522 exon14 c.G1677T p.E559D . . . RAI14 26064 broad.mit.edu 36 5 34865620 34865620 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145522 exon16 c.C2739T p.V913V . . . RAI14 26064 broad.mit.edu 36 5 34866592 34866592 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001145522 exon17 c.C2821A p.L941I . . . TTC23L 153657 broad.mit.edu 36 5 34898830 34898830 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_144725 exon5 c.G450A p.T150T . . . DNAJC21 134218 broad.mit.edu 36 5 34985420 34985420 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_194283 exon10 c.G1201T p.D401Y . . . PRLR 5618 broad.mit.edu 36 5 35104711 35104711 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000949 exon8 c.T712C p.W238R . . . SPEF2 79925 broad.mit.edu 36 5 35690531 35690531 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024867 exon7 c.G924T p.E308D . . . SPEF2 79925 broad.mit.edu 36 5 35843025 35843025 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024867 exon36 c.G5292A p.K1764K . . . IL7R 3575 broad.mit.edu 36 5 35896713 35896713 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002185 exon2 c.G85T p.D29Y . . . CAPSL 133690 broad.mit.edu 36 5 35940463 35940463 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144647 exon5 c.G568A p.A190T . . . CAPSL 133690 broad.mit.edu 36 5 35945803 35945803 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_144647 exon4 c.G447T p.Q149H . . . UGT3A1 133688 broad.mit.edu 36 5 35990067 35990067 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152404 exon7 c.G1566T p.K522N . . . UGT3A1 133688 broad.mit.edu 36 5 36001690 36001690 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152404 exon4 c.C398T p.S133F . . . UGT3A2 167127 broad.mit.edu 36 5 36073747 36073747 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168316 exon5 c.G1102T p.E368X . . . UGT3A2 167127 broad.mit.edu 36 5 36075441 36075441 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001168316 exon4 c.C868T p.P290S . . . LMBRD2 92255 broad.mit.edu 36 5 36140964 36140964 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007527 exon17 c.A1990G p.T664A . . . LMBRD2 92255 broad.mit.edu 36 5 36160118 36160118 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001007527 exon7 c.C754T p.R252C . . . SLC1A3 6507 broad.mit.edu 36 5 36665393 36665393 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166695 exon2 c.T266G p.M89R . . . SLC1A3 6507 broad.mit.edu 36 5 36713001 36713001 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166695 exon5 c.C818A p.S273Y . . . SLC1A3 6507 broad.mit.edu 36 5 36716326 36716326 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166695 exon7 c.C1167T p.F389F . . . NIPBL 25836 broad.mit.edu 36 5 36991400 36991400 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015384 exon3 c.G134A p.R45Q . . . NIPBL 25836 broad.mit.edu 36 5 37021032 37021032 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015384 exon10 c.G1993A p.E665K . . . NIPBL 25836 broad.mit.edu 36 5 37021338 37021338 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015384 exon10 c.G2299A p.D767N . . . NIPBL 25836 broad.mit.edu 36 5 37096816 37096816 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015384 exon45 c.A7799G p.D2600G . . . C5orf42 65250 broad.mit.edu 36 5 37144181 37144181 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023073 exon51 c.C9388A p.L3130I . . . C5orf42 65250 broad.mit.edu 36 5 37201446 37201446 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023073 exon36 c.G7485T p.E2495D . . . C5orf42 65250 broad.mit.edu 36 5 37202930 37202930 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023073 exon35 c.G7376A p.R2459K . . . C5orf42 65250 broad.mit.edu 36 5 37204690 37204690 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023073 exon34 c.G7193T p.R2398I . . . C5orf42 65250 broad.mit.edu 36 5 37215940 37215940 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023073 exon28 c.G5673A p.E1891E . . . C5orf42 65250 broad.mit.edu 36 5 37223690 37223690 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_023073 exon22 c.G3823T p.E1275X . . . C5orf42 65250 broad.mit.edu 36 5 37237601 37237601 + 5'UTR SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_023073 exon19 c.T3356C p.V1119A . . . WDR70 55100 broad.mit.edu 36 5 37738858 37738858 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018034 exon13 c.C1328T p.S443F . . . WDR70 55100 broad.mit.edu 36 5 37762767 37762767 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018034 exon17 c.C1740T p.H580H . . . GDNF 2668 broad.mit.edu 36 5 37851699 37851699 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001190468 exon3 c.C498T p.C166C . . . EGFLAM 133584 broad.mit.edu 36 5 38471075 38471075 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182798 exon11 c.C1544T p.S515L . . . LIFR 3977 broad.mit.edu 36 5 38517617 38517617 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001127671 exon20 c.C3131A p.S1044Y . . . RICTOR 253260 broad.mit.edu 36 5 38985659 38985659 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152756 exon31 c.G4048T p.A1350S . . . RICTOR 253260 broad.mit.edu 36 5 38986483 38986483 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152756 exon31 c.G3224A p.R1075Q . . . RICTOR 253260 broad.mit.edu 36 5 39017762 39017762 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152756 exon8 c.G717T p.K239N . . . DAB2 1601 broad.mit.edu 36 5 39412642 39412642 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001343 exon12 c.G2004A p.A668A . . . DAB2 1601 broad.mit.edu 36 5 39418888 39418888 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001343 exon10 c.G930A p.S310S . . . DAB2 1601 broad.mit.edu 36 5 39419088 39419088 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001343 exon10 c.G730A p.D244N . . . PRKAA1 5562 broad.mit.edu 36 5 40800866 40800866 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006251 exon7 c.C1053A p.F351L . . . CARD6 84674 broad.mit.edu 36 5 40888659 40888659 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032587 exon3 c.G1468T p.D490Y . . . C7 730 broad.mit.edu 36 5 40997987 40997987 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000587 exon13 c.G1705T p.E569X . . . C7 730 broad.mit.edu 36 5 41017285 41017285 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_000587 exon18 c.G2385A p.S795S . . . HEATR7B2 133558 broad.mit.edu 36 5 41048561 41048561 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173489 exon30 c.C3016A p.L1006M . . . C6 729 broad.mit.edu 36 5 41178736 41178736 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000065 exon18 c.G2753T p.R918I . . . C6 729 broad.mit.edu 36 5 41194999 41194999 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000065 exon12 c.C1798T p.R600C . . . OXCT1 5019 broad.mit.edu 36 5 41886009 41886009 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000436 exon5 c.C444T p.G148G . . . FBXO4 26272 broad.mit.edu 36 5 41962965 41962965 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_012176 exon2 c.G283T p.D95Y . . . SEPP1 6414 broad.mit.edu 36 5 42842917 42842917 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001085486 exon4 c.C254A p.S85Y . . . MGC42105 167359 broad.mit.edu 36 5 43312984 43312984 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153361 exon3 c.G361T p.E121X . . . C5orf28 64417 broad.mit.edu 36 5 43489808 43489808 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022483 exon2 c.G21T p.K7N . . . C5orf34 375444 broad.mit.edu 36 5 43541649 43541649 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_198566 exon4 c.C890A p.P297H . . . PAIP1 10605 broad.mit.edu 36 5 43565728 43565728 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_183323 exon10 c.G927T p.E309D . . . PAIP1 10605 broad.mit.edu 36 5 43578939 43578939 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_183323 exon4 c.C322T p.R108C . . . PAIP1 10605 broad.mit.edu 36 5 43591695 43591695 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_183323 exon2 c.T93G p.S31R . . . NNT 23530 broad.mit.edu 36 5 43648855 43648855 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_182977 exon3 c.G240T p.Q80H . . . NNT 23530 broad.mit.edu 36 5 43680507 43680507 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_182977 exon9 c.G1136A p.R379Q . . . MRPS30 10884 broad.mit.edu 36 5 44847804 44847804 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016640 exon3 c.G778A p.E260K . . . HCN1 348980 broad.mit.edu 36 5 45302954 45302954 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021072 exon7 c.C1777T p.R593X . . . HCN1 348980 broad.mit.edu 36 5 45432376 45432376 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021072 exon4 c.C1205A p.S402Y . . . HCN1 348980 broad.mit.edu 36 5 45681406 45681406 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_021072 exon2 c.G487T p.G163X . . . PELO 53918 broad.mit.edu 36 5 52132255 52132255 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015946 exon2 c.G270T p.E90D . . . ITGA1 3672 broad.mit.edu 36 5 52247062 52247062 + Silent SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181501 exon15 c.A1869C p.S623S . . . ITGA1 3672 broad.mit.edu 36 5 52271501 52271501 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181501 exon26 c.G3255A p.S1085S . . . ITGA2 3673 broad.mit.edu 36 5 52401767 52401767 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002203 exon17 c.G2155T p.E719X . . . FST 10468 broad.mit.edu 36 5 52815259 52815259 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013409 exon3 c.G446T p.R149I . . . NDUFS4 4724 broad.mit.edu 36 5 53014774 53014774 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002495 exon5 c.C494A p.S165Y . . . ADAMTS16 170690 broad.mit.edu 36 5 5356846 5356846 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_139056 exon20 c.G3153A p.K1051K . . . HSPB3 8988 broad.mit.edu 36 5 53787647 53787647 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006308 exon1 c.G271T p.E91X . . . GZMA 3001 broad.mit.edu 36 5 54439401 54439401 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006144 exon3 c.C238A p.L80I . . . GPX8 493869 broad.mit.edu 36 5 54492631 54492631 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001008397 exon2 c.A257G p.Y86C . . . DHX29 54505 broad.mit.edu 36 5 54594356 54594356 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019030 exon24 c.G3687A p.G1229G . . . DHX29 54505 broad.mit.edu 36 5 54606214 54606214 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019030 exon16 c.G2675T p.R892I . . . DHX29 54505 broad.mit.edu 36 5 54617435 54617435 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019030 exon9 c.G1078T p.E360X . . . SKIV2L2 23517 broad.mit.edu 36 5 54719604 54719604 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015360 exon19 c.C2098A p.L700M . . . SLC38A9 153129 broad.mit.edu 36 5 54996445 54996445 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_173514 exon8 c.C530A p.S177X . . . DDX4 54514 broad.mit.edu 36 5 55091786 55091786 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001166533 exon4 c.A129C p.E43D . . . KIAA0947 23379 broad.mit.edu 36 5 5515245 5515245 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015325 exon13 c.G2798T p.R933I . . . KIAA0947 23379 broad.mit.edu 36 5 5517037 5517037 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015325 exon13 c.C4590T p.F1530F . . . KIAA0947 23379 broad.mit.edu 36 5 5519570 5519570 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015325 exon14 c.G6016T p.D2006Y . . . IL31RA 133396 broad.mit.edu 36 5 55214648 55214648 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139017 exon5 c.G474T p.K158N . . . KIAA0947 23379 broad.mit.edu 36 5 5522000 5522000 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015325 exon15 c.C6121A p.L2041I . . . IL31RA 133396 broad.mit.edu 36 5 55231684 55231684 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139017 exon8 c.G1036A p.A346T . . . KIAA0947 23379 broad.mit.edu 36 5 5539894 5539894 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015325 exon18 c.C6581T p.S2194L . . . ANKRD55 79722 broad.mit.edu 36 5 55443226 55443226 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_024669 exon10 c.G1106A p.R369Q . . . MAP3K1 4214 broad.mit.edu 36 5 56204288 56204288 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005921 exon8 c.G1487T p.R496I . . . MAP3K1 4214 broad.mit.edu 36 5 56212750 56212750 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_005921 exon13 c.C2263A p.L755I . . . C5orf35 133383 broad.mit.edu 36 5 56243000 56243000 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171990 exon2 c.C346A p.L116I . . . MIER3 166968 broad.mit.edu 36 5 56264971 56264971 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152622 exon8 c.G607A p.E203K . . . ACTBL2 345651 broad.mit.edu 36 5 56814217 56814217 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001017992 exon1 c.C75T p.D25D . . . PLK2 10769 broad.mit.edu 36 5 57786211 57786211 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006622 exon14 c.C2014T p.R672X . . . PLK2 10769 broad.mit.edu 36 5 57787658 57787658 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006622 exon10 c.C1336T p.R446W . . . PLK2 10769 broad.mit.edu 36 5 57788596 57788596 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006622 exon8 c.C1089A p.F363L . . . GAPT 202309 broad.mit.edu 36 5 57826433 57826433 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_152687 exon3 c.G313T p.G105X . . . RAB3C 115827 broad.mit.edu 36 5 57949398 57949398 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138453 exon2 c.G196A p.D66N . . . RAB3C 115827 broad.mit.edu 36 5 58182807 58182807 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_138453 exon5 c.C556T p.R186C . . . PDE4D 5144 broad.mit.edu 36 5 59099911 59099911 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001197218 exon1 c.G182T p.R61I . . . ERCC8 1161 broad.mit.edu 36 5 60236385 60236385 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000082 exon5 c.T472C p.L158L . . . KIF2A 3796 broad.mit.edu 36 5 61689312 61689312 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001098511 exon8 c.G692A p.R231Q . . . IPO11 51194 broad.mit.edu 36 5 61817032 61817032 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001134779 exon12 c.A1324G p.K442E . . . RNF180 285671 broad.mit.edu 36 5 63545188 63545188 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_178532 exon4 c.T279C p.R93R . . . SREK1IP1 285672 broad.mit.edu 36 5 64055979 64055979 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_173829 exon5 c.C456A p.F152L . . . ADAMTS6 11174 broad.mit.edu 36 5 64502263 64502263 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_197941 exon24 c.C3181A p.R1061R . . . ADAMTS6 11174 broad.mit.edu 36 5 64556534 64556534 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_197941 exon17 c.T2164C p.F722L . . . ADAMTS6 11174 broad.mit.edu 36 5 64661018 64661018 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_197941 exon9 c.T1166C p.I389T . . . PPWD1 23398 broad.mit.edu 36 5 64895056 64895056 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_015342 exon1 c.C163T p.P55S . . . TRIM23 373 broad.mit.edu 36 5 64923504 64923504 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033228 exon11 c.G1573T p.E525X . . . TRIM23 373 broad.mit.edu 36 5 64928756 64928756 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033228 exon8 c.G1187A p.R396Q . . . TRIM23 373 broad.mit.edu 36 5 64941004 64941004 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_033228 exon6 c.G866A p.R289Q . . . TRIM23 373 broad.mit.edu 36 5 64945771 64945771 + Missense_Mutation SNP A T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_033228 exon3 c.T276A p.N92K . . . C5orf44 80006 broad.mit.edu 36 5 64996149 64996149 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_024941 exon13 c.C1209T p.I403I . . . SGTB 54557 broad.mit.edu 36 5 65017021 65017021 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019072 exon6 c.G409T p.D137Y . . . NLN 57486 broad.mit.edu 36 5 65090408 65090408 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020726 exon2 c.A300G p.I100M . . . NLN 57486 broad.mit.edu 36 5 65141683 65141683 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020726 exon11 c.C1778T p.S593L . . . ERBB2IP 55914 broad.mit.edu 36 5 65346284 65346284 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018695 exon7 c.G508A p.E170K . . . SREK1 140890 broad.mit.edu 36 5 65502363 65502363 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_139168 exon10 c.A968C p.K323T . . . MAST4 375449 broad.mit.edu 36 5 66385993 66385993 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015183 exon4 c.G113A p.R38Q . . . MAST4 375449 broad.mit.edu 36 5 66432112 66432112 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015183 exon7 c.G439A p.E147K . . . MAST4 375449 broad.mit.edu 36 5 66481115 66481115 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015183 exon23 c.C2670T p.I890I . . . MAST4 375449 broad.mit.edu 36 5 66496813 66496813 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_015183 exon28 c.C5483A p.S1828Y . . . CD180 4064 broad.mit.edu 36 5 66514512 66514512 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005582 exon3 c.C1915T p.L639L . . . CD180 4064 broad.mit.edu 36 5 66515175 66515175 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005582 exon3 c.G1252T p.E418X . . . CD180 4064 broad.mit.edu 36 5 66515428 66515428 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005582 exon3 c.C999T p.F333F . . . PIK3R1 5295 broad.mit.edu 36 5 67625365 67625365 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181523 exon10 c.G1372T p.E458X . . . PIK3R1 5295 broad.mit.edu 36 5 67626222 67626222 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_181523 exon11 c.G1528T p.E510X . . . PIK3R1 5295 broad.mit.edu 36 5 67627026 67627026 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_181523 exon13 c.C1768T p.R590W . . . PAPD7 11044 broad.mit.edu 36 5 6790711 6790711 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171805 exon2 c.G55A p.E19K . . . PAPD7 11044 broad.mit.edu 36 5 6795698 6795698 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171805 exon5 c.G354T p.K118N . . . PAPD7 11044 broad.mit.edu 36 5 6799444 6799444 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171805 exon7 c.G613T p.E205X . . . PAPD7 11044 broad.mit.edu 36 5 6799517 6799517 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001171805 exon7 c.G686T p.C229F . . . SLC30A5 64924 broad.mit.edu 36 5 68432450 68432450 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_022902 exon2 c.C144T p.F48F . . . SLC30A5 64924 broad.mit.edu 36 5 68448098 68448098 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022902 exon10 c.G1194A p.S398S . . . CENPH 64946 broad.mit.edu 36 5 68526273 68526273 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022909 exon3 c.T234T p.D78D . . . CCDC125 202243 broad.mit.edu 36 5 68638441 68638441 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_176816 exon5 c.A576C p.R192S . . . RAD17 5884 broad.mit.edu 36 5 68745768 68745768 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_133341 exon16 c.C1648A p.Q550K . . . CEP72 55722 broad.mit.edu 36 5 697452 697452 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018140 exon10 c.G1578T p.E526D . . . BDP1 55814 broad.mit.edu 36 5 70787532 70787532 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018429 exon1 c.T72G p.A24A . . . BDP1 55814 broad.mit.edu 36 5 70790281 70790281 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_018429 exon2 c.T332C p.V111A . . . BDP1 55814 broad.mit.edu 36 5 70795680 70795680 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018429 exon4 c.G639A p.S213S . . . BDP1 55814 broad.mit.edu 36 5 70818090 70818090 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018429 exon9 c.G1093A p.D365N . . . BDP1 55814 broad.mit.edu 36 5 70822690 70822690 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_018429 exon11 c.G1616T p.R539I . . . BDP1 55814 broad.mit.edu 36 5 70855664 70855664 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_018429 exon25 c.C5530T p.R1844C . . . MAP1B 4131 broad.mit.edu 36 5 71527528 71527528 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005909 exon5 c.G2590A p.E864K . . . MAP1B 4131 broad.mit.edu 36 5 71528202 71528202 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005909 exon5 c.G3264T p.E1088D . . . MAP1B 4131 broad.mit.edu 36 5 71530781 71530781 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005909 exon5 c.G5843A p.R1948Q . . . MAP1B 4131 broad.mit.edu 36 5 71531076 71531076 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005909 exon5 c.G6138T p.E2046D . . . FCHO2 115548 broad.mit.edu 36 5 72300147 72300147 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001146032 exon2 c.G100T p.E34X . . . ANKRA2 57763 broad.mit.edu 36 5 72894287 72894287 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_023039 exon2 c.G176A p.R59Q . . . RGNEF 64283 broad.mit.edu 36 5 73164025 73164025 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001177693 exon10 c.T1131C p.C377C . . . RGNEF 64283 broad.mit.edu 36 5 73224826 73224826 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001177693 exon28 c.G3615T p.K1205N . . . HEXB 3074 broad.mit.edu 36 5 74017073 74017073 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_000521 exon1 c.T232G p.Y78D . . . GFM2 84340 broad.mit.edu 36 5 74057252 74057252 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032380 exon19 c.T1997G p.I666S . . . GFM2 84340 broad.mit.edu 36 5 74061944 74061944 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032380 exon17 c.G1623T p.E541D . . . FAM169A 26049 broad.mit.edu 36 5 74173202 74173202 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_015566 exon2 c.C56T p.S19F . . . GCNT4 51301 broad.mit.edu 36 5 74361123 74361123 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016591 exon1 c.C496T p.R166C . . . GCNT4 51301 broad.mit.edu 36 5 74361558 74361558 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_016591 exon1 c.T61G p.L21V . . . HMGCR 3156 broad.mit.edu 36 5 74691627 74691627 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_000859 exon19 c.G2519A p.R840Q . . . POLK 51426 broad.mit.edu 36 5 74928119 74928119 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_016218 exon13 c.T1845C p.N615N . . . SV2C 22987 broad.mit.edu 36 5 75463853 75463853 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_014979 exon2 c.C522T p.F174F . . . IQGAP2 10788 broad.mit.edu 36 5 75793206 75793206 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_006633 exon2 c.G102T p.Q34H . . . IQGAP2 10788 broad.mit.edu 36 5 76000370 76000370 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006633 exon23 c.C2788T p.R930X . . . F2RL1 2150 broad.mit.edu 36 5 76164997 76164997 + Missense_Mutation SNP G A A rs2243062 by-cluster,by-frequency,by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005242 exon2 c.G809A p.R270Q . . . AGGF1 55109 broad.mit.edu 36 5 76367310 76367310 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018046 exon3 c.G502A p.A168T . . . PDE8B 8622 broad.mit.edu 36 5 76660582 76660582 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003719 exon4 c.G594A p.S198S . . . WDR41 55255 broad.mit.edu 36 5 76769910 76769910 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_018268 exon10 c.C915T p.Y305Y . . . OTP 23440 broad.mit.edu 36 5 76968531 76968531 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032109 exon2 c.C318T p.R106R . . . ADCY2 108 broad.mit.edu 36 5 7751376 7751376 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_020546 exon7 c.G998T p.R333I . . . AP3B1 8546 broad.mit.edu 36 5 77547655 77547655 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003664 exon7 c.T766C p.F256L . . . AP3B1 8546 broad.mit.edu 36 5 77558964 77558964 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003664 exon5 c.A524C p.Q175P . . . LHFPL2 10184 broad.mit.edu 36 5 77841511 77841511 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_005779 exon4 c.C282T p.S94S . . . DMGDH 29958 broad.mit.edu 36 5 78362433 78362433 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_013391 exon10 c.C1662A p.L554L . . . BHMT2 23743 broad.mit.edu 36 5 78412298 78412298 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_017614 exon4 c.C291T p.L97L . . . BHMT2 23743 broad.mit.edu 36 5 78414508 78414508 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001178005 exon4 c.G379T p.E127X . . . BHMT 635 broad.mit.edu 36 5 78451966 78451966 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001713 exon4 c.G323A p.R108Q . . . BHMT 635 broad.mit.edu 36 5 78457631 78457631 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001713 exon6 c.C632A p.S211Y . . . BHMT 635 broad.mit.edu 36 5 78459437 78459437 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001713 exon7 c.C912A p.P304P . . . JMY 133746 broad.mit.edu 36 5 78647690 78647690 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_152405 exon10 c.A2771C p.N924T . . . HOMER1 9456 broad.mit.edu 36 5 78778703 78778703 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_004272 exon4 c.T316G p.F106V . . . C5orf49 134121 broad.mit.edu 36 5 7888566 7888566 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001089584 exon2 c.G193T p.D65Y . . . PAPD4 167153 broad.mit.edu 36 5 78954841 78954841 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114394 exon4 c.G238A p.D80N . . . PAPD4 167153 broad.mit.edu 36 5 78980655 78980655 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114394 exon10 c.C913T p.R305C . . . PAPD4 167153 broad.mit.edu 36 5 79016803 79016803 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001114394 exon15 c.G1406T p.R469I . . . CMYA5 202333 broad.mit.edu 36 5 79061911 79061911 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153610 exon2 c.G1567T p.D523Y . . . CMYA5 202333 broad.mit.edu 36 5 79065711 79065711 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153610 exon2 c.G5367A p.K1789K . . . CMYA5 202333 broad.mit.edu 36 5 79066860 79066860 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153610 exon2 c.G6516T p.K2172N . . . CMYA5 202333 broad.mit.edu 36 5 79068712 79068712 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153610 exon2 c.G8368A p.E2790K . . . CMYA5 202333 broad.mit.edu 36 5 79069584 79069584 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153610 exon2 c.G9240T p.E3080D . . . CMYA5 202333 broad.mit.edu 36 5 79070803 79070803 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153610 exon2 c.G10459T p.E3487X . . . FASTKD3 79072 broad.mit.edu 36 5 7919971 7919971 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_024091 exon2 c.C1226T p.S409F . . . FASTKD3 79072 broad.mit.edu 36 5 7920316 7920316 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_024091 exon2 c.A881C p.K294T . . . SPZ1 84654 broad.mit.edu 36 5 79652942 79652942 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032567 exon1 c.G1152T p.K384N . . . ZFYVE16 9765 broad.mit.edu 36 5 79768868 79768868 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001105251 exon4 c.G608A p.G203E . . . ZFYVE16 9765 broad.mit.edu 36 5 79804429 79804429 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001105251 exon16 c.T4118G p.V1373G . . . FAM151B 167555 broad.mit.edu 36 5 79851341 79851341 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_205548 exon4 c.A391G p.N131D . . . ANKRD34B 340120 broad.mit.edu 36 5 79890984 79890984 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001004441 exon5 c.C611T p.T204M . . . MSH3 4437 broad.mit.edu 36 5 80001866 80001866 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002439 exon4 c.C774A p.F258L . . . MSH3 4437 broad.mit.edu 36 5 80057122 80057122 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002439 exon9 c.G1435T p.D479Y . . . RASGRF2 5924 broad.mit.edu 36 5 80417475 80417475 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_006909 exon8 c.G1260T p.E420D . . . CKMT2 1160 broad.mit.edu 36 5 80586586 80586586 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001825 exon6 c.G466A p.D156N . . . CKMT2 1160 broad.mit.edu 36 5 80586787 80586787 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001825 exon6 c.G667A p.D223N . . . CKMT2 1160 broad.mit.edu 36 5 80590701 80590701 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001825 exon9 c.C886T p.R296W . . . ZCCHC9 84240 broad.mit.edu 36 5 80644195 80644195 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001131036 exon6 c.G774A p.P258P . . . ACOT12 134526 broad.mit.edu 36 5 80662401 80662401 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130767 exon14 c.C1506A p.S502R . . . ACOT12 134526 broad.mit.edu 36 5 80691535 80691535 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130767 exon5 c.C439T p.R147X . . . ACOT12 134526 broad.mit.edu 36 5 80695440 80695440 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_130767 exon4 c.G283T p.D95Y . . . VCAN 1462 broad.mit.edu 36 5 82815159 82815159 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164097 exon2 c.T66C p.H22H . . . VCAN 1462 broad.mit.edu 36 5 82821831 82821831 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164097 exon3 c.G229T p.D77Y . . . VCAN 1462 broad.mit.edu 36 5 82852041 82852041 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164098 exon7 c.C2160T p.V720V . . . VCAN 1462 broad.mit.edu 36 5 82853389 82853389 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164098 exon7 c.A3508G p.T1170A . . . VCAN 1462 broad.mit.edu 36 5 82868626 82868626 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164097 exon7 c.G1087T p.E363X . . . VCAN 1462 broad.mit.edu 36 5 82870295 82870295 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_001164097 exon7 c.T2756G p.I919R . . . VCAN 1462 broad.mit.edu 36 5 82872004 82872004 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164097 exon7 c.G4465A p.A1489T . . . VCAN 1462 broad.mit.edu 36 5 82872817 82872817 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001164097 exon7 c.A5278G p.T1760A . . . VCAN 1462 broad.mit.edu 36 5 82873566 82873566 + Silent SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_001164097 exon7 c.A6027G p.P2009P . . . VCAN 1462 broad.mit.edu 36 5 82884984 82884984 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001164097 exon10 c.G6578A p.C2193Y . . . VCAN 1462 broad.mit.edu 36 5 82885097 82885097 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001164097 exon10 c.C6691T p.R2231C . . . RASA1 5921 broad.mit.edu 36 5 86664865 86664865 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002890 exon4 c.G854A p.R285Q . . . RASA1 5921 broad.mit.edu 36 5 86705784 86705784 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002890 exon14 c.A1825C p.K609Q . . . RASA1 5921 broad.mit.edu 36 5 86716898 86716898 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002890 exon22 c.G2783T p.R928I . . . TMEM161B 153396 broad.mit.edu 36 5 87538746 87538746 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153354 exon6 c.C454A p.L152I . . . MEF2C 4208 broad.mit.edu 36 5 88092596 88092596 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001193347 exon6 c.G421A p.E141K . . . LYSMD3 116068 broad.mit.edu 36 5 89850868 89850868 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_198273 exon3 c.G445T p.D149Y . . . GPR98 84059 broad.mit.edu 36 5 89950682 89950682 + Silent SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon4 c.T381C p.L127L . . . GPR98 84059 broad.mit.edu 36 5 89959157 89959157 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon7 c.A1046G p.D349G . . . GPR98 84059 broad.mit.edu 36 5 89975549 89975549 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon14 c.C2727A p.I909I . . . GPR98 84059 broad.mit.edu 36 5 89985354 89985354 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon20 c.T4207G p.L1403V . . . GPR98 84059 broad.mit.edu 36 5 90007748 90007748 + Silent SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon25 c.T5409G p.S1803S . . . GPR98 84059 broad.mit.edu 36 5 90025783 90025783 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon33 c.A7454G p.N2485S . . . GPR98 84059 broad.mit.edu 36 5 90088561 90088561 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon57 c.G11767T p.E3923X . . . GPR98 84059 broad.mit.edu 36 5 90108046 90108046 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon61 c.C12424T p.R4142W . . . GPR98 84059 broad.mit.edu 36 5 90114747 90114747 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon66 c.A13282C p.T4428P . . . GPR98 84059 broad.mit.edu 36 5 90142101 90142101 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon74 c.T15268A p.F5090I . . . GPR98 84059 broad.mit.edu 36 5 90185093 90185093 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_032119 exon80 c.C17441T p.T5814I . . . ARRDC3 57561 broad.mit.edu 36 5 90705286 90705286 + Nonsense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_020801 exon7 c.C1159T p.R387X . . . SEMA5A 9037 broad.mit.edu 36 5 9207665 9207665 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003966 exon12 c.C1416T p.F472F . . . SEMA5A 9037 broad.mit.edu 36 5 9290971 9290971 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_003966 exon6 c.A302C p.K101T . . . NR2F1 7025 broad.mit.edu 36 5 92949819 92949819 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina NM_005654 exon2 c.T904G p.F302V . . . POU5F2 134187 broad.mit.edu 36 5 93102966 93102966 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153216 exon1 c.C60T p.G20G . . . FAM172A 83989 broad.mit.edu 36 5 93436156 93436156 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_032042 exon2 c.A57C p.Q19H . . . MCTP1 79772 broad.mit.edu 36 5 94072337 94072337 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002796 exon21 c.C2109A p.L703L . . . BRD9 65980 broad.mit.edu 36 5 942244 942244 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_023924 exon5 c.G498A p.T166T . . . MCTP1 79772 broad.mit.edu 36 5 94270743 94270743 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001002796 exon10 c.G958T p.D320Y . . . MCTP1 79772 broad.mit.edu 36 5 94378890 94378890 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_001002796 exon2 c.G112T p.G38X . . . FAM81B 153643 broad.mit.edu 36 5 94752881 94752881 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152548 exon1 c.C32T p.S11F . . . FAM81B 153643 broad.mit.edu 36 5 94775561 94775561 + Nonsense_Mutation SNP C T T rs10042271 by-hapmap TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152548 exon4 c.C448T p.R150X . . . FAM81B 153643 broad.mit.edu 36 5 94808049 94808049 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_152548 exon8 c.C921T p.Y307Y . . . ARSK 153642 broad.mit.edu 36 5 94944639 94944639 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198150 exon4 c.C680A p.S227Y . . . ARSK 153642 broad.mit.edu 36 5 94953056 94953056 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198150 exon6 c.C1067A p.S356Y . . . ARSK 153642 broad.mit.edu 36 5 94962347 94962347 + Nonsense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_198150 exon7 c.C1137A p.Y379X . . . RFESD 317671 broad.mit.edu 36 5 95017759 95017759 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_001131065 exon6 c.G623T p.S208I . . . RHOBTB3 22836 broad.mit.edu 36 5 95117135 95117135 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014899 exon6 c.C962A p.S321Y . . . RHOBTB3 22836 broad.mit.edu 36 5 95124997 95124997 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014899 exon7 c.G1078T p.D360Y . . . RHOBTB3 22836 broad.mit.edu 36 5 95154558 95154558 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_014899 exon12 c.C1760T p.S587L . . . GLRX 2745 broad.mit.edu 36 5 95183943 95183943 + Nonsense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A C A A Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_002064 exon1 c.T180G p.Y60X . . . ELL2 22936 broad.mit.edu 36 5 95252641 95252641 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina NM_012081 exon10 c.G1683T p.R561S . . . PCSK1 5122 broad.mit.edu 36 5 95761559 95761559 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001177875 exon10 c.G1143T p.K381N . . . ERAP1 51752 broad.mit.edu 36 5 96144539 96144539 + Missense_Mutation SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T G T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040458 exon15 c.A2257C p.K753Q . . . ERAP1 51752 broad.mit.edu 36 5 96162405 96162405 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001040458 exon3 c.C579A p.C193X . . . ERAP2 64167 broad.mit.edu 36 5 96253866 96253866 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022350 exon6 c.G1078A p.D360N . . . ERAP2 64167 broad.mit.edu 36 5 96258269 96258269 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_022350 exon9 c.G1449T p.K483N . . . ERAP2 64167 broad.mit.edu 36 5 96274917 96274917 + Missense_Mutation SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina NM_022350 exon17 c.A2657C p.K886T . . . LNPEP 4012 broad.mit.edu 36 5 96340648 96340648 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005575 exon2 c.G70T p.E24X . . . LNPEP 4012 broad.mit.edu 36 5 96386045 96386045 + Missense_Mutation SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T A T T Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_005575 exon15 c.T2626A p.F876I . . . LIX1 167410 broad.mit.edu 36 5 96456450 96456450 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_153234 exon6 c.C607T p.R203C . . . LIX1 167410 broad.mit.edu 36 5 96458293 96458293 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina NM_153234 exon5 c.C538T p.R180C . . . TAS2R1 50834 broad.mit.edu 36 5 9682254 9682254 + Silent SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G A G G Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_019599 exon1 c.C891T p.C297C . . . CHD1 1105 broad.mit.edu 36 5 98264585 98264585 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina NM_001270 exon6 c.G689T p.R230I . . . NDUFA5 4698 broad.mit.edu 36 7 122972893 122972893 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . COPG2 26958 broad.mit.edu 36 7 129933749 129933749 + 3'UTR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ACTR3B 57180 broad.mit.edu 36 7 152153142 152153142 + Splice_Site SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T T C T T Unknown Valid Somatic Phase_I Capture SOLID Illumina . . . . . . . NSUN5P2 260294 broad.mit.edu 36 7 72057493 72057493 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . RFC2 5982 broad.mit.edu 36 7 73287915 73287915 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . NSUN5P1 155400 broad.mit.edu 36 7 74883293 74883293 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . LOC388796 388796 broad.mit.edu 36 20 36496046 36496046 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SNORD113-5 767565 broad.mit.edu 36 14 100472664 100472664 + 5'Flank SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ADAM6 8755 broad.mit.edu 36 14 105804409 105804409 + RNA SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ADAM6 8755 broad.mit.edu 36 14 105948744 105948744 + RNA SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ADAM6 8755 broad.mit.edu 36 14 106065315 106065315 + Intron SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ADAM6 8755 broad.mit.edu 36 14 106149489 106149489 + RNA SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ADAM6 8755 broad.mit.edu 36 14 106154576 106154576 + RNA SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ADAM6 8755 broad.mit.edu 36 14 106166237 106166237 + RNA SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ADAM6 8755 broad.mit.edu 36 14 106250005 106250005 + RNA SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . MIR208A 406990 broad.mit.edu 36 14 22927665 22927665 + RNA SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . PSMA6 5687 broad.mit.edu 36 14 34853310 34853310 + Intron SNP T A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TIMM9 26520 broad.mit.edu 36 14 57948420 57948420 + 5'UTR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TGFB3 7043 broad.mit.edu 36 14 75517001 75517001 + 5'UTR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SERPINA13 388007 broad.mit.edu 36 14 94179608 94179608 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . GSC 145258 broad.mit.edu 36 14 94304575 94304575 + 3'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . LGALS2 3957 broad.mit.edu 36 22 36296697 36296697 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SERHL 94009 broad.mit.edu 36 22 41234998 41234998 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ZNF833P 401898 broad.mit.edu 36 19 11657201 11657201 + Nonsense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . MAMSTR 284358 broad.mit.edu 36 19 53908851 53908851 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . RPL13A 23521 broad.mit.edu 36 19 54686273 54686273 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . DPRX 503834 broad.mit.edu 36 19 58829589 58829589 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . GALP 85569 broad.mit.edu 36 19 61380288 61380288 + 5'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . DUXA 503835 broad.mit.edu 36 19 62358553 62358553 + Splice_Site SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ZNF706 51123 broad.mit.edu 36 8 102281502 102281502 + Splice_Site SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina . . . . . . . PVT1 5820 broad.mit.edu 36 8 129130643 129130643 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . VPS37A 137492 broad.mit.edu 36 8 17178271 17178271 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . GTF2E2 2961 broad.mit.edu 36 8 30591660 30591660 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . FBXO25 26260 broad.mit.edu 36 8 372885 372885 + Splice_Site SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . PRKY 5616 broad.mit.edu 36 Y 7254115 7254115 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C T C C Unknown Valid Somatic Phase_I Capture SOLID Illumina . . . . . . . CTSK 1513 broad.mit.edu 36 1 149045915 149045915 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . FCGR2B 2213 broad.mit.edu 36 1 159909385 159909385 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C1orf105 92346 broad.mit.edu 36 1 170697935 170697935 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . GAS5 60674 broad.mit.edu 36 1 172102063 172102063 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . RGS8 85397 broad.mit.edu 36 1 180901795 180901795 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . H3F3A 3020 broad.mit.edu 36 1 224318810 224318810 + Intron SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . BTF3L4 91408 broad.mit.edu 36 1 52303080 52303080 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SPATA1 64173 broad.mit.edu 36 1 84764287 84764287 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CLCA3P 9629 broad.mit.edu 36 1 86877117 86877117 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . DR1 1810 broad.mit.edu 36 1 93592047 93592047 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C1orf200 644997 broad.mit.edu 36 1 9636962 9636962 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TTC9C 283237 broad.mit.edu 36 11 62262442 62262442 + 3'UTR SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ATL3 25923 broad.mit.edu 36 11 63160383 63160383 + Splice_Site SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ATL3 25923 broad.mit.edu 36 11 63170550 63170550 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ATL3 25923 broad.mit.edu 36 11 63183077 63183077 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . MALAT1 378938 broad.mit.edu 36 11 65024143 65024143 + RNA SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C11orf67 28971 broad.mit.edu 36 11 77261010 77261010 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . STL 7955 broad.mit.edu 36 6 125273271 125273271 + RNA SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . STL 7955 broad.mit.edu 36 6 125273676 125273676 + RNA SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . STL 7955 broad.mit.edu 36 6 125275301 125275301 + RNA SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SLC22A2 6582 broad.mit.edu 36 6 160590416 160590416 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . BTN2A3 54718 broad.mit.edu 36 6 26534709 26534709 + Nonsense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G G T G G Unknown Valid Somatic Phase_I Capture SOLID Illumina . . . . . . . DOM3Z 1797 broad.mit.edu 36 6 32046590 32046590 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CCDC144B 284047 broad.mit.edu 36 17 18427536 18427536 + Missense_Mutation SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CCDC144B 284047 broad.mit.edu 36 17 18469438 18469438 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . FAM27L 284123 broad.mit.edu 36 17 21749699 21749699 + Silent SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . OR3A4 390756 broad.mit.edu 36 17 3160661 3160661 + Missense_Mutation SNP G A A rs9903671 by-cluster,by-frequency,by-2hit-2allele,by-hapmap,by-1000genomes TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . OR3A4 390756 broad.mit.edu 36 17 3161275 3161275 + Silent SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . GDPD1 284161 broad.mit.edu 36 17 54677545 54677545 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . RRN3 54700 broad.mit.edu 36 16 15081460 15081460 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . EIF3CL 728689 broad.mit.edu 36 16 28619253 28619253 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . PRSS53 339105 broad.mit.edu 36 16 31006620 31006620 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ZNF271 10778 broad.mit.edu 36 18 31141839 31141839 + Missense_Mutation SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . MYL12B 103910 broad.mit.edu 36 18 3263084 3263084 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . GCET2 257144 broad.mit.edu 36 3 113326792 113326792 + Splice_Site SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C C A C C Unknown Valid Somatic Phase_I Capture SOLID Illumina . . . . . . . SEC22A 26984 broad.mit.edu 36 3 124426842 124426842 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ALG1L 200810 broad.mit.edu 36 3 127132167 127132167 + Intron SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C3orf79 152118 broad.mit.edu 36 3 154702877 154702877 + Intron SNP A C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . NPRL2 10641 broad.mit.edu 36 3 50362361 50362361 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . WDR82 80335 broad.mit.edu 36 3 52269569 52269569 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SYNPR 132204 broad.mit.edu 36 3 63441538 63441538 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ARL6 84100 broad.mit.edu 36 3 98981684 98981684 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CRYBG3 131544 broad.mit.edu 36 3 99078714 99078714 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CRYBG3 131544 broad.mit.edu 36 3 99138335 99138335 + Missense_Mutation SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . PRB1 5542 broad.mit.edu 36 12 11398756 11398756 + Splice_Site SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . DENR 8562 broad.mit.edu 36 12 121819281 121819281 + Splice_Site SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . MGP 4256 broad.mit.edu 36 12 14928407 14928407 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C12orf67 144360 broad.mit.edu 36 12 24628165 24628165 + Silent SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CAPS2 84698 broad.mit.edu 36 12 73979025 73979025 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . NECAP1 25977 broad.mit.edu 36 12 8134047 8134047 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CLLU1OS 574016 broad.mit.edu 36 12 91339085 91339085 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SNORD116-4 100033416 broad.mit.edu 36 15 22884089 22884089 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SNORD116-4 100033416 broad.mit.edu 36 15 22885074 22885074 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SNORD116-4 100033416 broad.mit.edu 36 15 22893979 22893979 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SNORD115-26 100033802 broad.mit.edu 36 15 23028640 23028640 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SNORD115-40 100033814 broad.mit.edu 36 15 23037989 23037989 + 5'Flank SNP T C C novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C15orf63 25764 broad.mit.edu 36 15 41881000 41881000 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SNRPA1 6627 broad.mit.edu 36 15 99644029 99644029 + Intron SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . EIF4E 1977 broad.mit.edu 36 4 100021323 100021323 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . EIF4E 1977 broad.mit.edu 36 4 100028137 100028137 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TMEM155 132332 broad.mit.edu 36 4 122900898 122900898 + 3'UTR SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . SSX1 6756 broad.mit.edu 36 X 48008307 48008307 + Intron SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ASB12 142689 broad.mit.edu 36 X 63362229 63362229 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TSIX 9383 broad.mit.edu 36 X 72957480 72957480 + RNA SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TSIX 9383 broad.mit.edu 36 X 72958272 72958272 + RNA SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TSIX 9383 broad.mit.edu 36 X 72959576 72959576 + RNA SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . XIST 7503 broad.mit.edu 36 X 72979011 72979011 + RNA SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . XIST 7503 broad.mit.edu 36 X 72987857 72987857 + RNA SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C2orf27A 29798 broad.mit.edu 36 2 132225591 132225591 + 5'UTR SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . HOXD8 3234 broad.mit.edu 36 2 176704279 176704279 + Intron SNP T G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 T T Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C2orf47 79568 broad.mit.edu 36 2 200532313 200532313 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . EEF1B2 1933 broad.mit.edu 36 2 206735457 206735457 + Splice_Site SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C2orf52 151477 broad.mit.edu 36 2 232082077 232082077 + Missense_Mutation SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ATL2 64225 broad.mit.edu 36 2 38393890 38393890 + Splice_Site SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . CRIPT 9419 broad.mit.edu 36 2 46704794 46704794 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . GPR107 57720 broad.mit.edu 36 9 131937229 131937229 + 3'UTR SNP G A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . MTAP 4507 broad.mit.edu 36 9 22019467 22019467 + Missense_Mutation SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . ENHO 375704 broad.mit.edu 36 9 34511451 34511451 + 3'UTR SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . AKR1CL1 340811 broad.mit.edu 36 10 5194847 5194847 + Missense_Mutation SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A A G A A Unknown Valid Somatic Phase_I Capture SOLID Illumina . . . . . . . UBE2D2 7322 broad.mit.edu 36 5 138974624 138974624 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . C5orf46 389336 broad.mit.edu 36 5 147261373 147261373 + Intron SNP C T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . NUDCD2 134492 broad.mit.edu 36 5 162813641 162813641 + Intron SNP G T T novel TCGA-AG-A002-01 TCGA-AG-A002-01 G G Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . FAM153C 653316 broad.mit.edu 36 5 177398986 177398986 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . TMEM167A 153339 broad.mit.edu 36 5 82395818 82395818 + Intron SNP A G G novel TCGA-AG-A002-01 TCGA-AG-A002-01 A A Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . . FAM174A 345757 broad.mit.edu 36 5 99925646 99925646 + Intron SNP C A A novel TCGA-AG-A002-01 TCGA-AG-A002-01 C C Unknown Unknown Somatic Phase_I Capture Illumina . . . . . . .